Data for "Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation" by Virag Sharma and Michael Hiller
../
Human_144wayAlignment/ 04-Jan-2017 11:11 -
humanExonsMappedByCESAR/ 04-Jan-2017 11:11 -
trackHub/ 04-Jan-2017 12:38 -
Click here to load all human genes mapped by CESAR via the 144-way alignment as a trackHub into the UCSC genome browser.
Here are track hub loading links for each species separately:
Chimp (panTro4)
Bonobo (panPan1)
Gorilla (gorGor3)
Orangutan (ponAbe2)
Gibbon (nomLeu3)
Rhesus (rheMac3)
Crab eating macaque (macFas5)
Baboon (papAnu2)
Green monkey (chlSab2)
Proboscis monkey (nasLar1)
Golden snub nosed monkey (rhiRox1)
Marmoset (calJac3)
Squirrel monkey (saiBol1)
Tarsier (tarSyr2)
Bushbaby (otoGar3)
Mouse lemur (micMur2)
Chinese tree shrew (tupChi1)
Squirrel (speTri2)
Lesser Egyptian jerboa (jacJac1)
Prairie vole (micOch1)
Prairie deer mouse (perManBai1)
Chinese hamster (criGri1)
Golden hamster (mesAur1)
Mouse (mm10)
Rat (rn6)
Upper Galilee mountains blind mole rat (nanGal1)
Naked mole rat (hetGla2)
Guinea pig (cavPor3)
Chinchilla (chiLan1)
Brush tailed rat (octDeg1)
Rabbit (oryCun2)
Pika (ochPri3)
Pig (susScr3)
Alpaca (vicPac2)
Bactrian camel (camFer1)
Dolphin (turTru2)
Killer whale (orcOrc1)
Sperm whale (phyCat1)
Minke whale (balAcu1)
Tibetan antelope (panHod1)
Cow (bosTau8)
Bison (bisBis1)
Sheep (oviAri3)
Domestic goat (capHir1)
Horse (equCab2)
White rhinoceros (cerSim1)
Cat (felCat8)
Dog (canFam3)
Ferret (musFur1)
Panda (ailMel1)
Polar bear (ursMar1)
Pacific walrus (odoRosDiv1)
Weddell seal (lepWed1)
Chinese pangolin (manPen1)
Black flying fox (pteAle1)
Megabat (pteVam1)
Big brown bat (eptFus1)
Davids myotis bat (myoDav1)
Microbat (myoLuc2)
Hedgehog (eriEur2)
Shrew (sorAra2)
Star nosed mole (conCri1)
Elephant (loxAfr3)
Cape elephant shrew (eleEdw1)
Manatee (triMan1)
Cape golden mole (chrAsi1)
Tenrec (echTel2)
Aardvark (oryAfe1)
Armadillo (dasNov3)
Opossum (monDom5)
Tasmanian devil (sarHar1)
Wallaby (macEug2)
Platypus (ornAna2)
White throated sparrow (zonAlb1)
Medium ground finch (geoFor1)
Canary (serCan1)
Zebra finch (taeGut2)
Collared flycatcher (ficAlb2)
Tibetan ground jay (pseHum1)
Hooded crow (corCor1)
American crow (corBra1)
Golden collared manakin (manVit1)
Budgerigar (melUnd1)
Parrot (amaVit1)
Scarlet macaw (araMac1)
Peregrine falcon (falPer1)
Saker falcon (falChe1)
Downy woodpecker (picPub1)
Bald eagle (halLeu1)
Golden eagle (aquChr2)
Little egret (egrGar1)
Crested ibis (nipNip1)
Adelie penguin (pygAde1)
Emperor penguin (aptFor1)
Killdeer (chaVoc2)
Hoatzin (opiHoa1)
Annas hummingbird (calAnn1)
Common cuckoo (cucCan1)
Rock pigeon (colLiv1)
Chicken (galGal4)
Turkey (melGal1)
Mallard duck (anaPla1)
White throated tinamou (tinGut2)
Ostrich (strCam1)
American alligator (allMis1)
Gharial (gavGan0)
Green seaturtle (cheMyd1)
Painted turtle (chrPic2)
Chinese softshell turtle (pelSin1)
Spiny softshell turtle (apaSpi1)
Lizard (anoCar2)
Burmese python (pytBiv1)
X tropicalis (xenTro7)
Tibetan frog (nanPar1)
Coelacanth (latCha1)
Nile tilapia (oreNil2)
Princess of Burundi (neoBri1)
Burtons mouthbreeder (hapBur1)
Zebra mbuna (mayZeb1)
Pundamilia nyererei (punNye1)
Bicolor damselfish (stePar1)
Medaka (oryLat2)
Southern platyfish (xipMac1)
Amazon molly (poeFor1)
Guppy (poeRet1)
Sheepshead minnow (cypVar1)
Stickleback (gasAcu1)
Black rockcod (notCor1)
European sea bass (dicLab1)
Tetraodon (tetNig2)
Fugu (fr3)
Yellowbelly pufferfish (takFla1)
Tongue sole (cynSem1)
Atlantic cod (gadMor1)
Northern pike (esoLuc1)
Zebrafish (danRer10)
Mexican tetra cavefish (astMex1)
Spotted gar (lepOcu1)
Elephant shark (calMil1)
Lamprey (petMar2)
Arctic lamprey (letCam1)