#### 1700028P14Rik_ID5185_4 --> 1 - 2 Original Alignment gGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcaggGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAAccgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc Alignment from CESAR gGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcaggGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAAccgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc Alignment from Spaln_aa2Genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcagGGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAACCgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc Alignment from Spaln_nt2Genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcagGGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAACCgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc Alignment from Pairagon GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcagGGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAACCgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc Alignment from Exonerate_protein2genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcagGGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAACCgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc Alignment from Exonerate_coding2genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcagGGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAACCgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc Alignment from GeneWise GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC caaatgtgactgtctgcttcattacttatgtttgttctattgtctggcagGGACCCTGAATTGCCTCCCACAGGCTTTCGAGACGTGCCTATGGAATCCCCACCAGATCCAAGAAAACCgtaagttgttcctaaactgctgctgaatatgtactggagtgaaatgtgcc #### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ccgaacagtagacccagtctaaccttgatgccccctgctggtccctctagTCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGgtaagacctgttggctgagggatggtgagtgaaggtcaaagcagggtggc #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctaggaAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctaggaAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcactaaacggctcaactttctccctagGAAACTGTGTGGTGTTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCTCAGTATCTGGACCAGgtagtgatggcttatctgtcaagcagcctggcacacccacacccctgtgc #### 2010012O05Rik_ID10005_4 --> 1 - 2 Original Alignment gCAAGAAGCTATTCAGAAGaa atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacaggCAAGAAGCTATTCAGAAGaagtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga Alignment from CESAR gCAAGAAGCTATTCAGAAGaa atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacaggCAAGAAGCTATTCAGAAGaagtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga Alignment from Spaln_aa2Genome GCAAGAAGCTATTCAGAAGAA atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacagGCAAGAAGCTATTCAGAAGAAgtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga Alignment from Spaln_nt2Genome GCAAGAAGCTATTCAGAAGAA atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacagGCAAGAAGCTATTCAGAAGAAgtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga Alignment from Pairagon GCAAGAAGCTATTCAGAAGAA atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacagGCAAGAAGCTATTCAGAAGAAgtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga Alignment from Exonerate_protein2genome GCAAGAAGCTATTCAGAAGAA atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacagGCAAGAAGCTATTCAGAAGAAgtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga Alignment from Exonerate_coding2genome atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacaggcaagaagctattcagaagaagtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga Alignment from GeneWise atgatgctgacttgtctctgtctcattctgacgtttgccggttttcacaggcaagaagctattcagaagaagtaagtggacctcagaggtggtgggtggggctaactgaagcatactggga #### 2410127L17Rik_ID4446_2 --> 1 - 0 Original Alignment cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagcACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg Alignment from CESAR cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagcACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg Alignment from Spaln_aa2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagCACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg Alignment from Spaln_nt2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagCACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg Alignment from Pairagon CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagCACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg Alignment from Exonerate_protein2genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagCACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg Alignment from Exonerate_coding2genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagCACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg Alignment from GeneWise CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gatgagagagttctattgccaaataaaacactgtcttgttgccctttcagCACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtacgtgacattgtttctatctcttttgatcttaggtcatcatctgtctg #### 2410127L17Rik_ID4448_3 --> 0 - 2 Original Alignment GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGAtg ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGAtggtaagtattaccacatttttacccactttctgtacggttgtatcatttag Alignment from CESAR GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGAtg ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGAtggtaagtattaccacatttttacccactttctgtacggttgtatcatttag Alignment from Spaln_aa2Genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagtattaccacatttttacccactttctgtacggttgtatcatttag Alignment from Spaln_nt2Genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagtattaccacatttttacccactttctgtacggttgtatcatttag Alignment from Pairagon GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagtattaccacatttttacccactttctgtacggttgtatcatttag Alignment from Exonerate_protein2genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagtattaccacatttttacccactttctgtacggttgtatcatttag Alignment from Exonerate_coding2genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagtattaccacatttttacccactttctgtacggttgtatcatttag Alignment from GeneWise GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG ttcaaaattgggctccaagaaaataagtatgtctctccttttctttccagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagtattaccacatttttacccactttctgtacggttgtatcatttag #### 4430402I18Rik_ID6181_9 --> 0 - 2 Original Alignment GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAag caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAaggtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca Alignment from CESAR GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAag caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAaggtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca Alignment from Spaln_aa2Genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAGgtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca Alignment from Spaln_nt2Genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAGgtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca Alignment from Pairagon GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAGgtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca Alignment from Exonerate_protein2genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAGgtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca Alignment from Exonerate_coding2genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAGgtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca Alignment from GeneWise GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG caaaacccaaactacaagtgaaaaataattgatcacttgactaactacagGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCACTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAGgtgagcagtcagtatctattcccttgccccaagagtctcaggttctgtca #### 4430402I18Rik_ID6183_7 --> 0 - 1 Original Alignment GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAg taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAggtataggagtttcttgttactcacattccccactgagcacccttgcattc Alignment from CESAR GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAg taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAggtataggagtttcttgttactcacattccccactgagcacccttgcattc Alignment from Spaln_aa2Genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAG taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAGgtataggagtttcttgttactcacattccccactgagcacccttgcattc Alignment from Spaln_nt2Genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAG taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAGgtataggagtttcttgttactcacattccccactgagcacccttgcattc Alignment from Pairagon GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAG taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAGgtataggagtttcttgttactcacattccccactgagcacccttgcattc Alignment from Exonerate_protein2genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAG taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAGgtataggagtttcttgttactcacattccccactgagcacccttgcattc Alignment from Exonerate_coding2genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAG taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAGgtataggagtttcttgttactcacattccccactgagcacccttgcattc Alignment from GeneWise GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAGCATCTTCTCTTGACA taagacagtgatccacgagactgtaggatttgtttctgttctttctctagGTGGATAGTGGGAACCCATTTGGTGAAAACAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTTGAAGAAAAGAGGTATAGGAGTTTCTTgttactcacattccccactgagcacccttgcattc #### 4430402I18Rik_ID6188_2 --> 0 - 1 Original Alignment GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa taccatttagtaaacgtttgcacatttcgctttcattccttgccttccagGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAagtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac Alignment from CESAR GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa taccatttagtaaacgtttgcacatttcgctttcattccttgccttccagGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAagtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac Alignment from Spaln_aa2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA taccatttagtaaacgtttgcacatttcgctttcattccttgccttccagGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac Alignment from Spaln_nt2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA taccatttagtaaacgtttgcacatttcgctttcattccttgccttccagGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac Alignment from Pairagon GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA taccatttagtaaacgtttgcacatttcgctttcattccttgccttccagGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac Alignment from Exonerate_protein2genome AAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA taccatttagtaaacgtttgcacatttcgctttcattccttgccttcCAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac Alignment from Exonerate_coding2genome AAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA taccatttagtaaacgtttgcacatttcgctttcattccttgccttcCAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac Alignment from GeneWise AGATTTGTAAAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA catttagtaaacgtttgcacatttcgctttcattcctt---GCCTTCCAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtgagcacttaggagaaaaaaaaaaagactcctgtttaattcacagttac #### 4930506M07Rik_ID12858_14 --> 0 - 0 Original Alignment CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tgtccttttgaattacagccagactctcttgtcttctttctccaatttagCCAGACTCTCTTAAGGGTTCAGAAAGTGCAGTGGATGAGCTGAAGGGAATACTGgtacacaagagctactgctcatgttactctgacttttcatgagtacttga Alignment from CESAR CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tgtccttttgaattacagccagactctcttgtcttctttctccaatttagCCAGACTCTCTTAAGGGTTCAGAAAGTGCAGTGGATGAGCTGAAGGGAATACTGgtacacaagagctactgctcatgttactctgacttttcatgagtacttga Alignment from Spaln_aa2Genome CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tgtccttttgaattacagccagactctcttgtcttctttctccaatttagCCAGACTCTCTTAAGGGTTCAGAAAGTGCAGTGGATGAGCTGAAGGGAATACTGgtacacaagagctactgctcatgttactctgacttttcatgagtacttga Alignment from Spaln_nt2Genome CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tgtccttttgaattacagccagactctcttgtcttctttctccaatttagCCAGACTCTCTTAAGGGTTCAGAAAGTGCAGTGGATGAGCTGAAGGGAATACTGgtacacaagagctactgctcatgttactctgacttttcatgagtacttga Alignment from Pairagon CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tgtccttttgaattacagccagactctcttgtcttctttctccaatttagCCAGACTCTCTTAAGGGTTCAGAAAGTGCAGTGGATGAGCTGAAGGGAATACTGgtacacaagagctactgctcatgttactctgacttttcatgagtacttga Alignment from Exonerate_protein2genome CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tgtccttttgaattacagccagactctcttgtcttctttctccaatttagCCAGACTCTCTTAAGGGTTCAGAAAGTGCAGTGGATGAGCTGAAGGGAATACTGgtacacaagagctactgctcatgttactctgacttttcatgagtacttga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCAGACTCTCTCAAGGGCTCAGAAAGTGCGGTGGATGAGCTGAAGGGAATCCTG tgtccttttgaattacagccagactctcttgtcttctttctccaatttagCCAGACTCTCTTAAGGGTTCAGAAAGTGCAGTGGATGAGCTGAAGGGAATACTGgtacacaagagctactgctcatgttactctgacttttcatgagtacttga #### 4930506M07Rik_ID12864_11 --> 2 - 2 Original Alignment tgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcg gtacggagtcacttatctcagctctttccattttgtttgtttctgcttagtgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCACCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcggtaataaccattgaggaccttcccgatactgatagatgctctttcccata Alignment from CESAR tgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcg gtacggagtcacttatctcagctctttccattttgtttgtttctgcttagtgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCACCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcggtaataaccattgaggaccttcccgatactgatagatgctctttcccata Alignment from Spaln_aa2Genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG gtacggagtcacttatctcagctctttccattttgtttgtttctgcttagTGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCACCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCGgtaataaccattgaggaccttcccgatactgatagatgctctttcccata Alignment from Spaln_nt2Genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG gtacggagtcacttatctcagctctttccattttgtttgtttctgcttagTGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCACCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCGgtaataaccattgaggaccttcccgatactgatagatgctctttcccata Alignment from Pairagon TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG gtacggagtcacttatctcagctctttccattttgtttgtttctgcttagTGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCACCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCGgtaataaccattgaggaccttcccgatactgatagatgctctttcccata Alignment from Exonerate_protein2genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG gtacggagtcacttatctcagctctttccattttgtttgtttctgcttagTGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCACCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCGgtaataaccattgaggaccttcccgatactgatagatgctctttcccata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG gtacggagtcacttatctcagctctttccattttgtttgtttctgcttagTGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCACCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCGgtaataaccattgaggaccttcccgatactgatagatgctctttcccata #### 4930506M07Rik_ID12871_6 --> 2 - 0 Original Alignment aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG ttgaaaagtaaaataatgcctattttaaagagcttgtgttgtctttgcagaaCTCCGAGATCAAATTGTCTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCAACGAGCTGGAAAACCTCAAGAGCAAACTTGGGGAGGTGATGGAGGAGgtaaccgtcctaggccagaagggccttttaaacttatagctcacttggtt Alignment from CESAR aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG ttgaaaagtaaaataatgcctattttaaagagcttgtgttgtctttgcagaaCTCCGAGATCAAATTGTCTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCAACGAGCTGGAAAACCTCAAGAGCAAACTTGGGGAGGTGATGGAGGAGgtaaccgtcctaggccagaagggccttttaaacttatagctcacttggtt Alignment from Spaln_aa2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG ttgaaaagtaaaataatgcctattttaaagagcttgtgttgtctttgcagAACTCCGAGATCAAATTGTCTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCAACGAGCTGGAAAACCTCAAGAGCAAACTTGGGGAGGTGATGGAGGAGgtaaccgtcctaggccagaagggccttttaaacttatagctcacttggtt Alignment from Spaln_nt2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG ttgaaaagtaaaataatgcctattttaaagagcttgtgttgtctttgcagAACTCCGAGATCAAATTGTCTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCAACGAGCTGGAAAACCTCAAGAGCAAACTTGGGGAGGTGATGGAGGAGgtaaccgtcctaggccagaagggccttttaaacttatagctcacttggtt Alignment from Pairagon AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG ttgaaaagtaaaataatgcctattttaaagagcttgtgttgtctttgcagAACTCCGAGATCAAATTGTCTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCAACGAGCTGGAAAACCTCAAGAGCAAACTTGGGGAGGTGATGGAGGAGgtaaccgtcctaggccagaagggccttttaaacttatagctcacttggtt Alignment from Exonerate_protein2genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG ttgaaaagtaaaataatgcctattttaaagagcttgtgttgtctttgcagAACTCCGAGATCAAATTGTCTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCAACGAGCTGGAAAACCTCAAGAGCAAACTTGGGGAGGTGATGGAGGAGgtaaccgtcctaggccagaagggccttttaaacttatagctcacttggtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG ttgaaaagtaaaataatgcctattttaaagagcttgtgttgtctttgcagAACTCCGAGATCAAATTGTCTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCAACGAGCTGGAAAACCTCAAGAGCAAACTTGGGGAGGTGATGGAGGAGgtaaccgtcctaggccagaagggccttttaaacttatagctcacttggtt #### 9130011E15Rik_ID9639_22 --> 2 - 2 Original Alignment tcCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCag ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagtcCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCaggtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat Alignment from CESAR tcCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCag ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagtcCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCaggtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat Alignment from Spaln_aa2Genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagTCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCAGgtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat Alignment from Spaln_nt2Genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagTCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCAGgtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat Alignment from Pairagon TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagTCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCAGgtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat Alignment from Exonerate_protein2genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagTCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCAGgtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat Alignment from Exonerate_coding2genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagTCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCAGgtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat Alignment from GeneWise TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctatgtatccatgagcttgacaacgtttttaccaacttgttccagTCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCGCTGGTGAATATCAGgtgagtaatggaagtttctttcagagttcgctgctcatcgagagattcat #### 9130011E15Rik_ID9653_18 --> 2 - 2 Original Alignment acCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATct ggagtacatttgattgtgattgatataatctcacccattctgttttgtagacCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATctgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa Alignment from CESAR acCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATct ggagtacatttgattgtgattgatataatctcacccattctgttttgtagacCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATctgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa Alignment from Spaln_aa2Genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT ggagtacatttgattgtgattgatataatctcacccattctgttttgtagACCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATCTgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa Alignment from Spaln_nt2Genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT ggagtacatttgattgtgattgatataatctcacccattctgttttgtagACCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATCTgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa Alignment from Pairagon ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT ggagtacatttgattgtgattgatataatctcacccattctgttttgtagACCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATCTgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa Alignment from Exonerate_protein2genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT ggagtacatttgattgtgattgatataatctcacccattctgttttgtagACCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATCTgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa Alignment from Exonerate_coding2genome ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT ggagtacatttgattgtgattgatataatctcacccattctgttttgtagACCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATCTgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa Alignment from GeneWise ACCTAATGGTGGAGTTCATTGTAACACACATGATGAAGGAATTCCCTATGGATCTCTATCT ggagtacatttgattgtgattgatataatctcacccattctgttttgtagACCTAATGGTGGAGTTCATTGTAACACACATGATGAAAGAATTCCCTATGGATCTCTATCTgtaagtaacatatttcattttacatgttataaagaatcaagtgatagaaa #### 9130011E15Rik_ID9654_17 --> 0 - 1 Original Alignment CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGg tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGggtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt Alignment from CESAR CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGg tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGggtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt Alignment from Spaln_aa2Genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGG tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGGgtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt Alignment from Spaln_nt2Genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGG tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGGgtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt Alignment from Pairagon CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGG tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGGgtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt Alignment from Exonerate_protein2genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGG tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGGgtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt Alignment from Exonerate_coding2genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGG tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGGgtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt Alignment from GeneWise CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGG tctcaagtctctgctaattatctctcttgtcttcttttcttcttctgtagCCCATGAGACATAGGAAGAAGGCTGCTGATAAGAACCTTCCCTGCCGGCCCCTGGTGTGTGCAGTCCTGGgtgagtaaagaatacaggcaggagagcacagttgaagcctcagtgactgt #### 9130011E15Rik_ID9670_8 --> 0 - 0 Original Alignment TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga Alignment from CESAR TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga Alignment from Spaln_aa2Genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga Alignment from Spaln_nt2Genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga Alignment from Pairagon TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga Alignment from Exonerate_protein2genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga Alignment from Exonerate_coding2genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga Alignment from GeneWise TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cagtctccctttacttggtcacactgtctgttttgttgatgcttttacagTCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGATGACGAGGCTACACTGAATgtgagtatccagaacctacatgttttgctgttgtcttacttgcatgcaga #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from CESAR GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Pairagon GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta #### 9130011E15Rik_ID9677_4 --> 0 - 0 Original Alignment ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgcaggatgccagatgtgggcatgactgaacagctgtctgacagcttacgt Alignment from CESAR ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgcaggatgccagatgtgggcatgactgaacagctgtctgacagcttacgt Alignment from Spaln_aa2Genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgcaggatgccagatgtgggcatgactgaacagctgtctgacagcttacgt Alignment from Spaln_nt2Genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgcaggatgccagatgtgggcatgactgaacagctgtctgacagcttacgt Alignment from Pairagon ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgcaggatgccagatgtgggcatgactgaacagctgtctgacagcttacgt Alignment from Exonerate_protein2genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgcaggatgccagatgtgggcatgactgaacagctgtctgacagcttacgt Alignment from Exonerate_coding2genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgcaggatgccagatgtgggcatgactgaacagctgtctgacagcttacgt Alignment from GeneWise ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAGAACTTGATGGAGAG ccctagtccagagactccttgtctaaaagactctgtcccttctcacccagACCTTGTGTGCACTTATTCGAGGTGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGGCAGGATGCCAGATgtgggcatgactgaacagctgtctgacagcttacgt #### A430093F15Rik_ID3006_2 --> 0 - 2 Original Alignment GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGAtg gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGAtggtctgagtgtgcgagagaaggttggggctgccccctggcctctgaactga Alignment from CESAR GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGAtg gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGAtggtctgagtgtgcgagagaaggttggggctgccccctggcctctgaactga Alignment from Spaln_aa2Genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGATGgtctgagtgtgcgagagaaggttggggctgccccctggcctctgaactga Alignment from Spaln_nt2Genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGATGgtctgagtgtgcgagagaaggttggggctgccccctggcctctgaactga Alignment from Pairagon GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGATGgtctgagtgtgcgagagaaggttggggctgccccctggcctctgaactga Alignment from Exonerate_protein2genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGATGgtctgagtgtgcgagagaaggttggggctgccccctggcctctgaactga Alignment from Exonerate_coding2genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGATGgtctgagtgtgcgagagaaggttggggctgccccctggcctctgaactga Alignment from GeneWise GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGA---------------------------------------------------- gtgccattttatgaaagtctgaaaataattggaaacaccttttctctcagGGAAATATGGCCCGAGGAAGATGGCGTGAAAGCTGTGCTGGTGGCCAGAAGGGATCAGAGCCAGCTGGAGCAACGAGTCAGGGAAGACTCTCAAAGCTCAGTTTCCTTGGATGGTCTGAGTGTGCGAGAGAAGGTTGGGGCTGCCCCCTGGCCTCTGAACTGA #### A630007B06Rik_ID12186_11 --> 0 - 1 Original Alignment GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAggtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct Alignment from CESAR GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAggtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct Alignment from Spaln_aa2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct Alignment from Spaln_nt2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct Alignment from Pairagon GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct Alignment from Exonerate_protein2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct Alignment from Exonerate_coding2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct Alignment from GeneWise GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgttggttttcttgtcaatttctctgattctcttttatagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCGCAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggtctgtgttgcttgtctttctgagagctctggtcaggtgcgctgct #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg #### A630007B06Rik_ID12191_6 --> 0 - 0 Original Alignment GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt Alignment from CESAR GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt Alignment from Spaln_aa2Genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt Alignment from Spaln_nt2Genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt Alignment from Pairagon GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt Alignment from Exonerate_protein2genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt Alignment from Exonerate_coding2genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt Alignment from GeneWise GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG tcctccaccttgctgttactatacaaagactttgctttctgtgtggacagGAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAGgtaaaattccttggtgagaagaatgttagcagacctctgtgctcatgtgt #### AI846148_ID2141_5 --> 2 - 1 Original Alignment acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagatCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAggtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat Alignment from CESAR acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagatCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAggtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat Alignment from Spaln_aa2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagATCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAGgtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat Alignment from Spaln_nt2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagATCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAGgtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat Alignment from Pairagon ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagATCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAGgtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat Alignment from Exonerate_protein2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagATCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAGgtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat Alignment from Exonerate_coding2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagATCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAGgtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat Alignment from GeneWise ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataggctctgttgtcacactgccagATCCTCCATCCCCTGAGTCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACACTTTACTGATGGCAGCTTCCCCCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTGCCCCAGCCGCAAAACCCCTCATCAGgtgagacctgctaggaggggccagtgaaggatgctgagtccctggatcat #### Abcc2_ID8820_4 --> 0 - 0 Original Alignment CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc Alignment from CESAR CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc Alignment from Spaln_aa2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc Alignment from Spaln_nt2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc Alignment from Pairagon CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc Alignment from Exonerate_protein2genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc Alignment from Exonerate_coding2genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc Alignment from GeneWise CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG tgttctctgtcagccctcttcccagtggaactttcctgtttctctcccagCTCCTGGTGTTGGTGATTCAACACTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCCTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTCCAATTTCAGACACTGATACGAGCACTCGTGCAGgtaagcagaaaggggggatttcttacctacaaagatgcttgtcctagacc #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_coding2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc #### Abcc2_ID8824_8 --> 0 - 2 Original Alignment GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTCAAAAAAG---------AAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGgagtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct Alignment from CESAR GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTCA---------AAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGgagtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct Alignment from Spaln_aa2Genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTCA---------AAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGGAgtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct Alignment from Spaln_nt2Genome AAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTCAAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGGAgtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct Alignment from Pairagon GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTC---------AAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGGAgtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct Alignment from Exonerate_protein2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTCA---------AAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGGAgtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct Alignment from Exonerate_coding2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTCA---------AAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGGAgtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct Alignment from GeneWise GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaatttacaggtctgtggacatggttcattaacccatctcttacagGAAGACTCA---------AAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGGAgtaagtgcacaggacttgctgccccctcttccagctttcttcaagttcct #### Abcc2_ID8843_27 --> 0 - 0 Original Alignment ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg Alignment from CESAR ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg Alignment from Spaln_aa2Genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg Alignment from Spaln_nt2Genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg Alignment from Pairagon ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg Alignment from Exonerate_protein2genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg Alignment from Exonerate_coding2genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg Alignment from GeneWise ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG gtatatgtgtgtgtagtggtgtatgcttcacaaatcctttgcccttctagATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtaagtgttatcaaaactcaggtgaaggtccccaacacactctcaagagg #### Abcc2_ID8847_31 --> 1 - 2 Original Alignment cATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACaa cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagcATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACaagtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta Alignment from CESAR cATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACaa cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagcATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACaagtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta Alignment from Spaln_aa2Genome CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagCATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACAAgtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta Alignment from Spaln_nt2Genome CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagCATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACAAgtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta Alignment from Pairagon CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagCATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACAAgtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta Alignment from Exonerate_protein2genome CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagCATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACAAgtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta Alignment from Exonerate_coding2genome CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagCATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACAAgtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta Alignment from GeneWise CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA cttcaccctagttttttgagtttatatgcaagccctgtgccttcccccagCATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTCCGAAAATCCAAAATCCTGGTCCTGGATGAAGCCACAGCTGCTGTGGATCTAGAGACGGATAGCCTTATTCAGACAACCATCCGGAACAAGTTCTCCCAGTGCACAGTCATCACTATTGCACACAGGCTGCACACCATCATGGACAGTGACAAgtaagtgtatgagcgtcattcacagcaactagttgagggggcagcaccta #### Abhd17b_ID4925_2 --> 1 - 2 Original Alignment aTACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAaa acaatggattatttacttccaacttttttgagtatattttcttttaacagaTACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAaagtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt Alignment from CESAR aTACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAaa acaatggattatttacttccaacttttttgagtatattttcttttaacagaTACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAaagtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt Alignment from Spaln_aa2Genome ATACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAA acaatggattatttacttccaacttttttgagtatattttcttttaacagATACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAAgtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt Alignment from Spaln_nt2Genome ATACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAA acaatggattatttacttccaacttttttgagtatattttcttttaacagATACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAAgtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt Alignment from Pairagon ATACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAA acaatggattatttacttccaacttttttgagtatattttcttttaacagATACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAAgtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt Alignment from Exonerate_protein2genome ATACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAA acaatggattatttacttccaacttttttgagtatattttcttttaacagATACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAAgtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt Alignment from Exonerate_coding2genome ATACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAA acaatggattatttacttccaacttttttgagtatattttcttttaacagATACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAAgtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt Alignment from GeneWise ATACGGCATTCGTCCTGAAAATGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAA acaatggattatttacttccaacttttttgagtatattttcttttaacagATACGGCATTCGTCCTGAAAACGTGATTATATATGGCCAGAGCATAGGGACAGTGCCATCTGTGGACCTGGCTGCTCGCTATGAGAGTGCTGCTGTTATTCTTCATTCTCCTCTCACCTCAGGAATGCGAGTTGCTTTCCCTGATACTAAGAAGACCTACTGTTTTGATGCATTCCCAAAgtaaattcaatattcagacacattgcacaccaaggtgtcccagagctttt #### Acsl5_ID11601_6 --> 2 - 0 Original Alignment ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagctGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac Alignment from CESAR ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagctGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac Alignment from Spaln_aa2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagCTGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac Alignment from Spaln_nt2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagCTGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac Alignment from Pairagon CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagCTGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac Alignment from Exonerate_protein2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagCTGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac Alignment from Exonerate_coding2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagCTGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac Alignment from GeneWise CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG tcactcaacagaatactatagtgacttcatttttttttcctttctccaagCTGATATCCCTGTGGTCATCTGTGATACACCCCAGAAGGCGACAATGGTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCTTGAAGACGATTATCCTCATGGACCCTTTTGATGATGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtaagtgtcaaaaacagattgcagccagtaggtgatttattgctatgaac #### Acsl5_ID11606_11 --> 0 - 0 Original Alignment GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg Alignment from CESAR GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg Alignment from Spaln_aa2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg Alignment from Spaln_nt2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg Alignment from Pairagon GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg Alignment from Exonerate_protein2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg Alignment from Exonerate_coding2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg Alignment from GeneWise GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ccgtcttcagtgatccaggacactgagccctgcgtggggttttctttcagGGTATCTTATTTTCCTGTGGGGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTTTCCTACAGTGCCTCGACTCCTAAACAGGGTCTATGATAAGgtgagtgacttgcttctacttgcattattcggaaaggcttggagggactg #### Acsl5_ID11613_18 --> 0 - 0 Original Alignment TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata Alignment from CESAR TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata Alignment from Spaln_aa2Genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata Alignment from Spaln_nt2Genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata Alignment from Pairagon TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata Alignment from Exonerate_protein2genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata Alignment from Exonerate_coding2genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata Alignment from GeneWise TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA tcagattagtctgaaggccttatctatccgtttctttctccatttatcagTCATTCCTTATTGGTGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATTGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAAgtactcatggctcaaaatgttctcgcatgattgagaatgtgactcaaata #### Acta2_ID6910_4 --> 0 - 1 Original Alignment ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTggtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa Alignment from CESAR ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTggtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa Alignment from Spaln_aa2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTGgtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa Alignment from Spaln_nt2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTGgtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa Alignment from Pairagon ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTGgtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa Alignment from Exonerate_protein2genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTGgtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa Alignment from Exonerate_coding2genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTGgtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa Alignment from GeneWise ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tatgtaacactgaaagcaccatttaacttggatatcttctattttcatagATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTGgtgagaggccaggaaggtggggaccttgatcaaaatgaatcccatcgtaa #### Acta2_ID6911_3 --> 0 - 0 Original Alignment ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac Alignment from CESAR ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac Alignment from Spaln_aa2Genome ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac Alignment from Spaln_nt2Genome ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac Alignment from Pairagon ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac Alignment from Exonerate_protein2genome ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac Alignment from Exonerate_coding2genome ATCTGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac Alignment from GeneWise ---TGGCACCACTCTTTCTATAACGAGCTTCGTGTGGCCCCTGAAGAGCATCCGACACTGCTGACAGAGGCACCACTGAACCCTAAGGCCAACCGGGAGAAAATGACCCAG tgcagtgcaaaaaaacggattaccatgaggaccctctactttgtcctcagATCTGGCGCCACTCTTTCTATAACGAGCTTCATGTGGCCCCTGAAGAGCATCCAACACTTCTGACAGAGGCACCACTGAACCCTAAGCCCAACCGGGAGAAAATGACCCAGgtgggtatctgtcccaagatctaaccctggtgaatctggggcctggcaac #### Actn3_ID698_12 --> 2 - 2 Original Alignment gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacaggcAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCaagtaacgatggccagagaccctgcctcatccccccctcattgagccccacc Alignment from CESAR gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacaggcAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCaagtaacgatggccagagaccctgcctcatccccccctcattgagccccacc Alignment from Spaln_aa2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacagGCAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaacgatggccagagaccctgcctcatccccccctcattgagccccacc Alignment from Spaln_nt2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacagGCAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaacgatggccagagaccctgcctcatccccccctcattgagccccacc Alignment from Pairagon GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacagGCAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaacgatggccagagaccctgcctcatccccccctcattgagccccacc Alignment from Exonerate_protein2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacagGCAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaacgatggccagagaccctgcctcatccccccctcattgagccccacc Alignment from Exonerate_coding2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacagGCAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaacgatggccagagaccctgcctcatccccccctcattgagccccacc Alignment from GeneWise GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgacactccagctgtggcggcctctgggtcatgtgttgctgctcatacagGCAAAGAGGAAACGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaacgatggccagagaccctgcctcatccccccctcattgagccccacc #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct Alignment from Pairagon GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct Alignment from GeneWise GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ggggtctccagggtagcttaccctaaacatttgtgtttatctatctgcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTACCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGgtgagtctggggccagagggccccttcccactgtgcaccgcacctgtcct #### Actn3_ID703_7 --> 0 - 1 Original Alignment GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAg agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAggtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc Alignment from CESAR GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAg agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAggtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc Alignment from Spaln_aa2Genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAGgtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc Alignment from Spaln_nt2Genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAGgtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc Alignment from Pairagon GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAGgtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc Alignment from Exonerate_protein2genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAGgtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc Alignment from Exonerate_coding2genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAGgtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc Alignment from GeneWise GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG agtctctgccctcagctgacctttcatgtttataatttttttaattatagGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAGgtaggccaatgaatggaagcagccttaaatactcctcacctactctcccc #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg ccgggctcccactcatgacctttgaccctgaacacaatctcctcctataggaGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg ccgggctcccactcatgacctttgaccctgaacacaatctcctcctataggaGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG ccgggctcccactcatgacctttgaccctgaacacaatctcctcctatagGAGAGAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtaagtaggggacaaaaggcatggactccggggagtaaagaggtttcttt #### Add3_ID11210_2 --> 0 - 1 Original Alignment GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGa gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGagtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca Alignment from CESAR GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGa gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGagtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca Alignment from Spaln_aa2Genome GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGA gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGAgtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca Alignment from Spaln_nt2Genome GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGA gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGAgtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca Alignment from Pairagon GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGA gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGAgtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca Alignment from Exonerate_protein2genome GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGA gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGAgtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca Alignment from Exonerate_coding2genome GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGA gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGAgtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca Alignment from GeneWise GCCTTTCGGGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGATTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGA gagacccatgtgagattcctgtgctcagacccttgccgtccctcttacagGCCTTTCGAGAAGACCTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGACACAACCCAAGTGGCTTACTAGCATTACAGCAGATTGCGGATTACATTGTGACCAGCACCTTCTCGGGCTTCTCCTCTCCCTCCCTGAgtatgtttgctctccctgttgggatgcttgctgttctctgcttgacggca #### Add3_ID11213_5 --> 0 - 0 Original Alignment GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac Alignment from CESAR GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac Alignment from Spaln_aa2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac Alignment from Spaln_nt2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac Alignment from Pairagon GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac Alignment from Exonerate_protein2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac Alignment from Exonerate_coding2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac Alignment from GeneWise GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG tagatttgatacatgtgtgccaatgaaaagaaatgtttttttgttcctagGTAAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACGCGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaagacagccatgtgccaaatacaaagtcctgtttatcttcccaataac #### Add3_ID11214_6 --> 0 - 0 Original Alignment GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc Alignment from CESAR GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc Alignment from Spaln_aa2Genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc Alignment from Spaln_nt2Genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc Alignment from Pairagon GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc Alignment from Exonerate_protein2genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc Alignment from Exonerate_coding2genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc Alignment from GeneWise GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG caatggtgatgtgcagaaactatgtgtgggtttctctcactgggttgcagGTGTCATCCATGAAGTGTGGGATCCTTCTAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTCCAGGCTGTAAGgtaagtactgctctgtaagggcttcctctgttgctgctgctgcccttggc #### Add3_ID11216_8 --> 0 - 0 Original Alignment GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg Alignment from CESAR GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg Alignment from Spaln_aa2Genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg Alignment from Spaln_nt2Genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg Alignment from Pairagon GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg Alignment from Exonerate_protein2genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg Alignment from Exonerate_coding2genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg Alignment from GeneWise GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG ctctgtcactgtccctacacttgcgtatggatttgttttgtcctttcaagGTGCAGGCAGTAGCAGGGGCAGGCGGAATAGACAATCTGCTCGTACTAGATCTTCAGAAATTTAAAGCTTTCACCCACGGTGTTGCCATGTCTGGAGGAGGTGGTGTGAACATGGCTTCCCATCAGAAGTGGAGGGTTGGCGAGATTGAGTTTGGAGGGCAGATGAGGACCCTGGACAACTTGgtaagtgagatttggacataggccttgagtttcctgtctatggactcatg #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctaggGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAgggtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from CESAR gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctaggGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAgggtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Spaln_aa2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Spaln_nt2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Pairagon GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Exonerate_protein2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from Exonerate_coding2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga Alignment from GeneWise GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cctccaaccccaaccttcttcctctttgcaccccacccaccgtgttctagGGGCACACACGGGTACATGGCCCCCGAAGTCCTACAAAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGAGGgtgagctggctagcccggacggggaatccagataggaagtgggggggaga #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagtGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagtGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Exonerate_coding2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag #### Afap1l2_ID12253_10 --> 0 - 1 Original Alignment CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATg cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATggtaactaggccaggggcctctacctcatgattgagagagcaatactattg Alignment from CESAR CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATg cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATggtaactaggccaggggcctctacctcatgattgagagagcaatactattg Alignment from Spaln_aa2Genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATGgtaactaggccaggggcctctacctcatgattgagagagcaatactattg Alignment from Spaln_nt2Genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATGgtaactaggccaggggcctctacctcatgattgagagagcaatactattg Alignment from Pairagon CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATGgtaactaggccaggggcctctacctcatgattgagagagcaatactattg Alignment from Exonerate_protein2genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATGgtaactaggccaggggcctctacctcatgattgagagagcaatactattg Alignment from Exonerate_coding2genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATGgtaactaggccaggggcctctacctcatgattgagagagcaatactattg Alignment from GeneWise CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG cagaaccatttgcgggaggtgatacccgtgccccctactgtatcttcaagCCAGACATAGCTGAGAAGTACCTGTCAGCAGCAGAGTATGGGATCACCATCAATGGCCACCCTGAGATCCCAGAGACCAAAGATGgtaactaggccaggggcctctacctcatgattgagagagcaatactattg #### Afap1l2_ID12260_4 --> 2 - 1 Original Alignment gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaaggtTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAggtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc Alignment from CESAR gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaaggtTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAggtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc Alignment from Spaln_aa2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaagGTTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAGgtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc Alignment from Spaln_nt2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaagGTTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAGgtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc Alignment from Pairagon GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaagGTTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAGgtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc Alignment from Exonerate_protein2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaagGTTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAGgtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc Alignment from Exonerate_coding2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaagGTTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAGgtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc Alignment from GeneWise GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG gaggcaccaaatcacatgaactcacatcctcctttctttcttttttaaagGTTCTGATGAGGAATATATTTACATGAACAAAGTGTCAGTCAATGGGGAACAAAACACAGCATCTCCAGACAAAGgtgagtggcccttcaggctgccaggctgcctgtcttcagacaaatgagcc #### Afap1l2_ID12261_3 --> 2 - 1 Original Alignment ccCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCa ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagccCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCagtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc Alignment from CESAR ccCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCa ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagccCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCagtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc Alignment from Spaln_aa2Genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagCCCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCAgtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc Alignment from Spaln_nt2Genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagCCCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCAgtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc Alignment from Pairagon CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagCCCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCAgtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc Alignment from Exonerate_protein2genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagCCCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCAgtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc Alignment from Exonerate_coding2genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagCCCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCAgtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc Alignment from GeneWise CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcctgctgggtagcatttgttgtactctaactcttctttcctctcctagCCCTGGAACAGCTGCTGACAGAGCTGGACGACTTCCTTAAAGTCCTCGACCAAGAAAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTATCTGAGCTCCTGTGGCTTTACACCAAGAGCAGCAgtaatgatgggccaggggcctcaggtagtctggcgagtgtccatctgatc #### Aip_ID333_2 --> 0 - 0 Original Alignment GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc Alignment from CESAR GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc Alignment from Spaln_aa2Genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc Alignment from Spaln_nt2Genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc Alignment from Pairagon GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc Alignment from Exonerate_protein2genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc Alignment from Exonerate_coding2genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc Alignment from GeneWise GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctttagtgaggctttttaacttcccctgtgacattcttcttgtttccagGCTACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTAATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACAATTGTGTGCACCATGCGTGAGGGGGAGCTTGCCCAGTTCCTCTGTGACATCAAGgtacctgttctgggacatgtgctgtgtgtcctatcttcagggctcctgcc #### Ak3_ID6205_3 --> 2 - 0 Original Alignment gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacaggaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag Alignment from CESAR gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacaggaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag Alignment from Spaln_aa2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacagGATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag Alignment from Spaln_nt2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacagGATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag Alignment from Pairagon GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacagGATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag Alignment from Exonerate_protein2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacagGATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag Alignment from Exonerate_coding2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacagGATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag Alignment from GeneWise GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG taacactctttctttcttgcctgcatctctgtgctgtgtgtctctcacagGATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAACGTGCCCTTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTACACAACATTGAATTCAACCCTCCCAAGACTGTGgtgagtgcctgtagcaagctgagctgacatccactctaacaggcatttag #### Aldh18a1_ID7971_12 --> 0 - 0 Original Alignment GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa Alignment from CESAR GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa Alignment from Spaln_aa2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa Alignment from Spaln_nt2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa Alignment from Pairagon GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa Alignment from Exonerate_protein2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa Alignment from Exonerate_coding2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa Alignment from GeneWise GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gacagacatcattgtcacactgactgccgtttcttgacgttctctttcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGCAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaaggggcctgctggtcccacccagataggagcgggtgtcatctatcaa #### Aldh1a7_ID4808_10 --> 0 - 0 Original Alignment ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct Alignment from CESAR ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct Alignment from Spaln_aa2Genome ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct Alignment from Spaln_nt2Genome ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct Alignment from Pairagon ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct Alignment from Exonerate_protein2genome ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct Alignment from Exonerate_coding2genome ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct Alignment from GeneWise ATTGACAAGGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGCCAAAGAGGAG tttaatttatctttatcattgctcctttgctgtttgtcgtcctcacctagATTGACACAGAACAACACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTCGCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCTAATGTGACTGATGAGATGCATATTGCCAAAGAGGAGgtgagttttacccatgggtctattgttgttgtgtttaccgtgttctctct #### Aldh1a7_ID4816_2 --> 0 - 0 Original Alignment ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt Alignment from CESAR ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt Alignment from Spaln_aa2Genome ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt Alignment from Spaln_nt2Genome ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt Alignment from Pairagon ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt Alignment from Exonerate_protein2genome ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt Alignment from Exonerate_coding2genome ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt Alignment from GeneWise ATCTTTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctccaacatatttaaatgctacttattcattttctttgtcttttcagACCTTTATAAACAATGAATGGCATGATTCAGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGgtaagttgctcagcatctgccgttttttactttgcaccaagaatcttggt #### Aldh3b1_ID205_2 --> 0 - 0 Original Alignment TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact Alignment from CESAR TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact Alignment from Spaln_aa2Genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact Alignment from Spaln_nt2Genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact Alignment from Pairagon TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact Alignment from Exonerate_protein2genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact Alignment from Exonerate_coding2genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact Alignment from GeneWise TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ataaagtgataccagcccaattcagcccccttctcttgcccactcggcagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAAAAAGTGTCCAAGAATCTGgtgagttggaggagggggtgtggcagggtggtaggtgggctttgggaact #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagccCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagccCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagCCCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagCCCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagCCCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagCCCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagCCCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG tcaccgtgacaacaagcaaggtctaactaatcaatcaatttaacttctagCCCCGACAGTGCTGGTAGACGTCCAGGAGACAGAGCCCCTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGCGGGAAAAGCCTCTGGCGCTGTATGCCTTTTCAAACAACAACCAGgtaaggcctgttggcgctgggccatagagtgggtgaaaaggggacagaca #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccaggaAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccaggaAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt #### Ankrd13d_ID469_4 --> 0 - 1 Original Alignment GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGg ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGggtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg Alignment from CESAR GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGg ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGggtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg Alignment from Spaln_aa2Genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGGgtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg Alignment from Spaln_nt2Genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGGgtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg Alignment from Pairagon GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGGgtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg Alignment from Exonerate_protein2genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGGgtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg Alignment from Exonerate_coding2genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGGgtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg Alignment from GeneWise GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG ggctgtggcacctgccatggctcctaacttttcatgttctctcctgtcagGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGGgtgagtaggcctcagttgactgcagagacttggagtgggccatttggggg #### Ankrd13d_ID470_3 --> 2 - 0 Original Alignment tcCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagtcCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc Alignment from CESAR tcCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagtcCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc Alignment from Spaln_aa2Genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagTCCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc Alignment from Spaln_nt2Genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagTCCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc Alignment from Pairagon TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagTCCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc Alignment from Exonerate_protein2genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagTCCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc Alignment from Exonerate_coding2genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagTCCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc Alignment from GeneWise TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG gggtgcctggaggcactaagagggctacctcatgtatttgtttttcatagTCCTGCAGGAGGCAGTAAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACCCCGTCAGgtgaggccatagagtaaaaatgtggtataacaacaggcactccgttttcc #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAggtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAggtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG ccttgctttggtcctctcttaccgtgtatctcaccgcgcgccgcccccagCATGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCAGgtattttacagggcagtgggttcccctttaagattatcttccatgttggt #### Ankrd1_ID7095_8 --> 0 - 0 Original Alignment GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATT---CTCTTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca Alignment from CESAR GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATT---CTCTTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca Alignment from Spaln_aa2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATTCTC---TTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca Alignment from Spaln_nt2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATTC---TCTTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca Alignment from Pairagon GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATT---CTCTTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca Alignment from Exonerate_protein2genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATT---CTCTTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca Alignment from Exonerate_coding2genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATT---CTCTTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca Alignment from GeneWise GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggactcacttcctcgcttcccagatctggtgattttttttttaattttagGAAGGAGACACCCCATTGCATGATGCTGTGAGGCTAAACCGCTATAAGATGATT---CTCTTGATGACTTTCGGTGCGGACCTCAAGGTGAAGAACTGTgtaagtagtcaaatcaacaagggcacaactgttctgcttttgagtttcca #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca #### Ankrd2_ID8368_2 --> 0 - 0 Original Alignment AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCTAGAG------AAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga Alignment from CESAR AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCTA------GAGAAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga Alignment from Spaln_aa2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCTAGAG------AAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga Alignment from Spaln_nt2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCT------AGAGAAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga Alignment from Pairagon AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCTAG------AGAAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga Alignment from Exonerate_protein2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCTA------GAGAAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga Alignment from Exonerate_coding2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCTA------GAGAAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga Alignment from GeneWise AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG ggatcaaaaatcctatccttagtatcaattatctttgtttaccttcccagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTGCTAGAG------AAGCGCCTTGGGGTTCAGAGTCCTGCTTTACAAGAGTTTAAGgtaagtgtggaggaaggaagagtgtgtgctcaggcgacaggccagctaga #### Anxa1_ID4763_7 --> 0 - 0 Original Alignment GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc Alignment from CESAR GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc Alignment from Spaln_aa2Genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc Alignment from Spaln_nt2Genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc Alignment from Pairagon GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc Alignment from Exonerate_protein2genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc Alignment from Exonerate_coding2genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc Alignment from GeneWise GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG tacaacctacagaaaatcttgcattgcattttcctttattttctgtatagGGTGACCGTTGTCAGGGCTTGAGTGTGAATCAGGATTTGGCTGATACAGATGCCAGGgtgagtaaggatattcctacatctttactcctcattcatggaagcagatc #### Apba1_ID5230_3 --> 0 - 1 Original Alignment TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAggtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt Alignment from CESAR TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAggtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt Alignment from Spaln_aa2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt Alignment from Spaln_nt2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt Alignment from Pairagon TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt Alignment from Exonerate_protein2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt Alignment from Exonerate_coding2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt Alignment from GeneWise TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgtgctctgccctctttgaaactttcttcttttctcctgactagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggactgaagagaaaaatactgaatactggggtcactcatgaatctt #### Apba1_ID5231_4 --> 2 - 0 Original Alignment ttCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagttCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag Alignment from CESAR ttCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagttCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag Alignment from Spaln_aa2Genome TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagTTCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag Alignment from Spaln_nt2Genome TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagTTCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag Alignment from Pairagon TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagTTCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag Alignment from Exonerate_protein2genome TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagTTCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag Alignment from Exonerate_coding2genome TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagTTCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag Alignment from GeneWise TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAG cggtactccccccatgacatcatttgctgcatggggcatccccggctcagTTCCTGGACCATGTGACCCTGAAGACTTGATTGGTGGGATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCCAAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTAAGCCGGATCAAGgtaccgaggtctgcatgtctgaggtggtagggtgactgaggggacctaag #### Arhgap19_ID8267_6 --> 0 - 0 Original Alignment GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa Alignment from CESAR GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa Alignment from Spaln_aa2Genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa Alignment from Spaln_nt2Genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa Alignment from Pairagon GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa Alignment from Exonerate_protein2genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa Alignment from Exonerate_coding2genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa Alignment from GeneWise GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG gcacttcccagtacctaatgctctttgttctatgccttttgcttttctagGTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAGgtaagtgaggggtgtcacttagttggtaataggagatggtaacaggagaa #### Arhgap19_ID8270_3 --> 2 - 1 Original Alignment aaAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAa ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagaaAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGagtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag Alignment from CESAR aaAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAa ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagaaAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGagtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag Alignment from Spaln_aa2Genome AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagAAAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGAgtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag Alignment from Spaln_nt2Genome AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagAAAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGAgtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag Alignment from Pairagon AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagAAAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGAgtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag Alignment from Exonerate_protein2genome AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagAAAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGAgtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag Alignment from Exonerate_coding2genome AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagAAAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGAgtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag Alignment from GeneWise AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA ttgtactcttgatgcaattatagcctggatcatttttccttttcactcagAAAAAGGAGTGGTATTTGGATCTCCATTGACTGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAGAgtgagtgtatgcaatgcttcagtgttctatatttaatgaagacttgccag #### Arl3_ID9956_2 --> 0 - 0 Original Alignment GGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccacagGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat Alignment from CESAR GGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccacagGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat Alignment from Spaln_aa2Genome GGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccacagGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat Alignment from Spaln_nt2Genome GGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccacagGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat Alignment from Pairagon GGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccacagGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat Alignment from Exonerate_protein2genome ATGGGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccaCAGGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat Alignment from Exonerate_coding2genome ATGGGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccaCAGGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat Alignment from GeneWise ATGGGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGGGCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAG ctaatcctgccgtgccaccaagcaaacttttctctctgctctccccaCAGGGCCTACTCTCTATTTTGCGCAAATTGAAAAGTACACCAGACCAGGAGGTGCGAATCCTACTACTGGGCTTGGATAATGCGGGCAAGACTACCTTACTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACCTACACAGgtgagtgccccctggatccaggtgctcttgtcaccatagaagatgaagat #### Asah2_ID6658_16 --> 0 - 0 Original Alignment GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt Alignment from CESAR GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt Alignment from Spaln_aa2Genome GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt Alignment from Spaln_nt2Genome GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt Alignment from Pairagon GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt Alignment from Exonerate_protein2genome GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt Alignment from Exonerate_coding2genome GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt Alignment from GeneWise GCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACG aaactatttcgatgcaaaactacctgtaactgtctcttttggcatccaagGCTCAGCAGTACAAAGCAGCATCTACAATTTATGGACCACACACCCTGTCTGCATACATCCAACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGgtgagtagaccatggtgtgtgtgtgtgtgtgtgtgtcagtctgtgtctgt #### Asah2_ID6659_15 --> 0 - 0 Original Alignment GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat Alignment from CESAR GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat Alignment from Spaln_aa2Genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat Alignment from Spaln_nt2Genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat Alignment from Pairagon GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat Alignment from Exonerate_protein2genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat Alignment from Exonerate_coding2genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat Alignment from GeneWise GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG ccatatattaaaggtcatgagcagtgaactcaccccatctttctctccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAGgtgagttaaaaagttgtcattactttttttattacatagtctttctggat #### Asah2_ID6660_14 --> 1 - 0 Original Alignment aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagaACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa Alignment from CESAR aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagaACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa Alignment from Spaln_aa2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagAACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa Alignment from Spaln_nt2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagAACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa Alignment from Pairagon AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagAACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa Alignment from Exonerate_protein2genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagAACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa Alignment from Exonerate_coding2genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagAACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa Alignment from GeneWise AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA aattccatttttcttgaatagttgacattgctcttcctctttctctgcagAACCATGTCAGGACGAAAATTTCGTGAGGCAATTAAAAAAgtacaatagatatcaaatacaactcctgtgaatttatatttgaggaggaa #### Asah2_ID6663_11 --> 0 - 1 Original Alignment GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGggtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg Alignment from CESAR GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGggtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg Alignment from Spaln_aa2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg Alignment from Spaln_nt2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg Alignment from Pairagon GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg Alignment from Exonerate_protein2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg Alignment from Exonerate_coding2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg Alignment from GeneWise GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ctcaacctgtgtctctttcttaatattttgccttcttttgtcttctctagGTGAAGACATGTAAACCTGCCCTGGGCTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtaagtgaaaggagtagggcatctgtttgctgatgaggcctgaactgtgg #### Asah2_ID6668_6 --> 1 - 2 Original Alignment gTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCag ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcaggTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCaggtaagaccttcctttccttctttaaatctttctccttaactcccttcctt Alignment from CESAR gTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCag ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcaggTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCaggtaagaccttcctttccttctttaaatctttctccttaactcccttcctt Alignment from Spaln_aa2Genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGgtaagaccttcctttccttctttaaatctttctccttaactcccttcctt Alignment from Spaln_nt2Genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGgtaagaccttcctttccttctttaaatctttctccttaactcccttcctt Alignment from Pairagon GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGgtaagaccttcctttccttctttaaatctttctccttaactcccttcctt Alignment from Exonerate_protein2genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGgtaagaccttcctttccttctttaaatctttctccttaactcccttcctt Alignment from Exonerate_coding2genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGgtaagaccttcctttccttctttaaatctttctccttaactcccttcctt Alignment from GeneWise GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG ggggtgagtcactatgataaactgaccacctctttctctcttgtttgcagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGgtaagaccttcctttccttctttaaatctttctccttaactcccttcctt #### Asah2_ID6670_4 --> 0 - 0 Original Alignment GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAGT---GGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt Alignment from CESAR GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAGT---GGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt Alignment from Spaln_aa2Genome GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAGT---GGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt Alignment from Spaln_nt2Genome GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAG---TGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt Alignment from Pairagon GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAGT---GGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt Alignment from Exonerate_protein2genome GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAGT---GGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt Alignment from Exonerate_coding2genome GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAGT---GGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt Alignment from GeneWise GTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATGTTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGCCAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAG ctgagatgctataggattcttcttcgttaacaccaattttgtcttcacagGTCCTGAAGAGACTGGAGAGCAAATATGGCTCTCTGTATAGAAGAGACAATGTTATTCTGAGTGCTATTCACACACACTCTGGCCCAGCAGGGTTTTTTCAATATACACTCTATATACTCGCCAGT---GGATTCAGCAACCGGACCTTTCAGTACATAGTCTCAGGGATCATGAAGgtaggcgaagaacaccctagcagatacagcagccgcctttccttctcttt #### Asrgl1_ID2594_6 --> 2 - 1 Original Alignment gaGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAg tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcaggaGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAggtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat Alignment from CESAR gaGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAg tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcaggaGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAggtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat Alignment from Spaln_aa2Genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAGgtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat Alignment from Spaln_nt2Genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAGgtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat Alignment from Pairagon GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAGgtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat Alignment from Exonerate_protein2genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAGgtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat Alignment from Exonerate_coding2genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAGgtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat Alignment from GeneWise GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcacttgttgactgttgctgttcacttctcacgtttgtgattgcagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTAGAGCAAGgtgagtaggcaatgaaacaggtgcatagctagtacgacaggtaaatagat #### Atad1_ID6724_6 --> 0 - 0 Original Alignment GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag Alignment from CESAR GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag Alignment from Spaln_aa2Genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag Alignment from Spaln_nt2Genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag Alignment from Pairagon GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag Alignment from Exonerate_protein2genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag Alignment from Exonerate_coding2genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag Alignment from GeneWise GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT agccacctccctatgatattgatctgcctgaacatgtttgtatctttcagGTTATAGTAATGGGAGCTACCAACCGCCCTCAAGACCTTGATTCTGCTATAATGCGAAGAATGCCTACAAGATTTCATTTTAACCAGCCTgtacctagtctttattccagatccaaaaaccagatgattctgattgtaag #### Atad1_ID6726_4 --> 2 - 1 Original Alignment gtGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAg aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacaggtGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAggtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct Alignment from CESAR gtGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAg aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacaggtGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAggtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct Alignment from Spaln_aa2Genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacagGTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAGgtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct Alignment from Spaln_nt2Genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacagGTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAGgtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct Alignment from Pairagon GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacagGTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAGgtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct Alignment from Exonerate_protein2genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacagGTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAGgtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct Alignment from Exonerate_coding2genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacagGTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAGgtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct Alignment from GeneWise GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aaaaatccttatcttctttaagacaatagtgaccaccatgcctcccacagGTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAGATAGgtgagctatttcctatgtgagcatgttttaaaaagccatttaaaggtgct #### Atad1_ID6727_3 --> 0 - 1 Original Alignment GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAg tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGggtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc Alignment from CESAR GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAg tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGggtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc Alignment from Spaln_aa2Genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGGgtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc Alignment from Spaln_nt2Genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGGgtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc Alignment from Pairagon GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGGgtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc Alignment from Exonerate_protein2genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGGgtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc Alignment from Exonerate_coding2genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGGgtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc Alignment from GeneWise GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG tgtctacatgtataagttgtgacattcaggatttaaacatcctcttctagGTTACTTGGAGTGATATAGCAGGTTTAGATGATGTCATTACTGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAGGgtgaggttagaaatgttcttcatgaaacaactcaatgaaccttggcactc #### Atad1_ID6728_2 --> 0 - 0 Original Alignment GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag Alignment from CESAR GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag Alignment from Spaln_aa2Genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag Alignment from Spaln_nt2Genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag Alignment from Pairagon GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag Alignment from Exonerate_protein2genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag Alignment from Exonerate_coding2genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag Alignment from GeneWise GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT tcagtgcttaaacatcagaacaaagattaactcggttggttttgctgcagGCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCATgtgagcttctttcatctttccttctttagtgggacagacaagtgaggtag #### Atl3_ID2166_8 --> 0 - 1 Original Alignment GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAggtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc Alignment from CESAR GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAggtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc Alignment from Spaln_aa2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAGgtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc Alignment from Spaln_nt2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAGgtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc Alignment from Pairagon GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAGgtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc Alignment from Exonerate_protein2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAGgtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc Alignment from Exonerate_coding2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAGgtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc Alignment from GeneWise GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gaagattaccaaattgtctttggcttgttcttgtggctttctttctcaagGTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCTGATGTCACCTGTTATCTCTTACCACATCCAGGGCTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAATTGAAAGgtaatgtatagacattgtgagtgtccatgtgattggatctttggaatccc #### Atl3_ID2170_10 --> 0 - 0 Original Alignment GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga Alignment from CESAR GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga Alignment from Spaln_aa2Genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga Alignment from Spaln_nt2Genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga Alignment from Pairagon GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga Alignment from Exonerate_protein2genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga Alignment from Exonerate_coding2genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga Alignment from GeneWise GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttcgatacatttttgtaatggttcttcattgttcttttctagGCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCATCCGAAGTCCATGCTTCAGgtaggtaagtctttggtgttctaagtgacatctttatgtgctgggattga #### Atrnl1_ID12435_8 --> 0 - 1 Original Alignment GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCt agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCtgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa Alignment from CESAR GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCt agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCtgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa Alignment from Spaln_aa2Genome GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCT agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCTgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa Alignment from Spaln_nt2Genome GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCT agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCTgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa Alignment from Pairagon GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCT agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCTgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa Alignment from Exonerate_protein2genome GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCT agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCTgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa Alignment from Exonerate_coding2genome GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCT agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCTgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa Alignment from GeneWise GAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGATGAATTATGGGTGTTTAACGTACGCAGTCAATCATGGAGCACGAAAACCCCCACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCT agaaattcctattccatgcactgatgtcctcggtgtctttttttccacagGAAAACATCTTTATGTACGGAGGCAGAATGGAGACCAGTGATGGCAACGTCACCGAAGAATTATGGGTGTTTAACGTGCGCAGTCAATCATGGAGCACGAAAACCCCTACTGTCCTTGGCCACAGTCAGCAGTACGCTGTGGAGGGACACTCGGCACACATCATGGAGCTGGACAGTAGAGACGTGGTCATGATTGTCATATTTGGATATTCTGCAATATATGGCTATACCAGCAGCATACAGGAATACCATATCTgtaagtttttttaaaaatgtactttcttgaatggttgggagcatccttaa #### Atrnl1_ID12438_11 --> 2 - 2 Original Alignment ctTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATgg aattttttacagcttttcattccttcctttctccccccaactctccctagccTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATgggtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca Alignment from CESAR ctTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATgg aattttttacagcttttcattccttcctttctccccccaactctccctagccTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATgggtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca Alignment from Spaln_aa2Genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG aattttttacagcttttcattccttcctttctccccccaactctccctagCCTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATGGgtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca Alignment from Spaln_nt2Genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG aattttttacagcttttcattccttcctttctccccccaactctccctagCCTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATGGgtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca Alignment from Pairagon CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG aattttttacagcttttcattccttcctttctccccccaactctccctagCCTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATGGgtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca Alignment from Exonerate_protein2genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG aattttttacagcttttcattccttcctttctccccccaactctccctagCCTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATGGgtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca Alignment from Exonerate_coding2genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG aattttttacagcttttcattccttcctttctccccccaactctccctagCCTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATGGgtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca Alignment from GeneWise CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG aattttttacagcttttcattccttcctttctccccccaactctccctagCCTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGTCATTCTGCAGTTGTCATCAATGGgtcagtacttgatagtcaccttagaacatgtgtgcttgcagtttcccaca #### Atrnl1_ID12439_12 --> 1 - 1 Original Alignment gTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAg ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagaTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAggtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg Alignment from CESAR gTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAg ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagaTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAggtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg Alignment from Spaln_aa2Genome GTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAG ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagATCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAGgtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg Alignment from Spaln_nt2Genome GTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAG ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagATCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAGgtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg Alignment from Pairagon GTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAG ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagATCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAGgtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg Alignment from Exonerate_protein2genome GTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAG ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagATCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAGgtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg Alignment from Exonerate_coding2genome GTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAG ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagATCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAGgtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg Alignment from GeneWise GTCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGAAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAG ccattctgtcctgctttgctaaggtataatggtcctttcgtgtctttcagATCAATGTATATATTTGGTGGATTTTCTAGTGTACTCCTTAATGATATCCTTGTGTATAAACCCCCAAATTGCAAAGCTTTCCGAGATGAAGAACTGTGCAGGAACGCTGGTCCAGGGATAAAATGTGTTTGGAATAAGAATCACTGTGAATCTTGGGAGTCTGGGAATACAAATAATATTCTCAGAGCCAAGTGCCCTCCCAAGACAGgtaagttgcattcccttccaagctgctgtcaaacttctacaagaaccttg #### Atrnl1_ID12446_16 --> 0 - 1 Original Alignment AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAg agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAggtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg Alignment from CESAR AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAg agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAggtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg Alignment from Spaln_aa2Genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAGgtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg Alignment from Spaln_nt2Genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAGgtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg Alignment from Pairagon AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAGgtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg Alignment from Exonerate_protein2genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAGgtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg Alignment from Exonerate_coding2genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAGgtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg Alignment from GeneWise AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG agcagtgttgcctttaggccctatgaacctctgcttctctttcactgtagAAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGAGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTCTGTGAAAAGCCTGTAGgtgagtcgtcaagccaccggcctttctgagcatctatattttagccgctg #### Atrnl1_ID12488_27 --> 0 - 0 Original Alignment CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct Alignment from CESAR CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct Alignment from Spaln_aa2Genome CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct Alignment from Spaln_nt2Genome CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct Alignment from Pairagon CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct Alignment from Exonerate_protein2genome CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct Alignment from Exonerate_coding2genome CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct Alignment from GeneWise CAACTGCTTCGAGAACGACAGCAGATGGCCAGCCGTCCCTTTGCTTCTGTTGATGTAGCCCTGGAAGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAG tgatgcacttttatgtctatcttaaaactgcttcccttcctccaatgcagCAACTGCTTCGAGAACAACAGCAGATGGCCAGCCGTCCCCTTGCTTCTGTTGATGTAGCCCTAGACGTAGGAGCTGAACAGACAGACTTTCTGCGAGGGCCATTAGAAgtaaggacagtggtacagaggggaccagcataatttgggtatttgcctct #### B3gat3_ID2491_3 --> 1 - 0 Original Alignment gCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTG---CTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctaggCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc Alignment from CESAR gCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctaggCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc Alignment from Spaln_aa2Genome GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctagGCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc Alignment from Spaln_nt2Genome GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctagGCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc Alignment from Pairagon GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctagGCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc Alignment from Exonerate_protein2genome GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctagGCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc Alignment from Exonerate_coding2genome GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctagGCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc Alignment from GeneWise GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTGCTA---GTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG gaaggccaagctgatctggcccctcccttaacttcgttcttgttctctagGCTGGTACAAAAGGCAGAGCTAGTTCGGTTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTACTGTTAGTGGAGGATGCTGAGAGCCCTACCCCACTGGTCTCAGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACTCACCTCGCTGTCCTTACCCCCAAGGCTCAACGGCTGAGGGAAGGTGAGCCCGGCTGGATCCGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTGGACTGGCTCAGAGGAAAAGGAGGTGCTGTGGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGgtaaggcttgagattaaagacagagaaagagccaggtgggaccagctccc #### BC048609_ID1423_2 --> 0 - 1 Original Alignment TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGagtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac Alignment from CESAR TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGagtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac Alignment from Spaln_aa2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGAgtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac Alignment from Spaln_nt2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGAgtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac Alignment from Pairagon TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGAgtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac Alignment from Exonerate_protein2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGAgtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac Alignment from Exonerate_coding2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGAgtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac Alignment from GeneWise TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgtggtgtcagtctgcccctactggtccgcctcctctcctgttcacagTTCTCCCAAGTAATCAGCATTGGCTGGGCTGCCATGGGGCCACTCTACGCAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCGTTGACCATTCTGAgtagggggggaggtgtgcaaccaggaaggggagggttgagaccctgtgac #### BC049760_ID1439_4 --> 1 - 0 Original Alignment gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacaggCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag Alignment from CESAR gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacaggCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag Alignment from Spaln_aa2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacagGCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag Alignment from Spaln_nt2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacagGCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag Alignment from Pairagon GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacagGCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag Alignment from Exonerate_protein2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacagGCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag Alignment from Exonerate_coding2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacagGCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag Alignment from GeneWise GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggcttgggtctcagggggctgggctcgctctaatgttgtgatccacagGCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGgtgaaatcagcccaagagctgttctttgccttggctctgcccccccccag #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacaggGAAAAGGCAGACGTACCTTTGTCTGTGCAGTCACTTaggtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from CESAR gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacaggGAAAAGGCAGACGTACCTTTGTCTGTGCAGTCACTTaggtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCTTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCTTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Pairagon GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCTTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCTTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from Exonerate_coding2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagGGAAAAGGCAGACGTACCTTTGTCTGTGCAGTCACTTAGgtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta Alignment from GeneWise tctcctaagggttctcgtgaaagctgcctttttttatttttccaaaacagggaaaaggcagacgtacctttgtctgtgcagtcacttaggtaggagtccattgcagagagggtgggggggatgtccgtggacaacacta #### Best1_ID2629_10 --> 2 - 2 Original Alignment gtGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACag gttggcacatctatagagccctaccaagtccatttctcaatattcttcaggtGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACaggtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct Alignment from CESAR gtGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACag gttggcacatctatagagccctaccaagtccatttctcaatattcttcaggtGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACaggtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct Alignment from Spaln_aa2Genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG gttggcacatctatagagccctaccaagtccatttctcaatattcttcagGTGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACAGgtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct Alignment from Spaln_nt2Genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG gttggcacatctatagagccctaccaagtccatttctcaatattcttcagGTGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACAGgtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct Alignment from Pairagon GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG gttggcacatctatagagccctaccaagtccatttctcaatattcttcagGTGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACAGgtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct Alignment from Exonerate_protein2genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG gttggcacatctatagagccctaccaagtccatttctcaatattcttcagGTGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACAGgtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct Alignment from Exonerate_coding2genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG gttggcacatctatagagccctaccaagtccatttctcaatattcttcagGTGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACAGgtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct Alignment from GeneWise GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAGG