Multiple genome-alignment of 120 mammals using human as reference ///////////////////////////////////////////////////////////////// The data for the human 120way genome alignment is organized as follows: 1) 'mapping_assembly_species_name_120way.tsv.gz' ------------------------------------------------ * A tab-separated file listing the aligned genomes [assembly-identifier] [common-name] [scientific name] 2) 'cesar_annotation_ensembl96' ------------------------------- * contains protein-coding gene annotations for the 119 non-human mammals * in GenePred format * a seperate file for each species: [assembly-identifier].gp * computed using the 120way alignment, CESAR, and human Ensembl 96 gene annotations 3) 'conservation' ----------------- * contains conserved elements identified by PhastCons and GERP++ * in BED format 4) 'maf' -------- * contains the 120 mammal genome alignment using human (hg38) as a reference * in annotated MAF format * one file per chromosome 5) 'phylogeny' -------------- * contains phylogenetic trees in Newick/New Hampshire and mod format * species are given by [assembly-identifier] and [scientific name]