gttggcacatctatagagccctaccaagtccatttctcaatattcttcagGTGATGGGCCGTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGCAGCATGCAGAGTCCTATCCCTACAGGtaagaccacccaaagagcctgcatttcctgtgcctgccatttgagttct #### Blnk_ID8059_12 --> 2 - 2 Original Alignment aaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGaa agggggcagacatatcactttaagactatagtgcctgccctttgccgcagaaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGaagtaagtaaccttccatttatttcctagttttgtacttaattatactttta Alignment from CESAR aaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGaa agggggcagacatatcactttaagactatagtgcctgccctttgccgcagaaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGaagtaagtaaccttccatttatttcctagttttgtacttaattatactttta Alignment from Spaln_aa2Genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA agggggcagacatatcactttaagactatagtgcctgccctttgccgcagAAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGAAgtaagtaaccttccatttatttcctagttttgtacttaattatactttta Alignment from Spaln_nt2Genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA agggggcagacatatcactttaagactatagtgcctgccctttgccgcagAAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGAAgtaagtaaccttccatttatttcctagttttgtacttaattatactttta Alignment from Pairagon AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA agggggcagacatatcactttaagactatagtgcctgccctttgccgcagAAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGAAgtaagtaaccttccatttatttcctagttttgtacttaattatactttta Alignment from Exonerate_protein2genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA agggggcagacatatcactttaagactatagtgcctgccctttgccgcagAAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGAAgtaagtaaccttccatttatttcctagttttgtacttaattatactttta Alignment from Exonerate_coding2genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA agggggcagacatatcactttaagactatagtgcctgccctttgccgcagAAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGAAgtaagtaaccttccatttatttcctagttttgtacttaattatactttta Alignment from GeneWise AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA agggggcagacatatcactttaagactatagtgcctgccctttgccgcagAAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCTACCCAGAAgtaagtaaccttccatttatttcctagttttgtacttaattatactttta #### Blnk_ID8060_11 --> 0 - 1 Original Alignment ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAg atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAggtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt Alignment from CESAR ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAg atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAggtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt Alignment from Spaln_aa2Genome ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAGgtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt Alignment from Spaln_nt2Genome ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAGgtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt Alignment from Pairagon ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAGgtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt Alignment from Exonerate_protein2genome ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAGgtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt Alignment from Exonerate_coding2genome ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAGgtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt Alignment from GeneWise ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG atatgctattgagttgctgacttgccttccttttgttgttttctgtttagACTCCCGTTCCTCCCCTACCAAATGCCTCCAATGTTTGTGAAGgtaagtgtatttattctgaaggtttaaggacgtacaccaaaaatcatttt #### Blnk_ID8064_7 --> 0 - 1 Original Alignment GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGg taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGggtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca Alignment from CESAR GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGg taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGggtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca Alignment from Spaln_aa2Genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGGgtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca Alignment from Spaln_nt2Genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGGgtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca Alignment from Pairagon GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGGgtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca Alignment from Exonerate_protein2genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGGgtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca Alignment from Exonerate_coding2genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGGgtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca Alignment from GeneWise GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactctggatgtatagcaagcatgctctctggcttttctttgttttcagGCTGATTATGTGGTCCCTGTCGAAGATAACGATGAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAGAAGGgtaagttttggagtttggggtgcttgaaacctccctgctgcctggcacca #### Blnk_ID8068_3 --> 1 - 1 Original Alignment gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg ctgcctactggtaacccttgtacgactgaatgcttccatttcttacataggCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAggtgagtatctttccaaaatatattagctggctcttgtctagggatgatat Alignment from CESAR gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg ctgcctactggtaacccttgtacgactgaatgcttccatttcttacataggCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAggtgagtatctttccaaaatatattagctggctcttgtctagggatgatat Alignment from Spaln_aa2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG ctgcctactggtaacccttgtacgactgaatgcttccatttcttacatagGCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAGgtgagtatctttccaaaatatattagctggctcttgtctagggatgatat Alignment from Spaln_nt2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG ctgcctactggtaacccttgtacgactgaatgcttccatttcttacatagGCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAGgtgagtatctttccaaaatatattagctggctcttgtctagggatgatat Alignment from Pairagon GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG ctgcctactggtaacccttgtacgactgaatgcttccatttcttacatagGCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAGgtgagtatctttccaaaatatattagctggctcttgtctagggatgatat Alignment from Exonerate_protein2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG ctgcctactggtaacccttgtacgactgaatgcttccatttcttacatagGCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAGgtgagtatctttccaaaatatattagctggctcttgtctagggatgatat Alignment from Exonerate_coding2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG ctgcctactggtaacccttgtacgactgaatgcttccatttcttacatagGCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAGgtgagtatctttccaaaatatattagctggctcttgtctagggatgatat Alignment from GeneWise GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG ctgcctactggtaacccttgtacgactgaatgcttccatttcttacatagGCTAAAAGTCAAAGGCCCTCCAAGTGTACCTCGAAGGGACTACGCATTAGgtgagtatctttccaaaatatattagctggctcttgtctagggatgatat #### Bscl2_ID2424_7 --> 1 - 0 Original Alignment gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacaggTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat Alignment from CESAR gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacaggTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat Alignment from Spaln_aa2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacagGTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat Alignment from Spaln_nt2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacagGTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat Alignment from Pairagon GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacagGTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat Alignment from Exonerate_protein2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacagGTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat Alignment from Exonerate_coding2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacagGTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat Alignment from GeneWise GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG tccagtaaccagtaaccatgttcctttcctttcttgcttctcaccaacagGTACCTGCTGTACAACTTCCCCATGACTTGTGCCTTCGTAGGTGTGGCCAGCAACTTCACATTTCTCAGTGTCATCGTGCTTTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAGgtaagtagcgacaaaggccccttttttcttcccttgttgttcaggggcat #### Btaf1_ID7219_3 --> 0 - 1 Original Alignment GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAg aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAggtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag Alignment from CESAR GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAg aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAggtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag Alignment from Spaln_aa2Genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGgtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag Alignment from Spaln_nt2Genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGgtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag Alignment from Pairagon GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGgtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag Alignment from Exonerate_protein2genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGgtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag Alignment from Exonerate_coding2genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGgtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag Alignment from GeneWise GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG aggttttattttgatatgtaattatcctttttgtaaatattttttatcagGTAATAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAACAGGTCAAGCTGTTGAAGCTATAGTGAAAAATGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGgtacagttaaagtgggtaaaacttagctgtacaagcatccttagataaag #### Btaf1_ID7229_12 --> 0 - 0 Original Alignment GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt Alignment from CESAR GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt Alignment from Spaln_aa2Genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt Alignment from Spaln_nt2Genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt Alignment from Pairagon GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt Alignment from Exonerate_protein2genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt Alignment from Exonerate_coding2genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt Alignment from GeneWise GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtaccatgggaaattagcatcccccgactcttcttatctcagGATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAAGACCTTGATGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtaggcaaaagtcttccagcatgctcttcctatagagtatgtttacattt #### Btaf1_ID7232_14 --> 1 - 0 Original Alignment tATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagtATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc Alignment from CESAR tATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagtATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc Alignment from Spaln_aa2Genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc Alignment from Spaln_nt2Genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc Alignment from Pairagon TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc Alignment from Exonerate_protein2genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc Alignment from Exonerate_coding2genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc Alignment from GeneWise TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG atggatttcaagagggaatgaataagattaaacaatgtctcctccttcagTATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAACACAGGACGAGgtgggtaattgacaaatattacctcaaagcttttgtaaattttatagggc #### Btaf1_ID7234_16 --> 0 - 0 Original Alignment GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat Alignment from CESAR GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat Alignment from Spaln_aa2Genome GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat Alignment from Spaln_nt2Genome GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat Alignment from Pairagon GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat Alignment from Exonerate_protein2genome GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat Alignment from Exonerate_coding2genome GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat Alignment from GeneWise GTTTGGATGGAGCTTTTGAGCAAGGCGTCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGCCTAATGATGCAGCCTTCTCACTTACCTATTGATTTAAATATGCTGCTGGAAGTAAAAGCTAGAGCCAAG agcacttaatagaaaagtttgtttcatattattatttttgtttcttctagGTTTGGATGGAGCTTTTGAGCAAGGCATCAGTTCAGTATTTGGTAGCAGCTGCATGCCCATGGATGAGTGCTTGGCTTTGTCTAATGATGCAGCCTTCCCACTTACCCATTGATTTAAATATGCTGTTGGAAGTAAAAGCTAGAGCCAAGgtgagtgtagagaaatgtggtatttctgtgtccagctcattattactgat #### Btaf1_ID7235_17 --> 0 - 2 Original Alignment GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTaa tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAGCAACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTaagtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga Alignment from CESAR GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTaa tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAGCAACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTaagtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga Alignment from Spaln_aa2Genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAGCAACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAgtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga Alignment from Spaln_nt2Genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCA tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAgcaaccagagattttgtagttatgagggccaggatgatggcagctaagtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga Alignment from Pairagon GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAGCAACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAgtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga Alignment from Exonerate_protein2genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAGCAACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAgtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga Alignment from Exonerate_coding2genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAGCAACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAgtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga Alignment from GeneWise GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tttttgtttccaattaaattttattggtcacactgaaccttttctgtcagGAAAAAACAGGTGGTAAAGTGCGGCAAGGTCAAATCCAGAACAAAGAAGTGCTCCAGGAGTATATTGCTGGCGCAGACACCATCATGGAAGACCCAGCAACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAAgtgagtttcaccaagtatcaggtatcagtgaatgaaaattctgattcaga #### Btaf1_ID7240_19 --> 0 - 0 Original Alignment GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa Alignment from CESAR GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa Alignment from Spaln_aa2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa Alignment from Spaln_nt2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa Alignment from Pairagon GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa Alignment from Exonerate_protein2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa Alignment from Exonerate_coding2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa Alignment from GeneWise GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tatgtttctatattttccctaaatcttagttttgtctcccctaactctagGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCTGAACATTTGTATTATGATGAAATTGCTGTCCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAATAACAATGTTTTAACAATAGATCAAGCAAACGACCTGgtaagtaaagagtgaagaagtaactttcttaattctagagcatgaactaa #### Btaf1_ID7246_25 --> 2 - 0 Original Alignment gtGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttaggtGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca Alignment from CESAR gtGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttaggtGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca Alignment from Spaln_aa2Genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttagGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca Alignment from Spaln_nt2Genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttagGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca Alignment from Pairagon GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttagGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca Alignment from Exonerate_protein2genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttagGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca Alignment from Exonerate_coding2genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttagGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca Alignment from GeneWise GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG aagaggtgtaccaaggaactattttaaagtgttttttcttttgtgcttagGTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCAGTATTGGGTAGAATGAGTGATCAGACAGACAGTGTGAGATTTATGGCTACTCAGTGCTTTGCAACACTGATTAGACTCATGCCACTTGAGgtaaacgggagagatcggcctttgtgagtttcgcgttttgtataacctca #### Btaf1_ID7250_29 --> 1 - 2 Original Alignment gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcaggTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTaggtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt Alignment from CESAR gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcaggTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTaggtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt Alignment from Spaln_aa2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcagGTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAGgtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt Alignment from Spaln_nt2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcagGTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAGgtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt Alignment from Pairagon GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcagGTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAGgtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt Alignment from Exonerate_protein2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcagGTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAGgtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt Alignment from Exonerate_coding2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcagGTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAGgtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt Alignment from GeneWise GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaagcaaaataaaatcacattaagaaatgacctgctctgttttggctcagGTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTGGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAGgtgtgtcttgaaatgtactttagaaaaatttagtattgataggtggtatt #### Btaf1_ID7255_34 --> 0 - 0 Original Alignment GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa Alignment from CESAR GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa Alignment from Spaln_aa2Genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa Alignment from Spaln_nt2Genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa Alignment from Pairagon GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa Alignment from Exonerate_protein2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa Alignment from Exonerate_coding2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa Alignment from GeneWise GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacttgagctatgaaagcacacttatagtttgtgttttatccttgctagGCGTTACAGTATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACACCTCAGCATCCAGAATTCAAGAGTACTACTGAAAAACTGACTGTTCAGAATTCTTATCTTCATGATATTCAACATGCGCCTAAGCTCTCAGCCTTGAAACAGgtaaaggtatctttaaatgataaaatagtttaattgatcaattaattaaa #### Btrc_ID9403_2 --> 0 - 0 Original Alignment TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc Alignment from CESAR TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc Alignment from Spaln_aa2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc Alignment from Spaln_nt2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc Alignment from Pairagon TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc Alignment from Exonerate_protein2genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc Alignment from Exonerate_coding2genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc Alignment from GeneWise TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccatcctttctcatactgccccagctacatggctgtttccctccacagTGCTCTATGCCCAGATCTCTGTGGCTGGGTTGCTCTAGCCTGGCGGACAGCATGCCTTCACTGCGATGCCTGTATAACCCAGGGACTGGTGCACTCACAGCTTTCCAGgtaagttctctgtctctgtggattatgggtgggggttggtataattcatc #### Btrc_ID9425_4 --> 0 - 0 Original Alignment ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAGgtaagaatccatgctcagcagttaatagagcacactgccccagggctggg Alignment from CESAR ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAGgtaagaatccatgctcagcagttaatagagcacactgccccagggctggg Alignment from Spaln_aa2Genome aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagacttacaacagctgtgccaggctttgcataaaccaagagacagtatgtctaacaagcactgctatgaagactgaaaattgtgtggccaaggtaagaatccatgctcagcagttaatagagcacactgccccagggctggg Alignment from Spaln_nt2Genome aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagacttacaacagctgtgccaggctttgcataaaccaagagacagtatgtctaacaagcactgctatgaagactgaaaattgtgtggccaaggtaagaatccatgctcagcagttaatagagcacactgccccagggctggg Alignment from Pairagon ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAGgtaagaatccatgctcagcagttaatagagcacactgccccagggctggg Alignment from Exonerate_protein2genome ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAGgtaagaatccatgctcagcagttaatagagcacactgccccagggctggg Alignment from Exonerate_coding2genome ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAGgtaagaatccatgctcagcagttaatagagcacactgccccagggctggg Alignment from GeneWise ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaaaaaaaaaaaaaatggttttttctttcgttgttcttcgaatggtttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAGgtaagaatccatgctcagcagttaatagagcacactgccccagggctggg #### Btrc_ID9457_7 --> 1 - 0 Original Alignment gGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccaggGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc Alignment from CESAR gGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccaggGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc Alignment from Spaln_aa2Genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc Alignment from Spaln_nt2Genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc Alignment from Pairagon GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc Alignment from Exonerate_protein2genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc Alignment from Exonerate_coding2genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc Alignment from GeneWise GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG gcttccaagtggattcatgacctcctcatgttttgttttgtttatcccagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtaagtatcaatggttccagacatttgccaagtggtagggaatcatgagc #### Btrc_ID9463_12 --> 1 - 2 Original Alignment gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg cagagtgggaatctgagacagttcacttgtgacccactccccttcctcaggCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATgggttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag Alignment from CESAR gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg cagagtgggaatctgagacagttcacttgtgacccactccccttcctcaggCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATgggttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag Alignment from Spaln_aa2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cagagtgggaatctgagacagttcacttgtgacccactccccttcctcagGCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATGGgttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag Alignment from Spaln_nt2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cagagtgggaatctgagacagttcacttgtgacccactccccttcctcagGCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATGGgttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag Alignment from Pairagon GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cagagtgggaatctgagacagttcacttgtgacccactccccttcctcagGCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATGGgttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag Alignment from Exonerate_protein2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cagagtgggaatctgagacagttcacttgtgacccactccccttcctcagGCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATGGgttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag Alignment from Exonerate_coding2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cagagtgggaatctgagacagttcacttgtgacccactccccttcctcagGCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATGGgttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag Alignment from GeneWise GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cagagtgggaatctgagacagttcacttgtgacccactccccttcctcagGCTGTGGGACATAGAGTGTGGAGCGTGCCTGCAAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAACCTATGATGGgttggtttgctaacaatgttctgaagcacatctaagagctctggttgtag #### C030046E11Rik_ID6290_4 --> 1 - 2 Original Alignment aGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGag cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagaGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGaggtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt Alignment from CESAR aGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGag cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagaGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGaggtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt Alignment from Spaln_aa2Genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagAGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAGgtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt Alignment from Spaln_nt2Genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagAGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAGgtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt Alignment from Pairagon AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagAGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAGgtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt Alignment from Exonerate_protein2genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagAGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAGgtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt Alignment from Exonerate_coding2genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagAGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAGgtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt Alignment from GeneWise AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG cagcttgggggaaaaataaatatctttattaacggtgaatcctatttcagAGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAGgtaccgtatgctggtaaagttcgagattttctaaccagaaaagaccatgt #### C030046E11Rik_ID6293_7 --> 0 - 2 Original Alignment CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAag gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAaggtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta Alignment from CESAR CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAag gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAaggtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta Alignment from Spaln_aa2Genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAAGgtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta Alignment from Spaln_nt2Genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAAGgtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta Alignment from Pairagon CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAAGgtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta Alignment from Exonerate_protein2genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAAGgtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta Alignment from Exonerate_coding2genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAAGgtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta Alignment from GeneWise CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG gtaaatttagggaaacatttttttagcttcatctgcccttttcaaactagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGTTGCGCAAGgtaagagataactcagttaaagtaaggtgtcttaacatacttgggaccta #### C030046E11Rik_ID6298_12 --> 0 - 0 Original Alignment AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat Alignment from CESAR AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat Alignment from Spaln_aa2Genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat Alignment from Spaln_nt2Genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat Alignment from Pairagon AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat Alignment from Exonerate_protein2genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat Alignment from Exonerate_coding2genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat Alignment from GeneWise AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG agctaagtaccttcatctgttttctctaatggggctgcctttgctctcagAGTAACCAAGAGCAGGTGTTGCTCCAAGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCTCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGTGCTTTACTTGGTCATCGACATTGGCATGTTGTGCAGgtgagtgttcatttactgactgctgctgactcccttcatggaaatgggat #### C030046E11Rik_ID6302_16 --> 0 - 2 Original Alignment CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgg gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgggtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc Alignment from CESAR CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgg gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgggtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc Alignment from Spaln_aa2Genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGgtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc Alignment from Spaln_nt2Genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGgtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc Alignment from Pairagon CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGgtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc Alignment from Exonerate_protein2genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGgtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc Alignment from Exonerate_coding2genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGgtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc Alignment from GeneWise CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG gcctaagcatgcttcctctgatttacatatatgtatttttttctttttagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTTACCAAAGCACCGATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTCTTTCGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGGgtgagctataacggggggtgagtctctgttgctcctctgtatcagcttcc #### C030046E11Rik_ID6309_23 --> 2 - 1 Original Alignment tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg ggtgagagcatcttgtatatgcctttttagattttattttttctctctagtgGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAggtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt Alignment from CESAR tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg ggtgagagcatcttgtatatgcctttttagattttattttttctctctagtgGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAggtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt Alignment from Spaln_aa2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG ggtgagagcatcttgtatatgcctttttagattttattttttctctctagTGGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt Alignment from Spaln_nt2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG ggtgagagcatcttgtatatgcctttttagattttattttttctctctagTGGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt Alignment from Pairagon TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG ggtgagagcatcttgtatatgcctttttagattttattttttctctctagTGGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt Alignment from Exonerate_protein2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG ggtgagagcatcttgtatatgcctttttagattttattttttctctctagTGGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt Alignment from Exonerate_coding2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG ggtgagagcatcttgtatatgcctttttagattttattttttctctctagTGGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt Alignment from GeneWise TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG ggtgagagcatcttgtatatgcctttttagattttattttttctctctagTGGGTGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCGTCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtaagcagctagcagtggaacaagttgtagctcttcttgagttttgcttt #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTGGGCCCTGAGGAGTTGGAGg gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGggtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from CESAR GATCGTGAACTGGGCCCTGAGGAGTTGGAGg gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGggtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Spaln_aa2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Spaln_nt2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Pairagon GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Exonerate_protein2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Exonerate_coding2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from GeneWise GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct #### Capn1_ID1363_13 --> 1 - 0 Original Alignment gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcaggGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from CESAR gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcaggGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Spaln_aa2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Spaln_nt2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Pairagon GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Exonerate_protein2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Exonerate_coding2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from GeneWise GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag #### Capn1_ID1370_6 --> 0 - 0 Original Alignment ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga Alignment from CESAR ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga Alignment from Spaln_aa2Genome ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga Alignment from Spaln_nt2Genome ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga Alignment from Pairagon ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga Alignment from Exonerate_protein2genome ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga Alignment from Exonerate_coding2genome ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga Alignment from GeneWise ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG gtagggatggcacctcctcttctgaccaactaatatatgttcttttccagATTTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACAGGTGCCAAGCAGgtgaaaactgggatgtgacctgttatgcagtgtggttcttgtttatggga #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGggtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from CESAR GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGggtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Pairagon GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Exonerate_coding2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc #### Carns1_ID384_8 --> 2 - 0 Original Alignment gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttaggtGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg Alignment from CESAR gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttaggtGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg Alignment from Spaln_aa2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttagGTGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg Alignment from Spaln_nt2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttagGTGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg Alignment from Pairagon GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttagGTGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg Alignment from Exonerate_protein2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttagGTGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg Alignment from Exonerate_coding2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttagGTGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg Alignment from GeneWise GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ggaggccggggttgtgggaagctcattccggtgtttttcttcctctttagGTGTGGACTTAGTTCTCACGGTGATCGGACGCACACTGACGCCTGTGGTCCTTAAGCTGAACAGTGGTCTGTGCCTAGAGGCCTGTGGCGCACTTGAAGGGCTGTGGGCTGTGCCACGCCTACGACGATCAGCTGAGGAGGCAGCTGCAGCGCCACTGGTTGAGACTATGCTGCGGCGTTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATCGGCACCGACAGTGTCAGCAAGAAGTTCTTGTGGGAGGTGGCGCGGGACTACAGACTCACAgtaaaagggacacgacacagatcatgttctgattgatgggtgcaggctgg #### Casp7_ID12087_2 --> 1 - 1 Original Alignment gAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAg ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcaggAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAggtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca Alignment from CESAR gAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAg ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcaggAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAggtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca Alignment from Spaln_aa2Genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcagGAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAGgtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca Alignment from Spaln_nt2Genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcagGAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAGgtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca Alignment from Pairagon GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcagGAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAGgtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca Alignment from Exonerate_protein2genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcagGAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAGgtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca Alignment from Exonerate_coding2genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcagGAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAGgtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca Alignment from GeneWise GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggtcttaccctgactgtttccaaagactattaacttgcctttccttgcagGAAGAAGAAGAGAAATGCCTGTGCGGGCCCTGTCAGGACCAGCCGGGACCGAGTGCCCACGTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAGgtaactgaggggcaaggccagttcctcctgaccctcctacatcctccaca #### Catsper1_ID930_7 --> 2 - 2 Original Alignment gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa cccgctggaaagggtggcaccttggacacctggcctttctccttgtttaggtGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCaagtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from CESAR gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa cccgctggaaagggtggcaccttggacacctggcctttctccttgtttaggtGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCaagtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Spaln_aa2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Spaln_nt2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Pairagon GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Exonerate_protein2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from Exonerate_coding2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg Alignment from GeneWise GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cccgctggaaagggtggcaccttggacacctggcctttctccttgtttagGTGCCTGGTACATCATACCAATCCTCATGATTTACATTGTCATCCAATACTTCATCTTCCTCAAgtacaccaccaacccgcttcattacccaaccactaggtctttacctaacg #### Catsper1_ID933_10 --> 2 - 2 Original Alignment acGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGaa gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagatGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGaagtaattagaagaaagggagtggctagggctagggctggggaggcaggaat Alignment from CESAR acGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGaa gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagatGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGaagtaattagaagaaagggagtggctagggctagggctggggaggcaggaat Alignment from Spaln_aa2Genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagATGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtaattagaagaaagggagtggctagggctagggctggggaggcaggaat Alignment from Spaln_nt2Genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagATGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtaattagaagaaagggagtggctagggctagggctggggaggcaggaat Alignment from Pairagon ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagATGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtaattagaagaaagggagtggctagggctagggctggggaggcaggaat Alignment from Exonerate_protein2genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagATGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtaattagaagaaagggagtggctagggctagggctggggaggcaggaat Alignment from Exonerate_coding2genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagATGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtaattagaagaaagggagtggctagggctagggctggggaggcaggaat Alignment from GeneWise ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA gcattcatttgccaggtcacctcatcacctctttgacctgatttaattagATGCCAATGCACGAATGACTGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtaattagaagaaagggagtggctagggctagggctggggaggcaggaat #### Cbwd1_ID5355_12 --> 0 - 0 Original Alignment AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg Alignment from CESAR AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg Alignment from Spaln_aa2Genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg Alignment from Spaln_nt2Genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg Alignment from Pairagon AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg Alignment from Exonerate_protein2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg Alignment from Exonerate_coding2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg Alignment from GeneWise AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aataggtggatgattgtataacaattctctcacattttttccttttacagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtgagcgcaattttcaactaattaatgattcctcggctgctttgtgtatg #### Cbwd1_ID5359_9 --> 1 - 2 Original Alignment aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagaTCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAaggtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc Alignment from CESAR aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagaTCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAaggtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc Alignment from Spaln_aa2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagATCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAAGgtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc Alignment from Spaln_nt2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagATCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAAGgtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc Alignment from Pairagon ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagATCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAAGgtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc Alignment from Exonerate_protein2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagATCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAAGgtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc Alignment from Exonerate_coding2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagATCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAAGgtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc Alignment from GeneWise ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttaagaaaaccacaccttttaaacctcaactcctctgtggaatttctagATCAATAAATGGACTGGGAAAAGTTCTAGAAACTCAGAGATCAAGgtactgtttctttgacatcctaagagcacctctggtcggctgactcatgc #### Ccdc147_ID10422_12 --> 0 - 0 Original Alignment GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc Alignment from CESAR GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc Alignment from Spaln_aa2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc Alignment from Spaln_nt2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc Alignment from Pairagon GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc Alignment from Exonerate_protein2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc Alignment from Exonerate_coding2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc Alignment from GeneWise GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttaggctactcatcaatgtaatgtggtgatagctgtttttctcacagGCTGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgctccttgtgacccccaccccccagcaaccatgaatcctttgcc #### Ccdc147_ID10425_14 --> 1 - 0 Original Alignment gCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttaggCAG---CTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc Alignment from CESAR gCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttaggCAG---CTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc Alignment from Spaln_aa2Genome GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttagGCAG---CTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc Alignment from Spaln_nt2Genome GGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttagGCAGCTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc Alignment from Pairagon GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttagGC---AGCTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc Alignment from Exonerate_protein2genome GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttagGCAG---CTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc Alignment from Exonerate_coding2genome GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttagGCAG---CTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc Alignment from GeneWise GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG atagcacattcagaagaagttctttgcacatattttgcctgatattttagGCAG---CTCTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAGgtgagtcctgttagcccatccctcctgctccccagccctcttctccagcc #### Ccdc147_ID10428_15 --> 0 - 0 Original Alignment GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga Alignment from CESAR GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga Alignment from Spaln_aa2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga Alignment from Spaln_nt2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga Alignment from Pairagon GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga Alignment from Exonerate_protein2genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga Alignment from Exonerate_coding2genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga Alignment from GeneWise GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG ccacagtgctttgaaactgatgctatctattgggggcttcctcttggcagGCCAGTGACCCTAGCACCTTCGAGCTTATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACAGAAGAGGTGGTGGAAAAAGAGCTGCTTCTCCAGgtagaggtctatgggcctgggctcccggggtcgcatcgtggtctctagga #### Ccdc147_ID10443_17 --> 0 - 2 Original Alignment GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGaa tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAaagtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt Alignment from CESAR GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGaa tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAaagtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt Alignment from Spaln_aa2Genome GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGAA tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAAAgtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt Alignment from Spaln_nt2Genome GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGAA tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAAAgtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt Alignment from Pairagon GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGAA tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAAAgtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt Alignment from Exonerate_protein2genome GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGAA tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAAAgtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt Alignment from Exonerate_coding2genome GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGAA tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAAAgtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt Alignment from GeneWise GTTCTGTCATCGGAGTTGAATATGTACGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTGATGTCTTTAAAGAAGAAATACCTGGCTCAGAAACGCAAAGAACTCGTTCTGAA tttctattccctgtgcatcctgaactaacttacccagccttgtgtttcagGTTTTATCATCGGAGTTGAATATGTATGAGTCACAGAGCCAGGAGTACAAGTATGAGATCGAGAGACTTGGCAATGAACTAATGTCTTTAAAGAGGAAATACCTGGCTCAGAAACGTAAAGAACTCGTTCTAAAgtaaacctcagtccaatgttttaatctcataatgcttggtatctgattgt #### Ccdc172_ID12718_2 --> 2 - 0 Original Alignment taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc Alignment from CESAR taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc Alignment from Spaln_aa2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc Alignment from Spaln_nt2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc Alignment from Pairagon TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc Alignment from Exonerate_protein2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc Alignment from Exonerate_coding2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc Alignment from GeneWise TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG atggagtcttgagaaaggtgaatgcaagattaaatgcttgttgtgtacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAGgtcaggatgcatagaacatgataagtgttacttgaagacgtatgttgagc #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttaggGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCaagtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from CESAR gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttaggGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCaagtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Spaln_aa2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Spaln_nt2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Pairagon GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Exonerate_protein2genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from Exonerate_coding2genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc Alignment from GeneWise GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA ttcccaggctttgggatttttgtgaatttacattgtgctttcttttttagGGACCAGCTTAATGCCTTGCGCCAGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACCAAgtgagtccctaccttccagaaccaggatcctgttaacctttgccctgtcc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCTGCATCGCGAGCAGCGAGAGTATctgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCTGCATCGCGAGCAGCGAGAGTATctgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCTGCATCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCTGCATCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGA---GCGACCCTCTGCATCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCTGCATCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from Exonerate_coding2genome GTGAGCTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccag-----CTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCTGCATCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT atggacagtccagagccgggtattcatcactcccgattgttttactccagCTTCTGACCCAGCTTCGCAGTGTGCAGGAGGAGGAGAACAGGCAGCTGTTAGCAGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGTAGCCTGGAGAGC---GACCCTCTGCATCGCGAGCAGCGAGAGTATCTgttagtatgctcagggtcaggttcctcagggagccccaagttctccccac #### Ccdc88b_ID1830_19 --> 0 - 2 Original Alignment GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcggtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct Alignment from CESAR GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcggtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct Alignment from Spaln_aa2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGgtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct Alignment from Spaln_nt2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGgtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct Alignment from Pairagon GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGgtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct Alignment from Exonerate_protein2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGgtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct Alignment from Exonerate_coding2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGgtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct Alignment from GeneWise GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG tgtaggctggctgcctctctgcagcagtttcttctttctccccttcccagGCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAAGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGGGACCATGAGGCCTTAGTGCAGCTGCAACGACGGCAGGAGACGGAGCTGGAAGGACTGTTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGgtaatcctccccaaatgcacgacttctctcctcagcacgcttacctgcct #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGggtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGggtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaaggGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaaggGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from Exonerate_coding2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTC---AGTTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG gggtgtggttctgcagttggcagacatctaattcattgtctaatttaaagGGAAGAGAAGGCTGAGCAACTGCTAGACTCCCAGGCAGAGGTTCAG---TTGGAGGCTGAAATTCGAAGACTGCGCCAGGAGgtaaggtctaacttcttccccccaacacaccctcctccacctgctctaaa #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT atgtaaagggggtttgtaacatgcttcttctacccttaatgtgattctagCGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaatagtctgaaggctcattaaggggtcagtgagatctcgacaggtcct #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagtGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagtGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat #### Ccnj_ID8042_3 --> 2 - 1 Original Alignment gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg aagacctccacataccactttgctggcactattttttgctttgcctgtaggcAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtaactggctgtgcccttgggtgacggtgcatggtgacctaagtgttttg Alignment from CESAR gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg aagacctccacataccactttgctggcactattttttgctttgcctgtaggcAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtaactggctgtgcccttgggtgacggtgcatggtgacctaagtgttttg Alignment from Spaln_aa2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aagacctccacataccactttgctggcactattttttgctttgcctgtagGCAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaactggctgtgcccttgggtgacggtgcatggtgacctaagtgttttg Alignment from Spaln_nt2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aagacctccacataccactttgctggcactattttttgctttgcctgtagGCAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaactggctgtgcccttgggtgacggtgcatggtgacctaagtgttttg Alignment from Pairagon GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aagacctccacataccactttgctggcactattttttgctttgcctgtagGCAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaactggctgtgcccttgggtgacggtgcatggtgacctaagtgttttg Alignment from Exonerate_protein2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aagacctccacataccactttgctggcactattttttgctttgcctgtagGCAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaactggctgtgcccttgggtgacggtgcatggtgacctaagtgttttg Alignment from Exonerate_coding2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aagacctccacataccactttgctggcactattttttgctttgcctgtagGCAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaactggctgtgcccttgggtgacggtgcatggtgacctaagtgttttg Alignment from GeneWise GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAA--------------------------------------------------- aagacctccacataccactttgctggcactattttttgctttgcctgtagGCAAATTTGAAGAGAAGGAAGACAGTGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTTGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCTGTGCACGAGACAGACCTTCACGATGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGGTAACTGGCTGTGCCCTTGGGTGACGGTGCATGGTGACCTAAGTGTTTTG #### Ccs_ID663_5 --> 1 - 0 Original Alignment cTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagcTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac Alignment from CESAR cTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagcTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac Alignment from Spaln_aa2Genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagCTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac Alignment from Spaln_nt2Genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagCTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac Alignment from Pairagon CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagCTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac Alignment from Exonerate_protein2genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagCTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac Alignment from Exonerate_coding2genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagCTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac Alignment from GeneWise CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG gagtctgcacatgattatttggatacctttgtttttcgctgtctctacagCTGCGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATTGGgtaagggtaggtctgggctggggttggggcatagagagagaaaccaggac #### Cd5_ID2994_4 --> 2 - 1 Original Alignment agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagagCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAggtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from CESAR agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagagCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAggtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Spaln_aa2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Spaln_nt2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Pairagon AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Exonerate_protein2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Exonerate_coding2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from GeneWise AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta #### Cd5_ID2995_3 --> 2 - 1 Original Alignment atATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAg accccgccctccatcacctgatgcctcgtttttttttttttaattaatagatATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAggtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg Alignment from CESAR atATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAg accccgccctccatcacctgatgcctcgtttttttttttttaattaatagatATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAggtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg Alignment from Spaln_aa2Genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG accccgccctccatcacctgatgcctcgtttttttttttttaattaatagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg Alignment from Spaln_nt2Genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG accccgccctccatcacctgatgcctcgtttttttttttttaattaatagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg Alignment from Pairagon ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG accccgccctccatcacctgatgcctcgtttttttttttttaattaatagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg Alignment from Exonerate_protein2genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG accccgccctccatcacctgatgcctcgtttttttttttttaattaatagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg Alignment from Exonerate_coding2genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG accccgccctccatcacctgatgcctcgtttttttttttttaattaatagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg Alignment from GeneWise ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG accccgccctccatcacctgatgcctcgtttttttttttttaattaatagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtaggtgatagagtgtgacacactgggcagagacttgggagggtaagtgg #### Cd6_ID3014_10 --> 2 - 1 Original Alignment atTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAg tggtacagcagacagacatatatccctcgatccccctccacgctttgcagatTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAggtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct Alignment from CESAR atTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAg tggtacagcagacagacatatatccctcgatccccctccacgctttgcagatTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAggtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct Alignment from Spaln_aa2Genome ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG tggtacagcagacagacatatatccctcgatccccctccacgctttgcagATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAGgtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct Alignment from Spaln_nt2Genome ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG tggtacagcagacagacatatatccctcgatccccctccacgctttgcagATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAGgtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct Alignment from Pairagon ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG tggtacagcagacagacatatatccctcgatccccctccacgctttgcagATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAGgtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct Alignment from Exonerate_protein2genome ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG tggtacagcagacagacatatatccctcgatccccctccacgctttgcagATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAGgtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct Alignment from Exonerate_coding2genome ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG tggtacagcagacagacatatatccctcgatccccctccacgctttgcagATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAGgtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct Alignment from GeneWise ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG tggtacagcagacagacatatatccctcgatccccctccacgctttgcagATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAGgtatgactaaagcaggcaggtcttggagagcagaggcagggtgctgacct #### Cd6_ID3015_9 --> 2 - 1 Original Alignment ctCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACa acccagcttggggctgtaccctggcccggttaataccatctctcctacagctCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACagtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa Alignment from CESAR ctCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACa acccagcttggggctgtaccctggcccggttaataccatctctcctacagctCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACagtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa Alignment from Spaln_aa2Genome CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA acccagcttggggctgtaccctggcccggttaataccatctctcctacagCTCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACAgtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa Alignment from Spaln_nt2Genome CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA acccagcttggggctgtaccctggcccggttaataccatctctcctacagCTCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACAgtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa Alignment from Pairagon CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA acccagcttggggctgtaccctggcccggttaataccatctctcctacagCTCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACAgtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa Alignment from Exonerate_protein2genome CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA acccagcttggggctgtaccctggcccggttaataccatctctcctacagCTCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACAgtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa Alignment from Exonerate_coding2genome CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA acccagcttggggctgtaccctggcccggttaataccatctctcctacagCTCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACAgtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa Alignment from GeneWise CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA acccagcttggggctgtaccctggcccggttaataccatctctcctacagCTCCTATGCTTTTCGTCCAGCCCCGGGTCCCTGCAGATTCGGACTCAAGTTCTGACTCTGACTATGAACACTATGACTTCAGCTACCAGCCACCTGTGGCCCTGACCACCTTCTACAgtgagcgctgggctggcctcagaggtttgggacctacatgtaggagggaa #### Cd6_ID3021_3 --> 2 - 1 Original Alignment agGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAg ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagagGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAggtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt Alignment from CESAR agGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAg ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagagGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAggtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt Alignment from Spaln_aa2Genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagAGGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAGgtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt Alignment from Spaln_nt2Genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagAGGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAGgtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt Alignment from Pairagon AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagAGGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAGgtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt Alignment from Exonerate_protein2genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagAGGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAGgtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt Alignment from Exonerate_coding2genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagAGGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAGgtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt Alignment from GeneWise AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ctgaaggacaaagatctgatgaagtcccggatttttttctctccctttagAGGAGCGGCTGGGGATTCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGCGCAGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGCAGTGCCGGGAATACAACGTGGGCGCGGGCACCAACCGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAGTGTAGCAGTGACAGGCGGCTGGTGTGGGTCACCTGTGCAGgtaggtatgccaggctacatatctgtcctacaacctcaggtttaaacatt #### Cdc37l1_ID6199_6 --> 0 - 0 Original Alignment GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac Alignment from CESAR GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac Alignment from Spaln_aa2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac Alignment from Spaln_nt2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac Alignment from Pairagon GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac Alignment from Exonerate_protein2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac Alignment from Exonerate_coding2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac Alignment from GeneWise GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG ggggcttttcagagtacagtgtggttgaaacattttttttttcttgatagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtaagttgggaacttaaatacagtgacataaccttgttctttgggaccac #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgggtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgggtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg #### Cdc42bpg_ID1594_24 --> 0 - 1 Original Alignment CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACagtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from CESAR CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACagtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Spaln_aa2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Spaln_nt2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Pairagon CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Exonerate_protein2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from Exonerate_coding2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag Alignment from GeneWise CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agggtactggggggtctgggggcatttcaggctctctattgtgcttacagCCTGGCTCACACACCCTGCGACCCCGGAGTTTTCCATCCCCTACAAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTGGGCCGTCAGGGCCTGGGCTGTGACAgtgagtacatttgtccttcaggctctcccatcataccataacatacccag #### Cdc42bpg_ID1598_28 --> 0 - 1 Original Alignment GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTg tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTggtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg Alignment from CESAR GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTg tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTggtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg Alignment from Spaln_aa2Genome GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTG tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTGgtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg Alignment from Spaln_nt2Genome GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTG tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTGgtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg Alignment from Pairagon GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTG tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTGgtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg Alignment from Exonerate_protein2genome GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTG tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTGgtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg Alignment from Exonerate_coding2genome GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTG tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTGgtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg Alignment from GeneWise GTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCAGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCCCGACCGGTGTACACACTCAAGGAGGCCTATGACAATGGGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTG tggctgtcaatgcttgcatacagccctctggtctgcacttcctcttacagGTGACAGCCTCCCAGCTGACAGTGCCACCAACCACATGCACTGTGCTGCTGCTGGCGGAGAATGAGGGGGAGCGGGAGCGCTGGCTTCAGGTGCTGGGGGAGCTGCAGCGGCTGCTACTGGATGCACGTCCAAGGCCGCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGCGCTGCCACTGCTGCCTCATGCGCTCTGTGCTGCTGTCATTGgtgaggtgtgtgttgtagggctgccacttttaaatagcctgaggggaagg #### Cdc42bpg_ID1600_30 --> 2 - 1 Original Alignment acATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGg ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagacATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGggtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc Alignment from CESAR acATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGg ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagacATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGggtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc Alignment from Spaln_aa2Genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGGgtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc Alignment from Spaln_nt2Genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGGgtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc Alignment from Pairagon ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGGgtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc Alignment from Exonerate_protein2genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGGgtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc Alignment from Exonerate_coding2genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGGgtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc Alignment from GeneWise ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctgctgcttacctgcacactacttgctcccttatgtgtttaactgtacagACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCAGTTGGCTGTTAGCTCTGTGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTGTTCGCCCTGGATGAGCTGGAGAGTGCTGAGGTGGCGGGTGCTAAGATCCCAGAATCCCGCGACTGTCAAGCTTTGGTCGCTGGGCGTATCTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAACGCCAAGTTCTCTGTTACCAGTTGGGCCCAGGACCAGGCCCCTGGCAGTGCCGCATCAGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTTGGTGATCGGCTCTGTGTGGGCGCCACAGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCACTGGGAACTGGTCTGGTGGCTGAGGAGCTACCTGCATCCCGTGGGGGCCTAGGTGAGGCCCTGGGTGCTGTGGAGCTCAGCCTCAGTGAGCTCCTGCTGCTCTTCGCCACTGCCGATGTCTATGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGGgtaatactggtagagaggcttggcagggtggcgtcaggccctgggggtcc #### Cdc42bpg_ID1606_36 --> 2 - 0 Original Alignment taGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagtaGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt Alignment from CESAR taGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagtaGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt Alignment from Spaln_aa2Genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt Alignment from Spaln_nt2Genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt Alignment from Pairagon TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt Alignment from Exonerate_protein2genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt Alignment from Exonerate_coding2genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt Alignment from GeneWise TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaccaggtagtttgtccacccaaccccttttctgttgcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTGTCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtgacccaaagggcagggctttccttctaccattcaaggtctaggcactt #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct Alignment from Exonerate_protein2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct Alignment from Exonerate_coding2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct Alignment from GeneWise GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaagttttgctcaccatgaatgtgtttgtgctttcagGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGTAAATCTGGCTCAGACCTCCCAAATTCATTCTCTGAAATCTGGCCAAGGgtagggtcttggtcccccaggtgctggggttgggtttgtgtgctgcgtct #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAggtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggggatcccatcggggtctttgatcaagatagaacacaattgtttttcagGCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGATCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAAAGTGCCATGGAGCGCCTGAAGAGAGgtaagtgaagccacgggcaaactttaacagaacagtgcagtaaggatgga #### Cep55_ID7509_4 --> 0 - 1 Original Alignment GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAg tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAggtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag Alignment from CESAR GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAg tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAggtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag Alignment from Spaln_aa2Genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAGgtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag Alignment from Spaln_nt2Genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAGgtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag Alignment from Pairagon GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAGgtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag Alignment from Exonerate_protein2genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAGgtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag Alignment from Exonerate_coding2genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAGgtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag Alignment from GeneWise GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG tcttagttctgggctttttaatatgctgcaaacttgggtcctcttgccagGCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCTTACGTTAAAGGGCTTTTAGCTAAGATCTTTGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTAACACAGCAGATGAAGAAGATTGAATCAGAAGgtaggtagctatacaagtggtcttttgggacaagtgccatctcccaacag #### Cep78_ID3973_13 --> 0 - 2 Original Alignment CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgggtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca Alignment from CESAR CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgggtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca Alignment from Spaln_aa2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca Alignment from Spaln_nt2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca Alignment from Pairagon CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca Alignment from Exonerate_protein2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca Alignment from Exonerate_coding2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca Alignment from GeneWise CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG tagatgattttgaaggaatcacaccatgatctgtctgatttttcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaggtccagaggggggagattcctcagtggcttcaatcgtagcttacca #### Cep78_ID3974_12 --> 0 - 0 Original Alignment GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga Alignment from CESAR GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga Alignment from Spaln_aa2Genome GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga Alignment from Spaln_nt2Genome GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga Alignment from Pairagon GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga Alignment from Exonerate_protein2genome GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga Alignment from Exonerate_coding2genome GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga Alignment from GeneWise GAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGTGAG ggaccagggtgcagtgtggttgctacattgaatgtcctgcctgctcccagGAGAAGCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTTATCCGCCTCAAGGCTGACAAGCGTCTCAGTGAGgtaccaaggcttgcctcatattctatacctaggactgcaaaatacctgga #### Cfl1_ID1060_2 --> 0 - 2 Original Alignment GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg tacccctgaagccttttcctaacaaggtaccctgacatatcttcccccagGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtggtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag Alignment from CESAR GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg tacccctgaagccttttcctaacaaggtaccctgacatatcttcccccagGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtggtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag Alignment from Spaln_aa2Genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG tacccctgaagccttttcctaacaaggtaccctgacatatcttcccccagGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGgtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag Alignment from Spaln_nt2Genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG tacccctgaagccttttcctaacaaggtaccctgacatatcttcccccagGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGgtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag Alignment from Pairagon GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG tacccctgaagccttttcctaacaaggtaccctgacatatcttcccccagGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGgtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag Alignment from Exonerate_protein2genome ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG tacccctgaagccttttcctaacaaggtaccctgacatatcttccccCAGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGgtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag Alignment from Exonerate_coding2genome GGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG tacccctgaagccttttcctaacaaggtaccctgacatatcttcccccaGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGgtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag Alignment from GeneWise ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG tacccctgaagccttttcctaacaaggtaccctgacatatcttccccCAGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGTGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGACATCCTGGTAGGTGATCTGGGGCAGACTGTGGATGACCCCTACACCACTTTCGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGgtaggtttcgtattcaggctcttcttcctgcctctggttccctttctcag #### Chuk_ID8907_20 --> 1 - 0 Original Alignment aGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagaGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca Alignment from CESAR aGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagaGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca Alignment from Spaln_aa2Genome AGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagAGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca Alignment from Spaln_nt2Genome AGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagAGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca Alignment from Pairagon AGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagAGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca Alignment from Exonerate_protein2genome AGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagAGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca Alignment from Exonerate_coding2genome AGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagAGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca Alignment from GeneWise AGAGACGTTAGCACAAATGATAGAAGAAAATCTGAACTGTCTTGGCCATTTAAGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATG acaggggctcctttgctgagcttgaagtcttttctttgaccacttgttagAGAGACGTTAGCCCAAATGATAGAAGAAAATTTGAACTGTCTTGGCCATTTAGGTACTATTATTCGTGAAGCAAATGAGGACCAGAGCAGTAGTTTGATGgtaaagcttgtgttgagcaacttctgttactgtgatgaattagccttaca #### Chuk_ID8911_17 --> 2 - 2 Original Alignment atCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGag tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagatCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGaggtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct Alignment from CESAR atCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGag tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagatCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGaggtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct Alignment from Spaln_aa2Genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagATCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct Alignment from Spaln_nt2Genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagATCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct Alignment from Pairagon ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagATCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct Alignment from Exonerate_protein2genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagATCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct Alignment from Exonerate_coding2genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagATCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct Alignment from GeneWise ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttatatagactgtttttctttggtccccacagATCACTTATACAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtgagtaaattgctttattcccttctaaatgtcattatatttgtgttcct #### Chuk_ID8919_9 --> 1 - 0 Original Alignment tTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagtTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag Alignment from CESAR tTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagtTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag Alignment from Spaln_aa2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagTTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag Alignment from Spaln_nt2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagTTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag Alignment from Pairagon TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagTTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag Alignment from Exonerate_protein2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagTTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag Alignment from Exonerate_coding2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagTTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag Alignment from GeneWise TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG agcaattcacatgtttggtattgttttgtgaggcaattgttctgtttcagTTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGTGGACCTATAGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGAACACATTCTCAATTTAAAGgtaaagtttaatgggctgcattttagaatacctacattgactttaacaag #### Cnnm2_ID10021_2 --> 2 - 1 Original Alignment ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagggAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACagtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga Alignment from CESAR ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagggAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACagtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga Alignment from Spaln_aa2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga Alignment from Spaln_nt2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga Alignment from Pairagon GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga Alignment from Exonerate_protein2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga Alignment from Exonerate_coding2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga Alignment from GeneWise GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA ctaaataattcagaaaatgaccttttcatttctgtctccctgtgattcagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGGATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaagcacctctgtctctgtgcccttgttgccactgccccggcgcattga #### Cnnm2_ID10026_4 --> 2 - 0 Original Alignment aaGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagaaGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct Alignment from CESAR aaGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagaaGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct Alignment from Spaln_aa2Genome AAGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagAAGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct Alignment from Spaln_nt2Genome AAGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagAAGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct Alignment from Pairagon AAGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagAAGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct Alignment from Exonerate_protein2genome AAGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagAAGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct Alignment from Exonerate_coding2genome AAGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagAAGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct Alignment from GeneWise AAGTAGAAGCGTTTAGCCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCCGTAGACTACTTCGTCCTCATTCTTCAG agcctttgccctccttgaagtgtaatgtcacacactgctttctctttcagAAGTAGAAGCGTTTAGTCCATCCCAGATGTCAGAGAAGATCCTCCTAAGGCTGCTAAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTGCTACCTCTACCAGCGGAACAAGCCTGTAGACTACTTCGTCCTCATTCTTCAGgtaagtactcactctttgctgctagcccttgctgggcatcctgctctgct #### Cnnm2_ID10027_5 --> 0 - 1 Original Alignment GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAggtatgtagccctggcacctatttcaggaagacccagccctcctccctcag Alignment from CESAR GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAggtatgtagccctggcacctatttcaggaagacccagccctcctccctcag Alignment from Spaln_aa2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAGgtatgtagccctggcacctatttcaggaagacccagccctcctccctcag Alignment from Spaln_nt2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAGgtatgtagccctggcacctatttcaggaagacccagccctcctccctcag Alignment from Pairagon GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAGgtatgtagccctggcacctatttcaggaagacccagccctcctccctcag Alignment from Exonerate_protein2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAGgtatgtagccctggcacctatttcaggaagacccagccctcctccctcag Alignment from Exonerate_coding2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAGgtatgtagccctggcacctatttcaggaagacccagccctcctccctcag Alignment from GeneWise GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG actagccttctatgttgttaaagctgaagcatctttccttctttctgcagGGGAAGGTGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTAATGGCCCTCACAGCATCTCCAGgtatgtagccctggcacctatttcaggaagacccagccctcctccctcag #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctccctaatcccacttgagtctacaaccttatttttcccaatcccttaggtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAggtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctccctaatcccacttgagtctacaaccttatttttcccaatcccttaggtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAggtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctccctaatcccacttgagtctacaaccttatttttcccaatcccttagGTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAGgtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctccctaatcccacttgagtctacaaccttatttttcccaatcccttagGTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAGgtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctccctaatcccacttgagtctacaaccttatttttcccaatcccttagGTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAGgtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctccctaatcccacttgagtctacaaccttatttttcccaatcccttagGTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAGgtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa Alignment from Exonerate_coding2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctccctaatcccacttgagtctacaaccttatttttcccaatcccttagGTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAGgtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctccctaatcccacttgagtctacaaccttatttttcccaatcccttagGTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCCGGACCCCCTGGACTGCCAGGAACATCCTACGAGGAGTTACTGACCATGCTCCGAGgtaagtcgcaagcagaaacgtccatcaaatggttcaggatggaaactgaa #### Col17a1_ID10287_35 --> 2 - 1 Original Alignment gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg cagctttgggggaggggccgtgattgagaccacattcatgtttactttaggcCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAggtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg Alignment from CESAR gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg cagctttgggggaggggccgtgattgagaccacattcatgtttactttaggcCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAggtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg Alignment from Spaln_aa2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG cagctttgggggaggggccgtgattgagaccacattcatgtttactttagGCCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAGgtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg Alignment from Spaln_nt2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG cagctttgggggaggggccgtgattgagaccacattcatgtttactttagGCCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAGgtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg Alignment from Pairagon GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG cagctttgggggaggggccgtgattgagaccacattcatgtttactttagGCCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAGgtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg Alignment from Exonerate_protein2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG cagctttgggggaggggccgtgattgagaccacattcatgtttactttagGCCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAGgtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg Alignment from Exonerate_coding2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG cagctttgggggaggggccgtgattgagaccacattcatgtttactttagGCCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAGgtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg Alignment from GeneWise GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG cagctttgggggaggggccgtgattgagaccacattcatgtttactttagGCCCAGCTGGCCCTGCTGGTCTCCCAGGTCAACAAGgtgagtatcaccctgtataatcacagtctgtgggctggtggaggctgagg #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcaggtGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAggtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcaggtGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAggtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG ctatgtgctgcctagctccgatgatgggttttttctccccatgttctcagGTGCCGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTACCTGGTGTCAAAGgtaacataggggaggagtaggaattagaaagcattctgtggaggcgtctc #### Col17a1_ID10313_9 --> 2 - 1 Original Alignment tgTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAg aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagtgTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTggtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg Alignment from CESAR tgTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAg aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagtgTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTggtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg Alignment from Spaln_aa2Genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagTGTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTGgtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg Alignment from Spaln_nt2Genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagTGTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTGgtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg Alignment from Pairagon TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagTGTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTGgtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg Alignment from Exonerate_protein2genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagTGTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTGgtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg Alignment from Exonerate_coding2genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagTGTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTGgtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg Alignment from GeneWise TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG aaagagttcaagtctgccctggtgacaatgtttgctctgtcctctcccagTGTCTGGATCTTATGATTCAGCAATACTGGACACAAATTTTCCACCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACGTATCAGAACAACATAACAGCCCAGAGCACATCTCTCCTCAACACCAATGCCTACTCAACGGGATCTGgtaagagtgactgtacacagcatgtcactacttggtaaggacagccaagg #### Col17a1_ID10314_8 --> 2 - 1 Original Alignment ggACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAg ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagggACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAggtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca Alignment from CESAR ggACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAg ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagggACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAggtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca Alignment from Spaln_aa2Genome GGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAG ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagGGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAGgtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca Alignment from Spaln_nt2Genome GGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAG ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagGGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAGgtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca Alignment from Pairagon GGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAG ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagGGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAGgtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca Alignment from Exonerate_protein2genome GGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAG ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagGGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAGgtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca Alignment from Exonerate_coding2genome GGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAG ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagGGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAGgtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca Alignment from GeneWise GGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGTCCCACCAGGAACACCTCCAACACACTCCCCATCCCCAAGAAAGGCACCGTAGAGACCAAAACAGTGACAGCGAGCTCCCACTCAG ggaaagggtcccttccagggcctgatggtgtcttttgaaatattttacagGGACAGAACTGGATGAGGTGAAGCGTTTGCTTAAGGGGAGCCGCTCTGCAAGTGCAAGCCCCACCAGGAACACCTCGAACACACTTCCCATCCCCAAAAAAGGCACTGTAGAGACGAAGACAGTGACAGCAAGCTCCCACTCAGgtcctgttggcatgtccggtcagccatgtggtcatgggaacaatgtggca #### Col17a1_ID10317_5 --> 2 - 1 Original Alignment ggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCg atggataggataagtagccatatgtcctatttttctttttgtgttttcagggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCagtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat Alignment from CESAR ggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCg atggataggataagtagccatatgtcctatttttctttttgtgttttcagggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCagtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat Alignment from Spaln_aa2Genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG atggataggataagtagccatatgtcctatttttctttttgtgttttcagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCAgtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat Alignment from Spaln_nt2Genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG atggataggataagtagccatatgtcctatttttctttttgtgttttcagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCAgtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat Alignment from Pairagon GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG atggataggataagtagccatatgtcctatttttctttttgtgttttcagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCAgtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat Alignment from Exonerate_protein2genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG atggataggataagtagccatatgtcctatttttctttttgtgttttcagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCAgtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat Alignment from Exonerate_coding2genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG atggataggataagtagccatatgtcctatttttctttttgtgttttcagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCAgtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat Alignment from GeneWise GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG atggataggataagtagccatatgtcctatttttctttttgtgttttcagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCAgtgagtctcctccttatcttccagctgaaatgctttaatgatgtgtgcat #### Col17a1_ID10320_2 --> 2 - 1 Original Alignment ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAagtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc Alignment from CESAR ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAagtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc Alignment from Spaln_aa2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagTTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAAgtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc Alignment from Spaln_nt2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagTTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAAgtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc Alignment from Pairagon TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagTTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAAgtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc Alignment from Exonerate_protein2genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagTTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAAgtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc Alignment from Exonerate_coding2genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagTTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAAgtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc Alignment from GeneWise TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA ctgctgttcatatatgcagattcttcgtggttgcccattcccacctttagTTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAAgtgagtggctcctgttgatagatcccatgtgaaggccccaatctgtgacc #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAggtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAggtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaaacacaggcctgagccctgtaccttccacaccattctagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTTGTGCTCGAGGGGCATACAAAGCGTGTGGGCATTATCACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaggtaccatcccatacctacaccttgctctctgcccttctccagaatg #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc #### Coro1b_ID358_8 --> 1 - 0 Original Alignment gTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaaggTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac Alignment from CESAR gTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaaggTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac Alignment from Spaln_aa2Genome GTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaagGTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac Alignment from Spaln_nt2Genome GTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaagGTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac Alignment from Pairagon GTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaagGTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac Alignment from Exonerate_protein2genome GTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaagGTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac Alignment from Exonerate_coding2genome GTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaagGTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac Alignment from GeneWise GTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAG aagctggagaattgtgggaggttccaccccctccatccctttcccacaagGTTCTACAAACTGCATGAACGCAAGTGTGAGCCCATAGTCATGACTGTGCCAAGAAAGgtatggcagctggtaacccagtccacccacccccatccctgcacgaggac #### Cpeb3_ID7273_7 --> 2 - 0 Original Alignment gcTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacaggcTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa Alignment from CESAR gcTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacaggcTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa Alignment from Spaln_aa2Genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacagGCTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa Alignment from Spaln_nt2Genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacagGCTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa Alignment from Pairagon GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacagGCTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa Alignment from Exonerate_protein2genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacagGCTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa Alignment from Exonerate_coding2genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacagGCTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa Alignment from GeneWise GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG cttgggtgaagtactgttctctcctacctttctcccctttaaacccacagGCTATGCTTTCCTGTTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTTTCCAGCCCAACCATCAAGGATAAACCGgtaagggatgtggagttagctgctgctttcagcttctcctggtcatagaa #### Cpn1_ID8873_7 --> 0 - 1 Original Alignment GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAg tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAggtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact Alignment from CESAR GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAg tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAggtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact Alignment from Spaln_aa2Genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAGgtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact Alignment from Spaln_nt2Genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAGgtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact Alignment from Pairagon GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAGgtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact Alignment from Exonerate_protein2genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAGgtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact Alignment from Exonerate_coding2genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAGgtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact Alignment from GeneWise GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgtccaatcactgtgagattctgactcttcagccgcctccccccttctagGTCCACCACGGCATCAAAGGAATGGTCTTGGATGAGAACTCTAACAATCTCACAGGGGCTGTCATTTCTGTCACCGGCATCAACCACGACATCACTTCAGgtaagtttggaccacttggtaggccagaaagaccagccatcaaggacact #### Cpn1_ID8878_2 --> 2 - 0 Original Alignment tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagtgGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga Alignment from CESAR tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagtgGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga Alignment from Spaln_aa2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagTGGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga Alignment from Spaln_nt2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagTGGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga Alignment from Pairagon TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagTGGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga Alignment from Exonerate_protein2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagTGGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga Alignment from Exonerate_coding2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagTGGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga Alignment from GeneWise TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG cctatgatcctcctgcatgcccttcgaaatatcttccatttttcccccagTGGAACCGGAAGTTAAGTATGTGGGAAACATGCATGGGAACAAAGTGCTGGGCCGCAAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCAAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACACGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTATGAGGTGGCTGCTGCCCAGgtgagtattggagggaggtatgtaaaatcaaaactaaggccatcttatga #### Cpsf7_ID2867_7 --> 2 - 2 Original Alignment ggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTag gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAaggtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa Alignment from CESAR ggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTag gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAaggtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa Alignment from Spaln_aa2Genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa Alignment from Spaln_nt2Genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa Alignment from Pairagon GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa Alignment from Exonerate_protein2genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa Alignment from Exonerate_coding2genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa Alignment from GeneWise GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG gtttgtatgtatgtatttaccggtcttgctccgctctgtgtgtcacccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagatgatggacctggagtaacactctcctgaagtttggcagggaaaa #### Cpt1a_ID30_2 --> 0 - 2 Original Alignment AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCac taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCacgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct Alignment from CESAR AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCac taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCacgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct Alignment from Spaln_aa2Genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCACgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct Alignment from Spaln_nt2Genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCACgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct Alignment from Pairagon AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCACgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct Alignment from Exonerate_protein2genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCACgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct Alignment from Exonerate_coding2genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCACgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct Alignment from GeneWise AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC taaggatgaacttggggaggaagcagcttcttgttttattacgaacccagAATGGCATCATCACTGGTGTGTTCCCTGCGAGTCCCTCCAGCTGGCTTATTGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCTTAGACACCACgtaaggaacccacccccaccctccgcatcttgaagaagatggtgttacct #### Cpt1a_ID33_5 --> 0 - 0 Original Alignment TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct Alignment from CESAR TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct Alignment from Spaln_aa2Genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct Alignment from Spaln_nt2Genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct Alignment from Pairagon TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct Alignment from Exonerate_protein2genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct Alignment from Exonerate_coding2genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct Alignment from GeneWise TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT acgtggcttggagaagggtgtttaattcaattcgtttactcctcttgaagTACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGGCCAAAACTACAGTGGTATTTGAAGCTAAAATCATGGTGGGCCACAAATTATgtaagtaattgcaagagtgctgtgaaagttcttacttgggtaccagggct #### Cpt1a_ID38_10 --> 1 - 2 Original Alignment aGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACag atctccccacctgtacaactgattttagttctttgctctttccctcctagaGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACaggtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt Alignment from CESAR aGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACag atctccccacctgtacaactgattttagttctttgctctttccctcctagaGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACaggtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt Alignment from Spaln_aa2Genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG atctccccacctgtacaactgattttagttctttgctctttccctcctagAGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACAGgtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt Alignment from Spaln_nt2Genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG atctccccacctgtacaactgattttagttctttgctctttccctcctagAGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACAGgtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt Alignment from Pairagon AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG atctccccacctgtacaactgattttagttctttgctctttccctcctagAGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACAGgtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt Alignment from Exonerate_protein2genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG atctccccacctgtacaactgattttagttctttgctctttccctcctagAGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACAGgtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt Alignment from Exonerate_coding2genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG atctccccacctgtacaactgattttagttctttgctctttccctcctagAGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACAGgtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt Alignment from GeneWise AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG atctccccacctgtacaactgattttagttctttgctctttccctcctagAGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCGGTAGAAAAGGCAGCATACTTCGTTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCATAGACAGCTATGCCAAATCTCTACTGCATGGAAGATGTTTCGACAGgtaggtcccatttttaatctctggggttgatggggggttgtgggagatgt #### Crtac1_ID8466_8 --> 0 - 2 Original Alignment GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCcg ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTcggtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag Alignment from CESAR GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCcg ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTcggtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag Alignment from Spaln_aa2Genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTCGgtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag Alignment from Spaln_nt2Genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTCGgtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag Alignment from Pairagon GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTCGgtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag Alignment from Exonerate_protein2genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTCGgtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag Alignment from Exonerate_coding2genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTCGgtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag Alignment from GeneWise GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG ttgctcttcgttaccctcctgtttctgataacgtggtttggttctcccagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCATCAGCCAATCATCCCTTTCGgtttgcaacccacaccattggcagatggatggcggatggaaaagttgaag #### Crtac1_ID8481_4 --> 2 - 0 Original Alignment gtGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctaggtGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc Alignment from CESAR gtGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctaggtGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc Alignment from Spaln_aa2Genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctagGTGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc Alignment from Spaln_nt2Genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctagGTGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc Alignment from Pairagon GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctagGTGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc Alignment from Exonerate_protein2genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctagGTGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc Alignment from Exonerate_coding2genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctagGTGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc Alignment from GeneWise GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG tccctgtgtcctgccactatccaccagcggccttctctttacatccctagGTGTGGCCACATACACAGACAAGTTGTTCAAGTTCCGAAATAATCGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCAGGACGCTCCGTGGCATGTGTAGACAGGACAgtgagcgcaagggcccaggagggcctgggaggaagcagagggcctaaggc #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga Alignment from Exonerate_protein2genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga Alignment from Exonerate_coding2genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga Alignment from GeneWise AGCGCAGAGCCAGGAAGCACACCCCGGAAG ttgcttgccacactcccaaatcctcagccaaagaaatgttttcttcgcagAGCGCAGAACCAGGAAGCACACCCCGGAAGgtaggttgagttgatgcagggactgacctggatggcaggaatggagagga #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctgctatgacatcatcactggccctctgctccatctgttatacttttcaggGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCggcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctgctatgacatcatcactggccctctgctccatctgttatacttttcaggGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCggcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from Exonerate_coding2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgcaagtttggatttgtgagtgggggcggggcttgtgagcctaattggcag Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCGAGCGA--------- ctgctatgacatcatcactggccctctgctccatctgttatacttttcagGGGTCACGACGTGGCGCGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAACTGGTCGGAGTGGTGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGGCAAGTTTGGATTTgtgagtgggggcggggcttgtgagcctaattggcag #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctaggcACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctaggcACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC tgacaaggcgtggtgacttccagtcgagtcgatgtcaccctctattctagGCACGGCGGGCTCGGGGGCAGAGAACCTGACCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCATGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtaagaagtgatctcaggtggggccctcatccatcatgggtgtggttggc #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagagTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagagTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagAGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagAGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagAGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagAGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagAGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG cctgagtcaaaatctggccttaaatacttatctcatttctgactctgcagAGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAAGATCCCCTGCCCCAGgtgagtatgctgtgttgaggagagacaaaggccccttaatcctctttccc #### Ctsf_ID677_5 --> 0 - 1 Original Alignment GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAg ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAggtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc Alignment from CESAR GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAg ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAggtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc Alignment from Spaln_aa2Genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAGgtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc Alignment from Spaln_nt2Genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAGgtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc Alignment from Pairagon GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAGgtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc Alignment from Exonerate_protein2genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAGgtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc Alignment from Exonerate_coding2genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAGgtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc Alignment from GeneWise GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG ttactggggtctggctggacttgtaagtcacttgtgctgacttccggcagGACTTCTCTGTGAAGATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAGgtgaggctgagccttgtcatctgcttccattaggcctgggccttctcccc #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_aa2Genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_protein2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_coding2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG actgcacagggcctgaagagagagccctcatgattgcttttaattttcagGGCAGTATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtatgggtcccgatctagccccctttcttcagaccaaccccttcagaggg #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATagttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATagttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcataaagaccctgtctgccttgtttcagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCAGAATGAAAATAgttggtgggggtccctgtaggtgggtccaggttaatactgctgggctaag #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG ggagaaagagaggtgccctggactcagctgctttgttttaatttcaacagCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCCGTCTTGCTGGTGGGCTTTGGCAAGGAGGAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCCTGGGGAGCTCACTGGGGTGAGAAGgtgagagagtggaacagcaatggggcaggccataacgccatctttatctt #### Ctsw_ID1018_8 --> 2 - 0 Original Alignment caATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagcaATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca Alignment from CESAR caATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagcaATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca Alignment from Spaln_aa2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagCAATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca Alignment from Spaln_nt2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagCAATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca Alignment from Pairagon CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagCAATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca Alignment from Exonerate_protein2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagCAATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca Alignment from Exonerate_coding2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagCAATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca Alignment from GeneWise CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG aggcttggcttgatggcaccttcaaggctatttcctttatttgaaagcagCAATTGCCCACTATCTGGCTGTGCATGGACCCATCACCGTGACCATCAATATGAAACTACTCCAGgtgagcagacagggcaaagtgaggggagaaagagaggtgccctggactca #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagagGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagagGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagagTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAggtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagagTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAggtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgccacgagactgacctactcgcttgctctctcttcacagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGgtaagaaagtcttagggtgattggcagatgggcaggggaaatctcccacc #### Ctsw_ID1024_2 --> 0 - 1 Original Alignment GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAggtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt Alignment from CESAR GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAggtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt Alignment from Spaln_aa2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAGgtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt Alignment from Spaln_nt2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAGgtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt Alignment from Pairagon GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAGgtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt Alignment from Exonerate_protein2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAGgtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt Alignment from Exonerate_coding2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAGgtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt Alignment from GeneWise GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG gcaatgagactggtgtcacaataattcctttaatcttctcttccctatagGATGCAGGCCCCCGACCACTGGAGCTGAAGGAAGTCTTTAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAGgtaacccaggcacagatgttcctggtatgacttttgctgtccacttaagt #### Cutc_ID8808_3 --> 2 - 1 Original Alignment gtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGg tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtaggtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGggtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg Alignment from CESAR gtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGg tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtaggtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGggtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg Alignment from Spaln_aa2Genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtagGTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGGgtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg Alignment from Spaln_nt2Genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtagGTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGGgtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg Alignment from Pairagon GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtagGTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGGgtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg Alignment from Exonerate_protein2genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtagGTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGGgtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg Alignment from Exonerate_coding2genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtagGTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGGgtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg Alignment from GeneWise GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG tctcatatttaatgaaactttttgtttcacctctgtttaacctgttgtagGTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGGACCACACCCAGTATGGgtaagtaactcccccaccaccaccaccaagtttctcgaacacatcttggg #### Cwf19l1_ID8937_7 --> 1 - 0 Original Alignment aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagaAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg Alignment from CESAR aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagaAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg Alignment from Spaln_aa2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagAAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg Alignment from Spaln_nt2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagAAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg Alignment from Pairagon AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagAAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg Alignment from Exonerate_protein2genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagAAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg Alignment from Exonerate_coding2genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagAAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg Alignment from GeneWise AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ttttataaagtaaagtgatggagatctgccccattctactttcttggcagAAACCATGTTGTTCTACAAGAAAGCGCACAGCATGCCACTCGCTTCATAGCACTGGCAAATGTTGGAAATCCTGAAAAGAAGAAGgtaagagcttgagtgattggatgggttacttggccttcagagctttcttg #### Cwf19l1_ID8940_4 --> 2 - 1 Original Alignment ctCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGg tgttcagagcagatccagacccatatggtcattctactttctttccacagctCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGggtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga Alignment from CESAR ctCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGg tgttcagagcagatccagacccatatggtcattctactttctttccacagctCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGggtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga Alignment from Spaln_aa2Genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccagacccatatggtcattctactttctttccacagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGGgtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga Alignment from Spaln_nt2Genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccagacccatatggtcattctactttctttccacagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGGgtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga Alignment from Pairagon CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccagacccatatggtcattctactttctttccacagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGGgtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga Alignment from Exonerate_protein2genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccagacccatatggtcattctactttctttccacagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGGgtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga Alignment from Exonerate_coding2genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccagacccatatggtcattctactttctttccacagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGGgtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga Alignment from GeneWise CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccagacccatatggtcattctactttctttccacagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACCTACCTGGgtaattcaagaaaaattttgtaatgaatttagtacaaagaaaaaaataga #### Cyp17a1_ID9993_7 --> 1 - 1 Original Alignment cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagcATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTggtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg Alignment from CESAR cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagcATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTggtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg Alignment from Spaln_aa2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagCATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTGgtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg Alignment from Spaln_nt2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagCATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTGgtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg Alignment from Pairagon CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagCATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTGgtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg Alignment from Exonerate_protein2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagCATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTGgtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg Alignment from Exonerate_coding2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagCATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTGgtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg Alignment from GeneWise CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tggagctgggggctgaccatttctctttatggaagtatcctgtgttttagCATTGGAGAGTTTGCCATCCCAAAGGATACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTGgtaatgtcttgtccattcgatgctggctcctgcaccacacagtcatcctg #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ggaagtgaggctccttcctcatcctcttgactaactgttgggcttttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTGGTGCACAATCCTGAGgtacgcgtctctccaactcttgtcttgcctacatgatccaaccagccaac #### Cyp2c29_ID7760_3 --> 2 - 1 Original Alignment gcGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAg catacttgcctgttcttatcatctatttctatattttaataattcctcaggcGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAggtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa Alignment from CESAR gcGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAg catacttgcctgttcttatcatctatttctatattttaataattcctcaggcGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAggtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa Alignment from Spaln_aa2Genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG catacttgcctgttcttatcatctatttctatattttaataattcctcagGCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGgtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa Alignment from Spaln_nt2Genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG catacttgcctgttcttatcatctatttctatattttaataattcctcagGCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGgtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa Alignment from Pairagon GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG catacttgcctgttcttatcatctatttctatattttaataattcctcagGCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGgtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa Alignment from Exonerate_protein2genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG catacttgcctgttcttatcatctatttctatattttaataattcctcagGCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGgtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa Alignment from Exonerate_coding2genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG catacttgcctgttcttatcatctatttctatattttaataattcctcagGCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGgtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa Alignment from GeneWise GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG catacttgcctgttcttatcatctatttctatattttaataattcctcagGCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGTATGGGTAAACGGAACATTGAGGACCGTGTTCAAGAAGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGgtacccaccaatttgtacagttgcaacttggtttagatgtgcatgcctaa #### Cyp2c29_ID7762_5 --> 0 - 0 Original Alignment GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt Alignment from CESAR GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt Alignment from Spaln_aa2Genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt Alignment from Spaln_nt2Genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt Alignment from Pairagon GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt Alignment from Exonerate_protein2genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt Alignment from Exonerate_coding2genome GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt Alignment from GeneWise GTCTGCAATAGTTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAATAGTAAAAAATTTTAATTATCTAAAAAGTTATTTGTTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAG ctttaaagcaatacatattgacggagtaattattttttttaatttaccagGTCTGCAATAGCTTCCCTTCACTCATTGACTATTGTCCTGGAAGTCATCACAAAGTAGTGAAAAATTTTAATTATCTAAAAAGTTATTTATTGGAGAAAATAAAAGAACACAAGGAATCACTGGATGTTACAAACCCCCGTGACTTTATTGATTATTACCTAATTAAACAAAAACAGgtatgttgttgttatgattattatattgtttaagcgttttgtcgtttgtt #### Cyp2c29_ID7763_6 --> 0 - 1 Original Alignment GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAggtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg Alignment from CESAR GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAggtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg Alignment from Spaln_aa2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAGgtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg Alignment from Spaln_nt2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAGgtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg Alignment from Pairagon GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAGgtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg Alignment from Exonerate_protein2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAGgtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg Alignment from Exonerate_coding2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAGgtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg Alignment from GeneWise GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agatatgctagtaaataatttatcagatgtctgggtatccccttccccagGTAAACCACATTGAACAATCAGAGTTCTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAGgtaagtacacagttggtggatcacaatggtcctgcagattgctggaaagg #### Cyp2c29_ID7764_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagCTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagCTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagCTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagCTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagCTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG tttcccccctctccccctgttttttcccgcgggtctcctctttgccttagCTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCTTATACAGATGCTATGATTCAGGAGGTTCAGAGATTCATTGACCTCCTCCCCACTAGCCTGCCTCACGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAGgtgaggttgttttttgtttgttttgtagttgttgtttgtttgtcgatttg #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccaggcCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATggtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccaggcCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATggtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtctccaggaggtactctgtactgttcttgaactcatgtccagGCCTTACATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGCCACTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCGCGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtaggggtaggtttagaacctgatctagttatggcaatatcagtgatttt #### Cyp2c39_ID7787_6 --> 0 - 1 Original Alignment GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAg agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTggtatgggcataattggtagactccagcagtcctctaagtaagacaatacc Alignment from CESAR GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAg agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTggtatgggcataattggtagactccagcagtcctctaagtaagacaatacc Alignment from Spaln_aa2Genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTGgtatgggcataattggtagactccagcagtcctctaagtaagacaatacc Alignment from Spaln_nt2Genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTGgtatgggcataattggtagactccagcagtcctctaagtaagacaatacc Alignment from Pairagon GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTGgtatgggcataattggtagactccagcagtcctctaagtaagacaatacc Alignment from Exonerate_protein2genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTGgtatgggcataattggtagactccagcagtcctctaagtaagacaatacc Alignment from Exonerate_coding2genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTGgtatgggcataattggtagactccagcagtcctctaagtaagacaatacc Alignment from GeneWise GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG agatatgccgataaataatttgtctgatacatgaatattttgtatttcagGCAAATCACATTCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACTGgtatgggcataattggtagactccagcagtcctctaagtaagacaatacc #### Cyp2c44_ID8885_6 --> 0 - 1 Original Alignment GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAg acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAggtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg Alignment from CESAR GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAg acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAggtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg Alignment from Spaln_aa2Genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAGgtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg Alignment from Spaln_nt2Genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAGgtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg Alignment from Pairagon GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAGgtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg Alignment from Exonerate_protein2genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAGgtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg Alignment from Exonerate_coding2genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAGgtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg Alignment from GeneWise GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG acatttgcctcctctttagctcacagagttaaatgtcttgttatctttagGAGAAACACAACCTGAAATCTGATTTTAATTTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACAGCGGGCACAGAGACAACCAGCACCACCCTGAGATTTGGGCTTCTGCTCCTTGTCAAGCACCCAGAGGTGCAAGgtattttgagtgaagaaggaggtgggggttactgtgcttcatgggaatgg #### Cyp2c50_ID7865_6 --> 0 - 1 Original Alignment GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAg tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAggtaagattaatacaggtattgaactactatgctcttataagacacagaca Alignment from CESAR GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAg tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAggtaagattaatacaggtattgaactactatgctcttataagacacagaca Alignment from Spaln_aa2Genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAGgtaagattaatacaggtattgaactactatgctcttataagacacagaca Alignment from Spaln_nt2Genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAGgtaagattaatacaggtattgaactactatgctcttataagacacagaca Alignment from Pairagon GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAGgtaagattaatacaggtattgaactactatgctcttataagacacagaca Alignment from Exonerate_protein2genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAGgtaagattaatacaggtattgaactactatgctcttataagacacagaca Alignment from Exonerate_coding2genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAGgtaagattaatacaggtattgaactactatgctcttataagacacagaca Alignment from GeneWise GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaaatcgaaaaataaataacatgtccatgtgtgtccttccacagGAAAACAGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGCCAGAGACAACAAGTACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAGgtaagattaatacaggtattgaactactatgctcttataagacacagaca #### Cyp2c54_ID7852_6 --> 0 - 1 Original Alignment GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAg atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGggtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata Alignment from CESAR GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAg atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGggtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata Alignment from Spaln_aa2Genome GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAG atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGGgtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata Alignment from Spaln_nt2Genome GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAG atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGGgtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata Alignment from Pairagon GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAG atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGGgtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata Alignment from Exonerate_protein2genome GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAG atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGGgtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata Alignment from Exonerate_coding2genome GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAG atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGGgtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata Alignment from GeneWise GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAG atagccacacaatgaaattatccaatatcacatttacctttacaatacagCAAGACGACAATCATCCTTTGAAAAATAATTATGAACACCTGGCAATAACAGTGACAGACCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTTACGGgtgagtataaaacaggtgttgaaccactgtgctcttgtaagatgctgata #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctacttctactccaggatttactctgtaaaacttttctctctccattcaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctacttctactccaggatttactctgtaaaacttttctctctccattcaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctacttctactccaggatttactctgtaaaacttttctctctccattcagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaggttgcaggtttagaggaagagtgaccagctaggtcttgcaaattct #### Cyp2c55_ID7726_3 --> 2 - 1 Original Alignment ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATggtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct Alignment from CESAR ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATggtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct Alignment from Spaln_aa2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagGGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATGgtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct Alignment from Spaln_nt2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagGGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATGgtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct Alignment from Pairagon GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagGGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATGgtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct Alignment from Exonerate_protein2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagGGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATGgtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct Alignment from Exonerate_coding2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagGGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATGgtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct Alignment from GeneWise GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG tatgccctcccctgtctctcatttctagtttgctgtctctgtgtgtatagGGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATTGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATGgtaagtatcaaatggtgggtagccgcgcacctgtttgcctggctctgcct #### Cyp2c55_ID7728_5 --> 0 - 0 Original Alignment GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt Alignment from CESAR GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt Alignment from Spaln_aa2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt Alignment from Spaln_nt2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt Alignment from Pairagon GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt Alignment from Exonerate_protein2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt Alignment from Exonerate_coding2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt Alignment from GeneWise GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG gtgagtgactaattcagcctaataaacatcttctccctccccttctccagGTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGACGAGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGAGACTTCATTGACTGCTTCCTGATCAGAATGGAACAGgtcagttgttatttgataatttgtgttccatcaatttttactaatctttt #### Cyp2c66_ID7748_3 --> 2 - 1 Original Alignment ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg cctacttccttttctgagcactccctataggtttttattgtctttcctagggGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAggtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa Alignment from CESAR ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg cctacttccttttctgagcactccctataggtttttattgtctttcctagggGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAggtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa Alignment from Spaln_aa2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cctacttccttttctgagcactccctataggtttttattgtctttcctagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa Alignment from Spaln_nt2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cctacttccttttctgagcactccctataggtttttattgtctttcctagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa Alignment from Pairagon GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cctacttccttttctgagcactccctataggtttttattgtctttcctagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa Alignment from Exonerate_protein2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cctacttccttttctgagcactccctataggtttttattgtctttcctagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa Alignment from Exonerate_coding2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cctacttccttttctgagcactccctataggtttttattgtctttcctagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa Alignment from GeneWise GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cctacttccttttctgagcactccctataggtttttattgtctttcctagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtaagtgtcacccatcctggacttctctctttttatgacatcttccagaa #### Cyp2c67_ID7794_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAggtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac Alignment from CESAR GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAggtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAGgtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAGgtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac Alignment from Pairagon GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAGgtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAGgtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAGgtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac Alignment from GeneWise GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gccccctgagatattcatacattgcctttcactctgtcccccacccccagGGAACACAGGTAATGACATCATTGACATCCGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAACTTTAAGAAAAGTCACTACTTTGTGCCTTTCTCAGCAGgtcagtgaaagtcatttccaaggctcaagtgacatgaggatctgtgggac #### Cyp2c67_ID7795_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagctAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagctAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacagtatatattcttcccatcccaataactagtctcttttctctttagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAACTGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtagagtgattcttccctgttatgcttctgtgcttttgatgttcccattt #### Cyp2c68_ID7807_6 --> 0 - 1 Original Alignment AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTGCTCTTGATGAAGCACACACACATCACAggttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa Alignment from CESAR AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTGCTCTTGATGAAGCACACACACATCACAggttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa Alignment from Spaln_aa2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTGCTCTTGATGAAGCACACACACATCACAGgttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa Alignment from Spaln_nt2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTA------TTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAGgttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa Alignment from Pairagon AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTA------TTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAGgttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa Alignment from Exonerate_protein2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTGCTCTTGATGAAGCACACACACATCACAGgttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa Alignment from Exonerate_coding2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTGCTCTTGATGAAGCACACACACATCACAGgttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa Alignment from GeneWise AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattgtgcaatgacaatatccctcagatttgtgcatgtgccatcccctagAAAAATGGCATTGAGCACATGGACTATACCATTGAGCACCTGGCAACATTAGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTGCTCTTGATGAAGCACACACACATCACAGgttgttatacaggtattgaagcacagcattcctaaaagttgctaggacaa #### Cyp2c68_ID7811_2 --> 0 - 1 Original Alignment TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGg agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGggtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca Alignment from CESAR TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGg agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGggtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca Alignment from Spaln_aa2Genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGGgtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca Alignment from Spaln_nt2Genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGGgtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca Alignment from Pairagon TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGGgtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca Alignment from Exonerate_protein2genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGGgtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca Alignment from Exonerate_coding2genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGGgtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca Alignment from GeneWise TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG agacaatgactttgtttttactaatatttctcccttgcttcacctttcagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATCTTACATGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCTGGAAGAGGAAGGATTCCAGTCTTCGACAAAGTTTCTAAGGGAAAGGgtaagagtgtatttgtgtgcttatgtgtatactgggcagtttccagagca #### Cyp2c69_ID7827_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAggtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc Alignment from CESAR GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAggtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAGgtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAGgtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc Alignment from Pairagon GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAGgtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAGgtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAGgtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc Alignment from GeneWise GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG gcaccctgagacatccatacactgctttaccctttgtgcctcctcttcagGGAACCCAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGTGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCGTTCTCAGCAGgtacacgaaagtcactcccaaggctccagtgacataaggatctgtggccc #### Cyp2c69_ID7828_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagCTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagCTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagCTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagCTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagCTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG atacaggctacatttttcccatttcattaataccttctcccctttttcagCTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGCGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtgagcttgtttcccgtcagacttctgtgttcttggtgttcccagaagca #### D19Bwg1357e_ID5840_12 --> 0 - 0 Original Alignment GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg Alignment from CESAR GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg Alignment from Spaln_aa2Genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg Alignment from Spaln_nt2Genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg Alignment from Pairagon GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg Alignment from Exonerate_protein2genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg Alignment from Exonerate_coding2genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg Alignment from GeneWise GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA gccagctctgtatgaaatcttttaaccttgttttcttatccattttttagGGCCAGTACTCTCACTTGGTTCTCCTAGCGGCGTTTGACTGTATTGATGACACTAAGCTTGTGAAGCAGATAATCATGTCGgtttgtaacttgaatgcctgggttttgggttattttacattcctgttctg #### D19Bwg1357e_ID5843_9 --> 1 - 0 Original Alignment gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcaggGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac Alignment from CESAR gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcaggGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac Alignment from Spaln_aa2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcagGGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac Alignment from Spaln_nt2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcagGGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac Alignment from Pairagon GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcagGGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac Alignment from Exonerate_protein2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcagGGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac Alignment from Exonerate_coding2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcagGGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac Alignment from GeneWise GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttgcttgctagagctgacactcaggtacctccttttgtttcagGGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAgtaagcgcctgctttctgttcctttatcagcattaagccactgctggcac #### D19Bwg1357e_ID5844_8 --> 0 - 2 Original Alignment TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaa agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaagtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca Alignment from CESAR TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaa agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaagtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca Alignment from Spaln_aa2Genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAAgtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca Alignment from Spaln_nt2Genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAAgtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca Alignment from Pairagon TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAAgtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca Alignment from Exonerate_protein2genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAAgtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca Alignment from Exonerate_coding2genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAAgtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca Alignment from GeneWise TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA agttgtctttgaagtgatcacatttggatttccttgatttgtctcttcagTCAGCAGATCACCCAACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAAgtgagtgagcatttttattaataatttaaaggcagcatttgagggagcca #### D19Bwg1357e_ID5847_5 --> 0 - 1 Original Alignment ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAg taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAggtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc Alignment from CESAR ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAg taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAggtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc Alignment from Spaln_aa2Genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAGgtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc Alignment from Spaln_nt2Genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAGgtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc Alignment from Pairagon ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAGgtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc Alignment from Exonerate_protein2genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAGgtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc Alignment from Exonerate_coding2genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAGgtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc Alignment from GeneWise ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgtaagaaatagtgtaaatggtaagtcacaggtctcttttgccacagATTGCCTTTGCACATGACTCAACACGCGTGATCCAGTGCTTCATTCAGTATGGGAATGAGGAGCAGAGGAAGCAAGCTTTCCAAGAGTTGCAAGgtaagtttaatagcatgtgtttatcacacaataaggtcacttgttatctc #### D19Bwg1357e_ID5848_4 --> 1 - 0 Original Alignment aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagaAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc Alignment from CESAR aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagaAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc Alignment from Spaln_aa2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagAAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc Alignment from Spaln_nt2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagAAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc Alignment from Pairagon AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagAAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc Alignment from Exonerate_protein2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagAAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc Alignment from Exonerate_coding2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagAAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc Alignment from GeneWise AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ggtgtttggtttccatgctaaaaataaccagttgtgccctctttttccagAAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtgtgtagaggtgttcattattccatttaaaaaatacaaattcaggcttc #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAggtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAggtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tgtcttcagtcacactcacacacacacatctgccttctccttcctgtcagAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGGTTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtgagcattcttaaatttaaattagattgttagttatgctaactcctaag #### Dagla_ID2752_18 --> 0 - 2 Original Alignment GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCag ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCaggtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga Alignment from CESAR GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCag ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCaggtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga Alignment from Spaln_aa2Genome GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGgtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga Alignment from Spaln_nt2Genome GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGgtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga Alignment from Pairagon GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGgtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga Alignment from Exonerate_protein2genome GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGgtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga Alignment from Exonerate_coding2genome GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGgtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga Alignment from GeneWise GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG ggaagccacagggctaggctggtaactcctccaccctttcccggttgcagGTGCTGGAGAATTACAACAAAGGAAAGACAGCACTGCTGTCCACTGCAAAGGTCATGGTGAGCTCCACTGAGGTAGACCTCACTCCTGAGCTCATTTTCCAACAACAGCCATTACCCACAGGACCACCTCTGCCTACTGACTTGGCACTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGgtcagtcttgcctcaccacttgacccctagggagggagtgtggattcaga #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccaggATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccaggATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg Alignment from Exonerate_coding2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatggggaaaaaaccaaacagaccctgcgcaaaccatcccttttccccagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACTAAGCCCAAAgtaagatcccaatagctccccaaccactgggaagtcctgcctgtcccttg #### Dagla_ID2762_8 --> 0 - 2 Original Alignment CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCtcgttattacagcatgtccccagccacagtagcatagcggtcagggaagata Alignment from CESAR CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCtcgttattacagcatgtccccagccacagtagcatagcggtcagggaagata Alignment from Spaln_aa2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCTCgttattacagcatgtccccagccacagtagcatagcggtcagggaagata Alignment from Spaln_nt2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCTCgttattacagcatgtccccagccacagtagcatagcggtcagggaagata Alignment from Pairagon CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCTCgttattacagcatgtccccagccacagtagcatagcggtcagggaagata Alignment from Exonerate_protein2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCTCgttattacagcatgtccccagccacagtagcatagcggtcagggaagata Alignment from Exonerate_coding2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCTCgttattacagcatgtccccagccacagtagcatagcggtcagggaagata Alignment from GeneWise CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tatcaggctggaagggcagaagtcacgatcctttctgttcaccatttcagCATGAGATGTTACGTTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTTGCTCGGTCCTGCTCgttattacagcatgtccccagccacagtagcatagcggtcagggaagata #### Dagla_ID2767_4 --> 2 - 2 Original Alignment gaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from CESAR gaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_aa2Genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_nt2Genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Pairagon GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_protein2genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_coding2genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from GeneWise GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag #### Dagla_ID2769_2 --> 1 - 1 Original Alignment gTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGg gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcaggTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGggtaagagacccccacaggtggctgagactcctagagggctaccctcctcc Alignment from CESAR gTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGg gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcaggTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGggtaagagacccccacaggtggctgagactcctagagggctaccctcctcc Alignment from Spaln_aa2Genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcagGTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGGgtaagagacccccacaggtggctgagactcctagagggctaccctcctcc Alignment from Spaln_nt2Genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcagGTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGGgtaagagacccccacaggtggctgagactcctagagggctaccctcctcc Alignment from Pairagon GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcagGTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGGgtaagagacccccacaggtggctgagactcctagagggctaccctcctcc Alignment from Exonerate_protein2genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcagGTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGGgtaagagacccccacaggtggctgagactcctagagggctaccctcctcc Alignment from Exonerate_coding2genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcagGTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGGgtaagagacccccacaggtggctgagactcctagagggctaccctcctcc Alignment from GeneWise GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG gcacaaggcacagaaacagcccacccttgagcctctgtgcctcctggcagGTTTGTAATCCTGTCTGTGGTGCTCTTCGGTTTGGTTTATAACCCACATGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCTGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTATGTGCTCTACATCCGCCTGGgtaagagacccccacaggtggctgagactcctagagggctaccctcctcc #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg #### Dak_ID2903_10 --> 2 - 1 Original Alignment agGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAg gttaggtagttcccctccccactcacagtacatacctgattaccctttagagGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAggtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa Alignment from CESAR agGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAg gttaggtagttcccctccccactcacagtacatacctgattaccctttagagGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAggtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa Alignment from Spaln_aa2Genome AGGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAG gttaggtagttcccctccccactcacagtacatacctgattaccctttagAGGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAGgtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa Alignment from Spaln_nt2Genome AGGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAG gttaggtagttcccctccccactcacagtacatacctgattaccctttagAGGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAGgtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa Alignment from Pairagon AGGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAG gttaggtagttcccctccccactcacagtacatacctgattaccctttagAGGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAGgtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa Alignment from Exonerate_protein2genome AGGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAG gttaggtagttcccctccccactcacagtacatacctgattaccctttagAGGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAGgtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa Alignment from Exonerate_coding2genome AGGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAG gttaggtagttcccctccccactcacagtacatacctgattaccctttagAGGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAGgtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa Alignment from GeneWise AGGGCCGTGGAGTGAAGGTCGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAG gttaggtagttcccctccccactcacagtacatacctgattaccctttagAGGGCCGTGGAGTGAAGGTTGCCCATGCCCTGGTGGGCACCTTCATGTCAGCGCTGGAGATGCCTGGTGTGTCTCTTACTTTGATGCTTGTGGATGAACCCGTGCTGAAGCTAATAGgtaagcgctggacctgggagcattgctagtcaaaacccccagccagccaa #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcaggcTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGggtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcaggcTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGggtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tgcacagaagccaccaaaggtggggctgtttaatttatttttacttgcagGCTCTTCAGTGGTGCTGATAGTGAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGGgtgagcctagcctattgagaggacctttagccccttgtttttatgttcca #### Dclre1a_ID12119_8 --> 0 - 1 Original Alignment GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATg agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATggtaagcttattcaaagttcccatttcagtaatttctcctttttattacat Alignment from CESAR GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATg agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATggtaagcttattcaaagttcccatttcagtaatttctcctttttattacat Alignment from Spaln_aa2Genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATGgtaagcttattcaaagttcccatttcagtaatttctcctttttattacat Alignment from Spaln_nt2Genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATGgtaagcttattcaaagttcccatttcagtaatttctcctttttattacat Alignment from Pairagon GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATGgtaagcttattcaaagttcccatttcagtaatttctcctttttattacat Alignment from Exonerate_protein2genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATGgtaagcttattcaaagttcccatttcagtaatttctcctttttattacat Alignment from Exonerate_coding2genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATGgtaagcttattcaaagttcccatttcagtaatttctcctttttattacat Alignment from GeneWise GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG agcttggttgacgctgatgagcaaatcatgtctgtttttgccactcccagGGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCATTCCGACCCACAGGATGGACACACTCTAACAACATAACCAGCACAGCAGATATTATTCCCCAGACAAGAGGAAATATATCGATATATGgtaagcttattcaaagttcccatttcagtaatttctcctttttattacat #### Dclre1a_ID12120_7 --> 2 - 0 Original Alignment ccATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagccATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta Alignment from CESAR ccATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagccATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta Alignment from Spaln_aa2Genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagCCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta Alignment from Spaln_nt2Genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagCCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta Alignment from Pairagon CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagCCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta Alignment from Exonerate_protein2genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagCCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta Alignment from Exonerate_coding2genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagCCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta Alignment from GeneWise CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gtttaacaagctatgattttactgttttcttgtctttatctgacccacagCCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaaagaatcgaaatatgtatcttttaagatgagctaagaagggtgttta #### Dclre1a_ID12121_6 --> 1 - 1 Original Alignment aTACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAg ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagaTACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGggtaataggccacggtatctaatttacattaatatattagaaagatcaaca Alignment from CESAR aTACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAg ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagaTACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGggtaataggccacggtatctaatttacattaatatattagaaagatcaaca Alignment from Spaln_aa2Genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagATACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGGgtaataggccacggtatctaatttacattaatatattagaaagatcaaca Alignment from Spaln_nt2Genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagATACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGGgtaataggccacggtatctaatttacattaatatattagaaagatcaaca Alignment from Pairagon ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagATACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGGgtaataggccacggtatctaatttacattaatatattagaaagatcaaca Alignment from Exonerate_protein2genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagATACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGGgtaataggccacggtatctaatttacattaatatattagaaagatcaaca Alignment from Exonerate_coding2genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagATACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGGgtaataggccacggtatctaatttacattaatatattagaaagatcaaca Alignment from GeneWise ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG ctctctctgtctctgcctctgtcagtaattatttccatgttgctgggcagATACTGCAGCCCAGAATATACCTTCCCATCACAGCAGGAGGTTATCCAATTTGCCATCAACACAGCCTTCGAGGCTGTAACTCTAAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATCGGGAAGGAGAAAGTCTTCCTGGgtaataggccacggtatctaatttacattaatatattagaaagatcaaca #### Dclre1a_ID12124_3 --> 2 - 0 Original Alignment ggACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagggACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg Alignment from CESAR ggACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagggACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg Alignment from Spaln_aa2Genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagGGACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg Alignment from Spaln_nt2Genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagGGACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg Alignment from Pairagon GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagGGACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg Alignment from Exonerate_protein2genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagGGACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg Alignment from Exonerate_coding2genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagGGACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg Alignment from GeneWise GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG tatggattctcctcaccctaatgtgtcgtttttttgttgtttttcattagGGACGGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATTGAAGGGTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACACGGCCAGTTTATTGCAGCGAGgtgcgtttcagtcctctgaactctgtggaatgtcgtgtttgagaaacttg #### Ddb1_ID2918_3 --> 0 - 0 Original Alignment GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc Alignment from CESAR GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc Alignment from Spaln_aa2Genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc Alignment from Spaln_nt2Genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc Alignment from Pairagon GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc Alignment from Exonerate_protein2genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc Alignment from Exonerate_coding2genome GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc Alignment from GeneWise GGGGAGAGCAAAGACCTGCTGTTCATCTTGACTGCTAAATACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAAAGCATTGACATCATTACAAGAGCCCATGGCAATGTCCAG gctgaacaggttgttcctgcttttgaaatatggtgtctcttgctttctagGGGGAGAGCAAAGATCTGCTGTTCATCTTGACTGCTAAGTACAATGCCTGTATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATTGCAAGGGCCCATGGCAATGTCCAGgtgagttggctgcttcaggctgattagttttccctgcaaggactgctgtc #### Ddb1_ID2921_6 --> 2 - 0 Original Alignment tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagtcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat Alignment from CESAR tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagtcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat Alignment from Spaln_aa2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagTCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat Alignment from Spaln_nt2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagTCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat Alignment from Pairagon TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagTCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat Alignment from Exonerate_protein2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagTCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat Alignment from Exonerate_coding2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagTCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat Alignment from GeneWise TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gtcgtttgaaagtattgatccttttaatatttccctgcactatttttcagTCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCGATCACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtagggaaatgttttactatctaccttgccttccgttacatctgggccat #### Ddb1_ID2925_10 --> 0 - 1 Original Alignment CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAg ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAggtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct Alignment from CESAR CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAg ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAggtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct Alignment from Spaln_aa2Genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAGgtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct Alignment from Spaln_nt2Genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAGgtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct Alignment from Pairagon CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAGgtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct Alignment from Exonerate_protein2genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAGgtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct Alignment from Exonerate_coding2genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAGgtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct Alignment from GeneWise CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG ctgcccaagtgtcttgaggagttcttgagcatgtcttttcctgcttacagCTGGTAACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATTAAAGgtgaggtctggtgggcaaaggtgcagcttttacttgagtggctttggcct #### Ddb1_ID2934_19 --> 0 - 1 Original Alignment GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGGAGAAGAA---GAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAggtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc Alignment from CESAR GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGGAGAAGAA---GAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAggtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc Alignment from Spaln_aa2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGGAGAAGAA---GAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAGgtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc Alignment from Spaln_nt2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGG---AGAAGAAGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAGgtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc Alignment from Pairagon GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGGAGAAGAA---GAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAGgtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc Alignment from Exonerate_protein2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGGAGAAGAA---GAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAGgtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc Alignment from Exonerate_coding2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGGAGAAGAA---GAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAGgtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc Alignment from GeneWise GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG tcactcccactcactgcactaagaaggattgtgaaaaatgtaacttttagGCGCTGTCTAGCAGTGTCAGCTCCAGCAAACTTTTCTCTAGCAGTACTGCTCCTCATGAGACCTCCTTTGGAGAAGAA---GAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAGgtgagtacaagatcctttatccttttttgcttacagcatggcctgaatgc #### Ddb1_ID2936_21 --> 2 - 0 Original Alignment gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacaggaAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc Alignment from CESAR gaAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacaggaAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc Alignment from Spaln_aa2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacagGAAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc Alignment from Spaln_nt2Genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacagGAAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc Alignment from Pairagon GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacagGAAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc Alignment from Exonerate_protein2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacagGAAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc Alignment from Exonerate_coding2genome GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacagGAAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc Alignment from GeneWise GAAAACTACAGACTGTGGCTGAAAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAGCTGCTTGCCAGCATCAATAGCACG ggcaaccagagaaagctctactaaggagtgcccttggcatctatccacagGAAAACTACAGACTGTGGCTGATAAGGAAGTAAAAGGAGCTGTGTACTCTATGGTGGAGTTTAATGGGAAACTGCTGGCCAGCATCAATAGCACAgtgagctctatggggtgtacatgtttgtggattgcctctcccttctaagc #### Dmrt1_ID5475_2 --> 0 - 1 Original Alignment GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAggtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag Alignment from CESAR GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAggtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag Alignment from Spaln_aa2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAGgtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag Alignment from Spaln_nt2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAGgtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag Alignment from Pairagon GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAGgtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag Alignment from Exonerate_protein2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAGgtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag Alignment from Exonerate_coding2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAGgtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag Alignment from GeneWise GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG cgttttgcagaactctctgctggtgtgttcgattttttgtttccttgtagGTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATCCCGCTGCCCAGCGCAGCCGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCGAGCACCCCAACCCCCGCTGCCTCAGgtgagcaagggttgtggtctcccatgggattcaaccaaggaaagaaagag #### Dnajc4_ID1966_2 --> 1 - 0 Original Alignment gTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacaggTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac Alignment from CESAR gTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacaggTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac Alignment from Spaln_aa2Genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacagGTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac Alignment from Spaln_nt2Genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacagGTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac Alignment from Pairagon GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacagGTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac Alignment from Exonerate_protein2genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacagGTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac Alignment from Exonerate_coding2genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacagGTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac Alignment from GeneWise GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttggcctcctgagtacctaccctgcatccttttctgctacagGTCAGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGTCAAAAGAGgtaagtgtgcccccaaggtgagggagacaggggaaacctaagcttgacac #### Dnmbp_ID8853_13 --> 0 - 1 Original Alignment CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAggtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac Alignment from CESAR CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAggtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac Alignment from Spaln_aa2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac Alignment from Spaln_nt2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac Alignment from Pairagon CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac Alignment from Exonerate_protein2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac Alignment from Exonerate_coding2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac Alignment from GeneWise CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagctccagggctgcttcccattgcagACAAGTTACACAGTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCACGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtgagtctttgactcaggggaagtgtctttagagttaactcgattcctac #### Dnmbp_ID8861_5 --> 0 - 1 Original Alignment GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAg gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAggtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac Alignment from CESAR GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAg gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAggtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac Alignment from Spaln_aa2Genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAGgtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac Alignment from Spaln_nt2Genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAGgtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac Alignment from Pairagon GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAGgtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac Alignment from Exonerate_protein2genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAGgtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac Alignment from Exonerate_coding2genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAGgtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac Alignment from GeneWise GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG gtcatccatttcatctacttgtatcttgttttttttaatctcaattacagGTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTACAGTCTCAAAGCAATTGTTGGCAACCTTGGAAATCAGCGATGCTGTAGGAATGAGCTCATGTGATTGTTTGGTCCCAGgtgagttggaagaatggggaccttccgaagtgatataatagggaaatgac #### Dnmbp_ID8862_4 --> 2 - 0 Original Alignment acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagacATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg Alignment from CESAR acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagacATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg Alignment from Spaln_aa2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg Alignment from Spaln_nt2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg Alignment from Pairagon ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg Alignment from Exonerate_protein2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg Alignment from Exonerate_coding2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg Alignment from GeneWise ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gtagagccctcccttcacacagctgctgtgaagttcttacctcctggcagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAAAAGAGAGCCAAGGTGGTGGCGGAGCTATTGCAGATGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtgagagatgggaggtagcccaacgatttactcccaaagtgttggggttg #### Dnmbp_ID8866_2 --> 2 - 1 Original Alignment gaCAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGg tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcaggaCAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGggtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta Alignment from CESAR gaCAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGg tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcaggaCAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGggtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta Alignment from Spaln_aa2Genome GACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGG tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcagGACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGGgtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta Alignment from Spaln_nt2Genome GACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGG tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcagGACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGGgtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta Alignment from Pairagon GACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGG tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcagGACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGGgtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta Alignment from Exonerate_protein2genome GACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGG tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcagGACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGGgtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta Alignment from Exonerate_coding2genome GACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGG tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcagGACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGGgtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta Alignment from GeneWise GACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGCGAGAGGCTGTTTGTCTGCATCTGCGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGG tgtgatgtaaagaactctctgtgtgtaattgcttcttcttatctccgcagGACAGTTCCCCAGCAGTTTTGTGGAGATCGTGACAATTCCCAGTCTGAAAGAGGGTGAGCGGCTCTTTGTCTGCATCTGTGAATTCGTATCTCGAGAGCTGAACAGTCTTTCCCTCCATCGGGgtgagttaagcttcagaggtctgcagaaccttgcaaatgggaagctttta #### Dntt_ID8076_2 --> 1 - 0 Original Alignment tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagtGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac Alignment from CESAR tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagtGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac Alignment from Spaln_aa2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagTGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac Alignment from Spaln_nt2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagTGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac Alignment from Pairagon TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagTGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac Alignment from Exonerate_protein2genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagTGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac Alignment from Exonerate_coding2genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagTGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac Alignment from GeneWise TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT gtctcgttttggacactccttttactgatctcctctctttgccacctaagTGATTCAGTCAGCCACATTGTGGCAGAGAACAACTCAGGGTCAGATGTCCTGGAGTGGCTTCAGCTGCAAAACATCAAAGCCAGTTCCAAGCTCGAACTCTTGGACATCTCCTGGCTCATTGAATGCATGGGAGCTGGGAAGCCAGTAGAGATGATGGGGAGACATCAGCTTGTTgtaagtgtctcctttgctgggtggccactggcattggcaccagaatccac #### Dntt_ID8081_7 --> 2 - 2 Original Alignment gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcaggaTTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCaggtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa Alignment from CESAR gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcaggaTTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCaggtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa Alignment from Spaln_aa2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcagGATTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCAGgtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa Alignment from Spaln_nt2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcagGATTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCAGgtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa Alignment from Pairagon GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcagGATTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCAGgtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa Alignment from Exonerate_protein2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcagGATTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCAGgtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa Alignment from Exonerate_coding2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcagGATTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCAGgtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa Alignment from GeneWise GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcaacagccagtcctcttatgcctccctgtatgccggctctcctgcagGATTCCAGTACTATGAAGACCTTGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGTGGGTTCCGCAGgtctgcgatgtagctgttttggaacccctcttctctgaaatgatgaaaaa #### Dntt_ID8084_10 --> 0 - 0 Original Alignment CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct Alignment from CESAR CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct Alignment from Spaln_aa2Genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct Alignment from Spaln_nt2Genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct Alignment from Pairagon CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct Alignment from Exonerate_protein2genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct Alignment from Exonerate_coding2genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct Alignment from GeneWise CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG ccatgtacctgaaatattctgcactagattgccattgctttatattgcagCAATTTGAGAGAGACTTGCGGCACTATGCCACACACGAGAGGAAGATGATGCTGGACAACCATGCCCTATATGACAGGACTAAGgtgaggttcccttctggaagtgggtgactgaccttacctgtaagccctct #### Dock8_ID5386_9 --> 0 - 0 Original Alignment ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct Alignment from CESAR ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct Alignment from Spaln_aa2Genome ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct Alignment from Spaln_nt2Genome ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct Alignment from Pairagon ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct Alignment from Exonerate_protein2genome ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct Alignment from Exonerate_coding2genome ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct Alignment from GeneWise ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG gcatttgagaccaaaaatacaatacctcaacattttatatttcgttccagATCTCAGAAAATTTCCACTGTGACCTGAACTCTGACCAGTTCAAAGGGTTTCTGCGAGCTCACACGCCCTCAATTGACCCATCAAGTCAGGCTAGGTCTGCTGTGTTTTCTGTCACCTACCCCACTTCAGACATCCACCTGGTTGTGAAGgtgagtacaaacagtccaagatgcatgttctgaaattcctgttgttatct #### Dock8_ID5390_13 --> 0 - 1 Original Alignment GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAg agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAggtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca Alignment from CESAR GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAg agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAggtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca Alignment from Spaln_aa2Genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAGgtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca Alignment from Spaln_nt2Genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAGgtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca Alignment from Pairagon GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAGgtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca Alignment from Exonerate_protein2genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAGgtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca Alignment from Exonerate_coding2genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAGgtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca Alignment from GeneWise GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcagcagaggctccccacttgctctgcttttgcccccacagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAGgtgattttggcttctcctaagcatcttcagtcaaggctacatctgttgca #### Dock8_ID5396_17 --> 1 - 0 Original Alignment gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg Alignment from CESAR gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg Alignment from Spaln_aa2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg Alignment from Spaln_nt2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg Alignment from Pairagon GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg Alignment from Exonerate_protein2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg Alignment from Exonerate_coding2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg Alignment from GeneWise GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG actcttccttttgccaggagtgaccatcaagacctggccttctcttgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCGgtgagtagcttggtgagaagctggcggcaagctgcttcccactctggttg #### Dock8_ID5399_20 --> 0 - 1 Original Alignment GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAg gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAggtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag Alignment from CESAR GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAg gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAggtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag Alignment from Spaln_aa2Genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAGgtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag Alignment from Spaln_nt2Genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAGgtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag Alignment from Pairagon GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAGgtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag Alignment from Exonerate_protein2genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAGgtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag Alignment from Exonerate_coding2genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAGgtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag Alignment from GeneWise GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG gaacttagagattgacaatacaaatacagttggactctctctggtttcagGATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACACTGGAGCATGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTTTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAGgtacacggagaggaggcatagctagatcaggcaggcaagtgggcaggcag #### Dock8_ID5414_33 --> 2 - 2 Original Alignment ggACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACaa cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagggACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACaagtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct Alignment from CESAR ggACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACaa cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagggACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACaagtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct Alignment from Spaln_aa2Genome GGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACAA cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagGGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACAAgtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct Alignment from Spaln_nt2Genome GGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACAA cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagGGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACAAgtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct Alignment from Pairagon GGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACAA cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagGGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACAAgtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct Alignment from Exonerate_protein2genome GGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACAA cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagGGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACAAgtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct Alignment from Exonerate_coding2genome GGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACAA cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagGGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACAAgtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct Alignment from GeneWise GGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGGCAGGCTAATGAGAAGCTGGACAA cttagagtgtttcatgatcaaattcctgtaaagcgtctgctctatcccagGGACTGACCGGTTTCCAGGCATAAATGAAAATCTGAGATGGAGGAAAGAGCAGACACAGTGGCGACAGGCTAATGAGAAGCTGGACAAgtttgttgcatgccacaggctccgcactgtgttcactaacagtttgagct #### Dock8_ID5417_35 --> 0 - 0 Original Alignment GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt Alignment from CESAR GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt Alignment from Spaln_aa2Genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt Alignment from Spaln_nt2Genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt Alignment from Pairagon GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt Alignment from Exonerate_protein2genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt Alignment from Exonerate_coding2genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt Alignment from GeneWise GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG agctctactctgtgatgttgctcttccagttccttagctcttccttccagGCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAGgtaagcatgggacgcttgttttcttacccttaattaagggggtgattctt #### Dock8_ID5418_36 --> 0 - 0 Original Alignment TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga Alignment from CESAR TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga Alignment from Spaln_aa2Genome TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga Alignment from Spaln_nt2Genome TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga Alignment from Pairagon TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga Alignment from Exonerate_protein2genome TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga Alignment from Exonerate_coding2genome TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga Alignment from GeneWise TTTGGAGACCTGCTGTTCGAGGAGGAGATGGAGCAGTGTGCTGACCTGTGTCAGCGGGTGCTACATCACTGCAGCAGCAGCATGGACGTCACACGGAGCCAAGCCTGCGCCACCCTCTACCTCCTCATGCGGTTCAGCTTCGGAGCCACCAGT acttgtgaaaatccttagggatgcctctttgtccctctctgggtgtcaagTTTGGAGACCTGCTGTTTGAAGAGGAGATGGAGCAGTGTGCTGACCTATGTCAGTGGCTGCTACATCACTGCAGCAGCAGCATGGACATCACACGGAGCCAAGCCTGCGCTACCCTCTATCTTCTCATGCGGTTCAGTTTCGGAGCCACCAGTgtggggactgacagggtgtgcggcccagaaccaagagagggcagtaatga #### Dock8_ID5428_46 --> 0 - 2 Original Alignment GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcggtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac Alignment from CESAR GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcggtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac Alignment from Spaln_aa2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac Alignment from Spaln_nt2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac Alignment from Pairagon GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac Alignment from Exonerate_protein2genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac Alignment from Exonerate_coding2genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac Alignment from GeneWise GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG agtcatttcagtttcattcaaactccatatgtgtgcattgctttactcagGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCTAAGCTCTACCAACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtaagtagggaggtggtggacactggagtgtgactgcatgggggtaccac #### Dpcd_ID9491_2 --> 2 - 1 Original Alignment ggAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTg gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagggAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTggtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg Alignment from CESAR ggAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTg gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagggAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTggtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg Alignment from Spaln_aa2Genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTGgtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg Alignment from Spaln_nt2Genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTGgtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg Alignment from Pairagon GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTGgtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg Alignment from Exonerate_protein2genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTGgtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg Alignment from Exonerate_coding2genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTGgtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg Alignment from GeneWise GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gacaaggcacagaaaggcctgaggtaagtttcatccttacctctctgcagGGAAGAGGATGGTGCACTATTTGTTCCCAGACGGTAAGGAAATGGTAGAAGAATATGATGAGAAGACCAGTGAACTCCTTGgtgagtgtgagcctgggaggggtgtgtgtccgtgtgggggggtgagactg #### Dpcd_ID9501_5 --> 1 - 0 Original Alignment gTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcaggTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc Alignment from CESAR gTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcaggTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc Alignment from Spaln_aa2Genome GTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcagGTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc Alignment from Spaln_nt2Genome GTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcagGTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc Alignment from Pairagon GTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcagGTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc Alignment from Exonerate_protein2genome GTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcagGTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc Alignment from Exonerate_coding2genome GTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcagGTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc Alignment from GeneWise GTACTACAAGAAGTTCTCCATCCCTGACCTAGACAGACACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCGCACGCCAACTGCACCCTGATAATCTCT ctgtcagggtcactgtgccggttcctcatttgacttgtgcttcccttcagGTACTACAAAAAGTTCTCCATCCCTGACCTAGACAGGCACCAGCTTCCTCTAGAGGATTCTGCGTTGAGCTTTGCACATGCCAACTGCACCCTGATAATCTCTgtgagtttcgcccagccttcgtgtcaggaagatgtttctcatccctctcc #### Dpp3_ID738_15 --> 0 - 0 Original Alignment GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca Alignment from CESAR GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca Alignment from Spaln_aa2Genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca Alignment from Spaln_nt2Genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca Alignment from Pairagon GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca Alignment from Exonerate_protein2genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca Alignment from Exonerate_coding2genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca Alignment from GeneWise GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG gtccactaagcactccatatccactaaactttgtttcgattttcgtgtagGCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACTGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCTTGGGTCTGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaagtgatggtttcttgtattggcttccacaccagcccctctcctgtca #### Dpp3_ID742_11 --> 0 - 0 Original Alignment GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt Alignment from CESAR GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt Alignment from Spaln_aa2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt Alignment from Spaln_nt2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt Alignment from Pairagon GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt Alignment from Exonerate_protein2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt Alignment from Exonerate_coding2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt Alignment from GeneWise GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG gaccacagtgaggtggtggtggtcagtggattatctgttctcttctacagGATCTGTATATCCGCTGGAAGGGGCCATCCTTTGATGTGCAGGTGGGGTTACACGAGCTATTGGGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaaggaggggctacctgacctgtcccatgcataggtgaagcctttcatt #### Dpp3_ID748_5 --> 0 - 1 Original Alignment AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAg tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAggtatgatggggccctaatgtctgataacagccagctactggcccatgtgg Alignment from CESAR AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAg tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAggtatgatggggccctaatgtctgataacagccagctactggcccatgtgg Alignment from Spaln_aa2Genome AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAG tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAGgtatgatggggccctaatgtctgataacagccagctactggcccatgtgg Alignment from Spaln_nt2Genome AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAG tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAGgtatgatggggccctaatgtctgataacagccagctactggcccatgtgg Alignment from Pairagon AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAG tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAGgtatgatggggccctaatgtctgataacagccagctactggcccatgtgg Alignment from Exonerate_protein2genome AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAG tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAGgtatgatggggccctaatgtctgataacagccagctactggcccatgtgg Alignment from Exonerate_coding2genome AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAG tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAGgtatgatggggccctaatgtctgataacagccagctactggcccatgtgg Alignment from GeneWise AACCTCAGTGCATACAACACTCGGCTCTTCAAGGTCGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTGGCTTCAGTCCTCAACACAG tttctttggtctcatcacccttcaaaccccaagtctcatttgttcctcagAACCTCACCGCATACAACACTCATCTCTTCAAGGTTGTTGGCCAGGAAGGGAAGTCCCACTATGAGGTGCGGCTAGCTTCAGTCCTCAACACAGgtatgatggggccctaatgtctgataacagccagctactggcccatgtgg #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gG caagtgtttgaggggccctatttggacctatttttctttctattcattaggAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAaggtagagagccaagacatggtctgcaggctgtcctgctttttcacccaggG Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gG caagtgtttgaggggccctatttggacctatttttctttctattcattaggAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAaggtagagagccaagacatggtctgcagactaactttccttctcttgcaggG Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcaggctgtcctgctttttcacccagGG Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcaggctgtcctgctttttcacccagGG Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcaggctgtcctgctttttcacccagGG Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcaggctgtcctgctttttcacccagGG Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcaggctgtcctgctttttcacccagGG Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GG caagtgtttgaggggccctatttggacctatttttctttctattcattagGAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACCTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTTGATGGGGACAAGGGTCCTCGAAGgtagagagccaagacatggtctgcaggctgtcctgctttttcacccagGG #### Dtx4_ID3401_3 --> 1 - 1 Original Alignment gGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAg gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctataggGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAggtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat Alignment from CESAR gGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAg gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctataggGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAggtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat Alignment from Spaln_aa2Genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctatagGGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAGgtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat Alignment from Spaln_nt2Genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctatagGGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAGgtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat Alignment from Pairagon GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctatagGGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAGgtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat Alignment from Exonerate_protein2genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctatagGGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAGgtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat Alignment from Exonerate_coding2genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctatagGGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAGgtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat Alignment from GeneWise GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG gctcatttggttctgatgtcaaaggcatcctgatgatctggtgtctatagGGTACCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAGgtatgcgctcataacctggttttgactgacctaggctgaaaactcagaat #### Eef1g_ID2564_6 --> 0 - 1 Original Alignment GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATggtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc Alignment from CESAR GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATggtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc Alignment from Spaln_aa2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc Alignment from Spaln_nt2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc Alignment from Pairagon GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc Alignment from Exonerate_protein2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc Alignment from Exonerate_coding2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc Alignment from GeneWise GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG ttcatggcctttccgttattgatattgtaacagcaagttgtatttctcagGTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGTATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtgagtctggagagactgcatgtggaaagggtcagggtccagttggcgcc #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGg ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGggtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from CESAR GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGg ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGggtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Pairagon GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Exonerate_coding2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from GeneWise GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt #### Ehbp1l1_ID1218_17 --> 1 - 1 Original Alignment cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg agccctaggcgcttacttccaaattctaacccatatttctgcttacctagcATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAggtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga Alignment from CESAR cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg agccctaggcgcttacttccaaattctaacccatatttctgcttacctagcATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAggtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga Alignment from Spaln_aa2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agccctaggcgcttacttccaaattctaacccatatttctgcttacctagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAGgtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga Alignment from Spaln_nt2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agccctaggcgcttacttccaaattctaacccatatttctgcttacctagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAGgtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga Alignment from Pairagon CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agccctaggcgcttacttccaaattctaacccatatttctgcttacctagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAGgtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga Alignment from Exonerate_protein2genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agccctaggcgcttacttccaaattctaacccatatttctgcttacctagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAGgtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga Alignment from Exonerate_coding2genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agccctaggcgcttacttccaaattctaacccatatttctgcttacctagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAGgtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga Alignment from GeneWise CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agccctaggcgcttacttccaaattctaacccatatttctgcttacctagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGCGAGTTGCGGGCCATGCTGGCCATTGAAGgtaaggagtgggcctgggccagtggaggctggaggaagaacatggtcaga #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaaggtGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaaggtGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Pairagon GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from Exonerate_coding2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG tttggggatttctgctaactggagggacagtgtgacttttctcttcaaagGTGGGCCCCCTCCTACTGAAGAGTCGTCACCTAGCCTGGGGGAAGAGACAGGCCTGgtaggaatagttaggtgggcagagtggctgtggtactttccaagctggcc #### Ehbp1l1_ID1223_12 --> 0 - 0 Original Alignment GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTA---CCACCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa Alignment from CESAR GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTA---CCACCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa Alignment from Spaln_aa2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTA---CCACCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa Alignment from Spaln_nt2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTACC---ACCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa Alignment from Pairagon GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTA---CCACCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa Alignment from Exonerate_protein2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTA---CCACCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa Alignment from Exonerate_coding2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTA---CCACCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa Alignment from GeneWise GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tcgagagttgctgaaatgatgaggcttcactatgcctctttctcttacagGCTTTTGATGGCTTTGGTGCTCTCGGTGTATCTCGGCTGCTTGAGCCAGCGGACATGGTACTTCTGTCTGTACCTGACAAGCTCATCGTCATGACATACTTGTTCCAGATCCGAGCCTTCTGCACCGGGCAGGAGCTGCAACTGGTGCAACTGGAGGGTGGCGGTGGCTCTGGCACTTATCGTGTGGGCAATGCCCAGCTGAGCCTGCCTGACTGTCTGGATGTAGGAGACCTGGCGCAGCGATTAAGGGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGTGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACATGGACCTAAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGCCGCCCACCGACGGCCCTAGAGCCAGATTGTCCACAACCCCAGTGGTCCCTGCAGAGGGGCTGGTGAATGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGCGACTGAGACGGTCATCTGTCAATGGGGAGGCTGGGCCAGTACCA---CCTCGAGCACATGGCTCTTTCTCCCATGTG------------TTGCTAAAGAAGAGGCGATCGAGGCTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGACCTGCAGGGCCTGGAGCTGTGgtaagtactcctactctgctgtagcataggacagtggcaagctttcagaa #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Exonerate_protein2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from Exonerate_coding2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG ataagggctcagcggcggtggggaagagctttctcttccttccactgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCGTGGCACTGCGGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTGACCTTGCACAGGgtgggtgcccagagcttggacatgggcaggcactgcagagagcagtgtca #### Ehbp1l1_ID1233_2 --> 1 - 0 Original Alignment gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcaggCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat Alignment from CESAR gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcaggCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat Alignment from Spaln_aa2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcagGCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat Alignment from Spaln_nt2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcagGCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat Alignment from Pairagon GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcagGCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat Alignment from Exonerate_protein2genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcagGCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat Alignment from Exonerate_coding2genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcagGCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat Alignment from GeneWise GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaactggattgagcctagctaagtagcactgctgttcttttcctgcagGCAGCCTGACAAGCTGGTTGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAGgtgagtaagacagctgggggctgggtggggggagggctccatgtgggaat #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcttgatttaactgatgaagtggctagtcttgtttctcttttaacctagGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtgaggagcatcccttcatagtatggagttatgtccttaactttctcctc #### Eif3a_ID13310_20 --> 2 - 2 Original Alignment gtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCag ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttaggtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCaggtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt Alignment from CESAR gtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTC------AGAAGACCCag ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttaggtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCaggtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt Alignment from Spaln_aa2Genome GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt Alignment from Spaln_nt2Genome GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTC------AGAAGACCCAG ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt Alignment from Pairagon GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt Alignment from Exonerate_protein2genome GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt Alignment from Exonerate_coding2genome GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt Alignment from GeneWise GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCAGA------AGACCCAG ttgataaattgttaaaaaaaacaatattaatgcagtcctgtctccgttagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGCCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtgagcaatgacataactgtggtaacaggtttgtttctctcaaactctgt #### Eif3a_ID13312_18 --> 0 - 2 Original Alignment GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaa agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaagtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg Alignment from CESAR GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaa agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaagtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg Alignment from Spaln_aa2Genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAAgtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg Alignment from Spaln_nt2Genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAAgtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg Alignment from Pairagon GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAAgtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg Alignment from Exonerate_protein2genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAAgtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg Alignment from Exonerate_coding2genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAAgtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg Alignment from GeneWise GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA agttgtaactataacttttgttactatgcttgctacatctcttgtttcagGACTCCCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAAgtacgaagacttgtgggtaagagcatcttatcttaaagattagtgtctgg #### Eif3a_ID13315_15 --> 0 - 0 Original Alignment ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac Alignment from CESAR ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac Alignment from Spaln_aa2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac Alignment from Spaln_nt2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac Alignment from Pairagon ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac Alignment from Exonerate_protein2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac Alignment from Exonerate_coding2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac Alignment from GeneWise ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG atcttcctggagcgattctttggagagtaagatgtattattttaccacagATCACTACAATGCAACTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGCTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTATGAGgtaagttaggggcattgcaggctggaagttcaggcctaccagatagctac #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagATTGACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag Alignment from CESAR ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagATTGACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagATTGACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagATTGACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag Alignment from Pairagon ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagATTGACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagATTGACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagatT--GACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgcgcgcagacccacatctgcttcttgtgtttttagATTGACTATTTTGAGAGAGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtacgcttttcaattgattgtggcatcataaatcacaactaagttataag #### Eif3a_ID13320_10 --> 0 - 0 Original Alignment GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa Alignment from CESAR GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa Alignment from Spaln_aa2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa Alignment from Spaln_nt2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa Alignment from Pairagon GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa Alignment from Exonerate_protein2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa Alignment from Exonerate_coding2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa Alignment from GeneWise GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG atgtagttatgtagtagctgttgttactctatcctccctttctctatcagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaatagttataaagagcagtggcaggttagtaggtctttgagcactaaa #### Eif3a_ID13323_7 --> 1 - 0 Original Alignment aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagaATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa Alignment from CESAR aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagaATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa Alignment from Spaln_aa2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagAATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa Alignment from Spaln_nt2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagAATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa Alignment from Pairagon AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagAATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa Alignment from Exonerate_protein2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagAATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa Alignment from Exonerate_coding2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagAATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa Alignment from GeneWise AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatggtctcaatattttccccatgtggatttacagAATGTCTACTAGAGTTCTTTTGGCAACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGTTAGGTCTCCAAGCCCCACCCACACGAATTGGCCTAATTAACGATATGgtgactataagttctaagtatctttttgtagagcaaatgttttgtggaaa #### Eif3a_ID13325_5 --> 2 - 0 Original Alignment ctTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagctTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa Alignment from CESAR ctTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagctTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa Alignment from Spaln_aa2Genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagCTTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa Alignment from Spaln_nt2Genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagCTTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa Alignment from Pairagon CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagCTTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa Alignment from Exonerate_protein2genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagCTTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa Alignment from Exonerate_coding2genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagCTTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa Alignment from GeneWise CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG ttcaagttgacaaaaaataactaatccttctgcttttgttttctgaatagCTTTCAAATTTTGCCTACAGTATACTCGGAAGGCTGAGTACCGCAAGCTATGTGACAACTTGCAAATGCACTTATCACAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATTAGCATGGAATTATGGCAGgtaggtctaactagtagcctaatatcacatcactgctttcctcttcttaa #### Eif3a_ID13328_2 --> 2 - 0 Original Alignment aaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagaaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc Alignment from CESAR aaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagaaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc Alignment from Spaln_aa2Genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc Alignment from Spaln_nt2Genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc Alignment from Pairagon AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc Alignment from Exonerate_protein2genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc Alignment from Exonerate_coding2genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc Alignment from GeneWise AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tttttatatagcatgtacagcgaatttacctctctctgaaccccaaacagAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAGgtgagcactttgtttcccaagtgcttttcatactaataaaaagtaaggcc #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagcAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACacgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagcAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACacgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC ctcattctgccttcctgggagctttgggtccctgcctcctcctccctaagCAGCATCACAGTCCCTCCAGGGCTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTCTCAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAACCTCTTCAGCGTTCGGACACgtaagttagctagtatggatgggaaatctgagcaacaggcttgacttttc #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGgtgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGgtgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct #### Eml3_ID2521_20 --> 2 - 1 Original Alignment ggGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATg ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagggGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATggtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa Alignment from CESAR ggGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATg ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagggGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATggtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa Alignment from Spaln_aa2Genome GGGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATG ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagGGGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATGgtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa Alignment from Spaln_nt2Genome GGGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATG ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagGGGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATGgtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa Alignment from Pairagon GGGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATG ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagGGGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATGgtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa Alignment from Exonerate_protein2genome GGGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATG ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagGGGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATGgtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa Alignment from Exonerate_coding2genome GGGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATG ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagGGGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATGgtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa Alignment from GeneWise GGGATGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAGAGACCGGGAGTGGGCTACCTATACCTGTGTGCTGGGCTTCCACGTCTATG ctagtgagggaagaatgatggctgtggcaggggctgctcttctcctctagGGGACGTGGCTGGAGGCTGCAAACTGCTGAGGAACCGTTATGAGAGCAGAGACCGGGAGTGGGCTACCTACACCTGTGTGCTGGGCTTTCATGTCTATGgtatcccagggtctggaatctgttaggagggctgggaaaacaagcaaaaa #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcaggtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from CESAR gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcaggtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Pairagon GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from GeneWise GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAGGCG---------------------CCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGGCAAGTCCTCAGAAGACCATTGGGCCCAGgtgtgggtaggtttggtgccc #### Eno4_ID12829_2 --> 0 - 0 Original Alignment GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac Alignment from CESAR GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac Alignment from Spaln_aa2Genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac Alignment from Spaln_nt2Genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac Alignment from Pairagon GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac Alignment from Exonerate_protein2genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac Alignment from Exonerate_coding2genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac Alignment from GeneWise ---AACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG gaaaaattcaatgtgactgactgcttctacttattcttctcttcttgtagGCAAACTACTTTTCTAAACTTGCAAAGCCTCCCTCCATATGTAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTTTACAGGTGGAAATCTCCTGCACCATTCAAAACTTCCCCAAGgtgactggtagttaaatttgttcatttatgggtcctgcccctctctgtac #### Eno4_ID12831_3 --> 0 - 2 Original Alignment TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCag tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTaggtaagtctttcgactgcaaaataataatggccacgcataaactccccagt Alignment from CESAR TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCag tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTaggtaagtctttcgactgcaaaataataatggccacgcataaactccccagt Alignment from Spaln_aa2Genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTAGgtaagtctttcgactgcaaaataataatggccacgcataaactccccagt Alignment from Spaln_nt2Genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTAGgtaagtctttcgactgcaaaataataatggccacgcataaactccccagt Alignment from Pairagon TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTAGgtaagtctttcgactgcaaaataataatggccacgcataaactccccagt Alignment from Exonerate_protein2genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTAGgtaagtctttcgactgcaaaataataatggccacgcataaactccccagt Alignment from Exonerate_coding2genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTAGgtaagtctttcgactgcaaaataataatggccacgcataaactccccagt Alignment from GeneWise TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG tctcctgggagaggcagagataatgcagcactacccctgccctgccccagTACATCTGTGCTGTGGCGATCCCTACACACTTTGAAGTTGTGGAGAATGCTTTGCCAGAGGCGTTGGATGTAGAAGACTCAGAAAGGGCCCAGGCCGTGAACACAGCAGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCAAACCAGGCAGAGGTGGACCACAGGATTAGgtaagtctttcgactgcaaaataataatggccacgcataaactccccagt #### Eno4_ID12835_7 --> 0 - 0 Original Alignment AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAGTTGCTT---CAAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca Alignment from CESAR AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAGTTGCTT---CAAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca Alignment from Spaln_aa2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAG---TTGCTTCAAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca Alignment from Spaln_nt2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAGTTGCTTC---AAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca Alignment from Pairagon AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAGTTGCTTC---AAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca Alignment from Exonerate_protein2genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAG---TTGCTTCAAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca Alignment from Exonerate_coding2genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAG---TTGCTTCAAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca Alignment from GeneWise AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tttgaaacctaaaattgtacatttgtccttcttgtctccccttcttccagAGTGTCAAGTTGCTT---CAAATTCAGAAACAAGTTAACAGAGCGATGGAGACAgtgagtaaagggaggctgtggtgattgctggccctcaaatccagcttgca #### Entpd7_ID8792_2 --> 1 - 2 Original Alignment gATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGag taatttatgtagaaattataaggacttacagctctgcccttgtcttgcaggATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGaggtagggaagctttcaatcacttggcccagatcggttttttagttacaata Alignment from CESAR gATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGag taatttatgtagaaattataaggacttacagctctgcccttgtcttgcaggATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGaggtagggaagctttcaatcacttggcccagatcggttttttagttacaata Alignment from Spaln_aa2Genome GATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG taatttatgtagaaattataaggacttacagctctgcccttgtcttgcagGATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGAGgtagggaagctttcaatcacttggcccagatcggttttttagttacaata Alignment from Spaln_nt2Genome GATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG taatttatgtagaaattataaggacttacagctctgcccttgtcttgcagGATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGAGgtagggaagctttcaatcacttggcccagatcggttttttagttacaata Alignment from Pairagon GATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG taatttatgtagaaattataaggacttacagctctgcccttgtcttgcagGATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGAGgtagggaagctttcaatcacttggcccagatcggttttttagttacaata Alignment from Exonerate_protein2genome GCTAGGATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG taatttatgtagaaattataaggacttacagctctgcccttgtctTGCAGGATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGAGgtagggaagctttcaatcacttggcccagatcggttttttagttacaata Alignment from Exonerate_coding2genome GCTAGGATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG taatttatgtagaaattataaggacttacagctctgcccttgtctTGCAGGATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGAGgtagggaagctttcaatcacttggcccagatcggttttttagttacaata Alignment from GeneWise GCTAGGATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG taatttatgtagaaattataaggacttacagctctgcccttgtctTGCAGGATCAGTTTTTCCTACTTATGCCCGGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCATTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCATTACCACGAGACAGGCAGTATGAGAGgtagggaagctttcaatcacttggcccagatcggttttttagttacaata #### Entpd7_ID8795_4 --> 2 - 2 Original Alignment ggATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGag tgtatctatatattttttgttattgcttactttaaacaccttttctaaagggATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGaggtactgttccggactttcactggacttagggaagtgagtcccctgcagcc Alignment from CESAR ggATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGag tgtatctatatattttttgttattgcttactttaaacaccttttctaaagggATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGaggtactgttccggactttcactggacttagggaagtgagtcccctgcagcc Alignment from Spaln_aa2Genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatctatatattttttgttattgcttactttaaacaccttttctaaagGGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAGgtactgttccggactttcactggacttagggaagtgagtcccctgcagcc Alignment from Spaln_nt2Genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatctatatattttttgttattgcttactttaaacaccttttctaaagGGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAGgtactgttccggactttcactggacttagggaagtgagtcccctgcagcc Alignment from Pairagon GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatctatatattttttgttattgcttactttaaacaccttttctaaagGGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAGgtactgttccggactttcactggacttagggaagtgagtcccctgcagcc Alignment from Exonerate_protein2genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatctatatattttttgttattgcttactttaaacaccttttctaaagGGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAGgtactgttccggactttcactggacttagggaagtgagtcccctgcagcc Alignment from Exonerate_coding2genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatctatatattttttgttattgcttactttaaacaccttttctaaagGGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAGgtactgttccggactttcactggacttagggaagtgagtcccctgcagcc Alignment from GeneWise GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatctatatattttttgttattgcttactttaaacaccttttctaaagGGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAGgtactgttccggactttcactggacttagggaagtgagtcccctgcagcc #### Entpd7_ID8797_6 --> 2 - 1 Original Alignment gaGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATg tctgatccatcaccagaatttatagagaccatcttcttttcccttttcaggaGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATggtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt Alignment from CESAR gaGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATg tctgatccatcaccagaatttatagagaccatcttcttttcccttttcaggaGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATggtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt Alignment from Spaln_aa2Genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG tctgatccatcaccagaatttatagagaccatcttcttttcccttttcagGAGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt Alignment from Spaln_nt2Genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG tctgatccatcaccagaatttatagagaccatcttcttttcccttttcagGAGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt Alignment from Pairagon GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG tctgatccatcaccagaatttatagagaccatcttcttttcccttttcagGAGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt Alignment from Exonerate_protein2genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG tctgatccatcaccagaatttatagagaccatcttcttttcccttttcagGAGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt Alignment from Exonerate_coding2genome GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG tctgatccatcaccagaatttatagagaccatcttcttttcccttttcagGAGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt Alignment from GeneWise GAGTTTATGCATGGATCGGAATCAACTTTGTTCTGGGAAGATTTGACCATGAAGATG tctgatccatcaccagaatttatagagaccatcttcttttcccttttcagGAGTTTATGCATGGATCGGAATCAACTTTGTCCTGGGAAGATTCGACCATGAAGATGgtgagctctgccttatgatggtcatcaagggttgacatttattgacaatt #### Erlin1_ID8899_5 --> 2 - 1 Original Alignment tgTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTg tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagtgTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTggtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg Alignment from CESAR tgTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTg tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagtgTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTggtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg Alignment from Spaln_aa2Genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagTGTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTGgtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg Alignment from Spaln_nt2Genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagTGTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTGgtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg Alignment from Pairagon TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagTGTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTGgtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg Alignment from Exonerate_protein2genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagTGTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTGgtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg Alignment from Exonerate_coding2genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagTGTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTGgtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg Alignment from GeneWise TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG tagttgggtcattgttgggtgaaacaaatagactccattctcttgggcagTGTTCGACATTGTGAGGAACTATACTGCAGGCTACGACAAGACTTTAATCTTCAATAAAATCCATCATGAACTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAGTTGTTTGgtgagagttaatttgttttaaatatatgtatagagattagtaggccttgg #### Erlin1_ID8900_4 --> 1 - 1 Original Alignment tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagtGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAggtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa Alignment from CESAR tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagtGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAggtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa Alignment from Spaln_aa2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagTGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAGgtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa Alignment from Spaln_nt2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagTGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAGgtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa Alignment from Pairagon TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagTGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAGgtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa Alignment from Exonerate_protein2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagTGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAGgtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa Alignment from Exonerate_coding2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagTGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAGgtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa Alignment from GeneWise TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG tattttaattgtggctcagactcacacttcctcttgtgcctgccacatagTGGCGGAGTCATGATCTATATTGACCGAATACAAGTGGTTAATATGTTGGCTCCTTATGCAGgtaggtttaacaatacgtgtgaattcattcagtcatgaacgggggtgcaa #### Ermp1_ID6316_14 --> 2 - 0 Original Alignment gaCCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccaggaCCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt Alignment from CESAR gaCCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccaggaCCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt Alignment from Spaln_aa2Genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccagGACCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt Alignment from Spaln_nt2Genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccagGACCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt Alignment from Pairagon GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccagGACCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt Alignment from Exonerate_protein2genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccagGACCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt Alignment from Exonerate_coding2genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccagGACCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt Alignment from GeneWise GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG gaacctaacagtatttttactgcacattgtccatccttccgtcggtccagGACCAAGCCATATGTCTTTTTATGTTCGAACCCACAAAGGATCAACCCTTTCCCAGTGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAGgtaatccttgccaggcttctagacagtatgctacaaccttggaggccagt #### Ermp1_ID6318_12 --> 0 - 2 Original Alignment CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCag gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCaggtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc Alignment from CESAR CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCag gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCaggtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc Alignment from Spaln_aa2Genome CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAGgtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc Alignment from Spaln_nt2Genome CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAGgtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc Alignment from Pairagon CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAGgtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc Alignment from Exonerate_protein2genome CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAGgtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc Alignment from Exonerate_coding2genome CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAGgtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc Alignment from GeneWise CACGTGAGTAGAACTTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGGTTTGATTATACTGGAATGTCTCACGTAACACCTCACATTCCTGAGATCAACGACACAATCCGAGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAG gtgtggatgagctagctgaatggttttcatagcggctgcttcttttccagCATGTGAGTAGAACCTTTCATAACTTAGAAGGAAGCGTAGTAAAAAGAGACTCTGGAATATGGATCAATGGATTTGATTATACTGGAATGTCTCATGTAACACCTCACATTCCTGAGATCAACGACACAATCCGGGCTCACTGTGAGGAGGATGCCCCACTCTGTGGCTTCCCTTGGTATCTTCCAGTGCACTTCCTGATCAGgtaagttcatactttttcttaaggtgggatttagtttccaaattctaacc #### Exoc6_ID7364_3 --> 0 - 0 Original Alignment GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcagGTGCAGGTTACTGATACTAAT---CAGTTTCAAGATGCTGGAAAAGAGgtaaaaaagtgagggtggatggcataggctccctccctccctccattcat Alignment from CESAR GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcagGTGCAGGTTACTGATACTAATCAG---TTTCAAGATGCTGGAAAAGAGgtaaaaaagtgagggtggatggcataggctccctccctccctccattcat Alignment from Spaln_aa2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcagGTGCAGGTTACTGATACTAAT---CAGTTTCAAGATGCTGGAAAAGAGgtaaaaaagtgagggtggatggcataggctccctccctccctccattcat Alignment from Spaln_nt2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcagGTGCAGGTTACTGATACTAATC---AGTTTCAAGATGCTGGAAAAGAGgtaaaaaagtgagggtggatggcataggctccctccctccctccattcat Alignment from Pairagon GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcagGTGCAGGTTACTGATACTAATC---AGTTTCAAGATGCTGGAAAAGAGgtaaaaaagtgagggtggatggcataggctccctccctccctccattcat Alignment from Exonerate_protein2genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcagGTGCAGGTTACTGATACTAAT---CAGTTTCAAGATGCTGGAAAAGAGgtaaaaaagtgagggtggatggcataggctccctccctccctccattcat Alignment from Exonerate_coding2genome tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcaggtgcaggttactgatactaatcagtttcaagatgctggaaaagaggtaaaaaagtgagggtggatggcataggctccctccctccctccattcat Alignment from GeneWise GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagggcagctctatacatgccgcgtgtggtctccttgcgcagGTGCAGGTTACTGATACTAATCAG---TTTCAAGATGCTGGAAAAGAGgtaaaaaagtgagggtggatggcataggctccctccctccctccattcat #### Exoc6_ID7369_8 --> 0 - 0 Original Alignment GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta Alignment from CESAR GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta Alignment from Spaln_aa2Genome GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta Alignment from Spaln_nt2Genome GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta Alignment from Pairagon GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta Alignment from Exonerate_protein2genome GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta Alignment from Exonerate_coding2genome GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta Alignment from GeneWise GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTG gtattatccaatagtttaacctatcactgcgtgccatttccttcccacagGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGgtgagcatatttattggttctgaccttgtgtaagccagggtgcttatgta #### Exoc6_ID7370_9 --> 0 - 0 Original Alignment GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct Alignment from CESAR GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct Alignment from Spaln_aa2Genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct Alignment from Spaln_nt2Genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct Alignment from Pairagon GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct Alignment from Exonerate_protein2genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct Alignment from Exonerate_coding2genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct Alignment from GeneWise GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaggcgggaggggccatcaccatgccttcctatttttattctggcagGGTGATGAAGAAACATTCGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTACTACAGCCGCATTCGAGTGTGgtgagtgtggagtcctgtggcctgcatggtccttccacccggggctggct #### Exoc6_ID7372_11 --> 1 - 0 Original Alignment gTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttataggTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata Alignment from CESAR gTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttataggTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata Alignment from Spaln_aa2Genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttatagGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata Alignment from Spaln_nt2Genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttatagGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata Alignment from Pairagon GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttatagGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata Alignment from Exonerate_protein2genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttatagGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata Alignment from Exonerate_coding2genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttatagGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata Alignment from GeneWise GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA ctttcttgcttacccttagacccatgcttggtttgccttaacttttatagGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGCTTGGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTTTCAAAGATAATTGCTGTCCTCAGAGCTCACTCAgtaacccagaccagatatgctcatcattataatttcatttgacttgtata #### Exoc6_ID7375_13 --> 0 - 2 Original Alignment GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCag gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCaggtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt Alignment from CESAR GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCag gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCaggtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt Alignment from Spaln_aa2Genome GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAG gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCAGgtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt Alignment from Spaln_nt2Genome GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAG gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCAGgtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt Alignment from Pairagon GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAG gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCAGgtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt Alignment from Exonerate_protein2genome GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAG gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCAGgtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt Alignment from Exonerate_coding2genome GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAG gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCAGgtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt Alignment from GeneWise GGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAG gcggacatttaaaacacacttggctcactcatccactcatctctccacagGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAATGAAACACTGCTGAAGAAGTGGGCTGGTATCTTCAGgtaaattagatggtgtcttagtataatgaaatgtaagcccttaactagtt #### Exoc6_ID7379_16 --> 1 - 0 Original Alignment cTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagcTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg Alignment from CESAR cTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagcTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg Alignment from Spaln_aa2Genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg Alignment from Spaln_nt2Genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg Alignment from Pairagon CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg Alignment from Exonerate_protein2genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg Alignment from Exonerate_coding2genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg Alignment from GeneWise CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ggagtgatcttactcatgaaaggctttttgttttgtgttttcttccccagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtaaggagaaataataaccaaatgttttactatgaaagaattggggctgg #### Exosc1_ID8332_7 --> 0 - 1 Original Alignment ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGggtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag Alignment from CESAR ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGggtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag Alignment from Spaln_aa2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGGgtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag Alignment from Spaln_nt2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGGgtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag Alignment from Pairagon ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGGgtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag Alignment from Exonerate_protein2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGGgtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag Alignment from Exonerate_coding2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGGgtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag Alignment from GeneWise ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aaacaagtatcaaaggaggtgaatttccgaaatatccactcttcccttagATCTCCCTAGGTGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCGGgtattgtcttgctctcaagtccgtcatcctgggaaccatggttatctaag #### Exosc1_ID8334_5 --> 1 - 0 Original Alignment cAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagcAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt Alignment from CESAR cAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagcAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt Alignment from Spaln_aa2Genome CAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagCAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt Alignment from Spaln_nt2Genome CAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagCAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt Alignment from Pairagon CAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagCAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt Alignment from Exonerate_protein2genome CAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagCAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt Alignment from Exonerate_coding2genome CAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagCAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt Alignment from GeneWise CAAAGAAGATATCCGAGCAACTGAAAAAGACAAG aacgtattcttaatttctttgtttttagtaaccacccttcccgcccctagCAAAGAAGATATCCGAGCAACTGAAAAAGACAAAgttggtgatcagtggtttgagcatatgtttttgtgggggtctaaaggttt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gggcctgagccaggccgtggctgccctgttgttttcctttttttgcccagGCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCAACATGGAATTACCTGCTGCATCATTTTGTGATTGGCCACCTGAAAgtgagcgagattattgtgttcccccaagccccagtcattcatggttctca #### Fads1_ID2693_7 --> 2 - 0 Original Alignment tcGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagtcGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc Alignment from CESAR tcGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagtcGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc Alignment from Spaln_aa2Genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagTCGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc Alignment from Spaln_nt2Genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagTCGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc Alignment from Pairagon TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagTCGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc Alignment from Exonerate_protein2genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagTCGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc Alignment from Exonerate_coding2genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagTCGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc Alignment from GeneWise TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG ccctttctaacccctgcttgctcactccgctctggattccctctgaacagTCGGACCCCCAGCTTTGTTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTGgtaagcatccttagcctgagagccacatgtaccagattctccataactgc #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga #### Fads2_ID2673_11 --> 1 - 2 Original Alignment cCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGag tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagcCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGaggtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc Alignment from CESAR cCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGag tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagcCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGaggtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc Alignment from Spaln_aa2Genome CCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGAG tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGAGgtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc Alignment from Spaln_nt2Genome CCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGAG tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGAGgtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc Alignment from Pairagon CCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGAG tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGAGgtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc Alignment from Exonerate_protein2genome CCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGAG tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGAGgtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc Alignment from Exonerate_coding2genome CCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGAG tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGAGgtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc Alignment from GeneWise CCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGACATTGTGAG tggagaacgtggtcttgggttgcacttaaccatccctgcttcctttacagCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGTGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATTGACATTGTGAGgtaagtggtgagctccacaagggcttaaacgtcagaggcctgaaaggagc #### Fads2_ID2677_7 --> 2 - 0 Original Alignment tcGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagttGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt Alignment from CESAR tcGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagttGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt Alignment from Spaln_aa2Genome TCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagTTGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt Alignment from Spaln_nt2Genome TCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagTTGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt Alignment from Pairagon TCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagTTGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt Alignment from Exonerate_protein2genome TCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagTTGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt Alignment from Exonerate_coding2genome TCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagTTGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt Alignment from GeneWise TCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTG tcatctaggctcccaggctccactcagaaattattgtttttctttcatagTTGGACCACCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATTAGCCGTAGGGACTGGGTGgtcagccaggaagtgacagctcgtggtggggtagtatgactagggcactt #### Fads2_ID2682_2 --> 0 - 0 Original Alignment GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg Alignment from CESAR GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg Alignment from Spaln_aa2Genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg Alignment from Spaln_nt2Genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg Alignment from Pairagon GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg Alignment from Exonerate_protein2genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg Alignment from Exonerate_coding2genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg Alignment from GeneWise GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC ccagcagaggtttgaggttcagccttaccaccagccagtttcacttgcagGACGCCTTCCGTGCCTTCCATCTGGACTTGGACTTTGTGGGCAAGTTCTTGAAGCCCCTGCTAATTGGTGAGCTAGCCCCAGAAGAGCCCAGCCTGGACCGTGGCAAAAGTgtaagtggaacttgttatttctgcattttctccatctatagaatataatg #### Fads3_ID2659_2 --> 0 - 0 Original Alignment GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc Alignment from CESAR GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc Alignment from Spaln_aa2Genome GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc Alignment from Spaln_nt2Genome GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc Alignment from Pairagon GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc Alignment from Exonerate_protein2genome GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc Alignment from Exonerate_coding2genome GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc Alignment from GeneWise GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAGAAT gctccctgagcgctacatgtactgtccaagtgccctcttgtgttttgtagGACGCCTTCCATGCCTTCCACCAAGATCTCCATTTTTTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAAAATgtgagaggaccggaacaagatgctactgtcaacaggcaatgtccccaagc #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG tgtcctgctgcaaacatttgcatatgtttttgaaattttttcttgtttagTGCCCTCCAGGAATGAAGCAGCAGGTTTTAGTGTTCTATACCAAGCTTCTGGAACGAATCCGGCAGCCACTGCTTCCACACATCAACGTGCACAGGCCTGTGCAGgtacgtattctccctaagaataaaaatagtggagaaaactatcgtaacat #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagcTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagcTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagCTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagCTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagCTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagCTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagCTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctcaccttgcagaactagccatgctgtatcacctcttctacttggagtagCTCTGAGATGGGAATTCTGACCTCGACCGCCCTGCTACACCGCATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtgagccatgttcaactgcgctggacttatagtcttggaaatgttggttt #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag aaaatatcataataaatggtgttctctacattttcctctttcttgaacagaGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag aaaatatcataataaatggtgttctctacattttcctctttcttgaacagaGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACaggtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG aaaatatcataataaatggtgttctctacattttcctctttcttgaacagAGATCTAGAGGAAGATCCATTATTTACTGACATTTCACCAGACAACACTCTGCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACAGAAGTGCATAAAGTGGTCAACAGgtatgtcacatgattgtggtgagtgtgtcatgcatttgagctgggctgct #### Fam160b1_ID12363_14 --> 0 - 0 Original Alignment TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg Alignment from CESAR TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg Alignment from Spaln_aa2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg Alignment from Spaln_nt2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg Alignment from Pairagon TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg Alignment from Exonerate_protein2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg Alignment from Exonerate_coding2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg Alignment from GeneWise TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttgaatatcctatggatttattttacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTAGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAGgtaagtcattggaagggtccaattttcatcgttttgtggttagccccagg #### Fam178a_ID9221_4 --> 0 - 1 Original Alignment GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAg tcatattctttacttctcaaaattccattccatcccctggtccttgacagGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCTGACTCATGGGAACTTTCTggtatctagcatcagacttaaacatagaatttctaagtgagtgcgtatctt Alignment from CESAR GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAg tcatattctttacttctcaaaattccattccatcccctggtccttgacagGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCTGACTCATGGGAACTTTCTggtatctagcatcagacttaaacatagaatttctaagtgagtgcgtatctt Alignment from Spaln_aa2Genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tcatattctttacttctcaaaattccattccatcccctggtccttgacagGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCTGACTCATGGGAACTTTCTGgtatctagcatcagacttaaacatagaatttctaagtgagtgcgtatctt Alignment from Spaln_nt2Genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tcatattctttacttctcaaaattccattccatcccctggtccttgacagGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCTGACTCATGGGAACTTTCTGgtatctagcatcagacttaaacatagaatttctaagtgagtgcgtatctt Alignment from Pairagon GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tcatattctttacttctcaaaattccattccatcccctggtccttgacagGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCTGACTCATGGGAACTTTCTGgtatctagcatcagacttaaacatagaatttctaagtgagtgcgtatctt Alignment from Exonerate_protein2genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tcatattctttacttctcaaaattccattccatcccctggtccttgacagGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCTGACTCATGGGAACTTTCTGgtatctagcatcagacttaaacatagaatttctaagtgagtgcgtatctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tcatattctttacttctcaaaattccattccatcccctggtccttgacagGAAAATGGACATCTCTCAAGAAAAAGATCATCTTCTGACTCATGGGAACTTTCTGgtatctagcatcagacttaaacatagaatttctaagtgagtgcgtatctt #### Fam178a_ID9227_8 --> 1 - 2 Original Alignment gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aaattatgtgcctcctaactcttagatatgacctcttcctctcgctgcaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaagtgaggaaatcacaaatgtttgaatttttttccctgtttgttctaagggc Alignment from CESAR gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aaattatgtgcctcctaactcttagatatgacctcttcctctcgctgcaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaagtgaggaaatcacaaatgtttgaatttttttccctgtttgttctaagggc Alignment from Spaln_aa2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aaattatgtgcctcctaactcttagatatgacctcttcctctcgctgcagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgaggaaatcacaaatgtttgaatttttttccctgtttgttctaagggc Alignment from Spaln_nt2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aaattatgtgcctcctaactcttagatatgacctcttcctctcgctgcagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgaggaaatcacaaatgtttgaatttttttccctgtttgttctaagggc Alignment from Pairagon GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aaattatgtgcctcctaactcttagatatgacctcttcctctcgctgcagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgaggaaatcacaaatgtttgaatttttttccctgtttgttctaagggc Alignment from Exonerate_protein2genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aaattatgtgcctcctaactcttagatatgacctcttcctctcgctgcagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgaggaaatcacaaatgtttgaatttttttccctgtttgttctaagggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aaattatgtgcctcctaactcttagatatgacctcttcctctcgctgcagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgaggaaatcacaaatgtttgaatttttttccctgtttgttctaagggc #### Fam178a_ID9236_17 --> 0 - 0 Original Alignment GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG atggtgttcatactgccatcttcatgggatcactcttctgtttgctctagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtatgaagtatttagtattattgtaaattggtgttcccatttcctatgtg Alignment from CESAR GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG atggtgttcatactgccatcttcatgggatcactcttctgtttgctctagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtatgaagtatttagtattattgtaaattggtgttcccatttcctatgtg Alignment from Spaln_aa2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG atggtgttcatactgccatcttcatgggatcactcttctgtttgctctagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtatgaagtatttagtattattgtaaattggtgttcccatttcctatgtg Alignment from Spaln_nt2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG atggtgttcatactgccatcttcatgggatcactcttctgtttgctctagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtatgaagtatttagtattattgtaaattggtgttcccatttcctatgtg Alignment from Pairagon GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG atggtgttcatactgccatcttcatgggatcactcttctgtttgctctagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtatgaagtatttagtattattgtaaattggtgttcccatttcctatgtg Alignment from Exonerate_protein2genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG atggtgttcatactgccatcttcatgggatcactcttctgtttgctctagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtatgaagtatttagtattattgtaaattggtgttcccatttcctatgtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG atggtgttcatactgccatcttcatgggatcactcttctgtttgctctagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtatgaagtatttagtattattgtaaattggtgttcccatttcctatgtg #### Fas_ID6923_4 --> 2 - 2 Original Alignment gtTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCtc ttattgtcaaccagctactacaattgaaatgctttctatttctttttaaggtCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCtcgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc Alignment from CESAR gtTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCtc ttattgtcaaccagctactacaattgaaatgctttctatttctttttaaggtCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCtcgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc Alignment from Spaln_aa2Genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC ttattgtcaaccagctactacaattgaaatgctttctatttctttttaagGTCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCTCgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc Alignment from Spaln_nt2Genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC ttattgtcaaccagctactacaattgaaatgctttctatttctttttaagGTCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCTCgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc Alignment from Pairagon GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC ttattgtcaaccagctactacaattgaaatgctttctatttctttttaagGTCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCTCgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc Alignment from Exonerate_protein2genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC ttattgtcaaccagctactacaattgaaatgctttctatttctttttaagGTCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCTCgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc Alignment from Exonerate_coding2genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC ttattgtcaaccagctactacaattgaaatgctttctatttctttttaagGTCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCTCgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc Alignment from GeneWise GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC ttattgtcaaccagctactacaattgaaatgctttctatttctttttaagGTCTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACTAAGTGCAAATGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGCGAACACTGTGTTCGCTGTGCCTCgtgagttttaacattcagtgcctaagacactggctatgagatggaacatc #### Fas_ID6924_5 --> 1 - 1 Original Alignment gTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAa tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacaggTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAagtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg Alignment from CESAR gTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAa tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacaggTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAagtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg Alignment from Spaln_aa2Genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacagGTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAAgtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg Alignment from Spaln_nt2Genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacagGTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAAgtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg Alignment from Pairagon GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacagGTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAAgtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg Alignment from Exonerate_protein2genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacagGTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAAgtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg Alignment from Exonerate_coding2genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacagGTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAAgtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg Alignment from GeneWise GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA tacattggaaaaatggagaagaaatctaatgttgtctgcttttcccacagGTGTGAGCATGGAACCCTTGAGCCATGCACAGCAACCAGCAATACAAATTGCAGGAAACAAAgtaagtctttcttgcttccttcctcacatgtcaaaatatagagatcattg #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAggtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAggtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacaggtATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacaggtATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacagGTATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacagGTATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacagGTATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacagGTATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa Alignment from Exonerate_coding2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacagGTATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa Alignment from GeneWise GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG aggtgtgactttgctacttaacctgatcccaacctctctgtcccacacagGTATAGTTCATGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGCCAGACTCCCAAGgtaggtgattggtgtttgaactttgttactttctaccacagccaagtgaa #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg Alignment from GeneWise GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG tttataaatctcacgagtcagggagtgtcgttcccctttatctccctcagGAAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAGgtaccttcagactccctcattcctgggttcatctatccatcccgggctcg #### Fibp_ID1007_4 --> 0 - 2 Original Alignment TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCag cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCaggtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg Alignment from CESAR TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCag cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCaggtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg Alignment from Spaln_aa2Genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg Alignment from Spaln_nt2Genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg Alignment from Pairagon TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg Alignment from Exonerate_protein2genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg Alignment from Exonerate_coding2genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg Alignment from GeneWise TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG cagctagcacatggacgtctcctgaccattctccacattccacacctcagTATGACAACTTTAAACGAATCTTCAAGGTGGTGGAGGAAATGAGGGGCTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtacatgtcactgcctcctccctgactgtttagccaacaaatgagagctg #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccaagaataaaacactcttagtttagagggctcacaggacttcttctcagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtgacctgccctgtgcagacccttctgcctaaagtgtcaagaggctcggg #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta #### Fra10ac1_ID7558_11 --> 2 - 1 Original Alignment gaCATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACa gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcaggaCATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACagtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc Alignment from CESAR gaCATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACa gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcaggaCATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACagtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc Alignment from Spaln_aa2Genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcagGACATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACAgtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc Alignment from Spaln_nt2Genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcagGACATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACAgtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc Alignment from Pairagon GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcagGACATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACAgtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc Alignment from Exonerate_protein2genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcagGACATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACAgtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc Alignment from Exonerate_coding2genome GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcagGACATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACAgtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc Alignment from GeneWise GACATTCATCCTCAAAGAAGTCAGAAGATTCTAGAAACA gccaataccatcttaaaatgatgcttggacctcccttctcggtccctcagGACATTCATCCTCAAAGAAGTCAGAAGATTCTAGGAACAgtaagaactaagaatttatcattaggaatgtatagagacaaagcacttgc #### Fra10ac1_ID7565_5 --> 1 - 2 Original Alignment gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg aaatttgactaattttaatcttatattactcacctgcccatttctttcaggGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTtggtacgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg Alignment from CESAR gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg aaatttgactaattttaatcttatattactcacctgcccatttctttcaggGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTtggtacgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg Alignment from Spaln_aa2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaatttgactaattttaatcttatattactcacctgcccatttctttcagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtacgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg Alignment from Spaln_nt2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaatttgactaattttaatcttatattactcacctgcccatttctttcagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtacgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg Alignment from Pairagon GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaatttgactaattttaatcttatattactcacctgcccatttctttcagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtacgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg Alignment from Exonerate_protein2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaatttgactaattttaatcttatattactcacctgcccatttctttcagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtacgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg Alignment from Exonerate_coding2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaatttgactaattttaatcttatattactcacctgcccatttctttcagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtacgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg Alignment from GeneWise GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTGGGAG aaatttgactaattttaatcttatattactcacctgcccatttctttcagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGGTACgtttacttgattatttatttgtagtgggtgtgtgtgtgtgcgtgtg #### Frmd8_ID1286_2 --> 2 - 1 Original Alignment caGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGg gggaaatactgattgaacctcacccaactgctttgttggtcccattacagcaGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAggtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt Alignment from CESAR caGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGg gggaaatactgattgaacctcacccaactgctttgttggtcccattacagcaGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAggtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt Alignment from Spaln_aa2Genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG gggaaatactgattgaacctcacccaactgctttgttggtcccattacagCAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAGgtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt Alignment from Spaln_nt2Genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG gggaaatactgattgaacctcacccaactgctttgttggtcccattacagCAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAGgtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt Alignment from Pairagon CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG gggaaatactgattgaacctcacccaactgctttgttggtcccattacagCAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAGgtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt Alignment from Exonerate_protein2genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG gggaaatactgattgaacctcacccaactgctttgttggtcccattacagCAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAGgtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt Alignment from Exonerate_coding2genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG gggaaatactgattgaacctcacccaactgctttgttggtcccattacagCAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAGgtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt Alignment from GeneWise CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG gggaaatactgattgaacctcacccaactgctttgttggtcccattacagCAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCACTGGCTGTGGAGAATTTGTCTTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGATGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCCCCCCTCTCCTAGgtaagctatggcagcagggcgaacattctggggaggtgaggacacgacgt #### Fxn_ID5299_2 --> 0 - 2 Original Alignment CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAaggtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc Alignment from CESAR CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAaggtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc Alignment from Spaln_aa2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAAGgtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc Alignment from Spaln_nt2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAAGgtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc Alignment from Pairagon CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAAGgtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc Alignment from Exonerate_protein2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAAGgtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc Alignment from Exonerate_coding2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAAGgtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc Alignment from GeneWise CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG acagagtagacgaggacgtggtaattagcctgttggcaccccacccgcagCATTTGAACCTCCACTACCTACAGATTTTGAACATCAAAAAGCAGAGTGTCTGCGTGGTGCATTTGAGGAACTTGGGTACATTGGACAACCCAAGgtaagatgaaaccaccttctacctcaggcatgcattccacttcctctctc #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct Alignment from Exonerate_protein2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct Alignment from Exonerate_coding2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct Alignment from GeneWise ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttaatgcaagttggcactgaaaagcctactcttacccctttgcgttgcagACACTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGATATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaagcaatattcctatttctgacaagcaagtgctcttaagttttgctct #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagggACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagggACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga #### Ganab_ID2484_23 --> 0 - 2 Original Alignment GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTaggtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct Alignment from CESAR GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTaggtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct Alignment from Spaln_aa2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct Alignment from Spaln_nt2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct Alignment from Pairagon GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct Alignment from Exonerate_protein2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct Alignment from Exonerate_coding2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct Alignment from GeneWise GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG agtgaaggcaccccctctttggcttaagttatattttttccttcccccagGGTACTGCCCAAGGAGAGCTCTTCCTAGATGATGGCCACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtattgggtatcctctatgtgccttgccttcaggggtgctcaggtttgct #### Gbf1_ID9758_2 --> 0 - 1 Original Alignment GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAg tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAggtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg Alignment from CESAR GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAg tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAggtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg Alignment from Spaln_aa2Genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg Alignment from Spaln_nt2Genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg Alignment from Pairagon GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg Alignment from Exonerate_protein2genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg Alignment from Exonerate_coding2genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg Alignment from GeneWise GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG tctctttcctatcttggactaatcatttaatgttctttttctttccccagGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtgagtcccatgtgcaggaaacagtgtaacgggaggaatacatgaatttg #### Gbf1_ID9778_3 --> 2 - 1 Original Alignment aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagaaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAggtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat Alignment from CESAR aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagaaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAggtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat Alignment from Spaln_aa2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAGgtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat Alignment from Spaln_nt2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAGgtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat Alignment from Pairagon AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAGgtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat Alignment from Exonerate_protein2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAGgtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat Alignment from Exonerate_coding2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAGgtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat Alignment from GeneWise AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG ttgttagagtcttttcagtgttgatttgtctgtctgtctgttccctgtagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCACTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCTCTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAGgtgagtacttaggctttgatggctctgcagcactccatctcctgctgcat #### Gbf1_ID9781_4 --> 2 - 0 Original Alignment atCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagatCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc Alignment from CESAR atCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagatCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc Alignment from Spaln_aa2Genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc Alignment from Spaln_nt2Genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc Alignment from Pairagon ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc Alignment from Exonerate_protein2genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc Alignment from Exonerate_coding2genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc Alignment from GeneWise ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ccctttcctgtcttccagacagaatttatgagcccggttctctcttgcagATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAATATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTAAGgtgggggggaggggataacaacgaggctaatggccaagaactcataggcc #### Gbf1_ID9791_10 --> 0 - 1 Original Alignment GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAg ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAggtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag Alignment from CESAR GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAg ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAggtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag Alignment from Spaln_aa2Genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag Alignment from Spaln_nt2Genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag Alignment from Pairagon GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag Alignment from Exonerate_protein2genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag Alignment from Exonerate_coding2genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag Alignment from GeneWise GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttttgccttctttttgttcatctgtctcctagccacctgtttccctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGAGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtacgtactctctgcaaggctctgcctattcatgtcttccatcctagcag #### Gbf1_ID9793_12 --> 0 - 0 Original Alignment CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca Alignment from CESAR CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca Alignment from Spaln_aa2Genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca Alignment from Spaln_nt2Genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca Alignment from Pairagon CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca Alignment from Exonerate_protein2genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca Alignment from Exonerate_coding2genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca Alignment from GeneWise CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gagttacactcagcctcagaaacctaatgctgtgtcccttgctttttcagCTACTCAGCGTTGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTTTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtgagtatctgaccttggaaagtaaaacataaacaggagactacatggca #### Gbf1_ID9798_17 --> 0 - 2 Original Alignment CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGaggtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt Alignment from CESAR CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGaggtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt Alignment from Spaln_aa2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGAGgtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt Alignment from Spaln_nt2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGAGgtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt Alignment from Pairagon CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGAGgtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt Alignment from Exonerate_protein2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGAGgtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt Alignment from Exonerate_coding2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGAGgtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt Alignment from GeneWise CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG cttacttaaaggcatagcaacgtttgattccccattggtctccctcacagCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCAATGGATAACACAGAGGTAGCCCAATGGCTACGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGCTGGAGAGTTTTGTGAGgtctgaaagaagtaagcattgggcgaactgagatggcactcaataatggt #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACaggtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACaggtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACAGgtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACAGgtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACAGgtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACAGgtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACAGgtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG ctgttatgaaagagctcatggcttctaaggtctctcattgcttcccccagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTCTGTCTAGAAATGCTGCTAAGGATTGTGTTAGAGAACAGgtacctgagggcaggtctgagaaccttataggcagaccccatactgaggt #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccaggaGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatctcagctcgtactctaactgctttcctttcttcccagGAGCACAGTCGGACAGTGAACTCCCATTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTTCCGACTCAGAGGTCTACACAGACCATGGCAGGCCTGGCAAAATACATCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTGgtaagtctactcccatcctaggcgtaaaacaaaagggttttagttctcag #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgcacacacacacactctctctctgactcattattgactgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGgtaaggcacacctcttaagagaaagttcagatcacaaggcaaaaagattg #### Gda_ID4895_9 --> 0 - 2 Original Alignment ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGtc gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGtcgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg Alignment from CESAR ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGtc gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGtcgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg Alignment from Spaln_aa2Genome ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTC gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGTCgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg Alignment from Spaln_nt2Genome ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTC gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGTCgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg Alignment from Pairagon ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTC gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGTCgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg Alignment from Exonerate_protein2genome ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTC gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGTCgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg Alignment from Exonerate_coding2genome ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTC gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGTCgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg Alignment from GeneWise ACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTC gtgtgatcattttaggtagtaaactgtatcttatatttgtgtttcttcagACAGTAATGGCACATGGCTGCTACCTTTCTGAAGAAGAACTTAATATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCAAACTCTAATCTGTCgtaagtagacaataattgcttggtagatggctgatgtgcattgtaagatg #### Gda_ID4900_5 --> 2 - 2 Original Alignment atAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGag ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagatAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGaggtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa Alignment from CESAR atAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGag ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagatAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGaggtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa Alignment from Spaln_aa2Genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGAGgtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa Alignment from Spaln_nt2Genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGAGgtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa Alignment from Pairagon ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGAGgtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa Alignment from Exonerate_protein2genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGAGgtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa Alignment from Exonerate_coding2genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGAGgtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa Alignment from GeneWise ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctgaattactactgggtacataatgagtctcttgtttttccttgaagATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACTGAGGAGTCAGTCAAGGAGACAGAGAGgtaagatgcctaggggaggggtggggttcatctatattttagatgagtaa #### Gfra1_ID12598_7 --> 2 - 0 Original Alignment aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagaaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga Alignment from CESAR aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagaaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga Alignment from Spaln_aa2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagAAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga Alignment from Spaln_nt2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagAAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga Alignment from Pairagon AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagAAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga Alignment from Exonerate_protein2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagAAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga Alignment from Exonerate_coding2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagAAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga Alignment from GeneWise AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG gttatgctttgctagcctctgaaatggattcttgacctatgatttcctagAAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTATCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCGGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAGgtatgcagtgggtggttttcttcaagagctgacttctggggggactgtga #### Gfra1_ID12683_2 --> 2 - 1 Original Alignment atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gggtccccactagtctgctgcattcaagtcagacttcttgtttcttctagatTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGggtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc Alignment from CESAR atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gggtccccactagtctgctgcattcaagtcagacttcttgtttcttctagatTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGggtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc Alignment from Spaln_aa2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccactagtctgctgcattcaagtcagacttcttgtttcttctagATTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGGgtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc Alignment from Spaln_nt2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccactagtctgctgcattcaagtcagacttcttgtttcttctagATTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGGgtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc Alignment from Pairagon ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccactagtctgctgcattcaagtcagacttcttgtttcttctagATTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGGgtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc Alignment from Exonerate_protein2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccactagtctgctgcattcaagtcagacttcttgtttcttctagATTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGGgtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc Alignment from Exonerate_coding2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccactagtctgctgcattcaagtcagacttcttgtttcttctagATTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGGgtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc Alignment from GeneWise TTCCTAGCCACTCTGTACTTCGTGCTGCCACTCCTGGATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG ctagtctgctgcaTTCAAGTCAGACTTCTTGTTT---------CTTCTAGATTTGCTGATGTCGGCTGAGGTGAGTGGTGGGGACCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGGgtgagtactacatgaccccaccagcatgccgggcttcctctcagagagcc #### Gif_ID3278_2 --> 2 - 1 Original Alignment ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagctGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAggtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc Alignment from CESAR ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagctGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAggtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc Alignment from Spaln_aa2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagCTGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGgtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc Alignment from Spaln_nt2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagCTGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGgtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc Alignment from Pairagon CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagCTGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGgtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc Alignment from Exonerate_protein2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagCTGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGgtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc Alignment from Exonerate_coding2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagCTGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGgtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc Alignment from GeneWise CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG agaaagagggctgagtgatgatttttgtgatgtcccttttcctttgacagCTGTGCCCCCAGATCAGCAACCCTGGGTTGAGGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGTGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAGgtaagtcactgggagcccatccctgaaacctgaatcttccacacacaggc #### Gif_ID3281_5 --> 2 - 0 Original Alignment acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagacACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGgtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc Alignment from CESAR acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagacACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGgtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc Alignment from Spaln_aa2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGgtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc Alignment from Spaln_nt2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGgtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc Alignment from Pairagon ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGgtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc Alignment from Exonerate_protein2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGgtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc Alignment from Exonerate_coding2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCAT actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATgcaggtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc Alignment from GeneWise ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG actggctgtggtgataatcgagatgggagtttattgtgttttttccgtagACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAAGCATTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAGgtgagacgtcctatttgctaggccacactaaaaacattagactgtatggc #### Gldc_ID6393_21 --> 0 - 1 Original Alignment ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAg ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAggtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg Alignment from CESAR ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAg ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAggtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg Alignment from Spaln_aa2Genome ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAGgtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg Alignment from Spaln_nt2Genome ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAGgtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg Alignment from Pairagon ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAGgtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg Alignment from Exonerate_protein2genome ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAGgtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg Alignment from Exonerate_coding2genome ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAGgtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg Alignment from GeneWise ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG ttttatctctactgctcaatggctgctgagtctgagcttcctctccccagATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAACCACCATTCTAAATGCCAACTACATGGCAAAACGATTAGAGAAACATTACAGAGTACTTTTTAGAGGTGCAAGAGgtaggtatctctctctctctctccctctctctctctcttgtgtgtgtgtg #### Gldc_ID6396_18 --> 0 - 0 Original Alignment GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca Alignment from CESAR GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca Alignment from Spaln_aa2Genome GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca Alignment from Spaln_nt2Genome GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca Alignment from Pairagon GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca Alignment from Exonerate_protein2genome GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca Alignment from Exonerate_coding2genome GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca Alignment from GeneWise GTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACGTATCCATCTACCAATGGTGTATTTGAAGAGAATATCGGCGATGTGTGCGCCCTGATTCACCAACACGGAGGACAGGTCTACCTCGACGGGGCGAACATGAATGCCCAG tgtgaaagtcagatcaattacttcctcttctgtttcctctcttgcccaagGTGGACCAACACAAGGAGAACCTGGCCGCCATCATGATCACATATCCTTCTACCAATGGTGTATTTGAAGAAAATATCGGCGATGTGTGCGCCCTGATCCACCAACATGGAGGTCAGGTCTACCTCGACGGGGCAAACATGAATGCTCAGgtgagtatacttagtgcccattcgaaaaggaacagagagtttttttttca #### Gldc_ID6399_16 --> 1 - 0 Original Alignment cGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagtGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa Alignment from CESAR cGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagtGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa Alignment from Spaln_aa2Genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa Alignment from Spaln_nt2Genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa Alignment from Pairagon CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa Alignment from Exonerate_protein2genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa Alignment from Exonerate_coding2genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa Alignment from GeneWise CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA gggaaagcttggaacccacaaggctgactttctttttttttcttctttagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAGAAAGGAGAGAGACACAGAACAgtaggagagcatcagcaggtattatttctgatattcccatcacattataa #### Gldc_ID6400_15 --> 0 - 2 Original Alignment CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACaggtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt Alignment from CESAR CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACaggtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt Alignment from Spaln_aa2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACAGgtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt Alignment from Spaln_nt2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACAGgtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt Alignment from Pairagon CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACAGgtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt Alignment from Exonerate_protein2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACAGgtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt Alignment from Exonerate_coding2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACAGgtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt Alignment from GeneWise CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaactcacacatgcttattcaaattctattttccattagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCGCTGGATCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGTCAAACAGgtaggcgactgcattgcatcctcttcggttggcagctctacaattgattt #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagtTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagtTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtatgaggaccggcctgactctaatttatagtgggactttggtgttatagTTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTTGTGCACAGCATGATTCCACTGgtgagggtttgtgtggctagccctatacacctgtgggtcatattcgatac #### Gldc_ID6403_12 --> 0 - 2 Original Alignment GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACaggtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat Alignment from CESAR GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACaggtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat Alignment from Spaln_aa2Genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACAGgtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat Alignment from Spaln_nt2Genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACAGgtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat Alignment from Pairagon GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACAGgtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat Alignment from Exonerate_protein2genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACAGgtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat Alignment from Exonerate_coding2genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACAGgtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat Alignment from GeneWise GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagcgttatccctgtctccagcctctgcctttctcttaccttttcagGAATTAGTTTCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAACAGgtaggtgtggcttcagcaaatcctgcattttgtgttctggtggtaggaat #### Gldc_ID6405_10 --> 2 - 0 Original Alignment ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagggCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa Alignment from CESAR ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagggCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa Alignment from Spaln_aa2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagGGCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa Alignment from Spaln_nt2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagGGCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa Alignment from Pairagon GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagGGCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa Alignment from Exonerate_protein2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagGGCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa Alignment from Exonerate_coding2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagGGCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa Alignment from GeneWise GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagcgctgtctgatatgaaatgttatgtggcctttcccagGGCTCAAGCGAGCGGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGGGCAGCTCAGAGACAAATCAACTTTCGACTCTTCGATGACGGCACAgtaaaccagacagtattagacgtattcagttcttcgtgtctctcatgaaa #### Gldc_ID6410_5 --> 1 - 2 Original Alignment aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagaCACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCaagtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from CESAR aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagaCACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCaagtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Spaln_aa2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCAAgtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Spaln_nt2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCAAgtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Pairagon ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCAAgtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Exonerate_protein2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCAAgtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Exonerate_coding2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCAAgtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from GeneWise ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaaggggaaagaaaatcttcaagtttagatacactgtcatttctttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACGATAGCTGTTGTCCAGACTCGAGCCAAgtacgccatttaaattgtgttttgagccatgggtaatgttttatcatctc #### Gldc_ID6414_3 --> 2 - 2 Original Alignment gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tctggtaacctgtttgctgtgaacctgttattattactttctgttctcaggtGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtggtgagtcatctatctccttgctagagaacagggatactagatctgttgtc Alignment from CESAR gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tctggtaacctgtttgctgtgaacctgttattattactttctgttctcaggtGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtggtgagtcatctatctccttgctagagaacagggatactagatctgttgtc Alignment from Spaln_aa2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tctggtaacctgtttgctgtgaacctgttattattactttctgttctcagGTGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATGgtgagtcatctatctccttgctagagaacagggatactagatctgttgtc Alignment from Spaln_nt2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tctggtaacctgtttgctgtgaacctgttattattactttctgttctcagGTGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATGgtgagtcatctatctccttgctagagaacagggatactagatctgttgtc Alignment from Pairagon GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tctggtaacctgtttgctgtgaacctgttattattactttctgttctcagGTGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATGgtgagtcatctatctccttgctagagaacagggatactagatctgttgtc Alignment from Exonerate_protein2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tctggtaacctgtttgctgtgaacctgttattattactttctgttctcagGTGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATGgtgagtcatctatctccttgctagagaacagggatactagatctgttgtc Alignment from Exonerate_coding2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tctggtaacctgtttgctgtgaacctgttattattactttctgttctcagGTGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATGgtgagtcatctatctccttgctagagaacagggatactagatctgttgtc Alignment from GeneWise GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tctggtaacctgtttgctgtgaacctgttattattactttctgttctcagGTGAGAATGATATCCTCGAGACTCTGCATGCCATTGCAAGTAAGAACCAGATCTGGAGGTCTTATGTTGGTATGGGCTATTACAACTGTTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATGgtgagtcatctatctccttgctagagaacagggatactagatctgttgtc #### Glyat_ID3429_2 --> 0 - 0 Original Alignment GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa Alignment from CESAR GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa Alignment from Spaln_aa2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa Alignment from Spaln_nt2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa Alignment from Pairagon GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa Alignment from Exonerate_protein2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa Alignment from Exonerate_coding2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa Alignment from GeneWise GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaatttcccttcatctaatcaagacttgtctcttccccccccttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGACCTCAAGAACAGgtacgttgactggtgtggaacagatatacttttatggtgattctgcagaa #### Gm815_ID5778_2 --> 0 - 1 Original Alignment TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt tattctccccactacagccttcactgatctctctcccctttgcggttcagTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACtgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt Alignment from CESAR TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt tattctccccactacagccttcactgatctctctcccctttgcggttcagTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACtgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt Alignment from Spaln_aa2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT tattctccccactacagccttcactgatctctctcccctttgcggttcagTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACTgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt Alignment from Spaln_nt2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT tattctccccactacagccttcactgatctctctcccctttgcggttcagTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACTgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt Alignment from Pairagon TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT tattctccccactacagccttcactgatctctctcccctttgcggttcagTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACTgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt Alignment from Exonerate_protein2genome GAGTCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT tattctccccactacagccttcactgatctctctcccctttgcggttCAGTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACTgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt Alignment from Exonerate_coding2genome GAGTCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT tattctccccactacagccttcactgatctctctcccctttgcggttCAGTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACTgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt Alignment from GeneWise ATGGCCCTGTCTGAGTCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT tctccccactacagccttcactgatctctctccccTTTGCGGTT---CAGTCCTTAGGAACAATGCTCCTGTGCTGCGTAGAAGCCCATGCCATGGGATTTCAGAACACCTCCTTCTCTATGTTTAGAACTGCTTCCCATACTTTTTTTCCCCACTgtgccgtgagctagtaaacttggtcactactggtatctgctttttttttt #### Gna14_ID4045_4 --> 1 - 2 Original Alignment tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagtTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCcggtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg Alignment from CESAR tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagtTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCcggtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg Alignment from Spaln_aa2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagTTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCCGgtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg Alignment from Spaln_nt2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagTTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCCGgtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg Alignment from Pairagon TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagTTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCCGgtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg Alignment from Exonerate_protein2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagTTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCCGgtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg Alignment from Exonerate_coding2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagTTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCCGgtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg Alignment from GeneWise TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tttcccttcttgaaatggagcctcagcacatggaattctcttgttctcagTTACCTGACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCAACACAACAGGACGTGCTTCGTGTTAGAGTGCCCACCACTGGTATCATAGAATATCCATTCGACCTGGAAAACATTATCTTCCGgtacgcctgcctccaagacagtgtcctttaaagattggttgttcagaggg #### Gnaq_ID4032_6 --> 0 - 1 Original Alignment AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATg tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATggtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt Alignment from CESAR AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATg tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATggtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt Alignment from Spaln_aa2Genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATGgtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt Alignment from Spaln_nt2Genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATGgtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt Alignment from Pairagon AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATGgtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt Alignment from Exonerate_protein2genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATGgtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt Alignment from Exonerate_coding2genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATGgtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt Alignment from GeneWise AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG tctgtaactctgtaactcactcctaaatataaacgtgttttttattttagAACCGTATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTTTTAAACAAAAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAATTGACTACTTCCCAGAATATGATGgtaggtggccacccaagccagcctcacactaggacaggatgtgacatggt #### Got1_ID8752_3 --> 0 - 1 Original Alignment GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGggtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt Alignment from CESAR GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGggtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt Alignment from Spaln_aa2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGGgtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt Alignment from Spaln_nt2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGGgtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt Alignment from Pairagon GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGGgtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt Alignment from Exonerate_protein2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGGgtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt Alignment from Exonerate_coding2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGGgtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt Alignment from GeneWise GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattgacaacaacctgtcacacttggttttatgttacagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGGgtatgactgctagccagagaggggctgcgccaagcatctgggagggctgt #### Gpam_ID11533_16 --> 0 - 0 Original Alignment CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc Alignment from CESAR CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc Alignment from Spaln_aa2Genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc Alignment from Spaln_nt2Genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc Alignment from Pairagon CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc Alignment from Exonerate_protein2genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc Alignment from Exonerate_coding2genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc Alignment from GeneWise CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG ttaagaaaaatatgaggccaactcatctcatatgtggctttcctgtttagCCCTGCCAAACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAGgtgggcgaaatggcctggctctattgtcttcatttattttctagctcttc #### Gpam_ID11539_10 --> 0 - 0 Original Alignment GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc Alignment from CESAR GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc Alignment from Spaln_aa2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc Alignment from Spaln_nt2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc Alignment from Pairagon GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc Alignment from Exonerate_protein2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc Alignment from Exonerate_coding2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc Alignment from GeneWise GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tggcagctgcagcagcagcaaacaggacctttcttttttttaaatgacagGGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGTGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCAGAGTGGATTTTGCACAGCCATTTTCCTTGAAGgtaagggtgtgccaaggtacaggcccaaagcttgctttttaaacagttcc #### Gpam_ID11545_4 --> 1 - 2 Original Alignment gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag ttcaattttacctgagaatatacaccactctcgccccccttttatattaggCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCaggtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg Alignment from CESAR gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag ttcaattttacctgagaatatacaccactctcgccccccttttatattaggCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCaggtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg Alignment from Spaln_aa2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG ttcaattttacctgagaatatacaccactctcgccccccttttatattagGCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAGgtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg Alignment from Spaln_nt2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG ttcaattttacctgagaatatacaccactctcgccccccttttatattagGCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAGgtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg Alignment from Pairagon GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG ttcaattttacctgagaatatacaccactctcgccccccttttatattagGCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAGgtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg Alignment from Exonerate_protein2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG ttcaattttacctgagaatatacaccactctcgccccccttttatattagGCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAGgtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg Alignment from Exonerate_coding2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG ttcaattttacctgagaatatacaccactctcgccccccttttatattagGCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAGgtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg Alignment from GeneWise GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG ttcaattttacctgagaatatacaccactctcgccccccttttatattagGCACAGAGGATGGCTGGCAAGACGGCTGTCTTACATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAGgtgagtgtggggccactgttgacaaagcagggacagggcggatgtggctg #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG gaggcctgagggcatccgtggtctgaggtttgcgctccccttcttttcagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCATTGCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTGCTGGTGCGCGTCCTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACCAGCATCTATTTAGAGGCCAAGgtaaggccacccaaccttgatgtggcacccttgggtccttggacagagtt #### Grk5_ID13400_3 --> 2 - 0 Original Alignment acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagacAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct Alignment from CESAR acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagacAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct Alignment from Spaln_aa2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagACAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct Alignment from Spaln_nt2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagACAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct Alignment from Pairagon ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagACAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct Alignment from Exonerate_protein2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagACAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct Alignment from Exonerate_coding2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagACAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct Alignment from GeneWise ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cccagaatgcttgacccaattcaccacaccattgcctgtgtctcgcttagACAGAGATTACTACAGTTTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACCTGGTGgtgggtacctgccacatgacccttgagtctcctgtgtttggtaagtttct #### Gsto1_ID10375_3 --> 1 - 0 Original Alignment gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtaggCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta Alignment from CESAR gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtaggCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta Alignment from Spaln_aa2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtagGCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta Alignment from Spaln_nt2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtagGCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta Alignment from Pairagon GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtagGCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta Alignment from Exonerate_protein2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtagGCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta Alignment from Exonerate_coding2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtagGCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta Alignment from GeneWise GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttttgggagacagaaactgtcacttactgatgatgttttccctactgtagGCATGAAGTAATCAATGTCAACTTGAAAAATAAGCCAGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTTCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTGGATGAGGCCTACCCAGAGAAAAAGTTATTTCCAGATGATCCATACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGgtatgtttgaaaaaaactcaaacctaaagcaaaaccctccttttgttcta #### Gsto2_ID10386_3 --> 1 - 0 Original Alignment gCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcaggCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt Alignment from CESAR gCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcaggCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt Alignment from Spaln_aa2Genome GCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcagGCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt Alignment from Spaln_nt2Genome GCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcagGCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt Alignment from Pairagon GCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcagGCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt Alignment from Exonerate_protein2genome GCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcagGCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt Alignment from Exonerate_coding2genome GCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcagGCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt Alignment from GeneWise GCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGCCAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGGATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATTGGAGCTATTCTGTAAG ttcccttttgtttttccttaattgttgtaggtttttttttttttttgcagGCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATGCTTTTGGCCGAATTCCTGTCTTGGAGAATAGCCAGTGTCAGCTGGTCTATGAATCAGTCATTGCTTGTGAGTACCTGGATGATGTCTACCCAGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGCGCTCGCCAGAAGATGTTATTGGAGTTATTCTGTAAGgtacgtgcagttctaaagagccacacagatgtgtctttgtttgtgtgtgt #### Gsto2_ID10387_4 --> 0 - 0 Original Alignment GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct Alignment from CESAR GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct Alignment from Spaln_aa2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct Alignment from Spaln_nt2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct Alignment from Pairagon GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct Alignment from Exonerate_protein2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct Alignment from Exonerate_coding2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct Alignment from GeneWise GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG acaggtctcacaaacatcctgactgagaaacagttctctctttgtcaaagGTCCCGCCTTTAAGCAAGGAATGTCTGATCGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaaaaaggagcacctgacccatcaggggtggttgagctgcgtagtgtct #### Gsto2_ID10388_5 --> 0 - 2 Original Alignment ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTga agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTgagtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa Alignment from CESAR ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTga agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTgagtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa Alignment from Spaln_aa2Genome ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTGA agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTGAgtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa Alignment from Spaln_nt2Genome ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTGA agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTGAgtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa Alignment from Pairagon ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTGA agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTGAgtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa Alignment from Exonerate_protein2genome ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTGA agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTGAgtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa Alignment from Exonerate_coding2genome ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTGA agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTGAgtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa Alignment from GeneWise ATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGTATATGGACTGGCTGA agcaaatcagagtatacattaactggctgtgccgcatgcctttcctgtagATTCTTGAATATCAGAACACTACCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTTGTCTGGCCCTGGTTTGAGCGCCTAGACATATATGGACTGGCTGAgtaagtcatcaggttatgtgactgcaaattctatgagtgctaattgttaa #### Gucy2g_ID11571_20 --> 2 - 0 Original Alignment ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGA---GGCACCATTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagctCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat Alignment from CESAR ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagctCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat Alignment from Spaln_aa2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagCTCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat Alignment from Spaln_nt2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCA---TTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagCTCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat Alignment from Pairagon CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAG---GCACCATTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagCTCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat Alignment from Exonerate_protein2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagCTCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat Alignment from Exonerate_coding2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagCTCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat Alignment from GeneWise CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG tgacttccccagtgatgatcgcaacttaggttctttgttctttctctcagCTCTCCGGATTCATGTTTCCCAGAGCACTGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAGAGAGAGGCAGCACCGTTTCCGTCAAGgtaagtctgggttcaccctttctcaccttcccagtctgtgtccttgatat #### Gucy2g_ID11577_14 --> 2 - 1 Original Alignment agCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGg gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagagCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGggtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga Alignment from CESAR agCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGg gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagagCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGggtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga Alignment from Spaln_aa2Genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagAGCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGGgtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga Alignment from Spaln_nt2Genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagAGCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGGgtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga Alignment from Pairagon AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagAGCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGGgtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga Alignment from Exonerate_protein2genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagAGCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGGgtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga Alignment from Exonerate_coding2genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagAGCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGGgtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga Alignment from GeneWise AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG gttgtacccattgtcttgcagagctccacctttgtctcttccttatgtagAGCTCTACTGGACAGCTCCCGAGCTGCTGCAGCTTCGAGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTACCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCATGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGGgtaagcctggagtatgctgctggtggggctaaggagcttgtgtgcggaga #### Gucy2g_ID11579_12 --> 0 - 0 Original Alignment GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta Alignment from CESAR GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta Alignment from Spaln_aa2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta Alignment from Spaln_nt2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta Alignment from Pairagon GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta Alignment from Exonerate_protein2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta Alignment from Exonerate_coding2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta Alignment from GeneWise GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtgtgtcagctctagtctgggtgatgtttttcccttgtgttcacacagGATGTTATGAGGAACTCTGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAATgtagatttcacattgtacagtattacattctacagttgcaccctatggta #### Gucy2g_ID11581_10 --> 0 - 0 Original Alignment GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg Alignment from CESAR GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg Alignment from Spaln_aa2Genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg Alignment from Spaln_nt2Genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg Alignment from Pairagon GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg Alignment from Exonerate_protein2genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg Alignment from Exonerate_coding2genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg Alignment from GeneWise GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG tcctgaaaaggagatagaaagagggtcttcctcttgttcctctcctgtagGGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTGgtaagcattctctctgcccttctgcatctctctactcattgtgagaagtg #### Habp2_ID12058_4 --> 2 - 1 Original Alignment caCAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAg tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagcaCAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAggtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg Alignment from CESAR caCAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAg tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagcaCAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAggtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg Alignment from Spaln_aa2Genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagCACAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg Alignment from Spaln_nt2Genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagCACAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg Alignment from Pairagon CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagCACAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg Alignment from Exonerate_protein2genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagCACAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg Alignment from Exonerate_coding2genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagCACAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg Alignment from GeneWise CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tcaagtaatgtccaacccccatgctccacacccacccgtctcatcctcagCACAAAATAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtgagttgcaggcacttttctgtgccgaaggttttctctacttcaatttg #### Habp2_ID12060_6 --> 2 - 2 Original Alignment gtCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCag acaacaagtccatgactcactgttctcaccctgcattctcaccccttcaggtCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCaggtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa Alignment from CESAR gtCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCag acaacaagtccatgactcactgttctcaccctgcattctcaccccttcaggtCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCaggtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa Alignment from Spaln_aa2Genome GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG acaacaagtccatgactcactgttctcaccctgcattctcaccccttcagGTCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCAGgtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa Alignment from Spaln_nt2Genome GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG acaacaagtccatgactcactgttctcaccctgcattctcaccccttcagGTCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCAGgtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa Alignment from Pairagon GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG acaacaagtccatgactcactgttctcaccctgcattctcaccccttcagGTCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCAGgtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa Alignment from Exonerate_protein2genome GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG acaacaagtccatgactcactgttctcaccctgcattctcaccccttcagGTCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCAGgtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa Alignment from Exonerate_coding2genome GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG acaacaagtccatgactcactgttctcaccctgcattctcaccccttcagGTCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCAGgtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa Alignment from GeneWise GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG acaacaagtccatgactcactgttctcaccctgcattctcaccccttcagGTCCAGACGACTGTTATGTCGGTGATGGGTACTCTTACCGAGGCAAAGTGAGTAAGACAGTGAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGGTGCAGAGACCCACGGGATTGCAGAGCACAACTTCTGCAGgtaacgtctactgctgcctgtaggtctcatcttggttgcttggctttgaa #### Habp2_ID12061_7 --> 1 - 1 Original Alignment aAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTg acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagaAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTggtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg Alignment from CESAR aAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTg acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagaAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTggtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg Alignment from Spaln_aa2Genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagAAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTGgtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg Alignment from Spaln_nt2Genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagAAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTGgtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg Alignment from Pairagon AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagAAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTGgtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg Alignment from Exonerate_protein2genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagAAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTGgtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg Alignment from Exonerate_coding2genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagAAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTGgtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg Alignment from GeneWise AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG acgaatgcctctgagccctgatggtcagctctgtgtgttctgtccctcagAAACCCAGATGGAGACCACAAACCCTGGTGTTTTGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTGgtaagtgtgtgctacctgcacagcctagggagaaaatggctggtcttagg #### Hectd2_ID7146_4 --> 1 - 0 Original Alignment gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaaggGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta Alignment from CESAR gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaaggGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta Alignment from Spaln_aa2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta Alignment from Spaln_nt2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta Alignment from Pairagon GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta Alignment from Exonerate_protein2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta Alignment from Exonerate_coding2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta Alignment from GeneWise GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG taatatttctctccacttatgattaatattgtcttgtacttgactcaaagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAGgtaccgaagggcatacataagatacttctccttcccttgtttcaaattta #### Hells_ID7701_8 --> 0 - 0 Original Alignment ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa Alignment from CESAR ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa Alignment from Spaln_aa2Genome ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa Alignment from Spaln_nt2Genome ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa Alignment from Pairagon ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa Alignment from Exonerate_protein2genome ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa Alignment from Exonerate_coding2genome ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa Alignment from GeneWise ATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACAATTGCATTGATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAA tcggaaaatgattgtattaacatttatgccatgtgtttttaaatttccagATGCTTTGGGAAAATGGAATTAATGGCATTTTAGCAGATGAAATGGGTTTGGGAAAGACTGTTCAGTGCATTGCTACGACTGCATTAATGATTCAGAGGGGAGTACCTGGACCTTTTCTTGTTTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTTAAAAGATTTACTCCAGAAgtaggctatattttttacattaatatattgcatatatttattatatgaaa #### Hells_ID7704_11 --> 1 - 0 Original Alignment cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagcTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt Alignment from CESAR cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagcTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt Alignment from Spaln_aa2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt Alignment from Spaln_nt2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt Alignment from Pairagon CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt Alignment from Exonerate_protein2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt Alignment from Exonerate_coding2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt Alignment from GeneWise CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG ataattggattcatgtgatagatgaattatgtctggtttttccttgacagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCCGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAGgtaagaaatctccctgtcctcctcaatttatacttagtacactgggaatt #### Hells_ID7706_13 --> 0 - 2 Original Alignment AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATaggtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt Alignment from CESAR AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATaggtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt Alignment from Spaln_aa2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATAGgtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt Alignment from Spaln_nt2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATAGgtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt Alignment from Pairagon AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATAGgtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt Alignment from Exonerate_protein2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATAGgtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt Alignment from Exonerate_coding2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATAGgtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt Alignment from GeneWise AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAG-- gcctggcttctgctgttgttaaacagatgtctgtctgtctttccatacagAAGGAGACAGTTGAGCTAAGTCCAACTGGAAGACCAAAACGACGGAGTAGAAAGTCAATAAATTACAGTGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCGGAAGTAAACAGAGATAGgtaagtgtttaaaggtatatttggagatttaaattatgttttatatttgt #### Hells_ID7708_15 --> 0 - 0 Original Alignment ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag Alignment from CESAR ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag Alignment from Spaln_aa2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag Alignment from Spaln_nt2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag Alignment from Pairagon ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag Alignment from Exonerate_protein2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag Alignment from Exonerate_coding2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag Alignment from GeneWise ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacgtttttttccctctctccctgtctccccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGgtgagactgactagaatttgaggtctttagtttcttatggatcagtatag #### Hells_ID7712_19 --> 2 - 2 Original Alignment atCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAag tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagatCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAaggtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg Alignment from CESAR atCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAag tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagatCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAaggtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg Alignment from Spaln_aa2Genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagATCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGgtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg Alignment from Spaln_nt2Genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagATCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGgtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg Alignment from Pairagon ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagATCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGgtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg Alignment from Exonerate_protein2genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagATCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGgtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg Alignment from Exonerate_coding2genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagATCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGgtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg Alignment from GeneWise ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG tctataataaacttgatttcttttgtttttgccgtttcctgttttgacagATCATTTCAAAGGTGGTCAATCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAGgtaaggttgaagtattgtaacatttaataatttatcagagtgagtgtgcg #### Hells_ID7713_20 --> 1 - 1 Original Alignment gGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTg agctctttgttaatttacatatacttggatggaatttgattttgtttaaggGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTggtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg Alignment from CESAR gGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTg agctctttgttaatttacatatacttggatggaatttgattttgtttaaggGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTggtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg Alignment from Spaln_aa2Genome GGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTG agctctttgttaatttacatatacttggatggaatttgattttgtttaagGGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTGgtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg Alignment from Spaln_nt2Genome GGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTG agctctttgttaatttacatatacttggatggaatttgattttgtttaagGGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTGgtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg Alignment from Pairagon GGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTG agctctttgttaatttacatatacttggatggaatttgattttgtttaagGGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTGgtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg Alignment from Exonerate_protein2genome GGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTG agctctttgttaatttacatatacttggatggaatttgattttgtttaagGGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTGgtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg Alignment from Exonerate_coding2genome GGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTG agctctttgttaatttacatatacttggatggaatttgattttgtttaagGGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTGgtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg Alignment from GeneWise GGAAGTAAAAGGATCCAGAGAGAAGGTCATTAGTGACGAAGATCTAGAATTACTGTTGGATCGAAGTGATCTCATTG agctctttgttaatttacatatacttggatggaatttgattttgtttaagGGAAGTAAAAGGATCAAGAGAGAAGGTCATTAGTGATGAAGATCTAGAACTACTGTTGGATCGAAGTGATCTCATTGgtcagtgttagccctatttttgtaaagaaacctgaaaccaatttagaatg #### Hif1an_ID9065_3 --> 1 - 1 Original Alignment gTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAg ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacaggTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAggtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc Alignment from CESAR gTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAg ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacaggTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAggtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc Alignment from Spaln_aa2Genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacagGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAGgtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc Alignment from Spaln_nt2Genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacagGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAGgtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc Alignment from Pairagon GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacagGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAGgtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc Alignment from Exonerate_protein2genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacagGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAGgtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc Alignment from Exonerate_coding2genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacagGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAGgtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc Alignment from GeneWise GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccagggactgctcagtgatactgatgggttctcagtcctgtgatccacagGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTAACCTCTAACCTGTTGCTCATTGGTATGGAAGgtaagagatgattccagaagcatggttttgtaccacgcaaacttaatttc #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACtggtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACtggtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACTGgtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACTGgtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACTGgtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACTGgtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACTGgtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taagtttctatagcaatcactgaactaacaaggtgacttttttcttacagGTGGACTTTGATAATCCTGACTATGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTACTTTACATTCCTATGTACTGgtaagttggagagggacgaggggctcttgaaacactttctgtcctgtttc #### Hoga1_ID8379_2 --> 2 - 1 Original Alignment gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctaggcTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGtgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc Alignment from CESAR gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctaggcTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGtgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc Alignment from Spaln_aa2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctagGCTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGTgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc Alignment from Spaln_nt2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctagGCTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGTgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc Alignment from Pairagon GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctagGCTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGTgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc Alignment from Exonerate_protein2genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctagGCTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGTgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc Alignment from Exonerate_coding2genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctagGCTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGTgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc Alignment from GeneWise GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT tcttgaagaagtcagaataggtagactgctgagggctgctctgttcctagGCTTTGTGGTCCAGGGTTCAACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGATGTGGTGAGCCGTGTTCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCTGGCTCTGGCTGCAAGTgtaggtacccgatgccttgggacctggggtttcccagtggtttcgggggc #### Hoga1_ID8381_4 --> 0 - 0 Original Alignment GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa Alignment from CESAR GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa Alignment from Spaln_aa2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa Alignment from Spaln_nt2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa Alignment from Pairagon GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa Alignment from Exonerate_protein2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa Alignment from Exonerate_coding2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa Alignment from GeneWise GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT cagcccttcagacccaggacttgctttctcaggttctggctctcttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGATAGTGGTGGAGATgtatgaagctgcagctcccagattgctcagcttggcagcttgtaacccaa #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGggtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga Alignment from CESAR GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGggtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGGgtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGGgtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga Alignment from Pairagon GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGGgtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGGgtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGGgtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga Alignment from GeneWise GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcagaccttaattgatggacttgtttctagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCCAGCTATTCTGTGGgtaagcctcctgctgtttttgaacccccctgaccaaccaagttgcacaga #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGaagtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGaagtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca #### Hps1_ID8616_12 --> 0 - 2 Original Alignment AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGgagtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt Alignment from CESAR AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGgagtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt Alignment from Spaln_aa2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGGAgtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt Alignment from Spaln_nt2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGGAgtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt Alignment from Pairagon AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGGAgtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt Alignment from Exonerate_protein2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGGAgtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt Alignment from Exonerate_coding2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGGAgtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt Alignment from GeneWise AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctacggagcacaacccggaacagtccttttcttctctttactccaagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAGGTGAGCCAGGATCATCCTGGGAgtgagcggctgtacttggggcaaaagggagttgttcattcatgaacagtt #### Hpse2_ID8672_8 --> 0 - 2 Original Alignment GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCtt atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCatgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat Alignment from CESAR GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCtt atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCatgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat Alignment from Spaln_aa2Genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCATgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat Alignment from Spaln_nt2Genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCATgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat Alignment from Pairagon GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCATgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat Alignment from Exonerate_protein2genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCATgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat Alignment from Exonerate_coding2genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCATgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat Alignment from GeneWise GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT atagcttttaaagtctcatctatcctccgtgttctctttcccctccacagGTGGTCAATACTTACACTCCAGGAAAAAAGATTTGGCTGGAAAGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTATGCTGCAGGATTCATgtaggaaattgacattttcattctcaggaacgtctaggaacggcagtgat #### Hpse2_ID8710_3 --> 2 - 1 Original Alignment acATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAg gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagacATTGTCCGGAGTGACGTTGCCTTGGACAAGCAGAAAGGCTGTAAAATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAAAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCCTATTAACAggtatgtggattttgggcattcttctatattgatgacctcagtcggttggc Alignment from CESAR acATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAg gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagacATTGTCCGGAGTGACGTTGCCTTGGACAAGCAGAAAGGCTGTAAAATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAAAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCCTATTAACAggtatgtggattttgggcattcttctatattgatgacctcagtcggttggc Alignment from Spaln_aa2Genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagACATTGTCCGGAGTGACGTTGCCTTGGACAAGCAGAAAGGCTGTAAAATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAAAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCCTATTAACAGgtatgtggattttgggcattcttctatattgatgacctcagtcggttggc Alignment from Spaln_nt2Genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagACATTGTCCGGAGTGACGTTGCCTTGGACAAGCAGAAAGGCTGTAAAATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAAAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCCTATTAACAGgtatgtggattttgggcattcttctatattgatgacctcagtcggttggc Alignment from Pairagon ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagACATTGTCCGGAGTGACGTTGCCTTGGACAAGCAGAAAGGCTGTAAAATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAAAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCCTATTAACAGgtatgtggattttgggcattcttctatattgatgacctcagtcggttggc Alignment from Exonerate_protein2genome gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagacattgtccggagtgacgttgccttggacaagcagaaaggctgtaaaattgcccagcaccctgatgtcatgctggagctccaaagagagaaggcatcgcagatgcatctggttcttctgaaggagcaatactccaatacttacagtaacctcctattaacaggtatgtggattttgggcattcttctatattgatgacctcagtcggttggc Alignment from Exonerate_coding2genome gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagacattgtccggagtgacgttgccttggacaagcagaaaggctgtaaaattgcccagcaccctgatgtcatgctggagctccaaagagagaaggcatcgcagatgcatctggttcttctgaaggagcaatactccaatacttacagtaacctcctattaacaggtatgtggattttgggcattcttctatattgatgacctcagtcggttggc Alignment from GeneWise ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG gaaatgtgcattctgttttgtttttactacttgtactttttcatttttagACATTGTCCGGAGTGACGTTGCCTTGGACAAGCAGAAAGGCTGTAAAATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAAAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCCTATTAACAGgtatgtggattttgggcattcttctatattgatgacctcagtcggttggc #### Hrasls5_ID2196_2 --> 2 - 2 Original Alignment acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagacTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgggtaaaagtcttactatgaggactggggctttggatatcagaagcatttag Alignment from CESAR acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagacTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgggtaaaagtcttactatgaggactggggctttggatatcagaagcatttag Alignment from Spaln_aa2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagACTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGGgtaaaagtcttactatgaggactggggctttggatatcagaagcatttag Alignment from Spaln_nt2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagACTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGGgtaaaagtcttactatgaggactggggctttggatatcagaagcatttag Alignment from Pairagon ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagACTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGGgtaaaagtcttactatgaggactggggctttggatatcagaagcatttag Alignment from Exonerate_protein2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagACTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGGgtaaaagtcttactatgaggactggggctttggatatcagaagcatttag Alignment from Exonerate_coding2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagACTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGGgtaaaagtcttactatgaggactggggctttggatatcagaagcatttag Alignment from GeneWise ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG accataaaaggcagctgtgtatttatcagaacccatgatgtctttttcagACTCAGCAAGTTCTCAAGCGCTGTTTGTCCAGTTCTTGCCAAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGGgtaaaagtcttactatgaggactggggctttggatatcagaagcatttag #### Hrasls5_ID2198_4 --> 0 - 1 Original Alignment GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAa tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAagtaggtatggatggatatgctactgggatagtggttagaaattagcattg Alignment from CESAR GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAa tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAagtaggtatggatggatatgctactgggatagtggttagaaattagcattg Alignment from Spaln_aa2Genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAAgtaggtatggatggatatgctactgggatagtggttagaaattagcattg Alignment from Spaln_nt2Genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAAgtaggtatggatggatatgctactgggatagtggttagaaattagcattg Alignment from Pairagon GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAAgtaggtatggatggatatgctactgggatagtggttagaaattagcattg Alignment from Exonerate_protein2genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAAgtaggtatggatggatatgctactgggatagtggttagaaattagcattg Alignment from Exonerate_coding2genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAAgtaggtatggatggatatgctactgggatagtggttagaaattagcattg Alignment from GeneWise GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA tgggcatgtgcatgcagttgatctgcctcctgtctttatcctccccatagGGCAATCCAAGACCCAGACCTGTAGACCTGATTGAGATCTTTCGAATTGGCTATGAACATTGGGCGATCTATGTGGAAGATGACTGTGTGGTCCACCTGGCTCCTCCAAgtaggtatggatggatatgctactgggatagtggttagaaattagcattg #### Hspa12a_ID12807_8 --> 2 - 1 Original Alignment ctAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAg gctttcttatgcttggtcttttttatttaaactataattacttctaacagctAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAggtaaggtctggggctctttcccttcacttatcatctttcccttcagttat Alignment from CESAR ctAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAg gctttcttatgcttggtcttttttatttaaactataattacttctaacagctAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAggtaaggtctggggctctttcccttcacttatcatctttcccttcagttat Alignment from Spaln_aa2Genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG gctttcttatgcttggtcttttttatttaaactataattacttctaacagCTAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAGgtaaggtctggggctctttcccttcacttatcatctttcccttcagttat Alignment from Spaln_nt2Genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG gctttcttatgcttggtcttttttatttaaactataattacttctaacagCTAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAGgtaaggtctggggctctttcccttcacttatcatctttcccttcagttat Alignment from Pairagon CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG gctttcttatgcttggtcttttttatttaaactataattacttctaacagCTAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAGgtaaggtctggggctctttcccttcacttatcatctttcccttcagttat Alignment from Exonerate_protein2genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG gctttcttatgcttggtcttttttatttaaactataattacttctaacagCTAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAGgtaaggtctggggctctttcccttcacttatcatctttcccttcagttat Alignment from Exonerate_coding2genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG gctttcttatgcttggtcttttttatttaaactataattacttctaacagCTAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAGgtaaggtctggggctctttcccttcacttatcatctttcccttcagttat Alignment from GeneWise CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG gctttcttatgcttggtcttttttatttaaactataattacttctaacagCTAAGGAACATGTTCGACGTAACCGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAGgtaaggtctggggctctttcccttcacttatcatctttcccttcagttat #### Ighmbp2_ID4_13 --> 2 - 1 Original Alignment gtGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAG---------------AAGCCCCCGGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCTG---AAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAg ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctaggtGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGG------CCAGTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGCTTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAggtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca Alignment from CESAR gtGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAGAAGCCCCCGGGCTCT---------------CACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCTG---AAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAg ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctaggtGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGG------CCAGTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGCTTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAggtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca Alignment from Spaln_aa2Genome GTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAG---------------AAGCCCCCGGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCTG---AAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAG ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctagGTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGGCCA------GTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGCTTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAGgtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca Alignment from Spaln_nt2Genome GTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAG---------------AAGCCCCCGGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCT---GAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAG ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctagGTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGGC------CAGTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGCTTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAGgtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca Alignment from Pairagon GTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAGAAGCCCCCG---------------GGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCT---GAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAG ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctagGTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGGC------CAGTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGCTTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAGgtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca Alignment from Exonerate_protein2genome GTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAG---------------AAGCCCCCGGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCTG---AAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAG ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctagGTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGG------CCAGTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGCTTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAGgtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca Alignment from Exonerate_coding2genome GTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTT-GAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAG---------------AAGCCCCCGGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCTG---AAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAG ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctagGTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGGCC------AGTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGC-TTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAGgtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca Alignment from GeneWise GTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGCTGTTACCCGTGCTCGGCGGCACGTGGCAGTCATCTGTGATTCCCACACTGTCAACAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTACGCACAGCCTTTGAATACCTGGATGACATCGTCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCCAAGTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGCGAGAAGCCC---------------CCGGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGCCCAGACCGGACAGAGCACTTTAGGGCTACGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCACGACAGCACCGGGGAGGGGAAGGCTCGGCACATCACAGTGAGCAGGAGGAGCCCTGCCAGCTCTGGCAGTGTAGCCCCACAGCCTTCCTCACCGCCCAGCCCTGCACAGGCTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCACCGTCGTGCAGGCACATTGCCCTGTACAGCTGGATCTGAAG---GCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCGAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAG ctgctccctgccatggatcactgcctttcttctgcaaaaacctgccctagGTGAAGTTGGTTTTCTGGCTGAGGACAGGCGGATTAATGTTGTTGTTACCCGTGCTCGGCGG------CCAGTCATCTGTGATTCCCACACTGTCAATAACCATGCTTTTTTGAAGACCTTGGTGGATTATTTCACAGAGCATGGGGAGGTGCGCACAGCTTTTGAATACCTGGATGACATCATCCCTGAGAACTACACCCATGAGGGTTCCCAGGGCCACAGCCGTGTCCCCAAACCTAATTGCCCCAGCACCTCCATCAGGAAGCCTGCCAGTGATCAGGAGAGTGGCCAGGAGACCAGAGCAGCCCCTAGACATGGCCGCAGGAAGCCAAGTGAAAAGCCCCCGGGCTCTAAGCCCCCTGGCTCTCACGTCCAGTCCCAGCACAGCTCCAGTGCAAATGGCTCTGACAGAACTGGAGGGCCAGACCGGACAGAGCACTTTAGGGCTATGATTGAGGAGTTTGTGGCTAGCAAGGAGTCCCAGTTGGAGTTTCCCACATCCCTGAGTTCCCATGACAGGCTGCGAGTCCACCAGTTAGCTGAGGAGTTCGGGCTGAGGCATGACAGCACTGGGGAGGGGAAGGCTCGGCACATCACTGTGAGCAGGAGGAGCCCTGCCAGCTCAGGCAGTGTAGCCGCACAGCCTTCCTCACCACCCAGCCCTGCACAGGTTGAGCCTGAGCCTCGGGCAGAGGAGCCCGTCATCGTCGTGCAGGCACATTGCCCTGTGCAGGTGGATTTGAAGAAGGCACTGCATCTGGAGAGGCTGCAGCGGCAGCAAAGCTCCCAGGCTCAGACAGCCAAGGGTCAGCCAGGTGGGGACTCAAGGCCACAGAAGGCTTCACAGAAGAAAAAGAAAAAAGAACCAAAAGgtgagcccaaatctctcaggcacatctctagtgctgtctgatttctgtca #### Incenp_ID2603_16 --> 0 - 1 Original Alignment TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAg tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGggtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc Alignment from CESAR TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAg tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGggtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc Alignment from Spaln_aa2Genome TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAG tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGGgtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc Alignment from Spaln_nt2Genome TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAG tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGGgtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc Alignment from Pairagon TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAG tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGGgtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc Alignment from Exonerate_protein2genome TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAG tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGGgtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc Alignment from Exonerate_coding2genome TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAG tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGGgtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc Alignment from GeneWise TCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAG tgtcctcaaaggcaggggaggagctaatgaactgtgggtcctggctgcagTCTCCTGTTTGTACCTCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATTAGCATAGACGATTATGGGATGGACCTAAATAGTGATGACTCCACAGATGATGAGTCTCACCCCCGGAAACCCATCCCTTCCTGGGCCAAGGgtaagcggggcccaaagtttctgaagaggcttgggctgcctcctttcttc #### Incenp_ID2615_4 --> 2 - 2 Original Alignment gtCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTgg gtctcctgactgatttcggacggcatctttcttcctttctctgcccacaggtCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTgggtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga Alignment from CESAR gtCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTgg gtctcctgactgatttcggacggcatctttcttcctttctctgcccacaggtCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTgggtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga Alignment from Spaln_aa2Genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gtctcctgactgatttcggacggcatctttcttcctttctctgcccacagGTCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGGgtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga Alignment from Spaln_nt2Genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gtctcctgactgatttcggacggcatctttcttcctttctctgcccacagGTCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGGgtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga Alignment from Pairagon GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gtctcctgactgatttcggacggcatctttcttcctttctctgcccacagGTCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGGgtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga Alignment from Exonerate_protein2genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gtctcctgactgatttcggacggcatctttcttcctttctctgcccacagGTCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGGgtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga Alignment from Exonerate_coding2genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gtctcctgactgatttcggacggcatctttcttcctttctctgcccacagGTCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGGgtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga Alignment from GeneWise GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gtctcctgactgatttcggacggcatctttcttcctttctctgcccacagGTCACAGTTACCTAGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGGgtgagttcatgctagagcttttgtaggggtgctcagggtgcattgcagga #### Jak2_ID6231_7 --> 0 - 2 Original Alignment GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATAtcgtaattaatgccacattccacaggacagttctaggagctagctggtaggt Alignment from CESAR GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATAtcgtaattaatgccacattccacaggacagttctaggagctagctggtaggt Alignment from Spaln_aa2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATATCgtaattaatgccacattccacaggacagttctaggagctagctggtaggt Alignment from Spaln_nt2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATATCgtaattaatgccacattccacaggacagttctaggagctagctggtaggt Alignment from Pairagon GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATATCgtaattaatgccacattccacaggacagttctaggagctagctggtaggt Alignment from Exonerate_protein2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATATCgtaattaatgccacattccacaggacagttctaggagctagctggtaggt Alignment from Exonerate_coding2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATATCgtaattaatgccacattccacaggacagttctaggagctagctggtaggt Alignment from GeneWise GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aatttcattggttttccaattccatggttggccacattgtacctctgcagGAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTTGTGTCATTGATTGATGGGTATTACAGACTAACAGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCAATATCgtaattaatgccacattccacaggacagttctaggagctagctggtaggt #### Jak2_ID6234_10 --> 2 - 0 Original Alignment atAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagatttggccttgatattgttacagatAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta Alignment from CESAR atAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagatttggccttgatattgttacagatAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta Alignment from Spaln_aa2Genome ATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagatttggccttgatattgttacagATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta Alignment from Spaln_nt2Genome ATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagatttggccttgatattgttacagATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta Alignment from Pairagon ATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagatttggccttgatattgttacagATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta Alignment from Exonerate_protein2genome ATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagatttggccttgatattgttacagATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta Alignment from Exonerate_coding2genome ATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagatttggccttgatattgttacagATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta Alignment from GeneWise -------------------------AAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTCTGATGTTCAGATCTCACCAACATTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTT atgcagacctacccacatatgaaacagATTTGGCCTTGATATTGTTACAGATAAATCAAACCTTCTCGTCTTCAGAACAAATGGTATTTTTGATGTTCAGATCTCACCGACGCTACAGAGGCATAATAATGTGAATCAAATGGTGTTTCACAAAATCAGGAATGAAGATTTAATATTTgtatgacaatcttgataattgggtggtttcttttcttttttgtcccttta #### Jak2_ID6238_14 --> 0 - 1 Original Alignment GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACa cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACagtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga Alignment from CESAR GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACa cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACagtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga Alignment from Spaln_aa2Genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACAgtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga Alignment from Spaln_nt2Genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACAgtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga Alignment from Pairagon GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACAgtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga Alignment from Exonerate_protein2genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACAgtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga Alignment from Exonerate_coding2genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACAgtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga Alignment from GeneWise GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA cacaatttcatatattgatattggaatgtgacttgcgtttatccctgcagGAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACAgtgggtgtcccagcactgacatcagcattcttaaatgttgtttgggtgga #### Jak2_ID6239_15 --> 2 - 0 Original Alignment ttCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagttCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt Alignment from CESAR ttCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagttCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt Alignment from Spaln_aa2Genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagTTCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt Alignment from Spaln_nt2Genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagTTCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt Alignment from Pairagon TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagTTCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt Alignment from Exonerate_protein2genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagTTCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt Alignment from Exonerate_coding2genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagTTCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt Alignment from GeneWise TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA taatggttgtggagcttaattaacagtatcatgcttttcttcctcattagTTCTTCAGGAGAGAATACCATGGGTACCCCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCGACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAAATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGGgtaggctcatgcagcctgatgggaggggcacctgattccttggggctctt #### Jak2_ID6242_18 --> 0 - 1 Original Alignment GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGg tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGggtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc Alignment from CESAR GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGg tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGggtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc Alignment from Spaln_aa2Genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGgtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc Alignment from Spaln_nt2Genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGgtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc Alignment from Pairagon GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGgtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc Alignment from Exonerate_protein2genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGgtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc Alignment from Exonerate_coding2genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGgtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc Alignment from GeneWise GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG tgagtagtcttgaaaatgtttggcgtcctcctgttacatttcttttctagGGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACCGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCCCTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGGgtgagttgccaggcacacttgtctgaacttgacagtgttgacagcgtgtc #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccaggtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccaggtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccagGTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccagGTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccagGTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccagGTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccagGTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttagtaaaatacagcacaagaaaacatccatgagtaactttcctccccagGTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAGgtgagtaccatcccacatgtctcttgtatatggtgaactaactcaaatcg #### Jak2_ID6246_22 --> 0 - 0 Original Alignment GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg Alignment from CESAR GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg Alignment from Spaln_aa2Genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg Alignment from Spaln_nt2Genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg Alignment from Pairagon GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg Alignment from Exonerate_protein2genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg Alignment from Exonerate_coding2genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg Alignment from GeneWise GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG cttacttggcaactattcagcaagtcattcaaaccagccttctctggcagGAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAGgtaagtagcttcacagtcactcattcattctttggtgtgtccaaataatg #### Kank1_ID5459_5 --> 1 - 2 Original Alignment gTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGag agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagtTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGaggtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc Alignment from CESAR gTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGag agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagtTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGaggtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc Alignment from Spaln_aa2Genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACACCATTGGGTACCCT---CCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagTTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGgtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc Alignment from Spaln_nt2Genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTG---ACACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagTTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGgtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc Alignment from Pairagon GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTG---ACACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagTTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGgtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc Alignment from Exonerate_protein2genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagTTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGgtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc Alignment from Exonerate_coding2genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagTTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGgtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc Alignment from GeneWise GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcaccctgcatctcctcttcattcctgttctttctagTTATGAGACAACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACAACACCATCGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGAGGAATGGCAGAAGGGCACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGgtaggctacatttcccctcccctccctgattccttccctgtgtggggtgc #### Kank1_ID5460_6 --> 1 - 0 Original Alignment gTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagaTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg Alignment from CESAR gTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagaTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg Alignment from Spaln_aa2Genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagATATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg Alignment from Spaln_nt2Genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagATATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg Alignment from Pairagon GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagATATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg Alignment from Exonerate_protein2genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagATATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg Alignment from Exonerate_coding2genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagATATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg Alignment from GeneWise GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG acataccttgagttttgtgtgtttttttacatcttcacttctgtgtccagATATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtaagtctgcacagtaagagcgatgcgccagctttgcagcatggctccgg #### Kank1_ID5464_10 --> 0 - 0 Original Alignment GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc Alignment from CESAR GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc Alignment from Spaln_aa2Genome GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc Alignment from Spaln_nt2Genome GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc Alignment from Pairagon GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc Alignment from Exonerate_protein2genome GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc Alignment from Exonerate_coding2genome GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc Alignment from GeneWise GATGGCAGCACCGCTCTCTCCATAGCCCTGGAAGCTGGACACAAGGACATTGCCGTTCTTCTGTACGCCCACCTCAACTTCTCGAAAGCCCAGTCCCCG tactcagccgggcctgttgtctacattttacacttggattttttttatagGATGGCAGTACTGCTCTCTCTATAGCCCTGGAAGCTGGACATAAGGACATTGCCATTCTCCTGTATGCCCACCTCAACTTCTCAAAAGCCCAGTCCCCGgtaggtagcaggcatgtggcaattacaagtgtgatggaattcccatgctc #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagtGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagtGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagTGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagTGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagTGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagTGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagTGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacttaacttccgagtgcttctgtcctggcagTGAGATCAGCGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgaggaggcatgctcaggggacagatgagatatggatgcaggctccaag #### Kat5_ID1112_10 --> 0 - 0 Original Alignment AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc Alignment from CESAR AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc Alignment from Spaln_aa2Genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc Alignment from Spaln_nt2Genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc Alignment from Pairagon AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc Alignment from Exonerate_protein2genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc Alignment from Exonerate_coding2genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc Alignment from GeneWise AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG taactcaacagtaccctaaaggattgattcaacagtataccttctcctagAGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTATGTAATGACAGAGTATGACTGCAAAGGCTTCCACATCGTGGGCTACTTCTCCAAGgtgagtactcatccaggctatccctccctcagccttacccctaacctggc #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAATTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg Alignment from CESAR AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg Alignment from Pairagon AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg Alignment from Exonerate_protein2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg Alignment from Exonerate_coding2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg Alignment from GeneWise AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccaggattgtctcacactcacttgatttctttttgtgtaattttagAATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtatgtctttaggagcagagagggaagctgggaaagggggagtgggcttg #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAggtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAggtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGggtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGggtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGGgtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGGgtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGGgtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGGgtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGGgtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG gaagtgagtcaggtatactgggtctgctctttgatttccatctcttacagGAATGTCCCAGCGGAATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGGGgtgagccgacaggcatccaagaggtaacagctgcccacaggctggagggg #### Kcnip2_ID9609_3 --> 2 - 1 Original Alignment caTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAg tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagcgTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAggtaagctactctcctggttggggccggatggggatacttgcgtgggggga Alignment from CESAR caTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAg tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagcgTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAggtaagctactctcctggttggggccggatggggatacttgcgtgggggga Alignment from Spaln_aa2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagCGTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAGgtaagctactctcctggttggggccggatggggatacttgcgtgggggga Alignment from Spaln_nt2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagCGTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAGgtaagctactctcctggttggggccggatggggatacttgcgtgggggga Alignment from Pairagon CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagCGTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAGgtaagctactctcctggttggggccggatggggatacttgcgtgggggga Alignment from Exonerate_protein2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagCGTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAGgtaagctactctcctggttggggccggatggggatacttgcgtgggggga Alignment from Exonerate_coding2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagCGTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAGgtaagctactctcctggttggggccggatggggatacttgcgtgggggga Alignment from GeneWise CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG tcaagtcttgctcttctgcccccttcttcctattcttggttgctcggcagCGTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCACTGGACCCAGgtaagctactctcctggttggggccggatggggatacttgcgtgggggga #### Kcnip2_ID9610_2 --> 2 - 1 Original Alignment gcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAa ggggcagtgggagttaacctgccttccttctctctccctatttctttcaggcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAagtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc Alignment from CESAR gcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAa ggggcagtgggagttaacctgccttccttctctctccctatttctttcaggcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAagtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc Alignment from Spaln_aa2Genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA ggggcagtgggagttaacctgccttccttctctctccctatttctttcagGCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc Alignment from Spaln_nt2Genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA ggggcagtgggagttaacctgccttccttctctctccctatttctttcagGCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc Alignment from Pairagon GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA ggggcagtgggagttaacctgccttccttctctctccctatttctttcagGCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc Alignment from Exonerate_protein2genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA ggggcagtgggagttaacctgccttccttctctctccctatttctttcagGCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc Alignment from Exonerate_coding2genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA ggggcagtgggagttaacctgccttccttctctctccctatttctttcagGCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc Alignment from GeneWise GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA ggggcagtgggagttaacctgccttccttctctctccctatttctttcagGCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtgggtgcctcacccatgcttttaggggtggggcatgcctgcgtgagtgc #### Kcnk7_ID1212_2 --> 2 - 1 Original Alignment gtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTg caggggcagccaactcaaaagcttgctgataatacatattctattcataggtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTggtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat Alignment from CESAR gtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTg caggggcagccaactcaaaagcttgctgataatacatattctattcataggtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTggtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat Alignment from Spaln_aa2Genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG caggggcagccaactcaaaagcttgctgataatacatattctattcatagGTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat Alignment from Spaln_nt2Genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG caggggcagccaactcaaaagcttgctgataatacatattctattcatagGTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat Alignment from Pairagon GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG caggggcagccaactcaaaagcttgctgataatacatattctattcatagGTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat Alignment from Exonerate_protein2genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG caggggcagccaactcaaaagcttgctgataatacatattctattcatagGTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat Alignment from Exonerate_coding2genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG caggggcagccaactcaaaagcttgctgataatacatattctattcatagGTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat Alignment from GeneWise GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG caggggcagccaactcaaaagcttgctgataatacatattctattcatagGTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCCGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTCCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTTCTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtgagtccagaaaacagaaggctagggagggtttggacaacaactcccat #### Kdm2a_ID504_16 --> 0 - 2 Original Alignment AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAAtg tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAAtggtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca Alignment from CESAR AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAAtg tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAAtggtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca Alignment from Spaln_aa2Genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATGgtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca Alignment from Spaln_nt2Genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATGgtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca Alignment from Pairagon AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATGgtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca Alignment from Exonerate_protein2genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATGgtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca Alignment from Exonerate_coding2genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATGgtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca Alignment from GeneWise AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG tgttatgagaaaaaaaggtgggtagtgtttagcgtttacatcgattctagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAACCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAGAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCAGCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGTTGCAGGCCATCACAGCCTCCTCTGCTAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGACGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATGgtgggcagggatgcagaggcagcaggtaggtgacagggcttctgtgtgca #### Kdm2a_ID510_11 --> 2 - 0 Original Alignment atATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagatATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg Alignment from CESAR atATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagatATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg Alignment from Spaln_aa2Genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg Alignment from Spaln_nt2Genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg Alignment from Pairagon ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg Alignment from Exonerate_protein2genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg Alignment from Exonerate_coding2genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg Alignment from GeneWise ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG cttttccacttgttgataagctagagcatgacccttgtctttttctgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGTCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGTCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAGgtatgttgcctttgatgagtgcagaaaagtcaagtttcttaatttggagg #### Kdm2a_ID511_10 --> 0 - 1 Original Alignment GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGggtgggcttgattccatgaacttataagacagtctagagctgacaatatac Alignment from CESAR GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGggtgggcttgattccatgaacttataagacagtctagagctgacaatatac Alignment from Spaln_aa2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGGgtgggcttgattccatgaacttataagacagtctagagctgacaatatac Alignment from Spaln_nt2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGGgtgggcttgattccatgaacttataagacagtctagagctgacaatatac Alignment from Pairagon GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGGgtgggcttgattccatgaacttataagacagtctagagctgacaatatac Alignment from Exonerate_protein2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGGgtgggcttgattccatgaacttataagacagtctagagctgacaatatac Alignment from Exonerate_coding2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGGgtgggcttgattccatgaacttataagacagtctagagctgacaatatac Alignment from GeneWise GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaattgtcattgcctcattttctcacttatttattgcctcccagGTTCCTAATAAATTCCGTTACCCATTTTATTACGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCACTTAGCATGGgtgggcttgattccatgaacttataagacagtctagagctgacaatatac #### Kif11_ID7314_4 --> 1 - 0 Original Alignment aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagaTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa Alignment from CESAR aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagaTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa Alignment from Spaln_aa2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa Alignment from Spaln_nt2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa Alignment from Pairagon ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa Alignment from Exonerate_protein2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa Alignment from Exonerate_coding2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa Alignment from GeneWise ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatctgctgtttgacttagtgtttttctgtctctctgctgtactttcagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaattacccagctaaa #### Kif11_ID7322_12 --> 0 - 0 Original Alignment GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc Alignment from CESAR GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc Alignment from Spaln_aa2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc Alignment from Spaln_nt2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc Alignment from Pairagon GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc Alignment from Exonerate_protein2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc Alignment from Exonerate_coding2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc Alignment from GeneWise GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acatttttttcttctgattaataaagaatcccccacctcttctcccacagGCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgagtcctttgcttgtattaaaaatattgaagggtaggtagaggtgtcc #### Kif11_ID7329_19 --> 0 - 1 Original Alignment TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAg cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAggtattctagctttatctttgttttgctttgatgtggttttgttgcggttt Alignment from CESAR TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAg cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAggtattctagctttatctttgttttgctttgatgtggttttgttgcggttt Alignment from Spaln_aa2Genome TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAG cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAGgtattctagctttatctttgttttgctttgatgtggttttgttgcggttt Alignment from Spaln_nt2Genome TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAG cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAGgtattctagctttatctttgttttgctttgatgtggttttgttgcggttt Alignment from Pairagon TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAG cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAGgtattctagctttatctttgttttgctttgatgtggttttgttgcggttt Alignment from Exonerate_protein2genome TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAG cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAGgtattctagctttatctttgttttgctttgatgtggttttgttgcggttt Alignment from Exonerate_coding2genome TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAG cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAGgtattctagctttatctttgttttgctttgatgtggttttgttgcggttt Alignment from GeneWise TTTGTAAATGGCTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGAACAGAGCGCAGCTGTTGCGAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCCGATGAAGAAAGCTGTAAAGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTGAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAG cgaaagtgcttacaaatttcgcaatggagccgctgtgtctttacttatagTTTGTAAATAGTTGTTGTAAAGCTTCAAGTTCGGAGATCACTAAGAAAGTAAGAGACCAGAGCGCAGCTGTCGCAAACCAGCACAGCTCCTTTGTTGCTCAGATGACTTCTGATGAAGAAAGCTGTAAGGCAGGAAGCCTGGAGCTTGATAAAACTATAAAGACTGGGTTAACAAAGCTAAATTGCTTTCTGAAACAGGATCTGAAACTAGATATCCCAACAGgtattctagctttatctttgttttgctttgatgtggttttgttgcggttt #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagtCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTgagtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagtCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTgagtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagTCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTGAgtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagTCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTGAgtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagTCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTGAgtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagTCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTGAgtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagTCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTGAgtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatatggaatgataatacttgaacacctgtgttcaatttctagTCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTCACACGAGTTAGTGAgtgagctgaaacattttttaaattggagttatttcgaaatgaaaaatttt #### Kif20b_ID7007_12 --> 0 - 0 Original Alignment GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGAA---GTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc Alignment from CESAR GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGAA---GTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc Alignment from Spaln_aa2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGAA---GTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc Alignment from Spaln_nt2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGA---AGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc Alignment from Pairagon GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGA---AGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc Alignment from Exonerate_protein2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGAA---GTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc Alignment from Exonerate_coding2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGAA---GTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc Alignment from GeneWise GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG agaagttatttccttttctcttgtaaaaacagctgctgttcgccccttagGTCTATGTTCCAGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAATAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGAA---GTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTGGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAGgtaggctttagaaccttctggacttacttgttttgaggttaggaatcatc #### Kif20b_ID7010_15 --> 0 - 1 Original Alignment GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCa gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCagtatgtgcatgtattctactcttatttggttttttatgcatacataaaag Alignment from CESAR GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCa gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCagtatgtgcatgtattctactcttatttggttttttatgcatacataaaag Alignment from Spaln_aa2Genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCAgtatgtgcatgtattctactcttatttggttttttatgcatacataaaag Alignment from Spaln_nt2Genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCAgtatgtgcatgtattctactcttatttggttttttatgcatacataaaag Alignment from Pairagon GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCAgtatgtgcatgtattctactcttatttggttttttatgcatacataaaag Alignment from Exonerate_protein2genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCAgtatgtgcatgtattctactcttatttggttttttatgcatacataaaag Alignment from Exonerate_coding2genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCAgtatgtgcatgtattctactcttatttggttttttatgcatacataaaag Alignment from GeneWise GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA gtattgaagtccactgttaatgttagacgattgtccttcttgtattgaagGAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTGAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTGAAATTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAGAACAGAGAGAGCAgtatgtgcatgtattctactcttatttggttttttatgcatacataaaag #### Kif20b_ID7011_16 --> 2 - 0 Original Alignment acTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ttttttttagatacatagactcttgttatgctcttcctctttctctgcagacTCTTTGGTTCAGGCACTCAAGACATCAAGTAAAgtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg Alignment from CESAR acTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ttttttttagatacatagactcttgttatgctcttcctctttctctgcagacTCTTTGGTTCAGGCACTCAAGACATCAAGTAAAgtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg Alignment from Spaln_aa2Genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ttttttttagatacatagactcttgttatgctcttcctctttctctgcagACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAAgtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg Alignment from Spaln_nt2Genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ttttttttagatacatagactcttgttatgctcttcctctttctctgcagACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAAgtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg Alignment from Pairagon ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ttttttttagatacatagactcttgttatgctcttcctctttctctgcagACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAAgtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg Alignment from Exonerate_protein2genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ttttttttagatacatagactcttgttatgctcttcctctttctctgcagACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAAgtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg Alignment from Exonerate_coding2genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG ttttttttagatacatagactcttgttatgctcttcctctttctctgcagACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAAgtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg Alignment from GeneWise ttttttttagatacatagactcttgttatgctcttcctctttctctgcagactctttggttcaggcactcaagacatcaagtaaagtaggttaaattttgcttcatcttgacaggaatataatgagcaaataagg #### Kif20b_ID7021_26 --> 0 - 0 Original Alignment GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa Alignment from CESAR GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa Alignment from Spaln_aa2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa Alignment from Spaln_nt2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa Alignment from Pairagon GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa Alignment from Exonerate_protein2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa Alignment from Exonerate_coding2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa Alignment from GeneWise GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG tgttttttaaattaaacatagttctcttctctcctatgtttcccttctagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGACTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCCAGGAACACAGCAGAGgtaaccattcagtaatgcaaccagttctttgctctcttaacctgctacaa #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Exonerate_coding2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from GeneWise AGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggatgaagAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggctcaac Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcatcag Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggctcaac Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggctcaac Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggctcaac Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggctcaac Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggctcaac Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggctcaac #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagtCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagtCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from Exonerate_coding2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG gggtgcatgtttggctgaatattagaccagcatcctgtcggaatccctagTCCCACAGTCAACACCACTTTGCGAAGCTTGGGTGCCCTGTACTGGCGCCAGGGCAAGTTGGAAGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtgagtctttcattgcggaggaggataagtagagacctacgagacttcat #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Exonerate_coding2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag #### Ldb1_ID9698_2 --> 2 - 2 Original Alignment gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg gagcacccccctctagcttaacactgtaacttaaaacttgtattttttaggtTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGgggtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga Alignment from CESAR gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg gagcacccccctctagcttaacactgtaacttaaaacttgtattttttaggtTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGgggtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga Alignment from Spaln_aa2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcacccccctctagcttaacactgtaacttaaaacttgtattttttagGTTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGGGgtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga Alignment from Spaln_nt2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcacccccctctagcttaacactgtaacttaaaacttgtattttttagGTTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGGGgtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga Alignment from Pairagon GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcacccccctctagcttaacactgtaacttaaaacttgtattttttagGTTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGGGgtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga Alignment from Exonerate_protein2genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcacccccctctagcttaacactgtaacttaaaacttgtattttttagGTTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGGGgtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga Alignment from Exonerate_coding2genome GGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcacccccctctagcttaacactgtaacttaaaacttgtattttttaGGTTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGGGgtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga Alignment from GeneWise TCAGTGGGCTGTGCCTGTCCTGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG cactgtaacttaaaacttgtatttttta---------------------GGTTGTTCCTCAAAGTCGTTCGAACTGTACTCCCCAAAGGAACCTCCAAACGGCAATGCCTTCCCTCCTTTCCACCCTGGCACCATGCTGGATCGGGATGTGGGgtagcctctttcctttttcctggtcctcgttagacaggaaactgcctgga #### Lgals12_ID2190_3 --> 1 - 0 Original Alignment gTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccaggTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag Alignment from CESAR gTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccaggTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag Alignment from Spaln_aa2Genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccagGTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag Alignment from Spaln_nt2Genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccagGTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag Alignment from Pairagon GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccagGTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag Alignment from Exonerate_protein2genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccagGTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag Alignment from Exonerate_coding2genome GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccagGTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag Alignment from GeneWise GTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAG tttaggattgatttctgtaggcactcaactatactggcctctcttcccagGTTTCAGGTTGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTTGCCTTCCGTTTCAGCCCTCAATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGACTCTGGCAAAAAGAGATCCAGTGGCCAGGGGTTGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCTCTTTGAGAACGAAGAGGTGAAGgtacctaggaggttgtgtgtgcagcaggcagtccgaagctggcgctttag #### Lgi1_ID7583_7 --> 2 - 1 Original Alignment aaTTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAg aggtgtagtattagcttacattcatccactatttcctcacctgtttacagaaTTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGggtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt Alignment from CESAR aaTTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAg aggtgtagtattagcttacattcatccactatttcctcacctgtttacagaaTTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGggtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt Alignment from Spaln_aa2Genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG aggtgtagtattagcttacattcatccactatttcctcacctgtttacagAATTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGGgtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt Alignment from Spaln_nt2Genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG aggtgtagtattagcttacattcatccactatttcctcacctgtttacagAATTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGGgtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt Alignment from Pairagon AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG aggtgtagtattagcttacattcatccactatttcctcacctgtttacagAATTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGGgtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt Alignment from Exonerate_protein2genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG aggtgtagtattagcttacattcatccactatttcctcacctgtttacagAATTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGGgtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt Alignment from Exonerate_coding2genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG aggtgtagtattagcttacattcatccactatttcctcacctgtttacagAATTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGGgtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt Alignment from GeneWise AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG aggtgtagtattagcttacattcatccactatttcctcacctgtttacagAATTTGCAAAGTCCCAAGACCTACCTTATCAGTTACTGTCCATAGACACTTTTTCTTATTTGAATGATGTATATGTCGTTATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGATCATGTAGAGAAGACCTTCCGGAATTATGACAACATTACGGgtaactaaaaaaagaacctaacaatactaagcagaacattaaactatttt #### Lipa_ID6937_6 --> 0 - 0 Original Alignment GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG aacaccgggttgaaatgctgacctattctttcttctttactgttaaccagGACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCATGTTTGCACCCACGCCATCATGAAGGAGCTTTGTGCCAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGgtacgtagatatgacctatggatatgcttatttgtgtgagaaatgccaac Alignment from CESAR GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG aacaccgggttgaaatgctgacctattctttcttctttactgttaaccagGACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCATGTTTGCACCCACGCCATCATGAAGGAGCTTTGTGCCAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGgtacgtagatatgacctatggatatgcttatttgtgtgagaaatgccaac Alignment from Spaln_aa2Genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG aacaccgggttgaaatgctgacctattctttcttctttactgttaaccagGACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCATGTTTGCACCCACGCCATCATGAAGGAGCTTTGTGCCAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGgtacgtagatatgacctatggatatgcttatttgtgtgagaaatgccaac Alignment from Spaln_nt2Genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG aacaccgggttgaaatgctgacctattctttcttctttactgttaaccagGACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCATGTTTGCACCCACGCCATCATGAAGGAGCTTTGTGCCAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGgtacgtagatatgacctatggatatgcttatttgtgtgagaaatgccaac Alignment from Pairagon GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG aacaccgggttgaaatgctgacctattctttcttctttactgttaaccagGACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCATGTTTGCACCCACGCCATCATGAAGGAGCTTTGTGCCAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGgtacgtagatatgacctatggatatgcttatttgtgtgagaaatgccaac Alignment from Exonerate_protein2genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG aacaccgggttgaaatgctgacctattctttcttctttactgttaaccagGACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCATGTTTGCACCCACGCCATCATGAAGGAGCTTTGTGCCAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGgtacgtagatatgacctatggatatgcttatttgtgtgagaaatgccaac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG aacaccgggttgaaatgctgacctattctttcttctttactgttaaccagGACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCATGTTTGCACCCACGCCATCATGAAGGAGCTTTGTGCCAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGgtacgtagatatgacctatggatatgcttatttgtgtgagaaatgccaac #### Lipm_ID6883_3 --> 2 - 2 Original Alignment gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag caagaagagcagagaacactcaaccagttcatgggagtgtcctattttaggaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCaggtgagagaacactttgagggttgaggtagataccaacatgccctaaagca Alignment from CESAR gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag caagaagagcagagaacactcaaccagttcatgggagtgtcctattttaggaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCaggtgagagaacactttgagggttgaggtagataccaacatgccctaaagca Alignment from Spaln_aa2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG caagaagagcagagaacactcaaccagttcatgggagtgtcctattttagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAGgtgagagaacactttgagggttgaggtagataccaacatgccctaaagca Alignment from Spaln_nt2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG caagaagagcagagaacactcaaccagttcatgggagtgtcctattttagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAGgtgagagaacactttgagggttgaggtagataccaacatgccctaaagca Alignment from Pairagon GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG caagaagagcagagaacactcaaccagttcatgggagtgtcctattttagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAGgtgagagaacactttgagggttgaggtagataccaacatgccctaaagca Alignment from Exonerate_protein2genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG caagaagagcagagaacactcaaccagttcatgggagtgtcctattttagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAGgtgagagaacactttgagggttgaggtagataccaacatgccctaaagca Alignment from Exonerate_coding2genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG caagaagagcagagaacactcaaccagttcatgggagtgtcctattttagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAGgtgagagaacactttgagggttgaggtagataccaacatgccctaaagca Alignment from GeneWise GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG caagaagagcagagaacactcaaccagttcatgggagtgtcctattttagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAGgtgagagaacactttgagggttgaggtagataccaacatgccctaaagca #### Lipm_ID6886_6 --> 0 - 0 Original Alignment GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca Alignment from CESAR GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca Alignment from Spaln_aa2Genome GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca Alignment from Spaln_nt2Genome GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca Alignment from Pairagon GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca Alignment from Exonerate_protein2genome GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca Alignment from Exonerate_coding2genome GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca Alignment from GeneWise GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctccctgagtatcttgtcatggacattgctttcctccatccgcctgcagGTATTATTCGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTTTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAACATCATCTTACTCCTAGGAGGTTTTAACACAAACAATACGAACATGgtaggcgggcacattatctcctaaggcagagctaagagttttgcatccca #### Lipn_ID6870_2 --> 0 - 1 Original Alignment AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAg ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAggtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc Alignment from CESAR AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAg ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAggtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc Alignment from Spaln_aa2Genome AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAG ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAGgtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc Alignment from Spaln_nt2Genome AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAG ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAGgtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc Alignment from Pairagon AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAG ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAGgtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc Alignment from Exonerate_protein2genome AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAG ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAGgtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc Alignment from Exonerate_coding2genome AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAG ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAGgtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc Alignment from GeneWise AGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAG ctggtgtttcctgaaaggaggaaccacacaatcccttcttctccgagcagAGTGAAATAATCATGTACAATGGCTACCCCAGTGAGGAGTATGATGTCACCACCGCAGATGGATACATTCTTGCCATAAACAGAATCCCCCATGGGAGAGCACAGACTGGGCAGACAGgtgagcgagatgtgtcttttggggagagagagacatgacaaaaataacgc #### Lipn_ID6876_8 --> 0 - 0 Original Alignment CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca Alignment from CESAR CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca Alignment from Spaln_aa2Genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca Alignment from Spaln_nt2Genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca Alignment from Pairagon CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca Alignment from Exonerate_protein2genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca Alignment from Exonerate_coding2genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca Alignment from GeneWise CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgagactcactgtcattctcacgatcctttcactacattgttctactcagCTTTACCGTTCTGACGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGgtgagtcatggagagactgactgtgggatagggttttgagaaatttgaca #### Lipo1_ID6829_4 --> 1 - 1 Original Alignment tTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTg aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagtTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAggtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc Alignment from CESAR tTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTg aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagtTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAggtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc Alignment from Spaln_aa2Genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagTTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAGgtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc Alignment from Spaln_nt2Genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagTTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAGgtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc Alignment from Pairagon TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagTTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAGgtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc Alignment from Exonerate_protein2genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagTTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAGgtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc Alignment from Exonerate_coding2genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagTTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAGgtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc Alignment from GeneWise TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG aaatgataaaatatgacctcccagcttcacatttccctcctcccttccagTTTTGATCAAATGCTAAAATATGACCTCCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTAGgtaatcagaaaaggccaatgcccaaatttgtatgctgaagagtgtgcgtc #### Lipo1_ID6830_3 --> 2 - 2 Original Alignment ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTaggtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa Alignment from CESAR ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTaggtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa Alignment from Spaln_aa2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGgtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa Alignment from Spaln_nt2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGgtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa Alignment from Pairagon CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGgtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa Alignment from Exonerate_protein2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGgtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa Alignment from Exonerate_coding2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGgtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa Alignment from GeneWise CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG taagatggtaaactatttgcatgattgaagtatgtctgtgtttaccatagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAGAAACATGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGgtaaggaaccattccatgtgatttctacttttagtttaatggttaaataa #### Loxl4_ID8569_6 --> 0 - 1 Original Alignment CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAggtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from CESAR CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAggtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Spaln_aa2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Spaln_nt2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Pairagon CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Exonerate_protein2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from Exonerate_coding2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt Alignment from GeneWise CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG aggagcccctccctgaggcccacctgtggggtgatgcttctcggccccagCAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGTGTCGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGGGCCCAGTTGGGACAAGgtgagtaaagaggttcagggtgtctaaaagggcctggaggcaccacgagt #### Lpxn_ID3470_3 --> 0 - 2 Original Alignment GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACag atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACaggtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta Alignment from CESAR GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACag atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACaggtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta Alignment from Spaln_aa2Genome GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACAGgtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta Alignment from Spaln_nt2Genome GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACAGgtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta Alignment from Pairagon GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACAGgtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta Alignment from Exonerate_protein2genome GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACAGgtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta Alignment from Exonerate_coding2genome GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACAGgtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta Alignment from GeneWise GTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG atccaaacacaaatgccatttgtcattacattcggttccttcttttacagGTGCAGCTCGTGTATGCAACCAATATACAGGAGCCCAATGTCTACAGgtgagatttggtgtcaaataaataactacatgattaaaagttatcaggta #### Lpxn_ID3477_8 --> 2 - 0 Original Alignment gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttaggcTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat Alignment from CESAR gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttaggcTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat Alignment from Spaln_aa2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttagGCTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat Alignment from Spaln_nt2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttagGCTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat Alignment from Pairagon GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttagGCTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat Alignment from Exonerate_protein2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttagGCTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat Alignment from Exonerate_coding2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttagGCTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat Alignment from GeneWise GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagctttagacagcccagactaacatctgtttttaacccttttagGCTTCCATGAGAAGGACAAGAAGCCATACTGCCGAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTGGCACCCAGAGTGCTTTGTGTGTGGGgtaagtatgctcagttgccttcagttttaaggaaaattgaagagatttat #### Lrp5_ID110_14 --> 0 - 2 Original Alignment CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgggtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca Alignment from CESAR CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgggtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca Alignment from Spaln_aa2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca Alignment from Spaln_nt2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca Alignment from Pairagon CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca Alignment from Exonerate_protein2genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca Alignment from Exonerate_coding2genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca Alignment from GeneWise CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG gctctggggcaatggcagcgtggtgctatgctcagaactgtcacccctagCCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtatgtagccctagggagggatgtgtgaggactgcaacccgcccacacca #### Lrp5_ID112_12 --> 2 - 1 Original Alignment gtCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCc tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagatCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCcgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga Alignment from CESAR gtCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCc tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagatCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCcgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga Alignment from Spaln_aa2Genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagATCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCCgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga Alignment from Spaln_nt2Genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagATCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCCgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga Alignment from Pairagon GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagATCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCCgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga Alignment from Exonerate_protein2genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagATCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCCgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga Alignment from Exonerate_coding2genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagATCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCCgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga Alignment from GeneWise GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC tcttttgctcacatatgtgctatgtcccacctcctcttttctgattgcagATCAGGAGCGCATGGTGATAGCTGATGATCTGCCCTACCCATTTGGCCTGACCCAATATAGCGATTACATCTATTGGACTGACTGGAACCTGCATAGCATTGAATGGGCAGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTTGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGACTCAATGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGTTGTGCCTCACCATCCCAGGAGGCCACCGCTGTGGCTGTGCCTCGCACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCCgtggtcgccttgattcccacttgctgcatgcatcaggctttagcccttga #### Lrp5_ID115_9 --> 2 - 0 Original Alignment gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcaggaACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc Alignment from CESAR gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcaggaACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc Alignment from Spaln_aa2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc Alignment from Spaln_nt2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc Alignment from Pairagon GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc Alignment from Exonerate_protein2genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc Alignment from Exonerate_coding2genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc Alignment from GeneWise GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tccacctttgacagactgctgtcattcattatgtattttgcttttttcagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAACAATGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTGTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCTTCAAGgtaaggggcatgaggttgtaaatacctgcagctttctatgaggccttgcc #### Ltbp3_ID1251_3 --> 2 - 0 Original Alignment tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagtgCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from CESAR tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagtgCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Spaln_aa2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Spaln_nt2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Pairagon TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Exonerate_protein2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Exonerate_coding2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from GeneWise TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagatACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGggtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from CESAR atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagatACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGggtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Pairagon ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from GeneWise ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAggtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAggtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagCCAGTGAGTGAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from Exonerate_coding2genome GAGTGACCATGGATCCACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatGATCTTTATATTTTCAGCCAGTGAGTGAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg Alignment from GeneWise GACCATGGATCCACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG gggagggcttgtggtagaatcagggaggaaaatgatctttatattttcagccagtgagT---------------------GAAGAGCGATCAGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCTCGGCCTTACCCAGgtaagtgaggcaggggggggcgggctaaaccactgggacatatatgcatg #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagacATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGggtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctt Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagacATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGggtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctc Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctt Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctt Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctt Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctt Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctt Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcccaaggccattgggcacttttgtaatttaatatcttctagACATCGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTGTGTGAACACGCAGCCTGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGGgtaagtccagttacagtgcttctcaggaaagcagccgaatccaggccctt #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtaatgaat Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttattgc Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtaatgaat Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtaatgaat Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtaatgaat Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtaatgaat Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGGTAAGAGTCAATTGGCAGCAGGGTCAG---Ggtcagggtcatatgtaatg Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtaatgaat #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGCATCTCCACAGGCGTGTTTg cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCATCTCCACGGGCGTGATTagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCATCTCCACGGGCGTGATTagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCATCTCCACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Spaln_nt2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCATCTCCACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Pairagon GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCATCTCCACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Exonerate_protein2genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCATCTCCACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from Exonerate_coding2genome ACAGGCGTGTTTG CAGGGTCAG---Ggtcagggtcatatgtttattgcgtttccaatatccaggcttttccatgcatctccacgggcgtgattagtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc Alignment from GeneWise GCTTTCCCGTGCATCTCCACAGGCGTGTTTG cagcagggtcagggtcagggtcatatgtttattgcgtttccaatatccagGCTTTTCCATGCATCTCCACGGGCGTGATTAgtaagactagaaaaaccaaacctggtgtgggcagtggcttctcccccgcc #### Mamdc2_ID5146_7 --> 0 - 1 Original Alignment GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAg agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAggtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat Alignment from CESAR GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAg agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAggtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat Alignment from Spaln_aa2Genome GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAG agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAGgtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat Alignment from Spaln_nt2Genome GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAG agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAGgtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat Alignment from Pairagon GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAG agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAGgtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat Alignment from Exonerate_protein2genome GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAG agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAGgtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat Alignment from Exonerate_coding2genome GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAG agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAGgtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat Alignment from GeneWise GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAG agagcaagaaagtatgtaaatatatacttcttaatgtgcttactcgacagGTTATTTTTGAAGTTGCTTTCAATGGTCCCAAAGGTGGCTATGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTGCCAAAATCAGACAGgtaacacctgcttattcttcctcacttggaacatgcctgccctgccagat #### Mamdc2_ID5152_3 --> 2 - 0 Original Alignment gcCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctaggcCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct Alignment from CESAR gcCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctaggcCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct Alignment from Spaln_aa2Genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctagGCCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct Alignment from Spaln_nt2Genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctagGCCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct Alignment from Pairagon GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctagGCCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct Alignment from Exonerate_protein2genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctagGCCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct Alignment from Exonerate_coding2genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctagGCCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct Alignment from GeneWise GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagggtatggttagatgtgaattcacacatattcattttctagGCCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGTTTCGATCGCTTGCTGTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCAAAGAAATTCAAGgtgagttgggttggagaggaagatgtggaagtgtgtaacatgtgaggtct #### Map3k11_ID1208_9 --> 2 - 1 Original Alignment gtAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTg tcctggcagacatgccagcctcactccatcctgccctccctctgctccaggtAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTggtaagtgagacaaagactgatggggagataagaggtcatcagaaaagagt Alignment from CESAR gtAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTg tcctggcagacatgccagcctcactccatcctgccctccctctgctccaggtAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTggtaagtgagacaaagactgatggggagataagaggtcatcagaaaagagt Alignment from Spaln_aa2Genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTG tcctggcagacatgccagcctcactccatcctgccctccctctgctccagGTAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTGgtaagtgagacaaagactgatggggagataagaggtcatcagaaaagagt Alignment from Spaln_nt2Genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTG tcctggcagacatgccagcctcactccatcctgccctccctctgctccagGTAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTGgtaagtgagacaaagactgatggggagataagaggtcatcagaaaagagt Alignment from Pairagon GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTG tcctggcagacatgccagcctcactccatcctgccctccctctgctccagGTAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTGgtaagtgagacaaagactgatggggagataagaggtcatcagaaaagagt Alignment from Exonerate_protein2genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTG tcctggcagacatgccagcctcactccatcctgccctccctctgctccagGTAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTGgtaagtgagacaaagactgatggggagataagaggtcatcagaaaagagt Alignment from Exonerate_coding2genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTG tcctggcagacatgccagcctcactccatcctgccctccctctgctccagGTAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTGgtaagtgagacaaagactgatggggagataagaggtcatcagaaaagagt Alignment from GeneWise GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTGGGAG tcctggcagacatgccagcctcactccatcctgccctccctctgctccagGTAATCCTCCAAGGCCTAGCCCTGAGCCAGAGGAGCCATGGAAGGCTGGGCCCACAGAGCAAGGTAATAGCTCTGGGACGCCTAAACTGATTCAACGTGCATTGCTACGGGGAACTGCTCTGCTGGCTTCCCTAGGCCTCGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGTGGAGAGTCCCCAACAGCACCACCCCCTGCACAGATGCCTCCACCCTGCCCACCTGAGCTTCCCTCGACCCCTCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGAGTTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCCCTCAACGGGAAGAGACACGTGGTAAgtgagacaaagactgatggggagataagaggtcatcagaaaagagt #### Map4k2_ID1622_2 --> 0 - 1 Original Alignment GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAg atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAggtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg Alignment from CESAR GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAg atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAggtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg Alignment from Spaln_aa2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg Alignment from Spaln_nt2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg Alignment from Pairagon GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg Alignment from Exonerate_protein2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg Alignment from Exonerate_coding2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg Alignment from GeneWise GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgccccctccacactgaaattgttaatttcagGCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtgagagacctgtgtgcctcctgggaggggggtgggtg #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGggtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGggtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Pairagon GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Exonerate_coding2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from GeneWise GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG GACACCTGCTAATGAGACCAGGGTCAGCTGTCCCCTTTCTC------CAGGAGCTGGACTCCCCGGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAggtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from CESAR CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAggtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Spaln_aa2Genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Spaln_nt2Genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Pairagon CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Exonerate_protein2genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from Exonerate_coding2genome CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc Alignment from GeneWise CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcacaggatgctggctactgaccaccctcctgtgtgtttctccaccagCTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAGgtgagtgctggcaggtgtagaggcagccaggacagcactctccaaatttc #### Map4k2_ID1646_25 --> 1 - 1 Original Alignment gCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGg tgccttgcatggatggcttccagaacatgatccccactccacccttccaggCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGggtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc Alignment from CESAR gCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGg tgccttgcatggatggcttccagaacatgatccccactccacccttccaggCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGggtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc Alignment from Spaln_aa2Genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tgccttgcatggatggcttccagaacatgatccccactccacccttccagGCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGGgtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc Alignment from Spaln_nt2Genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tgccttgcatggatggcttccagaacatgatccccactccacccttccagGCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGGgtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc Alignment from Pairagon GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tgccttgcatggatggcttccagaacatgatccccactccacccttccagGCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGGgtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc Alignment from Exonerate_protein2genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tgccttgcatggatggcttccagaacatgatccccactccacccttccagGCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGGgtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc Alignment from Exonerate_coding2genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tgccttgcatggatggcttccagaacatgatccccactccacccttccagGCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGGgtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc Alignment from GeneWise GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tgccttgcatggatggcttccagaacatgatccccactccacccttccagGCGCTTTGCCCTATCCACCAAGATTCCTGACACCAAAGGCTGCCTGCAGTGCCGTGTGGgtaagggcagactgtatggggcttgggagggatgctgtgaggctgagccc #### Map4k2_ID1648_27 --> 0 - 1 Original Alignment AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTg ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTggtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg Alignment from CESAR AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTg ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTggtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg Alignment from Spaln_aa2Genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTGgtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg Alignment from Spaln_nt2Genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTGgtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg Alignment from Pairagon AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTGgtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg Alignment from Exonerate_protein2genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTGgtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg Alignment from Exonerate_coding2genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTGgtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg Alignment from GeneWise AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG ggaggtggggagcctgcagaataaacagtgtgtttggcttgatgctacagAACTTTTCCAGTCCCTTGCCAAGCCCGGCGGGGATGCTGGAGCCACTGGTGCTAGATGGAAAGGAGCTGCCCCAGGTGTGTGTGGGCACCGAGGGACCTGAGGGACCTGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTGgtaagtagcagagctgcaggaggggatgctttaaaaggtcaggggggggg #### March5_ID7303_5 --> 2 - 0 Original Alignment ggATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGA---ATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagggATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct Alignment from CESAR ggATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGA---ATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagggATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct Alignment from Spaln_aa2Genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACC---AGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagGGATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct Alignment from Spaln_nt2Genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACC---AGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagGGATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct Alignment from Pairagon GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACC---AGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagGGATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct Alignment from Exonerate_protein2genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACC---AGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagGGATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct Alignment from Exonerate_coding2genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACC---AGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagGGATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct Alignment from GeneWise GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGA---ATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG tattcctaagatttaagatttagttctatgtttatgattctctactgcagGGATTGGTTGCCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCATGTCTCTGCTACCAGAAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATCTTGgtaggatgaatttaatgttacttgtttcaagtaaaatacagatgagagct #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagcCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCaggtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagcCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCaggtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagCCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAGgtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagCCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAGgtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagCCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAGgtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagCCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAGgtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagCCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAGgtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG ggcactctgtctccccataacccttgccgttgtgtttcctgaattcgcagCCTAACCATGCCAGGATCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAGgtgagggtgctggggtagctgatgcacatatccactggcatgtcccaccc #### Mark2_ID2110_11 --> 2 - 0 Original Alignment agTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagagTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc Alignment from CESAR agTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagagTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc Alignment from Spaln_aa2Genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagAGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc Alignment from Spaln_nt2Genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagAGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc Alignment from Pairagon AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagAGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc Alignment from Exonerate_protein2genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagAGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc Alignment from Exonerate_coding2genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagAGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc Alignment from GeneWise AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG cccacacatgaaggcccaccttaactgtgggtccctgttttcctccccagAGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAGgtaagagttacctgctcttatgccctgaactgccacctgtactgtgggtc #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagttAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTggtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagttAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTggtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Pairagon TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG atctggacacagagtgtgcctctgagtcagtgtgcttcatcttctgccagTTAAGTTGTTTGAAGTCATTGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGTGgtgagtctgacactgtctcccatgttcatctctcccctctctgctcctgc #### Mark2_ID2119_3 --> 0 - 0 Original Alignment GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa Alignment from CESAR GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa Alignment from Spaln_aa2Genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa Alignment from Spaln_nt2Genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa Alignment from Pairagon GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa Alignment from Exonerate_protein2genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa Alignment from Exonerate_coding2genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa Alignment from GeneWise GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA ggctcagtctgctcaagaaagtgatctttctctgtccttttaaaccctagGTAGCTGTGAAGATCATCGACAAGACCCAGCTAAACTCCTCCAGCCTACAGAAAgtgggtccccaccctgtgcctcccatccctctctaaggacaagtccacaa #### Mgea5_ID9591_10 --> 0 - 1 Original Alignment ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAg taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAggtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa Alignment from CESAR ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAg taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAggtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa Alignment from Spaln_aa2Genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGgtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa Alignment from Spaln_nt2Genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGgtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa Alignment from Pairagon ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGgtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa Alignment from Exonerate_protein2genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGgtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa Alignment from Exonerate_coding2genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGgtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa Alignment from GeneWise ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG taaacttacagtttttgggccattccatctgaatggtaacctatccccagACGGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAAATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGgtacaggcaccaccagcaggcttctctcatccgcatatattgtcctttaa #### Mgea5_ID9592_9 --> 2 - 0 Original Alignment gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccaggtAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca Alignment from CESAR gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccaggtAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca Alignment from Spaln_aa2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca Alignment from Spaln_nt2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca Alignment from Pairagon GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca Alignment from Exonerate_protein2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca Alignment from Exonerate_coding2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca Alignment from GeneWise GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tgtttgttgctagctatgatggcctttgcctggctctcccttccccccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGGTTTACCAGGAACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtactggctcatcgtctcatcagcggctcttcatggtgctgagaatgcca #### Mgea5_ID9593_8 --> 2 - 1 Original Alignment ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa aggaggttttctaataactatctttgttccatccctggctttgtccccagctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCagtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt Alignment from CESAR ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa aggaggttttctaataactatctttgttccatccctggctttgtccccagctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCagtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt Alignment from Spaln_aa2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA aggaggttttctaataactatctttgttccatccctggctttgtccccagCTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCAgtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt Alignment from Spaln_nt2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA aggaggttttctaataactatctttgttccatccctggctttgtccccagCTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCAgtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt Alignment from Pairagon CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA aggaggttttctaataactatctttgttccatccctggctttgtccccagCTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCAgtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt Alignment from Exonerate_protein2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA aggaggttttctaataactatctttgttccatccctggctttgtccccagCTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCAgtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt Alignment from Exonerate_coding2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA aggaggttttctaataactatctttgttccatccctggctttgtccccagCTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCAgtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt Alignment from GeneWise CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA aggaggttttctaataactatctttgttccatccctggctttgtccccagCTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTGGAAAATGAAGGCAGTGACAAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTTGGTGTCCCTCATCAGTACAGCAgtagtttaagctctgggggccgggctcttgccagggtgaaagattcattt #### Mgea5_ID9596_5 --> 0 - 1 Original Alignment GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAg tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAggtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg Alignment from CESAR GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAg tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAggtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg Alignment from Spaln_aa2Genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAGgtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg Alignment from Spaln_nt2Genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAGgtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg Alignment from Pairagon GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAGgtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg Alignment from Exonerate_protein2genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAGgtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg Alignment from Exonerate_coding2genome GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAGgtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg Alignment from GeneWise GTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAG tttttgcctcttgagataagctagaaatatgtttgttctttacttcacagGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTATTTAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACGTTCCTCTTCTGCCCTACAGgtgagctatatcatgacggaatttagctagtctggggatggcttgcaagg #### Mgea5_ID9599_2 --> 2 - 2 Original Alignment ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAaggtagggttagtactgtggagcagaggggactctgggacactgagaacctg Alignment from CESAR ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAaggtagggttagtactgtggagcagaggggactctgggacactgagaacctg Alignment from Spaln_aa2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGgtagggttagtactgtggagcagaggggactctgggacactgagaacctg Alignment from Spaln_nt2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGgtagggttagtactgtggagcagaggggactctgggacactgagaacctg Alignment from Pairagon GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGgtagggttagtactgtggagcagaggggactctgggacactgagaacctg Alignment from Exonerate_protein2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGgtagggttagtactgtggagcagaggggactctgggacactgagaacctg Alignment from Exonerate_coding2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGgtagggttagtactgtggagcagaggggactctgggacactgagaacctg Alignment from GeneWise GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aactgaaccccattttgaaacaaattttttaccctgctgctgttttccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGgtagggttagtactgtggagcagaggggactctgggacactgagaacctg #### Minpp1_ID6696_2 --> 2 - 1 Original Alignment atATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAg aaattgtaacttattgctgtaacttacattcaactctttctgtccattagatATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAggtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag Alignment from CESAR atATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAg aaattgtaacttattgctgtaacttacattcaactctttctgtccattagatATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAggtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag Alignment from Spaln_aa2Genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aaattgtaacttattgctgtaacttacattcaactctttctgtccattagATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAGgtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag Alignment from Spaln_nt2Genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aaattgtaacttattgctgtaacttacattcaactctttctgtccattagATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAGgtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag Alignment from Pairagon ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aaattgtaacttattgctgtaacttacattcaactctttctgtccattagATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAGgtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag Alignment from Exonerate_protein2genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aaattgtaacttattgctgtaacttacattcaactctttctgtccattagATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAGgtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag Alignment from Exonerate_coding2genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aaattgtaacttattgctgtaacttacattcaactctttctgtccattagATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAGgtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag Alignment from GeneWise ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aaattgtaacttattgctgtaacttacattcaactctttctgtccattagATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGATTCTTCGATCATTGTGAGAAGTTTTTAACTGATGTGGAAAGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAAACTGGACCAGAAATGCAGAAAGTCTTAAAGAAAGTTGCAGCCACTCTGCAAGTGCCAATGAACAGTTTAAATGCAGgtaagattcatgctgtgtttcccttacattctgttttaagtagtttggag #### Minpp1_ID6697_3 --> 2 - 0 Original Alignment acTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagacTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga Alignment from CESAR acTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagacTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga Alignment from Spaln_aa2Genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagACTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga Alignment from Spaln_nt2Genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagACTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga Alignment from Pairagon ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagACTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga Alignment from Exonerate_protein2genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagACTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga Alignment from Exonerate_coding2genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagACTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga Alignment from GeneWise ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG aaaaaaactagtaactcacacattttaatgaatgtatcctttccccacagACTTAATTCAGGTAGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGGgtgagtattttgtttacattttttcctcatggtttttggtcattatttga #### Minpp1_ID6698_4 --> 0 - 2 Original Alignment GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAag attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAaggtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca Alignment from CESAR GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAag attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAaggtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca Alignment from Spaln_aa2Genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca Alignment from Spaln_nt2Genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca Alignment from Pairagon GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca Alignment from Exonerate_protein2genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca Alignment from Exonerate_coding2genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca Alignment from GeneWise GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG attatcagctgggactatattagaattatcactgttaattttgtttacagGTTCTGGAATACTTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtaggtggagtctttaaaaacatggagtacaagccaggcatggtggcaca #### Morn4_ID8390_2 --> 2 - 2 Original Alignment gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag ccttgaagcctccccatttcaacctgttctggccctctctccctttgtaggcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAaggtaagtattaagtcattcctttcccatctttggactggcaagactctaat Alignment from CESAR gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag ccttgaagcctccccatttcaacctgttctggccctctctccctttgtaggcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAaggtaagtattaagtcattcctttcccatctttggactggcaagactctaat Alignment from Spaln_aa2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ccttgaagcctccccatttcaacctgttctggccctctctccctttgtagGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAGgtaagtattaagtcattcctttcccatctttggactggcaagactctaat Alignment from Spaln_nt2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ccttgaagcctccccatttcaacctgttctggccctctctccctttgtagGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAGgtaagtattaagtcattcctttcccatctttggactggcaagactctaat Alignment from Pairagon GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ccttgaagcctccccatttcaacctgttctggccctctctccctttgtagGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAGgtaagtattaagtcattcctttcccatctttggactggcaagactctaat Alignment from Exonerate_protein2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ccttgaagcctccccatttcaacctgttctggccctctctccctttgtagGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAGgtaagtattaagtcattcctttcccatctttggactggcaagactctaat Alignment from Exonerate_coding2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ccttgaagcctccccatttcaacctgttctggccctctctccctttgtagGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAGgtaagtattaagtcattcctttcccatctttggactggcaagactctaat Alignment from GeneWise GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ccttgaagcctccccatttcaacctgttctggccctctctccctttgtagGCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAGgtaagtattaagtcattcctttcccatctttggactggcaagactctaat #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta #### Mrpl21_ID22_4 --> 2 - 0 Original Alignment agGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagagGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc Alignment from CESAR agGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagagGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc Alignment from Spaln_aa2Genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagAGGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc Alignment from Spaln_nt2Genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagAGGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc Alignment from Pairagon AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagAGGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc Alignment from Exonerate_protein2genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagAGGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc Alignment from Exonerate_coding2genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagAGGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc Alignment from GeneWise AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG atcctcccaagtgaacctggtgcctgtatgttttgttttggtattttcagAGGTTGTGAAGAGGGTGAATGAGCTGATTGCCACAGGCCAGTATGGCCGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCAATGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGAGTTAGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAGgtgagccacacattgtgttgtggactcagggactccagcttctagtgagc #### Ms4a15_ID3092_5 --> 0 - 0 Original Alignment TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt Alignment from CESAR TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt Alignment from Spaln_aa2Genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt Alignment from Spaln_nt2Genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt Alignment from Pairagon TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt Alignment from Exonerate_protein2genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt Alignment from Exonerate_coding2genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt Alignment from GeneWise TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG gtgacctttctcctctttgcctcttcttttggctcttttctccttggcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGGgtgtgatggcagctgtcacaaggggtgataaacccagagagatgggggtt #### Ms4a18_ID3103_2 --> 0 - 0 Original Alignment GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg Alignment from CESAR GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg Alignment from Spaln_aa2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg Alignment from Spaln_nt2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg Alignment from Pairagon GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg Alignment from Exonerate_protein2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg Alignment from Exonerate_coding2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg Alignment from GeneWise GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT cctagaccctacttgttctctcttcagacccacccttcttggtttctcagGCCATCCAGATCCTCATTGGCCTATTTCAAATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCAgtaggaacaaggctgtgtggactcctttctaagacatcagaggggaactg #### Ms4a1_ID3153_3 --> 0 - 0 Original Alignment TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat Alignment from CESAR TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat Alignment from Spaln_aa2Genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat Alignment from Spaln_nt2Genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat Alignment from Pairagon TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat Alignment from Exonerate_protein2genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat Alignment from Exonerate_coding2genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat Alignment from GeneWise TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ctctttctgtctccccccttctgcccctatgccttgtgttatctttccagTACATTATTTCAGGACCACTCCTGGCGGCTGCAGAAGAAAAAACCTCTAGGAAGAGTTTGgtaagaaatcatatgtcctttctcacatacaagacatacagccactttat #### Ms4a2_ID3239_6 --> 0 - 0 Original Alignment GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta Alignment from CESAR GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta Alignment from Spaln_aa2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta Alignment from Spaln_nt2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta Alignment from Pairagon GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta Alignment from Exonerate_protein2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta Alignment from Exonerate_coding2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta Alignment from GeneWise GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ttgggggtatactgtgatgttcacttttcctctctctcctcctccactagGAACTGGTATTGATGATGCTGTTCCTCACCATCCTGGCTTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacccaggaaatcttgactagcatacattggagaatttgtgctttatta #### Ms4a2_ID3242_3 --> 0 - 0 Original Alignment GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt Alignment from CESAR GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt Alignment from Spaln_aa2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt Alignment from Spaln_nt2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt Alignment from Pairagon GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt Alignment from Exonerate_protein2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt Alignment from Exonerate_coding2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt Alignment from GeneWise GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG caattctgagaaaataattcctaactttccgtggaccttctgtcctgtagGCAACACAAATTTTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAGGTGCTTTCACTTTATAAACTTGCATATCCCTTCTGGGGTGCAGTGCTGgtagaaacatatctgtaatcgtttctgagacaatgctatacagagatttt #### Ms4a3_ID3248_5 --> 0 - 0 Original Alignment GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa Alignment from CESAR GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa Alignment from Spaln_aa2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa Alignment from Spaln_nt2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa Alignment from Pairagon GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa Alignment from Exonerate_protein2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa Alignment from Exonerate_coding2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa Alignment from GeneWise GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tcgagttttcactctgatttctctcttgaatctttttcttccccatgaagGGCCTGGTGTCTTTAATGTTGATTCTCAGCCTGCTGGAGCTGTCTGTGACCATTTCTATCTCTGCTATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAGgtgagccagtgtgaatgtagggcaagttcggtcatctgaaaactccacaa #### Ms4a3_ID3250_3 --> 0 - 0 Original Alignment TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg Alignment from CESAR TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg Alignment from Spaln_aa2Genome TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg Alignment from Spaln_nt2Genome TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg Alignment from Pairagon TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg Alignment from Exonerate_protein2genome TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg Alignment from Exonerate_coding2genome TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg Alignment from GeneWise TTTATCAGCTCAGGATCCTTGACTGTTGCCGCAGGGAGAAACCCCACACGAATGCTG ggtcaaagactaagtgttcctttatccaacatttctgcttctttctgcagTTTATCAGCTCAGGATCCTTGACTGTTGCCACAGGGAGAAACCCCACACGAATGCTGgtaattgctgactcttcctctctctccctatgttcagatgaacagaaatg #### Ms4a4b_ID3188_2 --> 0 - 0 Original Alignment GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg Alignment from CESAR GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg Alignment from Spaln_aa2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg Alignment from Spaln_nt2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg Alignment from Pairagon GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg Alignment from Exonerate_protein2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg Alignment from Exonerate_coding2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg Alignment from GeneWise GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG agcacttttgttgtggacaatgttggttactctctccgtttctttcacagGTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATGTTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCCATAATGgtacttaatatacagtcatatataactgggaatattaataccctcttgcg #### Ms4a4d_ID3225_5 --> 0 - 0 Original Alignment AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt Alignment from CESAR AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt Alignment from Spaln_aa2Genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt Alignment from Spaln_nt2Genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt Alignment from Pairagon AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt Alignment from Exonerate_protein2genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt Alignment from Exonerate_coding2genome AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt Alignment from GeneWise AGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAG caaacatataatcttcattcattgctttattaactattcatgtttttcagAGTTTGGATGTTTTGATGATAATTTTGAATATGCTAGAATTCTGCATTGCTGTGTCTGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGgtaagctgcaactcttccttggcgacgcttggtataggcctctattgatt #### Ms4a6b_ID3213_2 --> 0 - 0 Original Alignment GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt Alignment from CESAR GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt Alignment from Spaln_aa2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt Alignment from Spaln_nt2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt Alignment from Pairagon GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt Alignment from Exonerate_protein2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt Alignment from Exonerate_coding2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt Alignment from GeneWise GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gaggttcttcttgtcattgctggtttaatttaaaattgtttttgtttcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGCATCTGTTCCCTCCAATCTACACTTCACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTATCCATTCATAGGAGCTTTGTTTgtatttagactgccgtggggaataagatggggaagaaagagaaggcagtt #### Ms4a6b_ID3214_3 --> 0 - 0 Original Alignment TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc Alignment from CESAR TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc Alignment from Spaln_aa2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc Alignment from Spaln_nt2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc Alignment from Pairagon TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc Alignment from Exonerate_protein2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc Alignment from Exonerate_coding2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc Alignment from GeneWise TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actttggacatagaaattgaactgccaatttttttcttttttttttccagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAGACTAAGTCAACGAAAATTTTGgtaagcacaagggtcatatccctgaactaatgagcacaaaaccacagggc #### Ms4a6b_ID3215_4 --> 0 - 0 Original Alignment GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag Alignment from CESAR GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag Alignment from Spaln_aa2Genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag Alignment from Spaln_nt2Genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag Alignment from Pairagon GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag Alignment from Exonerate_protein2genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag Alignment from Exonerate_coding2genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag Alignment from GeneWise GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atgcaccattttggtagaaaggtataaataccaacttcccttcctgtcagGTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGGTTTCATGGGTATCATTATCATCTCTGTCAGCCTGGCTGGATTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAGTACCATTATTACCAATTCCTGGACAGGAACGAATGCTTTGCCGCCAAGTCTGTTCTGGCTgtaaatacttctaatggctgtagtgaacgtttttagtcatgagcaaatag #### Ms4a6c_ID3197_2 --> 0 - 0 Original Alignment GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt Alignment from CESAR GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt Alignment from Spaln_aa2Genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt Alignment from Spaln_nt2Genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt Alignment from Pairagon GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt Alignment from Exonerate_protein2genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt Alignment from Exonerate_coding2genome GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt Alignment from GeneWise GCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT gggaggtctttctcaccattgctgattttttctggctctttctttgacagGCAATCCAGATCATGTGTGCTGTGACAGTGTTGGCTCTGGGAATCATTTTGTCATCTGTTCCTCCTGTCCCATATTTTAACTCAGTGTTTTCTGTCCTTTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTTgtatgtcaacttctggagggaataagatggtggaagacagaggagggagt #### Ms4a6d_ID3231_4 --> 0 - 0 Original Alignment GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca Alignment from CESAR GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca Alignment from Spaln_aa2Genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca Alignment from Spaln_nt2Genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca Alignment from Pairagon GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca Alignment from Exonerate_protein2genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca Alignment from Exonerate_coding2genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca Alignment from GeneWise GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT ttaaagtggtagtgaataatagccatatccccactcctgaccctttctagGTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCCCTGCTCTTACAGGCATTGCTATTCTCTCTGTTAGTTTGGCTGCTTTAGAGCCTGCCTTACAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCTGCTCTGACTgtaggtatttcaaaaggaaatgttccaggttttaaagatattttttgaca #### Ms4a6d_ID3233_2 --> 0 - 0 Original Alignment GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCAATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt Alignment from CESAR GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCAATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt Alignment from Spaln_aa2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCAATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt Alignment from Spaln_nt2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCAATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt Alignment from Pairagon GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCAATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt Alignment from Exonerate_protein2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCAATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt Alignment from Exonerate_coding2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCAATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt Alignment from GeneWise GTGATGGCGGCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT gtactttttgtcattgctgatttattcaagccatccctggtcactcctagGCA---------ATCCAGATCATGTGCGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTATTTgtgagtaggacttccgtggggaataaggtggcagtgcaacagaagggggt #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCaggtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCaggtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg #### Myof_ID7452_47 --> 1 - 2 Original Alignment gTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAgg ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcaggTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAgggtaagtataggaggcagagattcccacatgggggatgaaacagacccttt Alignment from CESAR gTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAgg ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcaggTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAgggtaagtataggaggcagagattcccacatgggggatgaaacagacccttt Alignment from Spaln_aa2Genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcagGTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAGGgtaagtataggaggcagagattcccacatgggggatgaaacagacccttt Alignment from Spaln_nt2Genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcagGTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAGGgtaagtataggaggcagagattcccacatgggggatgaaacagacccttt Alignment from Pairagon GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcagGTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAGGgtaagtataggaggcagagattcccacatgggggatgaaacagacccttt Alignment from Exonerate_protein2genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcagGTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAGGgtaagtataggaggcagagattcccacatgggggatgaaacagacccttt Alignment from Exonerate_coding2genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcagGTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAGGgtaagtataggaggcagagattcccacatgggggatgaaacagacccttt Alignment from GeneWise GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG ggacttgaaggtgtatactttcaaaatgcagtgtccctctcttccatcagGTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGATATCTACGTCAAAGGgtaagtataggaggcagagattcccacatgggggatgaaacagacccttt #### Myof_ID7455_44 --> 1 - 1 Original Alignment tTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTg gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagtTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTggtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg Alignment from CESAR tTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTg gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagtTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTggtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg Alignment from Spaln_aa2Genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagTTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTGgtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg Alignment from Spaln_nt2Genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagTTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTGgtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg Alignment from Pairagon TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagTTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTGgtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg Alignment from Exonerate_protein2genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagTTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTGgtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg Alignment from Exonerate_coding2genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagTTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTGgtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg Alignment from GeneWise TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgagacatgtcccttagtgtgctgtattttaaaaacattttagTTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACACAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCACCACCAGTTCTATCTGAAGATGGAAGCAGAATCCGATATGGAGGTCGAGATTACCATTTGGATGAGTTTGgtgagtaaaaaggtgtggggttgtaagcacaatataataacccatttctg #### Myof_ID7460_40 --> 0 - 0 Original Alignment ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga Alignment from CESAR ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga Alignment from Spaln_aa2Genome ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga Alignment from Spaln_nt2Genome ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga Alignment from Pairagon ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga Alignment from Exonerate_protein2genome ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga Alignment from Exonerate_coding2genome ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga Alignment from GeneWise ATCTATGACTGTGAACTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGATTTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCCGATGAGAATGAAGATCCATCTGTGGTAGGAGAGTTTAAA acagcacctctgttttaatgagaaactgatcatcttgttatctcttttagATCTATGACTGTGACCTGGAGGATGTAGCCGACTTTGAAGGCCTGACAGACCTCTCAGATACCTTCAAGCTGTACAGAGGCAAGTCTGATGAGAATGAAGATCCTTCTGTGGTAGGAGAGTTTAAAgtatgttaaaatgtgcgtggacaaatctatctacttttttttattattga #### Myof_ID7473_29 --> 0 - 0 Original Alignment GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga Alignment from CESAR GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga Alignment from Spaln_aa2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga Alignment from Spaln_nt2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga Alignment from Pairagon GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga Alignment from Exonerate_protein2genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga Alignment from Exonerate_coding2genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga Alignment from GeneWise GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT aataggggggagattattattcatcatcgagttgtttctcctctttccagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgcgcga #### Myof_ID7474_28 --> 2 - 0 Original Alignment gcTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccaggcTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac Alignment from CESAR gcTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccaggcTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac Alignment from Spaln_aa2Genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccagGCTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac Alignment from Spaln_nt2Genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccagGCTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac Alignment from Pairagon GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccagGCTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac Alignment from Exonerate_protein2genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccagGCTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac Alignment from Exonerate_coding2genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccagGCTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac Alignment from GeneWise GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG tcatatacaatgtatctcttttgggtcagacttgctgtctgtgcttccagGCTGGGAGTATGGAGTGACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCGACGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGGgtgagtggggtggtaggagagagctggaccgagtgccctgcctgcaacac #### Myof_ID7475_27 --> 0 - 1 Original Alignment AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAggtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta Alignment from CESAR AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAggtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta Alignment from Spaln_aa2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAGgtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta Alignment from Spaln_nt2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAGgtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta Alignment from Pairagon AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAGgtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta Alignment from Exonerate_protein2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAGgtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta Alignment from Exonerate_coding2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAGgtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta Alignment from GeneWise AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tgtttctcattccatctgtctgtatgtctgagcttgctgcccacccgcagAATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCGGGTTGGGAGTGGGAGGATGATGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAGgtaagaacatttgcttgcctgagtgtgagtctgcggaaaggcctcaacta #### Myof_ID7482_20 --> 2 - 0 Original Alignment ggAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagggAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg Alignment from CESAR ggAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagggAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg Alignment from Spaln_aa2Genome GGAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagGGAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg Alignment from Spaln_nt2Genome GGAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagGGAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg Alignment from Pairagon GGAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagGGAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg Alignment from Exonerate_protein2genome GGAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagGGAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg Alignment from Exonerate_coding2genome GGAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagGGAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg Alignment from GeneWise GGAACTACTATTACTACTTACCTTGGGCCCACACGAAGCCCGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTG atatgttgtccttctcaagtatccctcttcctgtccctcttctctcctagGGAACTACTATTACTACTTACCTTGGGCCCACACAAAGCCTGTGGTCACCCTGACTTCCTACTGGGAGGATATTAGTCACCGCCTGGATGCAGTGAACACTCTCCTAGTCATGGCAGAACGGCTGgtgaggtatctgtccagcatttccttttcacaggtagtatggtaagaacg #### Myof_ID7484_18 --> 0 - 0 Original Alignment GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta Alignment from CESAR GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta Alignment from Spaln_aa2Genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta Alignment from Spaln_nt2Genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta Alignment from Pairagon GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta Alignment from Exonerate_protein2genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta Alignment from Exonerate_coding2genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta Alignment from GeneWise GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ccagctgtggtccctgtctgcaggactactgactgcctggttccccccagGGAGAAGAGGTGACCTACAGAGGCAGGATCTTTGTGGAACTGAACACATTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAACCTATTTCCAGTGATGACCTTCTGGTTGTTGAGgtgagtggcagtgtgtatataacctgggacggaatgtattggagggacta #### Myof_ID7487_15 --> 0 - 2 Original Alignment TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACtg gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACtggtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt Alignment from CESAR TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACtg gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACtggtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt Alignment from Spaln_aa2Genome TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACTGgtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt Alignment from Spaln_nt2Genome TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACTGgtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt Alignment from Pairagon TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACTGgtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt Alignment from Exonerate_protein2genome TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACTGgtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt Alignment from Exonerate_coding2genome TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACTGgtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt Alignment from GeneWise TTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG gttagtgaaatcaggagaaataattaccaatgtttctcctttcctcacagTTTCCCTCCATGTGCGAAAAAATAAAACTAACAGTATATGACTGgtacattgcaagtgtgctaaattcagcattagcaagtggagcatctgagt #### Myof_ID7492_10 --> 0 - 1 Original Alignment ATTGATGTTGGATTTGTTTATGATGAACCTg ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCggtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg Alignment from CESAR ATTGATGTTGGATTTGTTTATGATGAACCTg ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCggtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg Alignment from Spaln_aa2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCGgtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg Alignment from Spaln_nt2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCGgtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg Alignment from Pairagon ATTGATGTTGGATTTGTTTATGATGAACCTG ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCGgtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg Alignment from Exonerate_protein2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCGgtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg Alignment from Exonerate_coding2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCGgtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg Alignment from GeneWise ATTGATGTTGGATTTGTTTATGATGAACCTG ctttaaaacctattcatgactttaaaaccaggaccttctctatctcttagATTGATGTTGGATTTGTTTATGATGAACCCGgtaaggaatgtcccttcatcaacttgaagtctcagtcccttctaagtctg #### Myof_ID7495_7 --> 0 - 0 Original Alignment ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg Alignment from CESAR ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg Alignment from Spaln_aa2Genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg Alignment from Spaln_nt2Genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg Alignment from Pairagon ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg Alignment from Exonerate_protein2genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg Alignment from Exonerate_coding2genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg Alignment from GeneWise ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttgcatcgcacactatacaagctttggttgcccagccccgctctgtgcagATCCGTGTCAGAGTGATCAAGGGCCGTCAGTTATGTGGCAACAACATAAGGCCTGTGGTGAAAGTTCACATCTGTGGTCAGACACACCGCACAAGAATCAAGAGAGGGAACAATCCATTCTTTGACGAGgtgagtgggttgagagtgcacagtccggggtgctcacccagtctctcctg #### Myrf_ID2717_20 --> 2 - 1 Original Alignment ttACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAg tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagtcACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAggtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from CESAR ttACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAg tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagtcACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAggtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Spaln_aa2Genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Spaln_nt2Genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Pairagon TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Exonerate_protein2genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from Exonerate_coding2genome TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg Alignment from GeneWise TTACCAAGTCAGCCTCGGGTCCAGCTCTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTCAG tgtgcagccccagagtccccctcacctcagaccctgctttctgtccacagTCACCAAGTCAGCTTCAGGTCCAGCGCTCCATGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATTGTCTGCTGCTCTCCTCCCGTCTCCAGTCCTGCCACAGATCCTGCACTTGGCCCCACACTTACTCCTGCTCCAAGCCCTAGTTCTAACCCCAAGCACTCAGgtgagtatgttttgggcaaaggtctggcaaatcccagcaaccacggggtg #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCaggtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCaggtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccctaaagtttgccctgcccccaagtgaacttttctttcctcaatacagGCCTCTAACCCAGGCCAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCACCCTGGCCGTGTGGGCATCAACACCGACCCGCCAGATGAGGCATTGGTCGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCCGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagaagaggggcagtgctgtgggtgatgagtaggacccctggaaagca #### Myrf_ID2732_6 --> 1 - 1 Original Alignment aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagaCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAggtaaaggattgactgaccggggactggagctgggcccagatctttctcaa Alignment from CESAR aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagaCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAggtaaaggattgactgaccggggactggagctgggcccagatcttgacttt Alignment from Spaln_aa2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAGgtaaaggattgactgaccggggactggagctgggcccagatctttctcaa Alignment from Spaln_nt2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAGgtaaaggattgactgaccggggactggagctgggcccagatctttctcaa Alignment from Pairagon ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAGgtaaaggattgactgaccggggactggagctgggcccagatctttctcaa Alignment from Exonerate_protein2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAGgtaaaggattgactgaccggggactggagctgggcccagatctttctcaa Alignment from Exonerate_coding2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAGgtaaaggattgactgaccggggactggagctgggcccagatctttctcaa Alignment from GeneWise ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG agggagacaaaaccatttctcatgttgcagctgttcgtcttctttcttagACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTAAATGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTACCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCCCCAGGTGCACCCTCCCCAGgtaaaggattgactgaccggggactggagctgggcccagatctttctcaa #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtggtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacaggTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtggtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG cttaatagctgtcctccaaggcccctgtcgcatttctcccatctctacagGTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGACCGACGATCGCGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTGgtagaaactcacgccaacagtggggtagagtggaggagggggaggaaacc #### Naa40_ID2078_2 --> 0 - 0 Original Alignment AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcacagAGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt Alignment from CESAR AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcacagAGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt Alignment from Spaln_aa2Genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcacagAGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt Alignment from Spaln_nt2Genome GGGAGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcaCAGAGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt Alignment from Pairagon AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcacagAGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt Alignment from Exonerate_protein2genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcacagAGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt Alignment from Exonerate_coding2genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcacagAGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt Alignment from GeneWise GGGAGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ctgaggaattggctatagcccttccagttcaacccccaatcttttcacag---AGAAAGTTGAGCAAAGCCAAAGAGAAGAAGCAGAAACGCTTGGAGGAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGGgtgagtctcagttcctctctcaacttcagctcctttctgttttgttactt #### Naaladl1_ID1446_5 --> 0 - 2 Original Alignment GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCtg gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCtggtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa Alignment from CESAR GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCtg gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCtggtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa Alignment from Spaln_aa2Genome GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCTG gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCTGgtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa Alignment from Spaln_nt2Genome GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCTG gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCTGgtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa Alignment from Pairagon GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCTG gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCTGgtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa Alignment from Exonerate_protein2genome GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCTG gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCTGgtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa Alignment from Exonerate_coding2genome GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCTG gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCTGgtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa Alignment from GeneWise GCCATTAATGCTGCCAAACATGGAGTTGTCGGAGTGCTGGTGTACACGGACCCTGGTGATATCAATGACGGGAAGAGCTTGCCTAATGAAACCTTCCCAAACTCCTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTTCCAGCCCACCCCTCTTCTTTCCGCCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCTATCGGCTTTGAGGATGCAAGAGATCTGCTCTG gggctcatgcccatctgtcacttacccaatcctgtacctttattttacagGCCATTAATGCTGCCAAACATGGAGTCGTTGGAGTGCTGGTGTACACGGACCCAGGTGATATCAATGATGGGAAGAGCTTGCCTAATGAAACTTTCCCGAACTCTTGGCGGCTGCCTCCTTCTGGTGTGGAGCGAGGCTCCTACTATGAGTATTTTGGGGACCCTCTGACCCCCTACCTCCCTGCCCACCCCTCTTCTTTTCGTCTGGATCCTCACAACACCTCAGGATTTCCCCCGATTCCCACCCAGCCCATTGGTTTTGAGGATGCAAGAGATCTGCTCTGgtgtgtttgtgcccagtatgtcctgcccctagacacttgcaggtaccgaa #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccaggtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGggtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccaggtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGggtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccagGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGGgtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccagGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGGgtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccagGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGGgtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccagGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGGgtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccagGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGGgtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaagggatgggatgaagatgtggcctctctttatgtttccttcccagGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTTAATGTCAGTGACTATAGTGAGACATTACAAAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAGCAGAACGTCAGCCTGGgtgagtacaccccaataaggaggctcagggaactctgtatccccaggtag #### Ndufb8_ID9057_4 --> 0 - 0 Original Alignment ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg Alignment from CESAR ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg Alignment from Spaln_aa2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg Alignment from Spaln_nt2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg Alignment from Pairagon ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg Alignment from Exonerate_protein2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg Alignment from Exonerate_coding2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg Alignment from GeneWise ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gaccttttgcaaggactgtttgtgaccaaaccttatttttgtgtttctagATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTTTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTGgtgggtatctcatgtgctctccgaagtacatttgcgtcctttcctgaagg #### Neurl1a_ID10157_2 --> 2 - 0 Original Alignment acTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagacTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac Alignment from CESAR acTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagacTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac Alignment from Spaln_aa2Genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagACTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac Alignment from Spaln_nt2Genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagACTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac Alignment from Pairagon ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagACTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac Alignment from Exonerate_protein2genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagACTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac Alignment from Exonerate_coding2genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagACTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac Alignment from GeneWise ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG gtctttaggtccgattacattctatgactcctcccgcgcgtggctcccagACTCCATTGGGGGTTCCTTCCCAGTGCCCTCTCACCGATGCCATCACAAGCAGAGGCATTGCCCACCTGCACTGTCAGGTGCGGGGCTCCCAGCCATGCCGCTCCTCTTCCATCCCCACACTGAGGGCTCCCAGATCCTCACGGACCTCAGCCACAAGGCTGTCAAGAGACAGGCCAGCTTTTGCAACGCCATCACCTTCAGTAACCACCCAGTGCTCACTTATGAGCAAGTCAGGTTGAAGgtaagaacccccggacccctgcctatgacctttaatctctttattgccac #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTcagtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTcagtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgggtaaggtgtatggggcaactactatgctcttgtttctctctgcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAATTGGGAGTGTGTGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCAgtaagtggccctgccctgtcctgcagtgggatgctttttgactgccagcc #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAggtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAggtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAGgtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAGgtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat Alignment from Pairagon CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAGgtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAGgtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat Alignment from Exonerate_coding2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAGgtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG actccacaccctaatcatcactcagaccgaattttgtgtgtttaattcagCTAGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCCAGCACAGgtgaggacaggcaccctggaaggtgtgtctgggcttagaggagaaggcat #### Nhlrc2_ID12131_2 --> 2 - 1 Original Alignment gcTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAg ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttaggcTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAggtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat Alignment from CESAR gcTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAg ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttaggcTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAggtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat Alignment from Spaln_aa2Genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttagGCTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAGgtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat Alignment from Spaln_nt2Genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttagGCTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAGgtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat Alignment from Pairagon GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttagGCTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAGgtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat Alignment from Exonerate_protein2genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttagGCTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAGgtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat Alignment from Exonerate_coding2genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttagGCTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAGgtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat Alignment from GeneWise GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG ttctttgttgtttcctttaattgttttaatccttttcccgtctcttttagGCTTAGAATGGCTAAACACGGAAGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTAGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTACTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAGgtaagtgcttggggattttcttgccctgttcataagcatgggaagagcat #### Nmrk1_ID4438_4 --> 2 - 2 Original Alignment tgCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATaa ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagtgCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATaagtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga Alignment from CESAR tgCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATaa ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagtgCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATaagtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga Alignment from Spaln_aa2Genome TGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATAA ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagTGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATAAgtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga Alignment from Spaln_nt2Genome TGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATAA ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagTGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATAAgtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga Alignment from Pairagon TGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATAA ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagTGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATAAgtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga Alignment from Exonerate_protein2genome TGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATAA ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagTGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATAAgtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga Alignment from Exonerate_coding2genome TGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATAA ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagTGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATAAgtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga Alignment from GeneWise TGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATTGAAGGTTTCCTTCTCTTTAATTATAA ccggaaaaaggttggtaatattaattccccaagcatctccatctttccagTGCTTGAAGCGCTAAATATGGAAAAAATGATGTCAGCAGTTTCCTGTTGGATGGAAAACCCAGGAAGCTCTGCGGGACCAGCAGCCTTGGAAAGTGCTCAAGGGGTTCCCATTTTAATTATCGAAGGTTTCCTTCTCTTTAATTATAAgtaagtcttcctactgcaataccaacttgaaagaatgtggaggtggagga #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccaggCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccaggCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Spaln_nt2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Pairagon GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from Exonerate_coding2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTACTTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG atgtagaggaaggaaaagagccttgtggttcacttttgttttccctccagGCCTCTGGACACCATATGGAATAGAAGTTACTTCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgcggccggggactgtctctgcattgtaattccaaagattagatacagg #### Noc3l_ID7657_18 --> 0 - 0 Original Alignment ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc Alignment from CESAR ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc Alignment from Spaln_aa2Genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc Alignment from Spaln_nt2Genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc Alignment from Pairagon ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc Alignment from Exonerate_protein2genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc Alignment from Exonerate_coding2genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc Alignment from GeneWise ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG caagataccttaattaattcttattcttcccttcctgtccgtttcctcagACTTTTCCCAGAACAGATCTCTTACTTGATAATGAATCTCAGGGCAGTGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGCAACGCACAGAACACTGCACTGTGGGAGCTGCACACGCTTCGGgtgagagccgtccttttttccccatccacactcctcccgtcacttacccc #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcaggtGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta Alignment from CESAR gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcaggtGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcagGTGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcagGTGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta Alignment from Pairagon GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcagGTGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcagGTGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcagGTGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta Alignment from GeneWise GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT tggcataatgaaagtgtaacaagagtgaagacgacctaatgtttctgcagGTGCCACCAACGATGGCATTGAGATTGTGCTCCACTGCCTTGATGTCATGCTAAGCAAGTGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATgtaagtaagagcataaagaggcaaggcttaggtctcatggtgtcctggta #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAggtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAggtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Pairagon -------------------------------------------------GGAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG AGAAAGCACTCTCATTTGTTTTGTTTCTAACCTTGTCACTGTCTCAGCAGGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA--------------------------------------------------- agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGTATGATAGTCCATTTGGCTTCCTTTCCTTTGTCACTGAAGACTAACTTA #### Noc3l_ID7663_12 --> 0 - 0 Original Alignment TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt Alignment from CESAR TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt Alignment from Spaln_aa2Genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt Alignment from Spaln_nt2Genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt Alignment from Pairagon TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt Alignment from Exonerate_protein2genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt Alignment from Exonerate_coding2genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt Alignment from GeneWise TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tgtttgtttctttcttgtaagttttgtttctctttcttctcctttttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtacagtgttccattctgtcaggtttggttgaatgattttgatcgaaagt #### Noc3l_ID7664_11 --> 0 - 0 Original Alignment ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat Alignment from CESAR ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat Alignment from Spaln_aa2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat Alignment from Spaln_nt2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat Alignment from Pairagon ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat Alignment from Exonerate_protein2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat Alignment from Exonerate_coding2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat Alignment from GeneWise ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG aatctttaggtgtagtaagccttgtgtgtacctgtttcatactccattagATGTTAATAACATTTTTATGCCTGCGGATCAAGGAGGTGGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGgtatggtttattttctttttcattttgtcatatattcagccttgatggat #### Noc3l_ID7670_5 --> 2 - 1 Original Alignment tcACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAg ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagtcACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAcgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg Alignment from CESAR tcACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAg ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagtcACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAcgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg Alignment from Spaln_aa2Genome TCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAG ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagTCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAACgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg Alignment from Spaln_nt2Genome TCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAG ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagTCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAACgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg Alignment from Pairagon TCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAG ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagTCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAACgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg Alignment from Exonerate_protein2genome TCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAG ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagTCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAACgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg Alignment from Exonerate_coding2genome TCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAG ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagTCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAACgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg Alignment from GeneWise TCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAAG ttttcccacggaatgttgtcatggatttgttggttttgtctgcctcttagTCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGAACgttggtggatgcgcctctgtctgataaatggttaggttgctctcagcatg #### Nrxn2_ID1733_2 --> 2 - 1 Original Alignment agGAACACCCCATGGAAg ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagagGAACACCCCATGGAAggtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc Alignment from CESAR agGAACACCCCATGGAAg ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagagGAACACCCCATGGAAggtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc Alignment from Spaln_aa2Genome AGGAACACCCCATGGAAG ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagAGGAACACCCCATGGAAGgtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc Alignment from Spaln_nt2Genome AGGAACACCCCATGGAAG ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagAGGAACACCCCATGGAAGgtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc Alignment from Pairagon AGGAACACCCCATGGAAG ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagAGGAACACCCCATGGAAGgtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc Alignment from Exonerate_protein2genome AGGAACACCCCATGGAAG ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagAGGAACACCCCATGGAAGgtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc Alignment from Exonerate_coding2genome ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagaggaacaccccatggaaggtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc Alignment from GeneWise ctcctttctgttctctccctgctgccttttcagtacatctctgcttgcagaggaacaccccatggaaggtaacaggagccctttttcattagggtgcttcatatgtccccgtgaggtc #### Nrxn2_ID1748_6 --> 0 - 0 Original Alignment CACGCAGGGATTGGACACGCTATG tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagCACGCTGGGATCGGACACGCTATGgtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc Alignment from CESAR CACGCAGGGATTGGACACGCTATG tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagCACGCTGGGATCGGACACGCTATGgtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc Alignment from Spaln_aa2Genome CACGCAGGGATTGGACACGCTATG tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagCACGCTGGGATCGGACACGCTATGgtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc Alignment from Spaln_nt2Genome CACGCAGGGATTGGACACGCTATG tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagCACGCTGGGATCGGACACGCTATGgtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc Alignment from Pairagon CACGCAGGGATTGGACACGCTATG tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagCACGCTGGGATCGGACACGCTATGgtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc Alignment from Exonerate_protein2genome CACGCAGGGATTGGACACGCTATG tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagCACGCTGGGATCGGACACGCTATGgtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc Alignment from Exonerate_coding2genome CACGCAGGGATTGGACACGCTATG tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagCACGCTGGGATCGGACACGCTATGgtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc Alignment from GeneWise tcttgctttcttgatttttgacatcctttctgttgctacccaccccccagcacgctgggatcggacacgctatggtgctgaaactgcattatctggtagttatcactctgattgtcttcccatc #### Nrxn2_ID1752_8 --> 0 - 1 Original Alignment GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAg gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAggtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc Alignment from CESAR GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAg gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAggtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc Alignment from Spaln_aa2Genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAG gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAGgtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc Alignment from Spaln_nt2Genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAG gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAGgtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc Alignment from Pairagon GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAG gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAGgtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc Alignment from Exonerate_protein2genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAG gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAGgtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc Alignment from Exonerate_coding2genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAG gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAGgtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc Alignment from GeneWise GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAG gacccatggctgcttccgcttccttcccgcagatgttgtcttctgtacagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGCGCACTGGTTCCATCTGCCTGGACTTCAGGACCACTGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGGCGGCAGGCTGGGGCTGGGGTAGGCAGTCACAGTTCCACCCAGAGGGCTGACTACTTTGCCATGGAGCTATTGGATGGCTACCTTCACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGATGGGCGCAAAGgtgagtaggcctctagaccttccttcccctggccattcttttctgcttgc #### Nrxn2_ID1754_10 --> 2 - 1 Original Alignment agGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCg ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagagGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTCA---AGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCggtgagtaccctggtttggcctcctggcccgactctgacctacactcccct Alignment from CESAR agGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCg ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagagGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTCA---AGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCggtgagtaccctggtttggcctcctggcccgactctgacctacactcccct Alignment from Spaln_aa2Genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagAGGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTCA---AGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCGgtgagtaccctggtttggcctcctggcccgactctgacctacactcccct Alignment from Spaln_nt2Genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagAGGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTC---AAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCGgtgagtaccctggtttggcctcctggcccgactctgacctacactcccct Alignment from Pairagon AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagAGGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTC---AAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCGgtgagtaccctggtttggcctcctggcccgactctgacctacactcccct Alignment from Exonerate_protein2genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagAGGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTCA---AGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCGgtgagtaccctggtttggcctcctggcccgactctgacctacactcccct Alignment from Exonerate_coding2genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagAGGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTCA---AGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCGgtgagtaccctggtttggcctcctggcccgactctgacctacactcccct Alignment from GeneWise AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCGACTGCCTGCGCGTCGGCTGCGCACCCA ttttctctcttcccttgccatttttctgatgtcactgttgtctttcttagAGGCTACAGTCTTAAGCTATGATGGCTCCATGTACATGAAGATCATGCTGCCTACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACACTTCATGTCA---AGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGATACTCTGCATCTTGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTC---------------GGTGAGTACCCTGgtttggcctcctggcccgactctgacctacactcccct #### Nrxn2_ID1760_11 --> 2 - 1 Original Alignment acTGCCTGCGCGTCGGCTGCGCACCCa cctttttttctccatccccctctgcccatttgtatcattattattaaaagacTGCCTGCGTGTCGGCTGTGCACCCagtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt Alignment from CESAR acTGCCTGCGCGTCGGCTGCGCACCCa cctttttttctccatccccctctgcccatttgtatcattattattaaaagacTGCCTGCGTGTCGGCTGTGCACCCagtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt Alignment from Spaln_aa2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA cctttttttctccatccccctctgcccatttgtatcattattattaaaagACTGCCTGCGTGTCGGCTGTGCACCCAgtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt Alignment from Spaln_nt2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA cctttttttctccatccccctctgcccatttgtatcattattattaaaagACTGCCTGCGTGTCGGCTGTGCACCCAgtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt Alignment from Pairagon ACTGCCTGCGCGTCGGCTGCGCACCCA cctttttttctccatccccctctgcccatttgtatcattattattaaaagACTGCCTGCGTGTCGGCTGTGCACCCAgtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt Alignment from Exonerate_protein2genome ACTGCCTGCGCGTCGGCTGCGCACCCA cctttttttctccatccccctctgcccatttgtatcattattattaaaagACTGCCTGCGTGTCGGCTGTGCACCCAgtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt Alignment from Exonerate_coding2genome ACTGCCTGCGCGTCGGCTGCGCACCCA cctttttttctccatccccctctgcccatttgtatcattattattaaaagACTGCCTGCGTGTCGGCTGTGCACCCAgtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt Alignment from GeneWise cctttttttctccatccccctctgcccatttgtatcattattattaaaagactgcctgcgtgtcggctgtgcacccagtaagtggcttgcctcttcttttgcagccacccaagaggtctgggaggtt #### Nrxn2_ID1781_20 --> 2 - 0 Original Alignment gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtaggaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg Alignment from CESAR gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtaggaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg Alignment from Spaln_aa2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtagGACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg Alignment from Spaln_nt2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtagGACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg Alignment from Pairagon GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtagGACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg Alignment from Exonerate_protein2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtagGACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg Alignment from Exonerate_coding2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtagGACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg Alignment from GeneWise GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctgcctgcctctcccctgtcttcgcccctccattctttgtgtttttgtagGACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCTGGCCTCTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtcagacccctcctgggtctgggcaggaacccctcctgggtctaggtggg #### Nt5c2_ID10038_15 --> 2 - 2 Original Alignment caCTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACaa gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagcaCTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACaagtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg Alignment from CESAR caCTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACaa gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagcaCTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACaagtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg Alignment from Spaln_aa2Genome CACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACAA gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagCACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACAAgtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg Alignment from Spaln_nt2Genome CACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACAA gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagCACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACAAgtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg Alignment from Pairagon CACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACAA gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagCACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACAAgtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg Alignment from Exonerate_protein2genome CACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACAA gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagCACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACAAgtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg Alignment from Exonerate_coding2genome CACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACAA gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagCACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACAAgtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg Alignment from GeneWise CACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCTGAACTCTACAA gcttaactcgtgtaaaacattttcttttttcttctttattcctctttcagCACTCTTTGAAGAACTTCAAAGCTTGGATATTTTCTTGGCAGAACTCTACAAgtaatgttctcaaccacaacttatggccaaagaccacctacctctccatg #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct Alignment from Exonerate_coding2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aggggttcaggacttccataagtccaaaccatcttaaattccccccttagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtaagcgagaacgcagtgtgttctaggacatgctccttcatcctcaccct #### Nt5c2_ID10042_11 --> 0 - 0 Original Alignment AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct Alignment from CESAR AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct Alignment from Spaln_aa2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct Alignment from Spaln_nt2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct Alignment from Pairagon AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct Alignment from Exonerate_protein2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct Alignment from Exonerate_coding2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct Alignment from GeneWise AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gtgtttgtcttgagcagaggtcacatgtacttctttctttttaattaaagAAAATCATGACTTACCTGTTTGATTTCCCACATGGCCCCAAGgtaaaatagaacttatcatatgtcatttgttaagctgatttactatacct #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from CESAR gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Pairagon GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta #### Nudt22_ID1972_3 --> 0 - 2 Original Alignment GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCcagtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga Alignment from CESAR GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCcagtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga Alignment from Spaln_aa2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga Alignment from Spaln_nt2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga Alignment from Pairagon GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga Alignment from Exonerate_protein2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga Alignment from Exonerate_coding2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga Alignment from GeneWise GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA cagccaggctactgagaagtcagcctgacccttcccctcgttctacctagGTGAACCTGCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACCAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtgagtcagttcctgggcacatgatcctgggtgagatggccagggaagga #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagatTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagatTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt #### Nxf1_ID2359_19 --> 1 - 2 Original Alignment gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa gtgaggttatttgtccatttgtttaagattggtttctctttctcttacaggCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaagtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag Alignment from CESAR gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa gtgaggttatttgtccatttgtttaagattggtttctctttctcttacaggCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaagtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag Alignment from Spaln_aa2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA gtgaggttatttgtccatttgtttaagattggtttctctttctcttacagGCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAgtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag Alignment from Spaln_nt2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA gtgaggttatttgtccatttgtttaagattggtttctctttctcttacagGCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAgtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag Alignment from Pairagon GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA gtgaggttatttgtccatttgtttaagattggtttctctttctcttacagGCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAgtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag Alignment from Exonerate_protein2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA gtgaggttatttgtccatttgtttaagattggtttctctttctcttacagGCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAgtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag Alignment from Exonerate_coding2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA gtgaggttatttgtccatttgtttaagattggtttctctttctcttacagGCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAgtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag Alignment from GeneWise GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA gtgaggttatttgtccatttgtttaagattggtttctctttctcttacagGCTATGTATTGTAAATGATGAATTATTTGTACGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAgtgagcgctgatcctaggtatgaggaccaagaggatcacctgacagtgag #### Nxf1_ID2360_20 --> 1 - 0 Original Alignment gTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccaggTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc Alignment from CESAR gTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccaggTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc Alignment from Spaln_aa2Genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccagGTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc Alignment from Spaln_nt2Genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccagGTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc Alignment from Pairagon GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccagGTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc Alignment from Exonerate_protein2genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccagGTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc Alignment from Exonerate_coding2genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccagGTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc Alignment from GeneWise GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG ctgactgcattttggtgtttatgtagctcataccctgcccttcctcccagGTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACCCTTCTCAAGgtgagctatgagaattttttttattgctagaaacggatcatctcttgagc #### Obfc1_ID10234_3 --> 2 - 1 Original Alignment tgGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAg gattctcacaacagccaagtctctcaccacttctctttctctacctgcagtgGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAggtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa Alignment from CESAR tgGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAg gattctcacaacagccaagtctctcaccacttctctttctctacctgcagtgGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAggtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa Alignment from Spaln_aa2Genome TGGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAG gattctcacaacagccaagtctctcaccacttctctttctctacctgcagTGGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAGgtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa Alignment from Spaln_nt2Genome TGGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAG gattctcacaacagccaagtctctcaccacttctctttctctacctgcagTGGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAGgtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa Alignment from Pairagon TGGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAG gattctcacaacagccaagtctctcaccacttctctttctctacctgcagTGGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAGgtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa Alignment from Exonerate_protein2genome TGGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAG gattctcacaacagccaagtctctcaccacttctctttctctacctgcagTGGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAGgtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa Alignment from Exonerate_coding2genome TGGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAG gattctcacaacagccaagtctctcaccacttctctttctctacctgcagTGGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAGgtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa Alignment from GeneWise TGGACGATGCCACTGGGGTTATAAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAG gattctcacaacagccaagtctctcaccacttctctttctctacctgcagTGGACGATGCCACTGGGGTTATTAACTGCGTCTGCTGGAAGAAGCTGAGCAACGCTGAGTCCTCCTCAGgtaagcgtggttgccacagccctctgatgtcactcaaggtagctcaccaa #### Obfc1_ID10235_2 --> 2 - 1 Original Alignment gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttaggtACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCggtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag Alignment from CESAR gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttaggtACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCggtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag Alignment from Spaln_aa2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttagGTACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCGgtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag Alignment from Spaln_nt2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttagGTACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCGgtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag Alignment from Pairagon GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttagGTACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCGgtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag Alignment from Exonerate_protein2genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttagGTACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCGgtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag Alignment from Exonerate_coding2genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttagGTACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCGgtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag Alignment from GeneWise GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG aatgcaagaatatgcttgcgttgtttgattgtggtatcttcccgttttagGTACATATTTTTACAACGGGCATCCGATAAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAAAGAGAGACTTTCTACAGCTATGGCGgtgagtgtgatcctctgaaactatttgtacccactcagaggcaggttgag #### Oosp1_ID3263_4 --> 1 - 2 Original Alignment tCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAaa tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagtCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAaagtcagcaatgccaaactatattttacatctttgttaagtgattaagatat Alignment from CESAR tCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAaa tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagtCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAaagtcagcaatgccaaactatattttacatctttgttaagtgattaagatat Alignment from Spaln_aa2Genome TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagTCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAAAgtcagcaatgccaaactatattttacatctttgttaagtgattaagatat Alignment from Spaln_nt2Genome TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagTCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAAAgtcagcaatgccaaactatattttacatctttgttaagtgattaagatat Alignment from Pairagon TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagTCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAAAgtcagcaatgccaaactatattttacatctttgttaagtgattaagatat Alignment from Exonerate_protein2genome TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagTCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAAAgtcagcaatgccaaactatattttacatctttgttaagtgattaagatat Alignment from Exonerate_coding2genome TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagTCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAAAgtcagcaatgccaaactatattttacatctttgttaagtgattaagatat Alignment from GeneWise TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA tgatctccagtcccctgtgatatttctcaaccttaacatttttatttcagTCAGAGTCCTCACTTCTGTGAAGTGGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGTTGGACAGAAGATATGAGGGCAAGAAGAGATAAGCAAACCGTCCCGATGGTGCAACCAAAgtcagcaatgccaaactatattttacatctttgttaagtgattaagatat #### Oosp2_ID3258_2 --> 2 - 0 Original Alignment tgGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagtgGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct Alignment from CESAR tgGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagtgGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct Alignment from Spaln_aa2Genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagTGGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct Alignment from Spaln_nt2Genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagTGGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct Alignment from Pairagon TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagTGGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct Alignment from Exonerate_protein2genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagTGGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct Alignment from Exonerate_coding2genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagTGGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct Alignment from GeneWise TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG tcttgaagttaatgcacatttgacatttgacggtcacatttcctttccagTGGATGTAAGTTGTTCTCAGGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTCGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtatgtactttgtagtgccgtttgtggtagtaacacatgattttcatgct #### Opalin_ID8092_3 --> 0 - 0 Original Alignment ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAgtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat Alignment from CESAR ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAgtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat Alignment from Spaln_aa2Genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAgtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat Alignment from Spaln_nt2Genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAgtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat Alignment from Pairagon ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAgtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat Alignment from Exonerate_protein2genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAgtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat Alignment from Exonerate_coding2genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAgtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat Alignment from GeneWise gtggacaacagattttgttttcttatatcagctcttcttcctgtttgcagacatcctctccagttgtcacgagtgccaaagccacagtgagtacatgagctcatggcaattgagttgtctgcaaagatcaagctat #### Opalin_ID8093_2 --> 0 - 0 Original Alignment AGTTTTTCACTGAACTTTACACTGCCATCGAATACG aggctgctaactgttcttgcaagttttattgaacacttttgtttcaacagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt Alignment from CESAR AGTTTTTCACTGAACTTTACACTGCCATCGAATACG aggctgctaactgttcttgcaagttttattgaacacttttgtttcaacagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt Alignment from Spaln_aa2Genome AGTTTTTCACTGAACTTTACACTGCCATCGAATACG aggctgctaactgttcttgcaagttttattgaacacttttgtttcaacagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt Alignment from Spaln_nt2Genome AGTTTTTCACTGAACTTTACACTGCCATCGAATACG aggctgctaactgttcttgcaagttttattgaacacttttgtttcaacagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt Alignment from Pairagon ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACG aggctgctaactgttcttgcaagttttattgaacacttttgtttcaaCAGAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt Alignment from Exonerate_protein2genome ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACG aggctgctaactgttcttgcaagttttattgaacacttttgtttcaaCAGAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt Alignment from Exonerate_coding2genome ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACG aggctgctaactgttcttgcaagttttattgaacacttttgtttcaaCAGAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt Alignment from GeneWise aggctgctaactgttcttgcaagttttattgaacacttttgtttcaacagagtttttcactgaactttacactgccatcaaatacagtaggcggagtagttagacacacccctgtctctaggcaagtgagcaaagt #### Osbp_ID3345_4 --> 0 - 1 Original Alignment GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAggtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc Alignment from CESAR GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAggtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc Alignment from Spaln_aa2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAGgtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc Alignment from Spaln_nt2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAGgtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc Alignment from Pairagon GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAGgtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc Alignment from Exonerate_protein2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAGgtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc Alignment from Exonerate_coding2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAGgtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc Alignment from GeneWise GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggagtctgactagttgaggcagccatccatgttccatcttcatttcagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGGGACCAGCGAATCCAACTGGAAGAAACTCTTGAACAGCTGGAAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTCAAGgtatgtcacttggctcttgcacagctgttgtgggatgaccaagaggtttc #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa aggcattggtaaatataacatgaaaacactttctccatcttggttactagatCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaagtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa aggcattggtaaatataacatgaaaacactttctccatcttggttactagatCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaagtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG tggcctgttgccatctttgtcaccttacaatttacaaatctacatttcagTTCATGGACCTTATCGAGCAGGTGGAGAAACAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGGCTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTTGAGCACTTCATTGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAACAGgtacctcctcctctatcactctgctttggggccctccttttcttttttgt #### Pacs1_ID871_22 --> 1 - 1 Original Alignment gAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAg ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttaggAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAggtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag Alignment from CESAR gAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAg ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttaggAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAggtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag Alignment from Spaln_aa2Genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttagGAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAGgtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag Alignment from Spaln_nt2Genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttagGAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAGgtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag Alignment from Pairagon GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttagGAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAGgtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag Alignment from Exonerate_protein2genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttagGAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAGgtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag Alignment from Exonerate_coding2genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttagGAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAGgtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag Alignment from GeneWise GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG ttagtcactgaagtcgaagccaacatttcctccgtctctctttcacttagGAGCCCAAATAGCCCATATGGAGATGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCGAGAGTGTCTTCCGCTCAGTGCAGATTTCTCGCCTGCCACATGCAGGGGAAGCGCAGCTTTCTGGCACCATGGCAATGACTGTAGTCACCAAAGAGAAGAACAAGAAAGgtgattcaggatgacaccagtgcaaaggggctcactggctcacctccaag #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg ctctactctagccaccaacacttcactttgacactctactctccacccaggtTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAggtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg ctctactctagccaccaacacttcactttgacactctactctccacccaggtTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAggtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagcTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAggtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagcTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAggtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca #### Pacs1_ID880_14 --> 0 - 0 Original Alignment ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg Alignment from CESAR ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg Alignment from Spaln_aa2Genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg Alignment from Spaln_nt2Genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg Alignment from Pairagon ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg Alignment from Exonerate_protein2genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg Alignment from Exonerate_coding2genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg Alignment from GeneWise ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG acagatgtcctatttattcccacctgccctgtctgtctgtcaccccacagATTCCAAGGAAGGTGGTATATGACCAACTGAACCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCTTGGTGAACACCACAGACTGGCAGGGCCAGgttagacattgagggtcaaggggtagtgggtctagatgtcctgggtgttg #### Pacs1_ID881_13 --> 1 - 0 Original Alignment cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagcAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct Alignment from CESAR cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagcAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct Alignment from Spaln_aa2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct Alignment from Spaln_nt2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct Alignment from Pairagon CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct Alignment from Exonerate_protein2genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct Alignment from Exonerate_coding2genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct Alignment from GeneWise CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG atgtggctgtggggttgaaatggttattttcccctctgactctctcccagCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTTGAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaagttcagattcctgcaagatcaggtcctcttacttgaatttaagtct #### Pacs1_ID891_3 --> 0 - 0 Original Alignment GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac Alignment from CESAR GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac Alignment from Spaln_aa2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac Alignment from Spaln_nt2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac Alignment from Pairagon GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac Alignment from Exonerate_protein2genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac Alignment from Exonerate_coding2genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac Alignment from GeneWise GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttttctgcatgcagtaacaagcattgaggtttctgtttgccttctgcagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaagcgaagtctaaatcctgacatctctagtgatgcaacagtctagcac #### Pank1_ID6984_5 --> 1 - 0 Original Alignment cTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagcTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct Alignment from CESAR cTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagcTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct Alignment from Spaln_aa2Genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct Alignment from Spaln_nt2Genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct Alignment from Pairagon CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct Alignment from Exonerate_protein2genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct Alignment from Exonerate_coding2genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct Alignment from GeneWise CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAG ggtgctgcctggggataactttgacactccaacaccccgactgtccgcagCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCTTCAGCAAGGAAGACCTTGCCCGGGCCACATTGGTCACCATCACCAACAACATAGGCTCCATTGCTCGGATGTGTGCACTGAATGAGgtaagtcataaagccttgagatggccacgggccatgctcttgcatcatct #### Patl1_ID3316_4 --> 0 - 0 Original Alignment CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from CESAR CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Spaln_aa2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Spaln_nt2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Pairagon CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Exonerate_protein2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Exonerate_coding2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from GeneWise CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct #### Patl1_ID3317_5 --> 0 - 0 Original Alignment GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta Alignment from CESAR GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta Alignment from Spaln_aa2Genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta Alignment from Spaln_nt2Genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta Alignment from Pairagon GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta Alignment from Exonerate_protein2genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta Alignment from Exonerate_coding2genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta Alignment from GeneWise GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG aacatcacaagtaatttctctgtattgttgggttgtaacgactttcacagGAAATGCCTACGGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAGGATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTTCGGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAAATGGCTGTTCCCAGCTTCAACCAACAGgtagggttcattaatgcacacagcccagataatggaaatctgggcaatta #### Patl1_ID3324_9 --> 1 - 2 Original Alignment aCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaa tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagaCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaagtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac Alignment from CESAR aCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaa tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagaCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaagtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac Alignment from Spaln_aa2Genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac Alignment from Spaln_nt2Genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac Alignment from Pairagon ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac Alignment from Exonerate_protein2genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac Alignment from Exonerate_coding2genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac Alignment from GeneWise ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtcaattaagatgagataatcaaggtgggttggttgtctcctccagACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggcgtccatcactcctgatatgttagggacgtggtgacttgggtgac #### Patl1_ID3328_13 --> 0 - 0 Original Alignment GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg Alignment from CESAR GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg Alignment from Spaln_aa2Genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg Alignment from Spaln_nt2Genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg Alignment from Pairagon GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg Alignment from Exonerate_protein2genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg Alignment from Exonerate_coding2genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg Alignment from GeneWise GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagatgctttacagaatttttacagaactcctctttgtatttttctcagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTTGTTATAATTGAGAAAgtagactctagatctagaatttatttccatatttagtctccactcaaagg #### Patl1_ID3330_15 --> 1 - 0 Original Alignment gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcaggCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt Alignment from CESAR gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcaggCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt Alignment from Spaln_aa2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt Alignment from Spaln_nt2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt Alignment from Pairagon GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt Alignment from Exonerate_protein2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt Alignment from Exonerate_coding2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt Alignment from GeneWise GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cggtttttccatattgcctttattgacaataaaataatgtttttttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtagcatgcagggcaattttcgtataatcctcaagttagaaaactt #### Patl1_ID3332_17 --> 0 - 2 Original Alignment TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGtg atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGtggtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg Alignment from CESAR TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGtg atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGtggtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg Alignment from Spaln_aa2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGTGgtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg Alignment from Spaln_nt2Genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGTGgtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg Alignment from Pairagon TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGTGgtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg Alignment from Exonerate_protein2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGTGgtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg Alignment from Exonerate_coding2genome TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGTGgtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg Alignment from GeneWise TTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTG atctcaccagccttactgttaggtttaggagcttctctgtttctttccagTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAGAGTTCAGATCCTGCTATAGAATTAACGCAAAATAACCAGTGgtaagtattaatagctcatcccttaatttaaatatttaaagttctccttg #### Pax2_ID9170_6 --> 2 - 0 Original Alignment atGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagatGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt Alignment from CESAR atGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagatGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt Alignment from Spaln_aa2Genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagATGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt Alignment from Spaln_nt2Genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagATGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt Alignment from Pairagon ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagATGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt Alignment from Exonerate_protein2genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagATGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt Alignment from Exonerate_coding2genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagATGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt Alignment from GeneWise ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tatttttcttggccttatgctcattactgccctctaccctctgtacacagATGTGTCTGAGGGCTCTGTCCCTAATGGGGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAGgtgagagtggaatttccattcacccagaacataatggaactgggcggagt #### Pax2_ID9172_7 --> 0 - 1 Original Alignment GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCg tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCggtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt Alignment from CESAR GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCg tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCggtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt Alignment from Spaln_aa2Genome GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCG tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCGgtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt Alignment from Spaln_nt2Genome GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCG tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCGgtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt Alignment from Pairagon GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCG tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCGgtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt Alignment from Exonerate_protein2genome GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCG tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCGgtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt Alignment from Exonerate_coding2genome GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCG tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCGgtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt Alignment from GeneWise GGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGTCCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGTGACCG tctgtgtataagcatcaatagggacctagtgtcctgtgctttgttgttagGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGACTTGATGAAGTCAAGTCCAGTCTATCCGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACTCAGACATACCCTGTTGTGACCGgtgagttaaggtgacttccaggagggtgggggcactgcttcactgggggt #### Pcgf6_ID10078_9 --> 0 - 0 Original Alignment GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa Alignment from CESAR GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa Alignment from Spaln_aa2Genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa Alignment from Spaln_nt2Genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa Alignment from Pairagon GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa Alignment from Exonerate_protein2genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa Alignment from Exonerate_coding2genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa Alignment from GeneWise GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG catatgttttgaagcatgaaagtggtctctacttacatcttctgtttcagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAGgtaagtccttatcacccctatcctgaacacatagaccaatggattataaa #### Pcgf6_ID10079_8 --> 0 - 0 Original Alignment CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga Alignment from CESAR CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga Alignment from Spaln_aa2Genome CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga Alignment from Spaln_nt2Genome CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga Alignment from Pairagon CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga Alignment from Exonerate_protein2genome CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga Alignment from Exonerate_coding2genome CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga Alignment from GeneWise CCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAGCTTGTCAG tatgtatgtatacatttacataatctggccacacatatgtatgcctgaagCCATTGGAAAAGAAGTTTGTGCGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTCAGAAGAAAAATGGGTCTCGATCCAGCCTGTCAGgtaatttacatgtgtgtagaagggaggtgaggttgcaggatgggatttga #### Pcgf6_ID10081_6 --> 2 - 2 Original Alignment ctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgg ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgggtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa Alignment from CESAR ctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgg ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgggtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa Alignment from Spaln_aa2Genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGGgtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa Alignment from Spaln_nt2Genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGGgtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa Alignment from Pairagon CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGGgtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa Alignment from Exonerate_protein2genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGGgtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa Alignment from Exonerate_coding2genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGGgtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa Alignment from GeneWise CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ttgtgaaaattttaatcctacatcaggtttttttttctttttgtcttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTTCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGGgtaagtaacctgatttaccagttgcttatttttggattttcaaagtaaaa #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGaggtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG atgctcctccttggtgtcgctgccctgacttctttgtcccactttcttagGTGAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGAGGCAGCGTCCAGAATGCCAAGCAGGCACTCTGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTTTGTGTCACCTCTGACCACATCTCTGCCTGGTAGCCACCCCCAATTGCGGGCGCTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAGgtagagcctggttgtcccctaacttgggaagcttttgacaaagtcttgca #### Pcnxl3_ID1166_27 --> 2 - 0 Original Alignment gcACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaaggcACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag Alignment from CESAR gcACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaaggcACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag Alignment from Spaln_aa2Genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag Alignment from Spaln_nt2Genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag Alignment from Pairagon GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag Alignment from Exonerate_protein2genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag Alignment from Exonerate_coding2genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag Alignment from GeneWise GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaattagggactgtcctagtagctctgtcctcttcttttgttctccaagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACGGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTATAGCATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTCCGCAAGATCCTTGTCACTTATTATGTCAAGgtgggcgcttggggctgtgaggcagctcttggtgaattgtgactacacag #### Pcnxl3_ID1168_25 --> 1 - 1 Original Alignment cACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagcACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAggtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg Alignment from CESAR cACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagcACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAggtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg Alignment from Spaln_aa2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg Alignment from Spaln_nt2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg Alignment from Pairagon CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg Alignment from Exonerate_protein2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg Alignment from Exonerate_coding2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg Alignment from GeneWise CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcataaaccactctgggctctttgcagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagtcgctacttgtctaggccctcacaggcaagttgccccctggaggg #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Spaln_nt2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Pairagon AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Exonerate_protein2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Exonerate_coding2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from GeneWise AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta #### Pcnxl3_ID1181_12 --> 1 - 0 Original Alignment gACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccaggACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc Alignment from CESAR gACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccaggACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc Alignment from Spaln_aa2Genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc Alignment from Spaln_nt2Genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc Alignment from Pairagon GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc Alignment from Exonerate_protein2genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc Alignment from Exonerate_coding2genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc Alignment from GeneWise GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG cccaaccccccttaaagactgggacaggtcttcctatcccttcttcccagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGATTGAGCAGCCTGGTTGCCATCCTTGGGTACCTGTTGCTGCTAAAGGGCTTCTTCACTGACATCTGGGTCTTTCAGTTCTGTCTAGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAGgtaagtcctggctccccaaatccacaaccgtccggggccacctgcttccc #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagacATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGa taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagacATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGagtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAGAGAAACTGA taacagaagaggaccccagggttgtgatccaacatgatcttgttggttagACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATTGTGACCTCTGCCGACCGAGAAATGCTGAAGCTCAGCTCCAAAGAGAAACTGAgtaactgggcaaaactggcaggcagatgtcttgtgatgaccatcatccca #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAggtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAggtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Pairagon GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Exonerate_protein2genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Exonerate_coding2genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from GeneWise GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa #### Pcsk5_ID4236_31 --> 1 - 1 Original Alignment gGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAg aatctagttattggaagctgatataatttgaccgatggttttgcttgcaggGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAggtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca Alignment from CESAR gGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAg aatctagttattggaagctgatataatttgaccgatggttttgcttgcaggGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAggtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca Alignment from Spaln_aa2Genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG aatctagttattggaagctgatataatttgaccgatggttttgcttgcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAGgtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca Alignment from Spaln_nt2Genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG aatctagttattggaagctgatataatttgaccgatggttttgcttgcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAGgtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca Alignment from Pairagon GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG aatctagttattggaagctgatataatttgaccgatggttttgcttgcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAGgtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca Alignment from Exonerate_protein2genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG aatctagttattggaagctgatataatttgaccgatggttttgcttgcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAGgtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca Alignment from Exonerate_coding2genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG aatctagttattggaagctgatataatttgaccgatggttttgcttgcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAGgtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca Alignment from GeneWise GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG aatctagttattggaagctgatataatttgaccgatggttttgcttgcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCTGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAGgtaagcggaaacatccagattgaaaaaacaaaacgaaataaaacaaaaca #### Pcsk5_ID4238_29 --> 2 - 1 Original Alignment atGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAg tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagatGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAggtgagtttggaaggggagacagcgatggcagttggacccggacattcact Alignment from CESAR atGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAg tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagatGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAggtgagtttggaaggggagacagcgatggcagttggacccggacattcact Alignment from Spaln_aa2Genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagATGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAGgtgagtttggaaggggagacagcgatggcagttggacccggacattcact Alignment from Spaln_nt2Genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagATGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAGgtgagtttggaaggggagacagcgatggcagttggacccggacattcact Alignment from Pairagon ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagATGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAGgtgagtttggaaggggagacagcgatggcagttggacccggacattcact Alignment from Exonerate_protein2genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagATGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAGgtgagtttggaaggggagacagcgatggcagttggacccggacattcact Alignment from Exonerate_coding2genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagATGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAGgtgagtttggaaggggagacagcgatggcagttggacccggacattcact Alignment from GeneWise ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG tgtaagtttatgtgacaaggccaaatctaatctcctcccctctctttcagATGCAATGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAGgtgagtttggaaggggagacagcgatggcagttggacccggacattcact #### Pcsk5_ID4259_22 --> 1 - 1 Original Alignment gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg ccaattcagaagtcctcctagtagattcctaacctttctctcacacataggGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAggtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact Alignment from CESAR gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg ccaattcagaagtcctcctagtagattcctaacctttctctcacacataggGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAggtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact Alignment from Spaln_aa2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ccaattcagaagtcctcctagtagattcctaacctttctctcacacatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAGgtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact Alignment from Spaln_nt2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ccaattcagaagtcctcctagtagattcctaacctttctctcacacatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAGgtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact Alignment from Pairagon GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ccaattcagaagtcctcctagtagattcctaacctttctctcacacatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAGgtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact Alignment from Exonerate_protein2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ccaattcagaagtcctcctagtagattcctaacctttctctcacacatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAGgtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact Alignment from Exonerate_coding2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ccaattcagaagtcctcctagtagattcctaacctttctctcacacatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAGgtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact Alignment from GeneWise GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ccaattcagaagtcctcctagtagattcctaacctttctctcacacatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCCTTCCTGGAAGTTCGAGTTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCCAATTGCACCTCTTGTAGAGCAGgtgagcaaatttgctgccgactcctgtactctccctcacaaacaagcact #### Pcsk5_ID4265_18 --> 1 - 1 Original Alignment tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagtCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTggtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt Alignment from CESAR tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagtCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTggtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt Alignment from Spaln_aa2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagTCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTGgtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt Alignment from Spaln_nt2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagTCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTGgtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt Alignment from Pairagon TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagTCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTGgtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt Alignment from Exonerate_protein2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagTCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTGgtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt Alignment from Exonerate_coding2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagTCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTGgtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt Alignment from GeneWise TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG tttgccatggggacaacagtctgcttatattgcttcatgtgctcacacagTCTTCAGGGATCCCGCTGCTCAGTCACCTGTGAGGATGGACAGTTCTTCAATAATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTGgtaagtttctcccagtcttcctccttacattcctgactgtggtggtcctt #### Pcsk5_ID4289_9 --> 0 - 2 Original Alignment ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaagtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca Alignment from CESAR ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaagtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca Alignment from Spaln_aa2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAAgtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca Alignment from Spaln_nt2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAAgtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca Alignment from Pairagon ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAAgtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca Alignment from Exonerate_protein2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAAgtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca Alignment from Exonerate_coding2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAAgtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca Alignment from GeneWise ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactgcccttggggtctaatttggacttgacctttcttgccaaagATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAAgtaagtcttgatgtctccttcctacctctggtgacaagtgcctaagtcca #### Pcsk5_ID4295_8 --> 0 - 0 Original Alignment GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat Alignment from CESAR GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat Alignment from Spaln_aa2Genome GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat Alignment from Spaln_nt2Genome GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat Alignment from Pairagon GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat Alignment from Exonerate_protein2genome GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat Alignment from Exonerate_coding2genome GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat Alignment from GeneWise GGGCGGAGAGGCCTTGGATCTGTGTTTGTGTGGGCATCTGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATACCAACAGCATCTATACCATCTCCATCAGCAGTACGGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACACTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATA ctgcaacaggggtcctgtattctcatcttttctgtcctgtttcttcttagGGGCGGAGAGGCCTCGGATCTGTGTTTGTGTGGGCATCCGGCAATGGTGGACGGAGCAAGGATCACTGTTCTTGTGATGGCTATTCCAACAGCATCTACACCATCTCCATCAGCAGTACAGCCGAAAGTGGAAAGAAACCTTGGTACTTGGAAGAGTGTTCATCTACATTGGCTACAACCTACAGCAGTGGAGAATCCTATGATAAGAAAATAgtgagtaacctttgcttgccaagtaacctccatttacagtgaaagataat #### Pcsk5_ID4301_6 --> 1 - 1 Original Alignment gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacaggCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAggtaggtgacacttccagggatatacacaggagccaggaagctcctggcct Alignment from CESAR gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacaggCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAggtaggtgacacttccagggatatacacaggagccaggaagctcctggcct Alignment from Spaln_aa2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacagGCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggtgacacttccagggatatacacaggagccaggaagctcctggcct Alignment from Spaln_nt2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacagGCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggtgacacttccagggatatacacaggagccaggaagctcctggcct Alignment from Pairagon GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacagGCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggtgacacttccagggatatacacaggagccaggaagctcctggcct Alignment from Exonerate_protein2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacagGCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggtgacacttccagggatatacacaggagccaggaagctcctggcct Alignment from Exonerate_coding2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacagGCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggtgacacttccagggatatacacaggagccaggaagctcctggcct Alignment from GeneWise GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttatacatatgcttctcttcccaacagGCATGGGACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggtgacacttccagggatatacacaggagccaggaagctcctggcct #### Pcx_ID557_7 --> 2 - 0 Original Alignment ggGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagggGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta Alignment from CESAR ggGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagggGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta Alignment from Spaln_aa2Genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta Alignment from Spaln_nt2Genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta Alignment from Pairagon GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta Alignment from Exonerate_protein2genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta Alignment from Exonerate_coding2genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta Alignment from GeneWise GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcacctggatgctaggaaaggctggttaactcttacctgcccaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtatgtacatgttccccagcaacatgagcccatgtttgcaagctttctta #### Pdcd11_ID10108_2 --> 0 - 0 Original Alignment GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct Alignment from CESAR GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct Alignment from Spaln_aa2Genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct Alignment from Spaln_nt2Genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct Alignment from Pairagon GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct Alignment from Exonerate_protein2genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct Alignment from Exonerate_coding2genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct Alignment from GeneWise GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gataacaggaaaaaataagaaccacctctggtgcttgatttttattgtagGTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATCCTTAGTCTTGAGgtgagctaacatttgctgtctcttaacatatttcctaagttcagcacgct #### Pdcd11_ID10109_3 --> 0 - 0 Original Alignment TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc Alignment from CESAR TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc Alignment from Spaln_aa2Genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc Alignment from Spaln_nt2Genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc Alignment from Pairagon TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc Alignment from Exonerate_protein2genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc Alignment from Exonerate_coding2genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc Alignment from GeneWise TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG agggagccagagcactccctctaccttgacatgtgtttttttcccttaagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACAGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgctgttgggatgcagctagcactggggttcgagttcgggcatgc #### Pdcd11_ID10111_5 --> 0 - 1 Original Alignment CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAggtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat Alignment from CESAR CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAggtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat Alignment from Spaln_aa2Genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAGgtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat Alignment from Spaln_nt2Genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAGgtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat Alignment from Pairagon CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAGgtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat Alignment from Exonerate_protein2genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAGgtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat Alignment from Exonerate_coding2genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAGgtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat Alignment from GeneWise CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG cctttgtggatgttctgtttacctcagagatgttttgaaatctctttcagCTGTTGACAGGTACAGTATCTAGCCTGGAAGACCATGGCTACCTAGTGGGCATTGGTGTTGGTGGGACCAGAGCTTTTCTATCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAGgtaaggtggtgtgtagacgcgagctccagcatacagaattaactgtaaat #### Pdcd11_ID10114_8 --> 0 - 0 Original Alignment GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg Alignment from CESAR GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg Alignment from Spaln_aa2Genome GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg Alignment from Spaln_nt2Genome GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg Alignment from Pairagon GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg Alignment from Exonerate_protein2genome GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg Alignment from Exonerate_coding2genome GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg Alignment from GeneWise GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG tgtgttctgtggatgcaagctcataagcttcctttgtttttgttaaacagGTGAAAACCTGTATCCTCTGTGTTCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTCCTAGATGATGTCCCTGTTCAGGGTTTCTTTAAGAATGCAGGTGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTATGCCCGGgtaagggggattacttggtcaacggtctcttcactggaaggactttgggg #### Pdcd11_ID10115_9 --> 0 - 2 Original Alignment GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGaagtacatgccactagcacacacatgcatatgcatttcccctggcccctgac Alignment from CESAR GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGaagtacatgccactagcacacacatgcatatgcatttcccctggcccctgac Alignment from Spaln_aa2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtacatgccactagcacacacatgcatatgcatttcccctggcccctgac Alignment from Spaln_nt2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtacatgccactagcacacacatgcatatgcatttcccctggcccctgac Alignment from Pairagon GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtacatgccactagcacacacatgcatatgcatttcccctggcccctgac Alignment from Exonerate_protein2genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtacatgccactagcacacacatgcatatgcatttcccctggcccctgac Alignment from Exonerate_coding2genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtacatgccactagcacacacatgcatatgcatttcccctggcccctgac Alignment from GeneWise GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA gaactctgttcggagccatgttttgactggaactctgtgctgccttccagGTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAATGCTGAGGCCTTCAAACCAGGGAGCACTCACAAGTGTAGAATCATTGACTATAGCCAAATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtacatgccactagcacacacatgcatatgcatttcccctggcccctgac #### Pdcd11_ID10130_24 --> 2 - 2 Original Alignment gaCCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCag aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcaggaCCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCaggtgagtccacacacacacacacacatacacatatacacaccaatgccacc Alignment from CESAR gaCCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCag aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcaggaCCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCaggtgagtccacacacacacacacacatacacatatacacaccaatgccacc Alignment from Spaln_aa2Genome GACCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCAG aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcagGACCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCAGgtgagtccacacacacacacacacatacacatatacacaccaatgccacc Alignment from Spaln_nt2Genome GACCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCAG aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcagGACCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCAGgtgagtccacacacacacacacacatacacatatacacaccaatgccacc Alignment from Pairagon GACCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCAG aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcagGACCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCAGgtgagtccacacacacacacacacatacacatatacacaccaatgccacc Alignment from Exonerate_protein2genome GACCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCAG aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcagGACCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCAGgtgagtccacacacacacacacacatacacatatacacaccaatgccacc Alignment from Exonerate_coding2genome GACCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCAG aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcagGACCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCAGgtgagtccacacacacacacacacatacacatatacacaccaatgccacc Alignment from GeneWise GACCTTACAGACTTGAAGAAGGTGAAGTGGCCATGGGCCGAGTGATGAAGGTTGTACCCAACAGGGGACTGACCGTCTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGCGACTCGTACTCCGAGGCACCCCTGGAGGACTTCTGCCCCCAGAAGATTGTCAG aggccatagtcagccaggctgctgggaatttgtgttgttttgttttgcagGACCTTACAGACTTGAAGAAGACGAAGTGGCCATGGGCCGAGTGATGAAGGTCGTACCCAACAAGGGACTGACTGTTTCCTTCCCTTTTGGGAAGATAGGGAAAGTCAGTATGTTTCACCTGAGTGACTCGTACTCTGAAGCACCCCTGGAAGACTTCTGCCCCCAGAAGATTGTCAGgtgagtccacacacacacacacacatacacatatacacaccaatgccacc #### Pdcd11_ID10133_27 --> 1 - 2 Original Alignment cCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGcg agggactgtgttgaatttgtactacagatgccattaaccctgttttctagcCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGcagtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg Alignment from CESAR cCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGcg agggactgtgttgaatttgtactacagatgccattaaccctgttttctagcCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGcagtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg Alignment from Spaln_aa2Genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG agggactgtgttgaatttgtactacagatgccattaaccctgttttctagCCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGCAgtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg Alignment from Spaln_nt2Genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG agggactgtgttgaatttgtactacagatgccattaaccctgttttctagCCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGCAgtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg Alignment from Pairagon CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG agggactgtgttgaatttgtactacagatgccattaaccctgttttctagCCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGCAgtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg Alignment from Exonerate_protein2genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG agggactgtgttgaatttgtactacagatgccattaaccctgttttctagCCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGCAgtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg Alignment from Exonerate_coding2genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG agggactgtgttgaatttgtactacagatgccattaaccctgttttctagCCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGCAgtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg Alignment from GeneWise CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG agggactgtgttgaatttgtactacagatgccattaaccctgttttctagCCTCGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAATGGGTGCCTACCTGAGGGCAAGCTGGTCACTGCCAAGGTTCTGCAgtaacagtctgctctccttgcactcttggtccatcagacccctttcgctg #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAAcgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCT------GGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAAcgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA------GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA------GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tgtgatccctccgaagtgctacactccatactgagcttgggtggtcctagGAAGCTGGAGAGCTGTACAACCGGATGCTCAAACGGTTCCGGCAGGAGAAGGCTGTCTGGGTCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCTTGCCTGCCAAGGAACgtaaatgcttttcctggcacctgatcacactcagactgatagatacttaa #### Pdcd4_ID11398_5 --> 0 - 0 Original Alignment GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg Alignment from CESAR GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg Alignment from Spaln_aa2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg Alignment from Spaln_nt2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg Alignment from Pairagon GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg Alignment from Exonerate_protein2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg Alignment from Exonerate_coding2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg Alignment from GeneWise GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG aaagtgtaactgagctagagagaggtggtattattatttttacatttcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAGAGTGGTGTGCCGGTGTTGGCAGTGTCTTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCACAGgtaagggtcttccttttgctcgttccctttggctcctctgaatcaaagtg #### Pde6c_ID7541_11 --> 0 - 0 Original Alignment AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat Alignment from CESAR AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat Alignment from Spaln_aa2Genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat Alignment from Spaln_nt2Genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat Alignment from Pairagon AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat Alignment from Exonerate_protein2genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat Alignment from Exonerate_coding2genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat Alignment from GeneWise AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG gacagaaatcattgtagggactccacacttctccttcctggtgcttctagAGGTTTAAAGAGAAGTTAAATGTAGAAGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTGgtgaatgtttctttctttctgatccgggtgtccttttaaataaaacctat #### Pde6c_ID7548_18 --> 1 - 0 Original Alignment gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcaggGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAAAGTCAGgtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt Alignment from CESAR gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcaggGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAAAGTCAGgtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt Alignment from Spaln_aa2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcagGGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAAAGTCAGgtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt Alignment from Spaln_nt2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcagGGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGgtgcaaagtcaggtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt Alignment from Pairagon GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcagGGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAAAGTCAGgtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt Alignment from Exonerate_protein2genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcagGGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAAAGTCAGgtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt Alignment from Exonerate_coding2genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcagGGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAAAGTCAGgtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt Alignment from GeneWise GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG tttttgtatttaatatttattggcttagctcacgactcgctccgctgcagGGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAAAGTCAGgtagctcttacagtatgtcctcccctgtcacacacgtgtgacctgttggt #### Pdlim1_ID7883_6 --> 2 - 2 Original Alignment ggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTgt acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTgtgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt Alignment from CESAR ggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTgt acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTgtgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt Alignment from Spaln_aa2Genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGTgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt Alignment from Spaln_nt2Genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGTgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt Alignment from Pairagon GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGTgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt Alignment from Exonerate_protein2genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGTgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt Alignment from Exonerate_coding2genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGTgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt Alignment from GeneWise GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT acttcaccctctacttcctggctaacctctgtgactgtttgtgttcacagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGCAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGTgtgggcattggctttacttgtgttagagagtgcacaaaccatgaaagtgt #### Pdlim1_ID7886_4 --> 0 - 2 Original Alignment GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGcc gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGccgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc Alignment from CESAR GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGcc gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGccgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc Alignment from Spaln_aa2Genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGCCgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc Alignment from Spaln_nt2Genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGCCgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc Alignment from Pairagon GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGCCgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc Alignment from Exonerate_protein2genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGCCgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc Alignment from Exonerate_coding2genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGCCgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc Alignment from GeneWise GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC gggtttaggatccatagctccttgtcatttgttcaattgtggttgcttagGAAGTCCTGCACATAGGAAGTGCCCACAACCGCAGTGCCATGCAATTTACTGCCTCACCTGCTCCCAGCACCCGCGTCATCACAAACCAGTACAACAGCCCAACTGGCCTATACTCATCCGAAAACATCTCTAACTTCAATAATGCTGTGGAGTCGAAGACCTCAGCCAGCGGGGAGGAGGCGAACAGCAGGCCgtatgtagaactctgaggccttcagggtctgggaaagcgagactctttcc #### Pdzd8_ID12952_4 --> 0 - 1 Original Alignment GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAggtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga Alignment from CESAR GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAggtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga Alignment from Spaln_aa2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga Alignment from Spaln_nt2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga Alignment from Pairagon GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga Alignment from Exonerate_protein2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga Alignment from Exonerate_coding2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga Alignment from GeneWise GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tacattacttttatatcaatgatttcctttactgaggtgacttttcacagGTTGAATTAATAAAAGGGAATTTACAAAGCGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagtacacactgtatagtttaacatacgtgtacagagaaactacaaga #### Pdzd8_ID12954_3 --> 1 - 0 Original Alignment gTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagaTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg Alignment from CESAR gTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagaTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg Alignment from Spaln_aa2Genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagATTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg Alignment from Spaln_nt2Genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagATTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg Alignment from Pairagon GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagATTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg Alignment from Exonerate_protein2genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagATTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg Alignment from Exonerate_coding2genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagATTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg Alignment from GeneWise GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG tattgcgtataattggtatagtacccttgctttcttttctcacttgatagATTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCGCTGCACACTTGAGCTGAGTAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACAgtgagttgcatagttttgcatttatgtaagatttatcctgtaagtatggg #### Peli3_ID757_5 --> 0 - 0 Original Alignment GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca Alignment from CESAR GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca Alignment from Spaln_aa2Genome GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca Alignment from Spaln_nt2Genome GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca Alignment from Pairagon GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca Alignment from Exonerate_protein2genome GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca Alignment from Exonerate_coding2genome GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca Alignment from GeneWise GAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG acattctgggaactcttggagttgtgagggttgtctgttggggtgcccagGAGCGGGCAGCCAAATGGAGAACTCCGGATGGTCTGATGGATGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGTGGGAATGTGTACACGCTGCGTGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGgtactgggcctcctccatttctccccactctttccaggcctgcagcatca #### Peli3_ID758_4 --> 0 - 0 Original Alignment ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg Alignment from CESAR ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg Alignment from Spaln_aa2Genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg Alignment from Spaln_nt2Genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg Alignment from Pairagon ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg Alignment from Exonerate_protein2genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg Alignment from Exonerate_coding2genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg Alignment from GeneWise ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgagaacatagtgaaatttgcctgtgctgttccccatacccaccctagATTGGCCACTCTACCGAAAACATGATTGACTTTGTAGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGTgtgagcgattgccctcagtattgctagcccttcaacagagagctgacggg #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG actctgggttttctacatagcactgcctaatgttttgttttctctttcagTACTTCCTAAAGTGTGACACCATCAACACCTTGCCTGATATTGTCTTCACCATTGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATTCGAAAGgtaagcaattcggcagtgggtgtgctcttcatcaggctttggtttctatg #### Pga5_ID2973_5 --> 0 - 2 Original Alignment ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCag agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCaggtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt Alignment from CESAR ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCag agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCaggtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt Alignment from Spaln_aa2Genome ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCAG agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCAGgtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt Alignment from Spaln_nt2Genome ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCAG agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCAGgtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt Alignment from Pairagon ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCAG agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCAGgtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt Alignment from Exonerate_protein2genome ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCAG agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCAGgtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt Alignment from Exonerate_coding2genome ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCAG agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCAGgtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt Alignment from GeneWise ATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTGGGGCTGGGATACCCCAACCTTGGCCTTCAGGGAATCACACCCGTCTTTGACAACCTGTGGCTACAAGGCCTCATCCCCCAGAATCTCTTTGCCTTCTACTTGAGCAG agacatcccacagccctggtttcagaccttactctctcttaaaacctcagATTGGGGACCTCACGGTTGTGGCCCAGGCCTTTGGCCTGAGCCTGGAAGAACCTGGCATTTTCATGGAATATGCTGTCTTTGATGGTATCCTTGGGCTGGGATACCCCAACCTTGGCCTTCAGGGCATCACACCCATCTTTGACAACCTGTGGCTACAAGGGCTCATTCCCCAGAATCTCTTTGCCTTCTACTTGAGCAGgtaagatgtgcttgagtcctgcttctctcagcactagtctgggccatctt #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagctCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagctCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat #### Pga5_ID2976_2 --> 1 - 0 Original Alignment aATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagaATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt Alignment from CESAR aATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagaATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt Alignment from Spaln_aa2Genome AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagAATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt Alignment from Spaln_nt2Genome AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagAATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt Alignment from Pairagon AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagAATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt Alignment from Exonerate_protein2genome AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagAATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt Alignment from Exonerate_coding2genome AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagAATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt Alignment from GeneWise AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC tgccccttggctgtctctcacttaatttagccctcttctcctctctccagAATCCCTCTGATGAAGATCAAGTCCATGCGTGAAAATCTGCGGGAAAGCCAAGTGCTGAAGGATTACTTGGAGAAGTACCCCCGAAGCCGTGCCCATGTGCTTCTTGAGCAACGCCGGAACCCAGCTGTAACTTATGAGCCTATGAGGAACTACCTAGACgttagtgtgacaggagccaggcctctcaagaatccccttaggggtcttgt #### Pi4k2a_ID8403_6 --> 0 - 1 Original Alignment GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAtgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt Alignment from CESAR GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAtgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt Alignment from Spaln_aa2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt Alignment from Spaln_nt2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt Alignment from Pairagon GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt Alignment from Exonerate_protein2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt Alignment from Exonerate_coding2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt Alignment from GeneWise GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ctattgtagagggcctgcctcctgcctgtgccttctaccccacttgacagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtaggtccaagagcactggactttgccccgtttgttgctgcagtagggtt #### Pik3ap1_ID8155_14 --> 2 - 1 Original Alignment acCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAa aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagacCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAagtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc Alignment from CESAR acCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAa aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagacCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAagtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc Alignment from Spaln_aa2Genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagACCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAAgtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc Alignment from Spaln_nt2Genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagACCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAAgtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc Alignment from Pairagon ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagACCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAAgtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc Alignment from Exonerate_protein2genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagACCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAAgtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc Alignment from Exonerate_coding2genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagACCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAAgtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc Alignment from GeneWise ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA aggagaaagatgaacaatgccatttggcctcaccaccctggatttttcagACCTGGAGATCACAGTCCCCATCAGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGTGTGTATGAGAGTGGCCCCAGGAAGAGTGTCTTGCCAGCCAGGACAGAGCTGAGACGTGGGGATTGGAAAATGGACAGCATGTCTAGCACAGCAAgtgagtaggaagcctgggcaccctgcctcctgcagcaagccaggggtgcc #### Pik3ap1_ID8158_11 --> 2 - 1 Original Alignment ttTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAg tccctgagaaaggcatctcgcttccactggactctcccatccttccctagttTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAggtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg Alignment from CESAR ttTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAg tccctgagaaaggcatctcgcttccactggactctcccatccttccctagttTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAggtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg Alignment from Spaln_aa2Genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tccctgagaaaggcatctcgcttccactggactctcccatccttccctagTTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAGgtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg Alignment from Spaln_nt2Genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tccctgagaaaggcatctcgcttccactggactctcccatccttccctagTTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAGgtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg Alignment from Pairagon TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tccctgagaaaggcatctcgcttccactggactctcccatccttccctagTTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAGgtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg Alignment from Exonerate_protein2genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tccctgagaaaggcatctcgcttccactggactctcccatccttccctagTTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAGgtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg Alignment from Exonerate_coding2genome TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tccctgagaaaggcatctcgcttccactggactctcccatccttccctagTTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAGgtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg Alignment from GeneWise TTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTTTCTTCTGAGAGCATCAGAAAAG tccctgagaaaggcatctcgcttccactggactctcccatccttccctagTTTTTGCAGAAAAAAGTCAGGAGCGGCTCGGGAATTTCTACGTCTCTTCTGAGAGCATCAGAAAAGgtgagccagggtgtgcccttgacttcctacacacaagcggaatttccagg #### Pik3ap1_ID8161_8 --> 0 - 1 Original Alignment GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCt cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTtgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt Alignment from CESAR GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCt cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTtgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt Alignment from Spaln_aa2Genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTTgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt Alignment from Spaln_nt2Genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTTgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt Alignment from Pairagon GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTTgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt Alignment from Exonerate_protein2genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTTgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt Alignment from Exonerate_coding2genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTTgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt Alignment from GeneWise GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cccagctagctagcttccttagttggcaacacttcatatttcctttgcagGAAACAGTGGACATGCTGAAGACATACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGATGATGTGTATGAGTCTATGGCCCACCTATCCACAGACCTGCTAATGAAGTGCTCCCTCAACCCTGGCTGTGATGATGAGCTCTACAAGTCCATGGCTGCCTTTGCCCCAGCAGCCACAGAAGACCTTTgtaggtagctctgcctggttctgcttttgttctactgctgagaaatggtt #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG ccggaaaggaagaagtgctgtatacacaacaaatcctctttatgttttagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc Alignment from GeneWise ------------------------------------------------CGGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG CCGGAAAGGAAGAAGTGCTGTATACACAACAAATCCTCTTTATGTTTTAGGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtgagtccttctggggtccctgtgtttcagcactaagcgaacccagactc #### Pitpnm1_ID308_5 --> 2 - 1 Original Alignment gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacaggtCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAggtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct Alignment from CESAR gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacaggtCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAggtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct Alignment from Spaln_aa2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacagGTCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAGgtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct Alignment from Spaln_nt2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacagGTCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAGgtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct Alignment from Pairagon GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacagGTCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAGgtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct Alignment from Exonerate_protein2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacagGTCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAGgtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct Alignment from Exonerate_coding2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacagGTCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAGgtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct Alignment from GeneWise GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagcttgtgtcccctcctaccttacagGTCTGCACAGGGTGATGCTTCGTGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTGAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCAGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAGgtgagcatggggtgaacgggccagaaatggtaatgacagggccccaccct #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagcCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagcCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagCCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagCCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagCCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagCCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagCCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ctgatagctgtggttaagctgaaaggtctttgtatgtgtgtgtgttttagCCTGAGCCCCTACAGCCATGATGGGGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCGCTACCAGGGTGCGGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCAGAGGGCACAGGTTTCTGTGGACAGgtgagtggttaggcatgttcccaagaggcagccagtacccatgcctgtgg #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcggtcgctgtgctttttccacagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACGGTCACACTGCCCCACCTCTTCCACGCCAGCTACTGGGAGTCAGCGGATGTAGTGGCCTTCATTCTGCGCCAGgtgagtgaacccagggatgtgggcctaaagctgggacggctaggactatg #### Pkd2l1_ID8956_12 --> 1 - 0 Original Alignment aCTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagaCTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg Alignment from CESAR aCTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagaCTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg Alignment from Spaln_aa2Genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagACTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg Alignment from Spaln_nt2Genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagACTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg Alignment from Pairagon ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagACTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg Alignment from Exonerate_protein2genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagACTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg Alignment from Exonerate_coding2genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagACTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg Alignment from GeneWise ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG tgggagtggtttgagtggttacagttgcctgctttgtctcccatctccagACTGGGGCATGAGGAGCACGAGATCACTGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGgtaagtaggaccacttagtgggtgagacgtagatacatatgctttacttg #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCatgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCatgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Exonerate_coding2genome ATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagatATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag #### Pkd2l1_ID8961_7 --> 0 - 0 Original Alignment CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc Alignment from CESAR CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc Alignment from Spaln_aa2Genome CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc Alignment from Spaln_nt2Genome CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc Alignment from Pairagon CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc Alignment from Exonerate_protein2genome CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc Alignment from Exonerate_coding2genome CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc Alignment from GeneWise CTCTCCATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTCAACCTTTTCTTTGCTTGGATCAAG ccttaagatccccttgaattctcacacaactgcacctctcttctcttcagCTTTCCATTGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAACAGCCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGGTGAACCTTTTCTTTGCTTGGATCAAGgtatttggacttgcccgcaaggcatccctcactccctcgccagcccctgc #### Pla2g16_ID2179_3 --> 2 - 0 Original Alignment gtGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacaggtGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca Alignment from CESAR gtGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacaggtGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca Alignment from Spaln_aa2Genome GTGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacagGTGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca Alignment from Spaln_nt2Genome GTGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacagGTGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca Alignment from Pairagon GTGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacagGTGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca Alignment from Exonerate_protein2genome GTGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacagGTGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca Alignment from Exonerate_coding2genome GTGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacagGTGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca Alignment from GeneWise GTGAAATCGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGGAAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGTGAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAG ccctgtggccccttccaggatcaaccccaactgttctctctttcctacagGTGAAATTGCAGGAGCTGGGGCAGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTTAAAAAAGAACTGCTGTGCCATGTGGCTGGGAAGGACAAGTACCAGGTCAATAACAAACATGATGAGGAGTACACCCCGCTGCCTCTGAGCAAGATCATCCAGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGTGAGAACTGTGAGCACTTTGTGAATGAACTACGCTACGGAGTTCCTCGGAGTGATCAGgtgagtctccgtccaagtaccttgaccttaggtgttaggtcctttaccca #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gtgaccatcgtccaacctctgagtctcccttcataactactttttcttaggGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTGTATGGCCACTGGgtgtgagaccactgagtgaggggacgcagggacagagcttagccctgactca Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gtgaccatcgtccaacctctgagtctcccttcataactactttttcttaggGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAgtgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgacttg Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgactca Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgactca Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgactca Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgactca Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgactca Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgactca #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAggtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAggtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagatTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagatTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca #### Plcb3_ID1921_10 --> 2 - 1 Original Alignment acCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTg gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagacCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCggtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact Alignment from CESAR acCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTg gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagacCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCggtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact Alignment from Spaln_aa2Genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCGgtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact Alignment from Spaln_nt2Genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCGgtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact Alignment from Pairagon ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCGgtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact Alignment from Exonerate_protein2genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCGgtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact Alignment from Exonerate_coding2genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCGgtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact Alignment from GeneWise ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccaccaagcccagctgactttttagtgccctccttctagACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTAGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACTCAGCCACTGAGCGCATATTTTATCAACTCGTCACATAACACTTATCTCACCGgtacgtgagacagtgtggggtgtgaccatgcacatccttaccctcacact #### Plce1_ID7607_2 --> 0 - 1 Original Alignment ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAggtacactttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from CESAR ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAggtacactttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Spaln_aa2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAGgtacactttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Spaln_nt2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAGgtacactttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Pairagon ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAGgtacactttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Exonerate_protein2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAGgtacactttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Exonerate_coding2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAGgtacactttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from GeneWise ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG ttttactaagaaactagattaatacttcctctgtgctctctcccctgcagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTCCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTACAAAGAACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTTGGAGGTTCCACTGGACGAATTATGCTGAAAGgtacactttggaatatcattttcagcttttcagatttgcctttagagaac #### Plce1_ID7625_11 --> 1 - 2 Original Alignment tGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCag aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagtGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCaggtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg Alignment from CESAR tGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCag aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagtGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCaggtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg Alignment from Spaln_aa2Genome TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagTGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCAGgtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg Alignment from Spaln_nt2Genome TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagTGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCAGgtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg Alignment from Pairagon TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagTGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCAGgtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg Alignment from Exonerate_protein2genome TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagTGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCAGgtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg Alignment from Exonerate_coding2genome TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagTGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCAGgtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg Alignment from GeneWise TGCCTGGAGCAGCAGCAGCTGGCATGGGCGAATCCGAGGAGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGTTTCGTTGAATTCGTCGAGCTGTTCAAATCATTCAG aggatggcttagggactgaacttgccagcttaattttgtgtttcccttagTGCTTGGAGCAGCAGCAGCTGGCATGGCAGAATCCGAGGGGGAATGCAAGGCTTCCAGAGCTTCATGGTCTCAGACAGTAACATGAGCTTCGTTGAATTCGTCGACCTGTTCAAATCATTCAGgtaagtcatggtccttcctcttacatactcttcttccgacccacggttgg #### Plce1_ID7627_13 --> 2 - 0 Original Alignment atTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagatTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat Alignment from CESAR atTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagatTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat Alignment from Spaln_aa2Genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagATTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat Alignment from Spaln_nt2Genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagATTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat Alignment from Pairagon ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagATTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat Alignment from Exonerate_protein2genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagATTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat Alignment from Exonerate_coding2genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagATTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat Alignment from GeneWise ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG gagctctatcaaagaggcctctgaatggcattctctttttttcctcttagATTTGCTGACTAAAAACGTCTCTGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACATCCCTGGGCATATTTGGCGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCACTGCACATATGATGAAATCCTGAGCATCATCCAGgtgagtcatgtatggcatgtatgacacatcatgtatggcatatatgatat #### Plce1_ID7639_22 --> 2 - 1 Original Alignment gcCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAg cctcttgcccgtagcttttggctttttttcaatacttttatctcctctaggcCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAggtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact Alignment from CESAR gcCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAg cctcttgcccgtagcttttggctttttttcaatacttttatctcctctaggcCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAggtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact Alignment from Spaln_aa2Genome GCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAG cctcttgcccgtagcttttggctttttttcaatacttttatctcctctagGCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAGgtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact Alignment from Spaln_nt2Genome GCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAG cctcttgcccgtagcttttggctttttttcaatacttttatctcctctagGCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAGgtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact Alignment from Pairagon GCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAG cctcttgcccgtagcttttggctttttttcaatacttttatctcctctagGCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAGgtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact Alignment from Exonerate_protein2genome GCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAG cctcttgcccgtagcttttggctttttttcaatacttttatctcctctagGCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAGgtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact Alignment from Exonerate_coding2genome GCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAG cctcttgcccgtagcttttggctttttttcaatacttttatctcctctagGCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAGgtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact Alignment from GeneWise GCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAG cctcttgcccgtagcttttggctttttttcaatacttttatctcctctagGCCTGTCAACTCTAAATTCATCTGGCTCTAGCAGAGGGAAAGAAAGGAAAAGCAGGAAGTCCATTTTTGGCAACAATCCTGGCAGAATGAGCCCCGGGGAGACAGCGCCATTTAACAGAACATCTGGAAAAGgtaagtttgccttctctaagtatctttgcttggtcttgcatgccatcact #### Plekhs1_ID12097_2 --> 2 - 0 Original Alignment gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG ctgaaatttatgaaacaacaaactgaattggtttatcatttattctgcaggcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt Alignment from CESAR gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG ctgaaatttatgaaacaacaaactgaattggtttatcatttattctgcaggcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt Alignment from Spaln_aa2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG ctgaaatttatgaaacaacaaactgaattggtttatcatttattctgcagGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt Alignment from Spaln_nt2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG ctgaaatttatgaaacaacaaactgaattggtttatcatttattctgcagGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt Alignment from Pairagon GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG ctgaaatttatgaaacaacaaactgaattggtttatcatttattctgcagGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt Alignment from Exonerate_protein2genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG ctgaaatttatgaaacaacaaactgaattggtttatcatttattctgcagGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt Alignment from Exonerate_coding2genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG ctgaaatttatgaaacaacaaactgaattggtttatcatttattctgcagGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt Alignment from GeneWise GAAGCCAGACCTCCAAAAGGCCCAGGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG caaactgaattggtttatcatttat------------------TCTGCAGGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtaaggaatcgcagtggctttactaacctccaaccggctgcatgggcatt #### Plgrkt_ID6260_2 --> 0 - 2 Original Alignment CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACC---ATCTCTTTAGCAACTgg ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACAACC------CTAGCAACTgggtgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc Alignment from CESAR CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTgg ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACA---ACCCTAGCAACTgggtgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc Alignment from Spaln_aa2Genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACA---ACCCTAGCAACTGGgtgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc Alignment from Spaln_nt2Genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACAA---CCCTAGCAACTGGgtgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc Alignment from Pairagon CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACAA---CCCTAGCAACTGGgtgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc Alignment from Exonerate_protein2genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACA---ACCCTAGCAACTGGgtgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc Alignment from Exonerate_coding2genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACA---ACCCTAGCAACTGGgtgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc Alignment from GeneWise CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGGAG ggttctacagtggcaggtaaactacctggcttcttcttcatctgttgtagCTAGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAACAGCCATGCAGATTGCCTGGTCTCGGGAATTCCTCAAATATTTTGGGACATTTTTTGGCATTGCAACA---ACCCTAGCAACTGGGTgtgatttacaatttacttgtagagtttctgaaataacaaaccctttgc #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa cagaagctcttccctcccagctaacagtatttaatctttattcattctaggtTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCaagtagtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa cagaagctcttccctcccagctaacagtatttaatctttattcattctaggtTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCaagtagtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cagaagctcttccctcccagctaacagtatttaatctttattcattctagGTTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCAAgtagtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cagaagctcttccctcccagctaacagtatttaatctttattcattctagGTTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCAAgtagtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cagaagctcttccctcccagctaacagtatttaatctttattcattctagGTTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCAAgtagtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cagaagctcttccctcccagctaacagtatttaatctttattcattctagGTTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCAAgtagtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA cagaagctcttccctcccagctaacagtatttaatctttattcattctagGTTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCAAgtagtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAG-- cagaagctcttccctcccagctaacagtatttaatctttattcattctagGTTGGCGGTACCAGGTGACTGTCACCCTTTCTGGACAGAAGGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAACAGTATGAAGTTTTCAAGTAgtgaaaggtttaaagcatcactcggtgcttcttacattcaagtaggt #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagggAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagggAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc #### Pnliprp1_ID12769_6 --> 2 - 1 Original Alignment gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGg aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcaggaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGggtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt Alignment from CESAR gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGg aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcaggaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGggtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt Alignment from Spaln_aa2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGgtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt Alignment from Spaln_nt2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGgtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt Alignment from Pairagon GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGgtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt Alignment from Exonerate_protein2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGgtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt Alignment from Exonerate_coding2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGgtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt Alignment from GeneWise GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aacctgtccctcatcaacctacactttgtaacttctgtgttattgttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTGGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGgtcagtcctgtggtgctctggcctctagctgtggggaagagtagggatgt #### Pnliprp1_ID12771_8 --> 2 - 0 Original Alignment gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagggACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct Alignment from CESAR gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagggACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct Alignment from Spaln_aa2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagGGACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct Alignment from Spaln_nt2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagGGACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct Alignment from Pairagon GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagGGACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct Alignment from Exonerate_protein2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagGGACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct Alignment from Exonerate_coding2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagGGACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct Alignment from GeneWise GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacagcctgccattaatcacctgggctggccatcttcccctgctccacagGGACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTATTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTgtaagtatctattcttgccaagaatgaggagcaccacacttagaggtcct #### Pnliprp1_ID12774_11 --> 1 - 2 Original Alignment gGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAga tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcaggGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAgagtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc Alignment from CESAR gGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAga tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcaggGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAgagtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc Alignment from Spaln_aa2Genome GGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGA tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcagGGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAGAgtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc Alignment from Spaln_nt2Genome GGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGA tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcagGGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAGAgtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc Alignment from Pairagon GGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGA tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcagGGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAGAgtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc Alignment from Exonerate_protein2genome GGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGA tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcagGGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAGAgtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc Alignment from Exonerate_coding2genome GGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGA tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcagGGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAGAgtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc Alignment from GeneWise GGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGA tcggaactttacagtgtgctacaggaatttccaacctctctccgttgcagGGGAATTATCAAGCCCGGTGCTATGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACCATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGTGCAGCCAAGGTCACCGTGCAAAAGGGGGAAGAGCGGACAGAgtatctatatgtgttgtctggtgatgtttacagagtgctatacgctctgc #### Pnliprp2_ID12779_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagggAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca Alignment from CESAR ggAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagggAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagGGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagGGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca Alignment from Pairagon GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagGGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagGGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagGGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca Alignment from GeneWise GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA caccttatgcctgtcctttttgtggtttctaatggttctctggcccacagGGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAATGAGAATCCAAACAACTACCAAgtaagcgtcagagttcttgtctctaagggtcataagccttgagtatctca #### Pnliprp2_ID12786_8 --> 2 - 0 Original Alignment gaACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctataggaACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct Alignment from CESAR gaACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctataggaACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct Alignment from Spaln_aa2Genome GAACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctatagGAACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct Alignment from Spaln_nt2Genome GAACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctatagGAACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct Alignment from Pairagon GAACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctatagGAACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct Alignment from Exonerate_protein2genome GAACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctatagGAACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct Alignment from Exonerate_coding2genome GAACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctatagGAACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct Alignment from GeneWise GAACTCGAAACTTCGCAGCCTGCAACCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGACGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCAC acctgaaggtgaggtctcctctctcattgatctggcatttctgcctatagGAACTCGAAACTTTGCAGCCTGCAATCACCTACGGAGCTACAAGTACTATGCCAGCAGCATCCTCAACCCTGATGGCTTCCTGGGGTACCCCTGTTCCTCCTATGAGAAGTTCCAGCATgtaaaatgctccagagcccaagacagtaaagcttggtgatcttgctggct #### Pnliprp2_ID12787_9 --> 0 - 1 Original Alignment AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTcgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg Alignment from CESAR AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTcgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg Alignment from Spaln_aa2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTCgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg Alignment from Spaln_nt2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTCgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg Alignment from Pairagon AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTCgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg Alignment from Exonerate_protein2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTCgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg Alignment from Exonerate_coding2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTCgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg Alignment from GeneWise AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC gcatgacctggggtaaggtctcccactagagcttcctgtctgttgcccagAATGACTGCTTCCCTTGCCCAGAACAAGGGTGCCCCAATATGGGGCACTATGCTGACCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGCGGTAATTTCACTCgtaggtgtccattgcttgtatgcagcatggggggtgtgtgtgtgtgcatg #### Pnliprp2_ID12789_11 --> 1 - 2 Original Alignment aGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAga ccatgtatccacacacccggctgagatgttagccacctctgccttcacagaGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAgagtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt Alignment from CESAR aGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAga ccatgtatccacacacccggctgagatgttagccacctctgccttcacagaGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAgagtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt Alignment from Spaln_aa2Genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccatgtatccacacacccggctgagatgttagccacctctgccttcacagAGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAGAgtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt Alignment from Spaln_nt2Genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccatgtatccacacacccggctgagatgttagccacctctgccttcacagAGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAGAgtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt Alignment from Pairagon AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccatgtatccacacacccggctgagatgttagccacctctgccttcacagAGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAGAgtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt Alignment from Exonerate_protein2genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccatgtatccacacacccggctgagatgttagccacctctgccttcacagAGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAGAgtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt Alignment from Exonerate_coding2genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccatgtatccacacacccggctgagatgttagccacctctgccttcacagAGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAGAgtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt Alignment from GeneWise AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccatgtatccacacacccggctgagatgttagccacctctgccttcacagAGGATCCCTCCAACCGGAAGCAAGATATATTTGTGACATTGATGTGGATGTCAACATTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTCATTAATCTCTTCCGGCCTACTATGGGAGCTTCACAAATCACAGAGCAACATGGGAAAGACGGGAAAGAgtgtgtatctgacattttttccatgtctggttgaatttatggccctctgt #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag tgactagtaacctggtctatcccccccctttgttagttctgttttcctagcTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAaggtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag tgactagtaacctggtctatcccccccctttgttagttctgttttcctagcTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAaggtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatcccccccctttgttagttctgttttcctagCTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAAGgtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatcccccccctttgttagttctgttttcctagCTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAAGgtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatcccccccctttgttagttctgttttcctagCTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAAGgtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatcccccccctttgttagttctgttttcctagCTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAAGgtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca Alignment from Exonerate_coding2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatcccccccctttgttagttctgttttcctagCTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAAGgtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatcccccccctttgttagttctgttttcctagCTCTTCAGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATTCTGACGCAGAGAAGgtaaggggtgtcctgccaaccccaagaggaatggaccatatttataagca #### Pola2_ID1333_8 --> 0 - 0 Original Alignment GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg Alignment from CESAR GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg Alignment from Spaln_aa2Genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg Alignment from Spaln_nt2Genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg Alignment from Pairagon GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg Alignment from Exonerate_protein2genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg Alignment from Exonerate_coding2genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg Alignment from GeneWise GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG ctaaaacctgtgccatttcaggttcactgcctgtgcatctcttcccacagGAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCTGTGATTCTTGAGGGGGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAGgtgagttcagagctttctgggatagtaagaatttttattttactttttgg #### Pola2_ID1335_6 --> 1 - 1 Original Alignment tGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAg ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagtGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAggtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag Alignment from CESAR tGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAg ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagtGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAggtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag Alignment from Spaln_aa2Genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagTGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAGgtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag Alignment from Spaln_nt2Genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagTGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAGgtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag Alignment from Pairagon TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagTGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAGgtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag Alignment from Exonerate_protein2genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagTGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAGgtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag Alignment from Exonerate_coding2genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagTGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAGgtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag Alignment from GeneWise TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ggtagccgagggcagtcacagtgattccaccagcctctctcgcaccccagTGCTACCCCCTCCCAGAAATACACCTCCAGAACCAAGCGGGGGGAAGTGGTGACCACCTTTGGCTCCGCACAGGGTTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCAATGTTTCAGCAGCTCATGGGTGTTGGAGAAGgtgagtgggtttctcttggacggcctcaaaggctcccaaccccgcgggag #### Pola2_ID1336_5 --> 0 - 2 Original Alignment GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGag tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGaggtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct Alignment from CESAR GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGag tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGaggtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct Alignment from Spaln_aa2Genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGAGgtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct Alignment from Spaln_nt2Genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGAGgtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct Alignment from Pairagon GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGAGgtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct Alignment from Exonerate_protein2genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGAGgtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct Alignment from Exonerate_coding2genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGAGgtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct Alignment from GeneWise GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG tgaagccagagtgggagtgggtggggtttgacccgtggcgtcctccgcagGGTCCTCTCAAGCGAGTTAGCAGCACTCCAGAAACCCCCCTAGCCAAAAGAAGCGTCTCAGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTACTCCCCGAGgtaaaaatcagaaccaattcaggtgccaagaaagccatacctctaactct #### Pola2_ID1337_4 --> 1 - 0 Original Alignment aATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagaATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt Alignment from CESAR aATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagaATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt Alignment from Spaln_aa2Genome AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagAATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt Alignment from Spaln_nt2Genome AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagAATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt Alignment from Pairagon AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagAATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt Alignment from Exonerate_protein2genome AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagAATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt Alignment from Exonerate_coding2genome AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagAATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt Alignment from GeneWise AATTGAAGCAGAGGAGGAAGAGGAGACCCTCCTAAGCTCTTATACCACACCCTCTAAG aaatacctaacattcaacctatagttgcctctgtccactttacattaaagAATTGAAGCAGAGGGGGAAGAGGAGACTCTTCTAAGCTCTTATACCACACCTTCTAAGgtgagcatgtggcatgtgggaagtgcatcctacacataactttttgtttt #### Pola2_ID1338_3 --> 0 - 2 Original Alignment GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGct cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGctgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag Alignment from CESAR GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGct cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGctgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag Alignment from Spaln_aa2Genome GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCTgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag Alignment from Spaln_nt2Genome GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCTgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag Alignment from Pairagon GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCTgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag Alignment from Exonerate_protein2genome GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCTgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag Alignment from Exonerate_coding2genome GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCTgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag Alignment from GeneWise GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT cagcctatggaccaaatatattcaccattgtaattttcctcttcaatcagGTTCTCAACAAAAAACTTTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGCGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCTgtaaaattttctgctgaaggtctttggactaagcacctatatgtgctaag #### Pola2_ID1339_2 --> 2 - 0 Original Alignment tgGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagtgGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt Alignment from CESAR tgGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagtgGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt Alignment from Spaln_aa2Genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagTGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt Alignment from Spaln_nt2Genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagTGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt Alignment from Pairagon TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagTGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt Alignment from Exonerate_protein2genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagTGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt Alignment from Exonerate_coding2genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagTGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt Alignment from GeneWise TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG actgtttggccccaggctctcttttacttttgtttttcccttctttgtagTGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAACTGATCGCCTTCTGCACCAGTGCAGGGAAGACATGCCTCACTGTAGACATCCTGAACTCTTTTGAATATGAGgtgagagcaactgagaactatcacccctgcttcgtgcaggtcccagttgt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcaggtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from CESAR gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcaggtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Pairagon GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga #### Poll_ID9479_7 --> 0 - 1 Original Alignment GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAg ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAggtaagtattttgactttgggtgagccggctacccatgggcagccacctcc Alignment from CESAR GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAg ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAggtaagtattttgactttgggtgagccggctacccatgggcagccacctcc Alignment from Spaln_aa2Genome GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAG ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAGgtaagtattttgactttgggtgagccggctacccatgggcagccacctcc Alignment from Spaln_nt2Genome GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAG ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAGgtaagtattttgactttgggtgagccggctacccatgggcagccacctcc Alignment from Pairagon GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAG ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAGgtaagtattttgactttgggtgagccggctacccatgggcagccacctcc Alignment from Exonerate_protein2genome GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAG ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAGgtaagtattttgactttgggtgagccggctacccatgggcagccacctcc Alignment from Exonerate_coding2genome GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAG ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAGgtaagtattttgactttgggtgagccggctacccatgggcagccacctcc Alignment from GeneWise GTCCGGATATCAGCCCAGGCCTTCAACCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACGTGCGGGGATGTGGATGTACTCATTACTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGATAGCCTTCGGCAGCAAG ggtctcctgggagaggcctcagactctccagtgtgatgtttctttattagGTCCGGATATCTGCCCAGGCCTTCAATCCTGGGCTGCTGTGTGTGGCTTGTGGCTCTTACCGACGGGGGAAGATGACATGTGGAGATGTGGATGTACTCATTTCTCACCCCGATGGCCGATCCCACCGGGGCATCTTCAGCTGCCTCCTTGACAGCCTTCGGCAGCAAGgtaagtattttgactttgggtgagccggctacccatgggcagccacctcc #### Poll_ID9481_6 --> 0 - 0 Original Alignment GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa Alignment from CESAR GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa Alignment from Spaln_aa2Genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa Alignment from Spaln_nt2Genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa Alignment from Pairagon GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa Alignment from Exonerate_protein2genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa Alignment from Exonerate_coding2genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa Alignment from GeneWise GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG acttgcttggtcctgccttcatagcctccttttaggtcttgtacttgcagGGCTTCCGAAACCTCGAAGATCTCCAAAGCCTGGGCTCCCTGACTGCTCAGCAGGCCATTGGCTTGAAGCACTATGATGACTTCCTTGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACAgtcagtacagctcaagcctgggcaaccccacaggcagcggaagttaagaa #### Polr2g_ID2380_3 --> 1 - 0 Original Alignment aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagaTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg Alignment from CESAR aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagaTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg Alignment from Spaln_aa2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg Alignment from Spaln_nt2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg Alignment from Pairagon ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg Alignment from Exonerate_protein2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg Alignment from Exonerate_coding2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg Alignment from GeneWise ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG ggcttttcaggggctcttcacatagctgcaccccctcatgtcatttgcagATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTCAACAAGgtatttgaatttttcatagaaaggttatgtggtatttcctgagatgcggg #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagtgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTggtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagtgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTggtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG ccttgtccagtctgtgaggtcagggcccgtggactcttgtttttgtttagTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTAACAGAGAACGAGATTCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAGGCACCCCTCAAGATCTGTGgtgagccttgcatagaaccctttttccggaaaattgcccctgctagtgcc #### Ppp1r32_ID2841_10 --> 0 - 2 Original Alignment GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAgg ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAgggtaggactccttttctggttgaaagctgagagccatttgactgactcata Alignment from CESAR GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAgg ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAgggtaggactccttttctggttgaaagctgagagccatttgactgactcata Alignment from Spaln_aa2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAGGgtaggactccttttctggttgaaagctgagagccatttgactgactcata Alignment from Spaln_nt2Genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAGGgtaggactccttttctggttgaaagctgagagccatttgactgactcata Alignment from Pairagon GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAGGgtaggactccttttctggttgaaagctgagagccatttgactgactcata Alignment from Exonerate_protein2genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAGGgtaggactccttttctggttgaaagctgagagccatttgactgactcata Alignment from Exonerate_coding2genome GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAGGgtaggactccttttctggttgaaagctgagagccatttgactgactcata Alignment from GeneWise GAGCCCACAGGGTTCACTCTTAACAACCCCAGCTATGTTCGGAGTTCCTATGAACAGGACAGAGATCAGCGGTACCTGACCACCTACAACCAAGG ccatgctcccgagtcctgacctctcattcatctgtttttaacccttttagGAGCCAACGGGGTTCACTCTTAACAACCCCAGTTATGTTCGGAGTTCTTATGAACAGGACAGAGACCAGCGGTACCTGACCACCTATAACCAAGGgtaggactccttttctggttgaaagctgagagccatttgactgactcata #### Ppp6r3_ID71_21 --> 1 - 2 Original Alignment tGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAag ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagtGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAaggtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca Alignment from CESAR tGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAag ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagtGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAaggtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca Alignment from Spaln_aa2Genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAAGgtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca Alignment from Spaln_nt2Genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAAGgtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca Alignment from Pairagon TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAAGgtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca Alignment from Exonerate_protein2genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAAGgtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca Alignment from Exonerate_coding2genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAAGgtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca Alignment from GeneWise TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG ttggttgtggtgcctggtatgtaatgccaattgctcctgttatcttacagTGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAGGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTTCCGAGCAAAGgtaagtacactgccttcaccctctgaaggccctaccctgcctctgcttca #### Ppp6r3_ID77_16 --> 0 - 2 Original Alignment GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCag atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCaggtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg Alignment from CESAR GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCag atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCaggtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg Alignment from Spaln_aa2Genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCAGgtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg Alignment from Spaln_nt2Genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCAGgtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg Alignment from Pairagon GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCAGgtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg Alignment from Exonerate_protein2genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCAGgtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg Alignment from Exonerate_coding2genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCAGgtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg Alignment from GeneWise GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG atatgacttcagttgcctttttctctttacgatgtgtcttgtttctgcagGGAAATATTGCCCTATTTGAAGCATGTTGTAAAGAACGGATACAACAATTCGATGATGGTGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCTGAATCCCAGAGGAGGGCCAGgtgggacatggcttgccatgccaagtgattttcatgagacttgcacatgg #### Ppp6r3_ID78_15 --> 1 - 0 Original Alignment tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagtGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga Alignment from CESAR tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagtGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga Alignment from Spaln_aa2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagTGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga Alignment from Spaln_nt2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagTGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga Alignment from Pairagon TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagTGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga Alignment from Exonerate_protein2genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagTGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga Alignment from Exonerate_coding2genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagTGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga Alignment from GeneWise TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT tcaggggactgtttatagccatctatggcttttgaccatttgattcctagTGTTTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatactttctgttatgctctgtcactatctgccactagaga #### Ppp6r3_ID81_13 --> 0 - 0 Original Alignment GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt Alignment from CESAR GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt Alignment from Spaln_aa2Genome GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt Alignment from Spaln_nt2Genome GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt Alignment from Pairagon GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt Alignment from Exonerate_protein2genome GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt Alignment from Exonerate_coding2genome GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt Alignment from GeneWise GTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA gtcgaacacttttcaaagttaaatagttttgggtttatgttctttgacagGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGAGTTTCTCACAGGATTCCTCTTTACAGCAGgtaactcacaccaaaagcatagctatttgtttgcatcttaaatgtttagt #### Ppp6r3_ID85_9 --> 0 - 0 Original Alignment GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from CESAR GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Spaln_aa2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Spaln_nt2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAG---AGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Pairagon GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAG---AGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Exonerate_protein2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Exonerate_coding2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from GeneWise GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT gattgcttcagcattgagctgactgaagtgaatctgttgttttctcttagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGTCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtaagtattattcccccttattgtgttctccaaatgtgcagtgaattaca #### Ppp6r3_ID92_3 --> 0 - 0 Original Alignment ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg Alignment from CESAR ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg Alignment from Spaln_aa2Genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg Alignment from Spaln_nt2Genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg Alignment from Pairagon ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg Alignment from Exonerate_protein2genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg Alignment from Exonerate_coding2genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg Alignment from GeneWise ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT attgtatacctgaagttataaatctctcacttaggatttctgttccacagATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTTATTATAAAGCACGTAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATgtaaatagagattaaaacacttgctgggggcgctgttactttggccactg #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from GeneWise GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctgagtaactgcacttgctctccttatccctaccctttctcgtccagACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCAGAAGGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGACGTCTTTGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtatgctgtggggcctgtgaggtggctcattttgaggctccagggccagg #### Prkg1_ID6497_10 --> 1 - 0 Original Alignment aTATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagaTATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct Alignment from CESAR aTATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagaTATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct Alignment from Spaln_aa2Genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagATATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct Alignment from Spaln_nt2Genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagATATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct Alignment from Pairagon ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagATATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct Alignment from Exonerate_protein2genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagATATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct Alignment from Exonerate_coding2genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagATATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct Alignment from GeneWise ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tgtgttttcatatctaagtaatttccatcccttcgtctttcttcccacagATATGAAGCCGAAGCTGCCTTCTTTGCCAACCTGAAGCTGTCTGATTTTAACATCATCGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTGgtaaaggacttctttaaatgctctgaaaagctcttctcccttctcatcct #### Prkg1_ID6524_5 --> 1 - 0 Original Alignment tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa Alignment from CESAR tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa Alignment from Spaln_aa2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa Alignment from Spaln_nt2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa Alignment from Pairagon TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa Alignment from Exonerate_protein2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa Alignment from Exonerate_coding2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa Alignment from GeneWise TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG agttcccatgcagatgttcagtatctaccactggcctgtctactttgcagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtcagtgttttgatcttttgtgcatcttgagatggaacccagactgtgaa #### Prkg1_ID6564_3 --> 2 - 1 Original Alignment atGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGa acttgggagacaaattaggtaccctgcctggctattttgatttctttcagatGGGAAGGTTGAAGTCACAAAGGAAGGTGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGTTGGCTATACTTTACAACTGTACCCAAACAGCGACCATCAAAagtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg Alignment from CESAR atGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGa acttgggagacaaattaggtaccctgcctggctattttgatttctttcagatGGGAAGGTTGAAGTCACAAAGGAAGGTGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGTTGGCTATACTTTACAACTGTACCCAAACAGCGACCATCAAAagtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg Alignment from Spaln_aa2Genome ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA acttgggagacaaattaggtaccctgcctggctattttgatttctttcagATGGGAAGGTTGAAGTCACAAAGGAAGGTGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGTTGGCTATACTTTACAACTGTACCCAAACAGCGACCATCAAAAgtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg Alignment from Spaln_nt2Genome ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA acttgggagacaaattaggtaccctgcctggctattttgatttctttcagATGGGAAGGTTGAAGTCACAAAGGAAGGTGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGTTGGCTATACTTTACAACTGTACCCAAACAGCGACCATCAAAAgtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg Alignment from Pairagon ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA acttgggagacaaattaggtaccctgcctggctattttgatttctttcagATGGGAAGGTTGAAGTCACAAAGGAAGGTGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGTTGGCTATACTTTACAACTGTACCCAAACAGCGACCATCAAAAgtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg Alignment from Exonerate_protein2genome acttgggagacaaattaggtaccctgcctggctattttgatttctttcagatgggaaggttgaagtcacaaaggaaggtgtgaagctctgcaccatgggtcctggaaaagtgttcggggagttggctatactttacaactgtacccaaacagcgaccatcaaaagtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg Alignment from Exonerate_coding2genome acttgggagacaaattaggtaccctgcctggctattttgatttctttcagatgggaaggttgaagtcacaaaggaaggtgtgaagctctgcaccatgggtcctggaaaagtgttcggggagttggctatactttacaactgtacccaaacagcgaccatcaaaagtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg Alignment from GeneWise ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA acttgggagacaaattaggtaccctgcctggctattttgatttctttcagATGGGAAGGTTGAAGTCACAAAGGAAGGTGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGTTGGCTATACTTTACAACTGTACCCAAACAGCGACCATCAAAAgtgacgctcatttccctagttttcaccttttcgtgttgtcattctctctg #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgcccagcttttctcctgtgctcactctcaattttcttcttttgttatagtcTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAggtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg tgcccagcttttctcctgtgctcactctcaattttcttcttttgttatagtcTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAggtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcccagcttttctcctgtgctcactctcaattttcttcttttgttatagTCTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAGgtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcccagcttttctcctgtgctcactctcaattttcttcttttgttatagTCTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAGgtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcccagcttttctcctgtgctcactctcaattttcttcttttgttatagTCTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAGgtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcccagcttttctcctgtgctcactctcaattttcttcttttgttataGTCTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAGgtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca Alignment from Exonerate_coding2genome GATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcccagcttttctcctgtgctcactctcaattttcttcttttgttatAGTCTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAGgtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG tgcccagcttttctcctgtgctcactctcaatttTCTTCTTTTGTTATAGTCTCCAATGAGGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAGgtaagtgccagctgcaagttcaagcccagtgcagctcagcctccaagcca #### Prpf19_ID3051_10 --> 2 - 0 Original Alignment gtGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctaggtGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt Alignment from CESAR gtGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctaggtGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt Alignment from Spaln_aa2Genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctagGTGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt Alignment from Spaln_nt2Genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctagGTGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt Alignment from Pairagon GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctagGTGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt Alignment from Exonerate_protein2genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctagGTGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt Alignment from Exonerate_coding2genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctagGTGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt Alignment from GeneWise GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG agcgtacttaaaagcctggctcatttttattgtcttgtgtctccttctagGTGGGGCAGATAAAAATGTTGTTATCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACTAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAGgtgagtcactctcgaagttaccctgtggttttgagtctcagaactaattt #### Psat1_ID3962_7 --> 1 - 2 Original Alignment cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac Alignment from CESAR cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac Alignment from Spaln_aa2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac Alignment from Spaln_nt2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac Alignment from Pairagon CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac Alignment from Exonerate_protein2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac Alignment from Exonerate_coding2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac Alignment from GeneWise CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT tggcttttgggagctgaactaactggtgtttcctgtttgggttctggcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatatatactgtgaagtggagactctttcttgaaac #### Psat1_ID3963_6 --> 0 - 2 Original Alignment TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCag attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCaggtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat Alignment from CESAR TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCag attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCaggtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat Alignment from Spaln_aa2Genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCAGgtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat Alignment from Spaln_nt2Genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCAGgtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat Alignment from Pairagon TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCAGgtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat Alignment from Exonerate_protein2genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCAGgtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat Alignment from Exonerate_coding2genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCAGgtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat Alignment from GeneWise TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG attacagctgcttctaggttagccgacagtacacgttgttttacccctagTTTGGTGTGATTTTCACTGGTGCTCAGAAAAATGTTGGTTCTGCTGGGGTGATGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCATGCTTCAGgtgagtgtgggactctagtcatctttccaagtggaagttaaggagagcat #### Psat1_ID3964_5 --> 2 - 0 Original Alignment aaATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagaaATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc Alignment from CESAR aaATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagaaATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc Alignment from Spaln_aa2Genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagAAATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc Alignment from Spaln_nt2Genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagAAATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc Alignment from Pairagon AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagAAATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc Alignment from Exonerate_protein2genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagAAATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc Alignment from Exonerate_coding2genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagAAATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc Alignment from GeneWise AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgtcttccctataaaaaacggatgttttatgttttctttactcttctagAAATCCCAGACCCAAGCACCTGGAACCTCAACCCGGACACCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCATGGGGTCGAGTTTGACTTTGTTCCTGATGTCAAGGGTGCAGTGCTGGTCTGTGACATGTCCTTGAACTTCTTATCCAGTCCAGTGGATGTTTCCAAGgtgagaaagagtgaaaggttggattggaaccagtgaatgtttctttgagc #### Psat1_ID3966_3 --> 2 - 2 Original Alignment aaATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGct attatttttgaacttttatttttttctcatcctgcctttgaaccttccagaaATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGctgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg Alignment from CESAR aaATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGct attatttttgaacttttatttttttctcatcctgcctttgaaccttccagaaATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGctgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg Alignment from Spaln_aa2Genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT attatttttgaacttttatttttttctcatcctgcctttgaaccttccagAAATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg Alignment from Spaln_nt2Genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT attatttttgaacttttatttttttctcatcctgcctttgaaccttccagAAATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg Alignment from Pairagon AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT attatttttgaacttttatttttttctcatcctgcctttgaaccttccagAAATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg Alignment from Exonerate_protein2genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT attatttttgaacttttatttttttctcatcctgcctttgaaccttccagAAATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg Alignment from Exonerate_coding2genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT attatttttgaacttttatttttttctcatcctgcctttgaaccttccagAAATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg Alignment from GeneWise AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT attatttttgaacttttatttttttctcatcctgcctttgaaccttccagAAATGAGTCACCGGGCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacaagtattttcaaaaattttacctcatgttgtgtgtgtg #### Ptar1_ID5192_2 --> 1 - 1 Original Alignment aGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATg tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagaGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATggtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca Alignment from CESAR aGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATg tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagaGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATggtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca Alignment from Spaln_aa2Genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATGgtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca Alignment from Spaln_nt2Genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATGgtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca Alignment from Pairagon AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATGgtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca Alignment from Exonerate_protein2genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATGgtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca Alignment from Exonerate_coding2genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATGgtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca Alignment from GeneWise AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagagcagtaatctcttaaatgcctcgcctgtgtgtctttcccacagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGGAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATGgtgagtatgtgcagccaggcctgggaggagacctggcttggggatgaaca #### Ptar1_ID5193_3 --> 2 - 2 Original Alignment aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagaaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCaggtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag Alignment from CESAR aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagaaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCaggtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag Alignment from Spaln_aa2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag Alignment from Spaln_nt2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag Alignment from Pairagon AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag Alignment from Exonerate_protein2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag Alignment from Exonerate_coding2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag Alignment from GeneWise AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cggactctgttgagcagggccgtgtgcttcagtgcatttcttactttcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgaggtgtttccttcaggggtaaaatgacatttgtccacatctctgaag #### Pten_ID6742_2 --> 2 - 2 Original Alignment atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag atatttgtgtcattatgtattctgggtataacttttttggcccaacttagatATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAaggtaagtattcttgattttgtatttcttatattagtacattattttgatgt Alignment from CESAR atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag atatttgtgtcattatgtattctgggtataacttttttggcccaacttagatATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAaggtaagtattcttgattttgtatttcttatattagtacattattttgatgt Alignment from Spaln_aa2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG atatttgtgtcattatgtattctgggtataacttttttggcccaacttagATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAAGgtaagtattcttgattttgtatttcttatattagtacattattttgatgt Alignment from Spaln_nt2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG atatttgtgtcattatgtattctgggtataacttttttggcccaacttagATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAAGgtaagtattcttgattttgtatttcttatattagtacattattttgatgt Alignment from Pairagon ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG atatttgtgtcattatgtattctgggtataacttttttggcccaacttagATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAAGgtaagtattcttgattttgtatttcttatattagtacattattttgatgt Alignment from Exonerate_protein2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG atatttgtgtcattatgtattctgggtataacttttttggcccaacttagATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAAGgtaagtattcttgattttgtatttcttatattagtacattattttgatgt Alignment from Exonerate_coding2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG atatttgtgtcattatgtattctgggtataacttttttggcccaacttagATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAAGgtaagtattcttgattttgtatttcttatattagtacattattttgatgt Alignment from GeneWise ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG atatttgtgtcattatgtattctgggtataacttttttggcccaacttagATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTAAGgtaagtattcttgattttgtatttcttatattagtacattattttgatgt #### Pten_ID6747_5 --> 2 - 0 Original Alignment ttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat Alignment from CESAR ttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat Alignment from Spaln_aa2Genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagTTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat Alignment from Spaln_nt2Genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagTTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat Alignment from Pairagon TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagTTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat Alignment from Exonerate_protein2genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagTTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat Alignment from Exonerate_coding2genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagTTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat Alignment from GeneWise TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG tcttaaataaaaaatttaaaatttttttaatgggggtctttgttcttcagTTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTCTTAAAGGCACAAGAGGCCCTAGATTTTTATGGAGAAGTAAGGACTAGAGACAAAAAGgtgagttgtttacttcttccttcctccctctttgtcaaccaagaatttat #### Pten_ID6750_8 --> 0 - 0 Original Alignment GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg Alignment from CESAR GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg Alignment from Spaln_aa2Genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg Alignment from Spaln_nt2Genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg Alignment from Pairagon GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg Alignment from Exonerate_protein2genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg Alignment from Exonerate_coding2genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg Alignment from GeneWise GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG ctatttgtcgtacatttttaaataagtgcccttttatgcttcctttctagGACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAGgtaagacaaaaccatttgggggtgggagggtgtcttttattctgattgtg #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagctTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagctTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt Alignment from GeneWise CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG aagggagttactcacattggatccctaagccacgggtccttttgtttcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgaggcacccagaccccaaccttgtggtgcttagtcacaataaagaggt #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG tatcatctgctgtagttaattggtggggcatttcaaattcctttcaccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtgagtttctggcctgaaggcctctgtcttcctctctctagagtcccatg #### Pygm_ID1688_12 --> 1 - 0 Original Alignment cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from CESAR cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Spaln_aa2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Spaln_nt2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Pairagon CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Exonerate_protein2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Exonerate_coding2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from GeneWise CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc #### Pygm_ID1690_14 --> 0 - 1 Original Alignment GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACc ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACcgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta Alignment from CESAR GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACc ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACcgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta Alignment from Spaln_aa2Genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACCgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta Alignment from Spaln_nt2Genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACCgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta Alignment from Pairagon GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACCgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta Alignment from Exonerate_protein2genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACCgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta Alignment from Exonerate_coding2genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACCgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta Alignment from GeneWise GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC ttttgaagctgaagcccctctggtgatctataattttttctctttctcagGAAAACAAGTTGAAGTTCTCTGCATACCTTGAGAGGGAATATAAAGTCCACATTAACCCCAACTCTCTCTTTGATGTCCAGGTGAAAAGGATTCATGAGTGCAAGCGGCAGCTACTCAACTGCCTGCACATCATCACCTTGTATAACCgtaagaggctgggacccacccagagcctggcctcacccagagtaccagta #### Pyroxd2_ID8595_13 --> 1 - 1 Original Alignment gCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAg tagtccattctccccagtcctgaccctctgtttatccccgaccccactaggCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAggtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg Alignment from CESAR gCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAg tagtccattctccccagtcctgaccctctgtttatccccgaccccactaggCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAggtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg Alignment from Spaln_aa2Genome GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG tagtccattctccccagtcctgaccctctgtttatccccgaccccactagGCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAGgtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg Alignment from Spaln_nt2Genome GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG tagtccattctccccagtcctgaccctctgtttatccccgaccccactagGCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAGgtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg Alignment from Pairagon GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG tagtccattctccccagtcctgaccctctgtttatccccgaccccactagGCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAGgtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg Alignment from Exonerate_protein2genome GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG tagtccattctccccagtcctgaccctctgtttatccccgaccccactagGCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAGgtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg Alignment from Exonerate_coding2genome GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG tagtccattctccccagtcctgaccctctgtttatccccgaccccactagGCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAGgtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg Alignment from GeneWise GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG tagtccattctccccagtcctgaccctctgtttatccccgaccccactagGCCTATGATTGAACTCTGCATCCCTTCATCGCTTGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGTAAGGCCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAGgtaaggagagagagtaacacgagtaggtctcctacacactgcaggaggtg #### R3hcc1l_ID8550_4 --> 2 - 1 Original Alignment ctCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTg caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagctCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTggtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct Alignment from CESAR ctCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTg caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagctCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTggtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct Alignment from Spaln_aa2Genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagCTCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTGgtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct Alignment from Spaln_nt2Genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagCTCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTGgtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct Alignment from Pairagon CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagCTCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTGgtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct Alignment from Exonerate_protein2genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagCTCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTGgtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct Alignment from Exonerate_coding2genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagCTCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTGgtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct Alignment from GeneWise CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG caaatcctcatgtgcgccactttaattcccctttccttctctctgaacagCTCACGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCATTGACACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTGgtgagtctgtgacctctctgctgttgtttcttattaatgatgatgttgct #### Rab11fip2_ID13100_4 --> 1 - 0 Original Alignment tTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagtTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc Alignment from CESAR tTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagtTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc Alignment from Spaln_aa2Genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagTTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc Alignment from Spaln_nt2Genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagTTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc Alignment from Pairagon TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagTTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc Alignment from Exonerate_protein2genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagTTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc Alignment from Exonerate_coding2genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagTTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc Alignment from GeneWise TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgatatagactgtgccaaatttaacgttcctctccccaccccacccccagTTTTCATGTGAACCCAACAAGCAGTGAAGACCTCAGGAAAATCCCGgtaagataccaaggagcaaaaagatcaccagaaagcaagcctgacttctc #### Rab3il1_ID2653_8 --> 1 - 0 Original Alignment cACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagcACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa Alignment from CESAR cACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagcACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa Alignment from Spaln_aa2Genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa Alignment from Spaln_nt2Genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa Alignment from Pairagon CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa Alignment from Exonerate_protein2genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa Alignment from Exonerate_coding2genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa Alignment from GeneWise CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcacctttaaagtcagttttgttccatagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCATCGTCCTCCCGGGCTAGGgtaacccagccatccttcacctttgtgctgggcaacgctgtgtagtggaa #### Rab3il1_ID2654_9 --> 0 - 1 Original Alignment ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATggtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc Alignment from CESAR ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATggtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc Alignment from Spaln_aa2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc Alignment from Spaln_nt2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc Alignment from Pairagon ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc Alignment from Exonerate_protein2genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc Alignment from Exonerate_coding2genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc Alignment from GeneWise ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agtgtgaggggaatcctagtgggtcacacacctctttctgtggtttgtagATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtgagggccccctagtgatcttctctagaaatagtgcccatgggggaggc #### Rasgrp2_ID1708_7 --> 0 - 0 Original Alignment AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg Alignment from CESAR AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg Alignment from Spaln_aa2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg Alignment from Spaln_nt2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg Alignment from Pairagon AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg Alignment from Exonerate_protein2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg Alignment from Exonerate_coding2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg Alignment from GeneWise AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG tcctaaggagtgctgagtcacctggcctcttgttgctggttgggtcccagAGGCTGCTACAGCTGCAGAACTTCAACACACTCATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCTCGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATTAAGgtactgggtttgagctgttgcttctcatctgcagactccgcagtgcagtg #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat #### Rbm20_ID11377_4 --> 1 - 1 Original Alignment tGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGg tgatttcttgaagacactaagcccctccttccctcctctctgccttttagtGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGggtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc Alignment from CESAR tGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGg tgatttcttgaagacactaagcccctccttccctcctctctgccttttagtGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGggtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc Alignment from Spaln_aa2Genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG tgatttcttgaagacactaagcccctccttccctcctctctgccttttagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc Alignment from Spaln_nt2Genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG tgatttcttgaagacactaagcccctccttccctcctctctgccttttagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc Alignment from Pairagon TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG tgatttcttgaagacactaagcccctccttccctcctctctgccttttagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc Alignment from Exonerate_protein2genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG tgatttcttgaagacactaagcccctccttccctcctctctgccttttagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc Alignment from Exonerate_coding2genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG tgatttcttgaagacactaagcccctccttccctcctctctgccttttagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc Alignment from GeneWise TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG tgatttcttgaagacactaagcccctccttccctcctctctgccttttagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAACAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaaggggaaggggccctcagatgacagctgtgaacagtatgcaggcctc #### Rbm20_ID11380_7 --> 0 - 0 Original Alignment GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca Alignment from CESAR GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca Alignment from Spaln_aa2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca Alignment from Spaln_nt2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca Alignment from Pairagon GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca Alignment from Exonerate_protein2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca Alignment from Exonerate_coding2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca Alignment from GeneWise GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tggaatccttctggacactgatctctcatcccaccctgtctcactctcagGCCTTCTTGGAGATGGCTTACACAGAGGCCGCCCAGGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtgaggcatcctttcagtcagccattcaagaacccctctcttgtcagtca #### Rbm20_ID11383_10 --> 0 - 0 Original Alignment GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa Alignment from CESAR GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa Alignment from Spaln_aa2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa Alignment from Spaln_nt2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa Alignment from Pairagon GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa Alignment from Exonerate_protein2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa Alignment from Exonerate_coding2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa Alignment from GeneWise GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG tctggctctgcctactcctggtcttgttccctgtcttggtctccctgcagGCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGACCCAGAAAACACAAGGACAAAGAAGgtgcgtttgcacccccatcctagtgatggtgtcatacattagcatcagaa #### Rbp4_ID7522_5 --> 2 - 1 Original Alignment acGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATg gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagacGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATggtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca Alignment from CESAR acGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATg gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagacGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATggtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca Alignment from Spaln_aa2Genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagACGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATGgtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca Alignment from Spaln_nt2Genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagACGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATGgtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca Alignment from Pairagon ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagACGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATGgtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca Alignment from Exonerate_protein2genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagACGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATGgtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca Alignment from Exonerate_coding2genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagACGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATGgtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca Alignment from GeneWise ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG gtagtaagttggtcaggtctctagaggtcttctccctggttcattggcagACGATGACCACTGGATCATTGACACAGACTATGATACCTTGGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATGgtaaggaagtattcctggggaactctggggaacttggcagtgctgggtca #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg atgtttctagtaactgggcactcactgccttttttttttttccccttcagccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTggtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg atgtttctagtaactgggcactcactgccttttttttttttccccttcagccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTggtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG atgtttctagtaactgggcactcactgccttttttttttttccccttcagCCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCGTGTACAGGTCTGGGTCCTGCTGTGTTCACCTGCCCACTTTTTTTTGGAGTTGgtgaggctcacctgtgcagcaatgatattcccagcatgaggaccaaaaac #### Rcl1_ID6213_3 --> 2 - 0 Original Alignment gaACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatataggaACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg Alignment from CESAR gaACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatataggaACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg Alignment from Spaln_aa2Genome GAACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatatagGAACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg Alignment from Spaln_nt2Genome GAACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatatagGAACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg Alignment from Pairagon GAACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatatagGAACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg Alignment from Exonerate_protein2genome GAACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatatagGAACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg Alignment from Exonerate_coding2genome GAACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatatagGAACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg Alignment from GeneWise GAACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTGACCAATGACCAGGTTGACCCTTCG tgctgccccatcatttgttgttgttttgttctgttcccttcttgatatagGAACAACCCTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTGGCATTGGCTATTACCTGGAAGCTCTCCTTTGCCTGGCTCTGCTTATGAAACACCCATTAAAAATCGTTCTGCGAGGAGTCACCAATGACCAGGTTGACCCTTCGgtaagcaatgaggtcacaaagtcatagttctgttctcatgtatttctttg #### Rcl1_ID6215_5 --> 0 - 2 Original Alignment ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGgcgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat Alignment from CESAR ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGgcgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat Alignment from Spaln_aa2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat Alignment from Spaln_nt2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat Alignment from Pairagon ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat Alignment from Exonerate_protein2genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat Alignment from Exonerate_coding2genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat Alignment from GeneWise ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC catgttttccgtgtctgctttctccaatttcaccaccctgtttctctcagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaagttttgcattaaagtcctacttctctttttgccttgtgaagatgat #### Rcor2_ID2097_8 --> 0 - 0 Original Alignment GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat Alignment from CESAR GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat Alignment from Spaln_aa2Genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat Alignment from Spaln_nt2Genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat Alignment from Pairagon GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat Alignment from Exonerate_protein2genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat Alignment from Exonerate_coding2genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat Alignment from GeneWise GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG tactggccttcatggaatgcatgctctgttaaatctgtttttgctcccagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCGTCAAGCACTGGAGGGTGGCATTGACCCTCTCCGCCCCCCTGAGgtgagagtcttttgtttacctgggtacaaaaggaggattccctcagagat #### Rfx3_ID5875_15 --> 0 - 1 Original Alignment TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAggtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg Alignment from CESAR TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAggtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg Alignment from Spaln_aa2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAGgtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg Alignment from Spaln_nt2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAGgtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg Alignment from Pairagon TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAGgtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg Alignment from Exonerate_protein2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAGgtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg Alignment from Exonerate_coding2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAGgtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg Alignment from GeneWise TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG ttttattctgtctaggagtaactactacttgcttggttttggtttttcagTTTGGCGATTTAAATGCTGTATCTCCCGGAATTCTAGATAAAGgtaggtactgaaaattctgaagggctttttgactgagctcctgtgagagg #### Rfx3_ID5897_5 --> 0 - 2 Original Alignment CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTag tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTaggtatgtactgacagctgacataattagttctactccctgattttactggc Alignment from CESAR CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTag tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTaggtatgtactgacagctgacataattagttctactccctgattttactggc Alignment from Spaln_aa2Genome CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAG tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAGgtatgtactgacagctgacataattagttctactccctgattttactggc Alignment from Spaln_nt2Genome CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAG tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAGgtatgtactgacagctgacataattagttctactccctgattttactggc Alignment from Pairagon CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAG tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAGgtatgtactgacagctgacataattagttctactccctgattttactggc Alignment from Exonerate_protein2genome CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAG tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAGgtatgtactgacagctgacataattagttctactccctgattttactggc Alignment from Exonerate_coding2genome CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAG tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAGgtatgtactgacagctgacataattagttctactccctgattttactggc Alignment from GeneWise CTGCAATGGCTGCTGGACAATTATGAGACAGCGGAGGGAGTGAGCCTGCCGAGGAGCACGCTGTACAACCACTACCTTCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTAATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAG tgagagttgaggaaaagattccaagtaggatcatgttttgcttattttagCTGCAATGGCTGCTGGACAACTATGAGACAGCAGATGGAGTGAGCCTACCGAGGAGCACACTTTACAACCACTACCTCCGACACTGCCAGGAGCACAAGCTGGACCCGGTCAATGCCGCCTCTTTCGGAAAACTCATAAGGTCCATTTTTATGGGGCTACGAACTAGGAGATTAGGCACTAGgtatgtactgacagctgacataattagttctactccctgattttactggc #### Rin1_ID814_9 --> 2 - 0 Original Alignment gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcaggtGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGC---CCGGCCACCCACAGCTTTCAGgcaggtagccagtcctcacaaatttcccctattgaccatgctcagagcaa Alignment from CESAR gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcaggtGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGC---CCGGCCACCCACAGCTTTCAGgcaggtagccagtcctcacaaatttcccctattgaccatgctcagagcaa Alignment from Spaln_aa2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcagGTGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGC---CCGGCCACCCACAGCTTTCAGgcaggtagccagtcctcacaaatttcccctattgaccatgctcagagcaa Alignment from Spaln_nt2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcagGTGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCC---CGGCCACCCACAGCTTTCAGgcaggtagccagtcctcacaaatttcccctattgaccatgctcagagcaa Alignment from Pairagon GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcagGTGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGC---CCGGCCACCCACAGCTTTCAGgcaggtagccagtcctcacaaatttcccctattgaccatgctcagagcaa Alignment from Exonerate_protein2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcagGTGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGC---CCGGCCACCCACAGCTTTCAGgcaggtagccagtcctcacaaatttcccctattgaccatgctcagagcaa Alignment from Exonerate_coding2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcagGTGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGC---CCGGCCACCCACAGCTTTCAGgcaggtagccagtcctcacaaatttcccctattgaccatgctcagagcaa Alignment from GeneWise GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAGCATCTCCTCCGAGTAG gcagtacccataccctagcctcagctgggtcctgcatttggtgatttcagGTGGCTACTACCTGACCAGCCTCTCAGCCAGACTGGCCTTGCTGAGTGGCCTAAGCCAAGCCCGAGCACTGCCTCTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGC---CCGGCCACCCACAGCTTTCAG------------GCAGgtagccagtcctcacaaatttcccctattgacca #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagggCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagggCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from Exonerate_coding2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC gggctttgtggcctgtggcagatgccaccactgggatctttaatatatagGGCTACAGGCGGCATTTCGTGGTCGCGGCCTGCGGGGTGAGGAGGTAGCTGTGCCGCCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAGAAGGGAAAAGGGTTGATAGGGAAATTGAACTTCTCTGGGGACGCGGAGGACAAAACAGATGAGGCACAGGAGCCGTTGGAGCGGGACTTCgtaagaatagggagatggtaagttttgggtgagggcagtagctgctgtcc #### Rnls_ID6792_5 --> 2 - 0 Original Alignment agTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagagTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg Alignment from CESAR agTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagagTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg Alignment from Spaln_aa2Genome AGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagAGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg Alignment from Spaln_nt2Genome AGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagAGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg Alignment from Pairagon AGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagAGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg Alignment from Exonerate_protein2genome AGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagAGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg Alignment from Exonerate_coding2genome AGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagAGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg Alignment from GeneWise AGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCACTGTCCCATTTGGAGTTCAACACTTGGAGGCCAGTGAGGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAG cccaggtaccctgctctaacatgtgtctaagacttgtttttctcttgtagAGTCATCAGAATGTGGTCCATCCGTGGTGATCCAAACCAGTGTCCCATTTGGAGTTCAACACTTGGAGGCTAGTGAAGCGGATGTGCAGAAGTTAATGATCCAGCAATTGGAAACCATTCTGCCGGGTTTGCCTCAGCCAGTTGCTACCATATGCCATAAATGGACATATTCACAGgtgggtagaaaatgtagtggagtcctctacattgtctagtagaggaaatg #### Rnls_ID6819_2 --> 1 - 1 Original Alignment tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg caattgtagagttaattaaactatgcagtgactgaacattattcttccagtTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAggtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat Alignment from CESAR tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg caattgtagagttaattaaactatgcagtgactgaacattattcttccagtTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAggtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat Alignment from Spaln_aa2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG caattgtagagttaattaaactatgcagtgactgaacattattcttccagTTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAGgtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat Alignment from Spaln_nt2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG caattgtagagttaattaaactatgcagtgactgaacattattcttccagTTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAGgtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat Alignment from Pairagon TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG caattgtagagttaattaaactatgcagtgactgaacattattcttccagTTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAGgtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat Alignment from Exonerate_protein2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG caattgtagagttaattaaactatgcagtgactgaacattattcttccagTTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAGgtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat Alignment from Exonerate_coding2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG caattgtagagttaattaaactatgcagtgactgaacattattcttccagTTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAGgtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat Alignment from GeneWise TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG caattgtagagttaattaaactatgcagtgactgaacattattcttccagTTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGAAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAGgtaaggagtgaattttcgctctctcttaggataaaagtggtgggctaaat #### Rorb_ID4536_6 --> 0 - 1 Original Alignment TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAg catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAggtaagccttctgacttgtgaggccctctttcagagagggactatcgggct Alignment from CESAR TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAg catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAggtaagccttctgacttgtgaggccctctttcagagagggactatcgggct Alignment from Spaln_aa2Genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGgtaagccttctgacttgtgaggccctctttcagagagggactatcgggct Alignment from Spaln_nt2Genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGgtaagccttctgacttgtgaggccctctttcagagagggactatcgggct Alignment from Pairagon TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGgtaagccttctgacttgtgaggccctctttcagagagggactatcgggct Alignment from Exonerate_protein2genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGgtaagccttctgacttgtgaggccctctttcagagagggactatcgggct Alignment from Exonerate_coding2genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGgtaagccttctgacttgtgaggccctctttcagagagggactatcgggct Alignment from GeneWise TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG catctctttggaaagtggtcaattcaagcactcgtgccttgctccaccagTCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGgtaagccttctgacttgtgaggccctctttcagagagggactatcgggct #### Rorb_ID4537_5 --> 2 - 0 Original Alignment atCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagatCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct Alignment from CESAR atCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagatCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct Alignment from Spaln_aa2Genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct Alignment from Spaln_nt2Genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct Alignment from Pairagon ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct Alignment from Exonerate_protein2genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct Alignment from Exonerate_coding2genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct Alignment from GeneWise ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG tcttctagaaaaatatttaaaccacaaagttcctttctaaaaattttaagATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTCGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTACCAAAGCAAGgtaggacaagaaccatgggaaacaggtcacctttaatgttacccatttct #### Rpp30_ID7083_5 --> 0 - 0 Original Alignment AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa Alignment from CESAR AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa Alignment from Spaln_aa2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa Alignment from Spaln_nt2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa Alignment from Pairagon AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa Alignment from Exonerate_protein2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa Alignment from Exonerate_coding2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa Alignment from GeneWise AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aagccttacattctttgttactggatgatataccctccctctattcctagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAAGCTTTTCCATgtgagcgacaggtgaaacagagcaacatttaagatatcagtagggagaaa #### Rpp30_ID7084_6 --> 0 - 0 Original Alignment GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag Alignment from CESAR GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag Alignment from Spaln_aa2Genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag Alignment from Spaln_nt2Genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag Alignment from Pairagon GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag Alignment from Exonerate_protein2genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag Alignment from Exonerate_coding2genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag Alignment from GeneWise GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG caatccagtaagtggtactttactgttagttctttcctttttgtgaacagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTGgtatacattattctttgttgcttagggaactggaacctgggtaattggag #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca Alignment from Exonerate_protein2genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca Alignment from Exonerate_coding2genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca Alignment from GeneWise AATGTAATTCTGTCCAGTGCTGCAGAAAGG tatgttattgatcatctaagatttatatatcatgtcttgtaattgtgcagAATGTAATTCTGTCCAGTACTGCAGAAAGGgtcagtatagctggaatactatgtcccagcagttacagagcttgactaca #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCaggtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCaggtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggagatgccaacatcacttcacttaattgttctctcctagGGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAGgtgggtggcagggcaggtatgtgtctggggcagggttcccgagcatggac #### Rps6kb2_ID380_2 --> 0 - 2 Original Alignment GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGga aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGgagtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc Alignment from CESAR GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGga aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGgagtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc Alignment from Spaln_aa2Genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGGAgtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc Alignment from Spaln_nt2Genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGGAgtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc Alignment from Pairagon GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGGAgtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc Alignment from Exonerate_protein2genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGGAgtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc Alignment from Exonerate_coding2genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGGAgtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc Alignment from GeneWise GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA aggaggtatactgggacctctcatggtctttaacttgcttatgtttgaagGATGTGTGTCCCCTTGGTGAATTAAGGGCTGCTGGCCTGGAgtgagcgagggtctggcttagggggtgagggtatgcagtaggttagggcc #### Rrp12_ID8291_32 --> 2 - 0 Original Alignment ctGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagctGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc Alignment from CESAR ctGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagctGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc Alignment from Spaln_aa2Genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagCTGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc Alignment from Spaln_nt2Genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagCTGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc Alignment from Pairagon CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagCTGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc Alignment from Exonerate_protein2genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagCTGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc Alignment from Exonerate_coding2genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagCTGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc Alignment from GeneWise CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG gggaccctccctggctgtgcctgactcaattgtgtcgcttttccttctagCTGGAGGGTCTGGCATCCATCGCCCTGTGGCCAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCAAGgtatgggctgcaggcagggagatcatgaaaggcaagaagggtccgtgtcc #### Rrp12_ID8297_26 --> 0 - 2 Original Alignment ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgggtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg Alignment from CESAR ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgggtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg Alignment from Spaln_aa2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGGgtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg Alignment from Spaln_nt2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGGgtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg Alignment from Pairagon ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGGgtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg Alignment from Exonerate_protein2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGGgtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg Alignment from Exonerate_coding2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGGgtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg Alignment from GeneWise ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG gggcagaaggccccaagctcactctgacaatcttttatcttttaatgcagATGGAAGCCATTGGGAAGCTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGGgtgagtgcttgaatggggtagggttggaggatgggaccctgggtctcttg #### Rrp12_ID8299_24 --> 2 - 1 Original Alignment acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagacGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg Alignment from CESAR acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagacGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg Alignment from Spaln_aa2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagACGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg Alignment from Spaln_nt2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagACGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg Alignment from Pairagon ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagACGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg Alignment from Exonerate_protein2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagACGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg Alignment from Exonerate_coding2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagACGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg Alignment from GeneWise ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgtgcagcctgtcttcgagtaatttgttttggtttttgctgcagACGCTCTGCAACGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCGGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgagttggatggatcgctcttggcaaatcaaggatatttagctgaaggg #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagaTTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagaTTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagccctgagtagggacagctctgtccaaattttatttttctctttaagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGTTATACTCTACCATCCGGCCCTACCTTGAGgtaagttctccttgtctccatccatgctatgcccagatctcaccctggtt #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagagGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagagGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG agttactattagctctttcccaacaatgacacacgtatcgaatcttttagAGGCAGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAACCTGTTGCAGCTGGAGAGACGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCCCAGgtaagagctgggccttggaagggtcaacattccacctccaggcactggag #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagcaATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag Alignment from CESAR caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagcaATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagCAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagCAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagCAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagCAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag Alignment from Exonerate_coding2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagCAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag Alignment from GeneWise CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gccgacaggccaacaggatatctacagccacagaaccctccttcttccagCAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATCTATGATACACTCCAGTGGCAGgtcagtgtcagctggggagggacaagggaaggagcatgcagggttacaag #### Rrp12_ID8309_14 --> 0 - 2 Original Alignment TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTga attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTgagtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga Alignment from CESAR TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTga attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTgagtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga Alignment from Spaln_aa2Genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTGAgtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga Alignment from Spaln_nt2Genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTGAgtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga Alignment from Pairagon TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTGAgtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga Alignment from Exonerate_protein2genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTGAgtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga Alignment from Exonerate_coding2genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTGAgtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga Alignment from GeneWise TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcacatcttgtcctcactttgttccctcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCTTTGGAAATCGATGGCTCTGAgtgagggtgaccctgcttggattctgcatgcaacttgctcggttcccaga #### Rrp12_ID8314_9 --> 0 - 0 Original Alignment CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc Alignment from CESAR CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc Alignment from Spaln_aa2Genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc Alignment from Spaln_nt2Genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc Alignment from Pairagon CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc Alignment from Exonerate_protein2genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc Alignment from Exonerate_coding2genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc Alignment from GeneWise CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtgtctccttgcgtccttgtcctttctgcctcagCTTGTAACAGCCTGTGCCATGCAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCTAGCACCTTGTCAGCAGAACTCAATGCCCAGATTGTCACAgtgagtccagatgttgcgggagggtaggcttcatcactagggtagggtgc #### Rrp12_ID8316_7 --> 0 - 1 Original Alignment ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAggtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta Alignment from CESAR ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAggtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta Alignment from Spaln_aa2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta Alignment from Spaln_nt2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta Alignment from Pairagon ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta Alignment from Exonerate_protein2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta Alignment from Exonerate_coding2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta Alignment from GeneWise ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG gagccaagtcttcgaagacacatcctcttttctttgatgttttgtcttagATCCGTAAGGCTGCTCAGCATGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCGGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtgaggcagctaagttcaagggcaggtggagtggaagtgggagtagtcta #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAggtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAggtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagagGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGgggtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagagGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGgggtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG ccccaccagccatgggcaagcatagcctacacaatttctttctcctttagAGGCGGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAGCTGGGgtgagcgtttcttagccaagggcggggcttgcttcccaattcttgggtag #### Scd2_ID8988_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGaggtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGaggtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGAGgtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGAGgtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGAGgtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGAGgtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGAGgtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttggagggcctcccttcgcaatactgggagagcattccgctctttttcagAATGACGTATATGAGTGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTTCTCTCATGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCTGAGAAGCTGGTGATGTTCCAGAGGAGgtaagatctgggggctgaggctgaggctatgctccccacccaccaggaat #### Scd2_ID8989_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg gtgagagagttttctctccatgaagccttctggatattggtgttttacaggTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGggtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg gtgagagagttttctctccatgaagccttctggatattggtgttttacaggTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGggtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG gtgagagagttttctctccatgaagccttctggatattggtgttttacagGTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGGgtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG gtgagagagttttctctccatgaagccttctggatattggtgttttacagGTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGGgtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG gtgagagagttttctctccatgaagccttctggatattggtgttttacagGTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGGgtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG gtgagagagttttctctccatgaagccttctggatattggtgttttacagGTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGGgtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG gtgagagagttttctctccatgaagccttctggatattggtgttttacagGTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGGgtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG gtgagagagttttctctccatgaagccttctggatattggtgttttacagGTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGCATTAGCACCTTCTTGCGATATGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCCCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGGgtactttcccgcagcaggaccgcatcaggtgactggcttcttagagattc #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcaggaCCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcaggaCCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac #### Sec31b_ID9033_19 --> 0 - 1 Original Alignment GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTg gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTggtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac Alignment from CESAR GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTg gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTggtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac Alignment from Spaln_aa2Genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac Alignment from Spaln_nt2Genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac Alignment from Pairagon GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac Alignment from Exonerate_protein2genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac Alignment from Exonerate_coding2genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac Alignment from GeneWise GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG gcaattgccaagcataccagccagctcctaacacagtttttctcttccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCGGTGATGCCCTTCAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtttgtaaaggaagatctcttctggtggaatataaggtctcagggaagac #### Sec31b_ID9036_16 --> 2 - 0 Original Alignment acATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagacATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag Alignment from CESAR acATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagacATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag Alignment from Spaln_aa2Genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag Alignment from Spaln_nt2Genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag Alignment from Pairagon ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag Alignment from Exonerate_protein2genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag Alignment from Exonerate_coding2genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag Alignment from GeneWise ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG gagtagcatagggaagcaatgatggtagacaagctttggtctctttctagACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCAAGCCCCATGGCTCTGCAGgtaagcctcctctccagagttctggccactggtacggttgttcagatgag #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac #### Sec31b_ID9046_6 --> 0 - 2 Original Alignment ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCag taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCcggtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac Alignment from CESAR ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCag taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCcggtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac Alignment from Spaln_aa2Genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCCGgtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac Alignment from Spaln_nt2Genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCCGgtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac Alignment from Pairagon ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCCGgtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac Alignment from Exonerate_protein2genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCCGgtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac Alignment from Exonerate_coding2genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCCGgtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac Alignment from GeneWise ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG taatctgagaggttcgacacattaccgaggtacatcattttctgtttcagATGAACTGCTCAGGCCTGGCTTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGATGACCAACTCCCTGTGATTCAGTTGTGGGATCTGCGCTTTGCTTCATCACCCTTGAAGGTTCTGGAGAGCCACAGCCGgtgaggtctccaaccctgttcacacatgtgggcctcatttggccgtggac #### Sec31b_ID9050_2 --> 2 - 2 Original Alignment gaACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCag tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacaggaACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCaggtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata Alignment from CESAR gaACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCag tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacaggaACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCaggtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata Alignment from Spaln_aa2Genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacagGAACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAGgtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata Alignment from Spaln_nt2Genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacagGAACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCTC---ACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAGgtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata Alignment from Pairagon GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacagGAACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCTC---ACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAGgtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata Alignment from Exonerate_protein2genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacagGAACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAGgtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata Alignment from Exonerate_coding2genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacagGAACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAGgtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata Alignment from GeneWise GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG tgtgcattgctgctcatttgctgcctctttcagaattcttttctttacagGAACATCTGCTCAGCATCAAGATGCCTCCTTCAGCACAAACGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAGgtaaggcattaggtctatgtgtgggttgtcaggtcaggtcctgatggata #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagagCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagagCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtaggAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtaggAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG ataggcctggggcaggctccattcaatctagtttttctttttctttgtagGAAGACACTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGAGTGCCTCAACCCCGACCTGGCTCGgtatggactcaggcctggactctacattaagtggacaaagcgcaggggtg #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAggtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAggtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggccaacagcgtctgcagagccttggaattgatactgaatttcagTGTATTACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTGGGCACAGgtgagtctgactccaatcctgatccttaaatggccttggttactgatctt #### Sema4g_ID9255_13 --> 1 - 1 Original Alignment gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcaggACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAggtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta Alignment from CESAR gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcaggACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAggtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta Alignment from Spaln_aa2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcagGACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAGgtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta Alignment from Spaln_nt2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcagGACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAGgtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta Alignment from Pairagon GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcagGACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAGgtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta Alignment from Exonerate_protein2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcagGACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAGgtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta Alignment from Exonerate_coding2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcagGACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAGgtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta Alignment from GeneWise GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gcctgatgcccatttcccagtgttcgctgcaacttttttcctcttggcagGACAGAATTGATACAGGACATTGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAGgtgtgtggaactcatgggcttgggtcgatgtttctgacttggtgtgctta #### Sf1_ID1663_4 --> 1 - 2 Original Alignment gTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaa ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcaggTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaagtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc Alignment from CESAR gTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaa ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcaggTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaagtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc Alignment from Spaln_aa2Genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcagGTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAAgtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc Alignment from Spaln_nt2Genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcagGTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAAgtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc Alignment from Pairagon GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcagGTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAAgtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc Alignment from Exonerate_protein2genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcagGTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAAgtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc Alignment from Exonerate_coding2genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcagGTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAAgtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc Alignment from GeneWise GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA ggagagtgggggtcagagtcagagcggtactgtattcttcctgttggcagGTCTCCTTCTCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGCGAGTTCCGTACCCACAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAAgtaagtagagaactcattaaaagggcatcctgtgttcatatgtgacctgc #### Sf1_ID1671_12 --> 2 - 1 Original Alignment gtATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAa cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacaggtATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAagtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga Alignment from CESAR gtATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAa cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacaggtATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAagtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga Alignment from Spaln_aa2Genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacagGTATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAAgtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga Alignment from Spaln_nt2Genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacagGTATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAAgtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga Alignment from Pairagon GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacagGTATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAAgtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga Alignment from Exonerate_protein2genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacagGTATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAAgtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga Alignment from Exonerate_coding2genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacagGTATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAAgtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga Alignment from GeneWise GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA cccaggaccctgctgtctaaagcccaggacacctcacacttaatccacagGTATGATGCCACCGCCACCTATGGGTACGATGCCGCCACCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCATCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCACCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAAgtatgtggaacattttgggctcgtgggggtgggcagggtgtgggttaaga #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGGTGGCTGAGCATGCTGCTAAGCAGAAG tggggcccatatctctgagagtctggagggtgtgctcttgcccgtcacagGTTATGAGCCGGAAGGGCGCGGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCACCTGAGGAATTGGAGTTGGACCCTATGGCCATGATGCAGAAGTACGAGGAGCATGTTCGGGAACAGCAGGCACAAGTAGAGAAGGAAGACTTCAGTGATATGGTGGCTGAGCATGCTGCTAAGCAGAAGgtaagggcaattggtgggcctagaaggagggctatcctttctggtggagg #### Sf3b2_ID902_16 --> 0 - 0 Original Alignment AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc Alignment from CESAR AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc Alignment from Spaln_aa2Genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc Alignment from Spaln_nt2Genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc Alignment from Pairagon AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc Alignment from Exonerate_protein2genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc Alignment from Exonerate_coding2genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc Alignment from GeneWise AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG atctttagtgtagtttttttcttgggcttccatctatccatccattccagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAGACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagagtagactatttagtctgaatttactccatgctagacaggtcagc #### Sf3b2_ID903_15 --> 0 - 0 Original Alignment AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt Alignment from CESAR AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt Alignment from Spaln_aa2Genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt Alignment from Spaln_nt2Genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt Alignment from Pairagon AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt Alignment from Exonerate_protein2genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt Alignment from Exonerate_coding2genome AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt Alignment from GeneWise AATGCCCACAAAGTCCCTCCTCCGTGGCTGATTGCCATGCAGCGATACGGGCCACCCCCATCCTACCCAAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAG tgagaagggtaggggaaggtgggtaaccgttttatttatttaccttctagAATGCCCACAAAGTCCCCCCTCCGTGGCTGATTGCCATGCAGCGATATGGGCCACCCCCATCCTACCCGAACCTGAAAATCCCTGGACTGAATTCACCTATCCCTGAGgtgagtagtgagcctatttgccttcctggctgcctcttttcttttttttt #### Sf3b2_ID906_12 --> 0 - 0 Original Alignment CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg Alignment from CESAR CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg Alignment from Spaln_aa2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg Alignment from Spaln_nt2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg Alignment from Pairagon CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg Alignment from Exonerate_protein2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg Alignment from Exonerate_coding2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg Alignment from GeneWise CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG cacggggaagtcattatcatttctactatttgtctggccatctatttcagCTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaaccccttgtagtagcttgcctcagaagtg #### Sf3b2_ID908_10 --> 0 - 0 Original Alignment CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg Alignment from CESAR CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg Alignment from Spaln_aa2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg Alignment from Spaln_nt2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg Alignment from Pairagon CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg Alignment from Exonerate_protein2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg Alignment from Exonerate_coding2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg Alignment from GeneWise CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG gagtcagaaaaggcggtgtgctgagatgtactgaaccttttgttgttaagCTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGGGCTTTGAGGAGGAGCACAAAGACAGTGACGATGACAGCAGTGATGATGAGCAGgtactaacccctatgtgggagagagatgcagggcccagggaggtggagtg #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG aggtgtgggatgcggatcctctgacttagaccccttgagcttgggtctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGGACTCCGGTCGGTCCCGAGGCTCGGACCCCCCTGCAGCT---GTAGAGATTGAGTATGTGAGCGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGgtaggtagggtggtgtgctctgaggacctaccttgctgagggggacaggg #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagggAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagggAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Exonerate_coding2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from GeneWise TCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagggagTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga #### Sfr1_ID10329_3 --> 0 - 0 Original Alignment CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag Alignment from CESAR CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag Alignment from Spaln_aa2Genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag Alignment from Spaln_nt2Genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag Alignment from Pairagon CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag Alignment from Exonerate_protein2genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag Alignment from Exonerate_coding2genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag Alignment from GeneWise CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG ttactacaagactgtatccttaacattcctgaagtgtcctgttcctgcagCCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAACGATGAAAATAATGAAACCCTTTCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGTTCAAAGACCCAAGAAAGCTTGAAAAACAAGGATAGTGAGCCTGGAGAAAAGAGCTCAGAAGAGAAAAACACTTGTGAGTCTAAATCGTCGGATACGGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAACGCAATCATTAGAGAAAAATTAAAACAAGAAAAAGTAAGATTGATTAGACAGGTTGAAGAGAAAGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATTAAGgtaagaagtattttagaatcaatacatcatttctacataaactgcggtag #### Sfrp5_ID8434_2 --> 2 - 1 Original Alignment tgACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTg tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagtgACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTggtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga Alignment from CESAR tgACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTg tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagtgACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTggtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga Alignment from Spaln_aa2Genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagTGACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTGgtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga Alignment from Spaln_nt2Genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagTGACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTGgtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga Alignment from Pairagon TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagTGACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTGgtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga Alignment from Exonerate_protein2genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagTGACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTGgtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga Alignment from Exonerate_coding2genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagTGACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTGgtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga Alignment from GeneWise TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG tgtaccgtcctgctttataagaccacaattgtgcttattctttttaaaagTGACCAGGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGATTTTGgtatgcgtggaatcactggatcctgacagttcccagcagcctggcttaga #### Sfxn2_ID9965_3 --> 1 - 2 Original Alignment gACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCag tggtcccaccccagagcccctctttatcgactgcttcatcttacctccaggACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCaggtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat Alignment from CESAR gACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCag tggtcccaccccagagcccctctttatcgactgcttcatcttacctccaggACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCaggtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat Alignment from Spaln_aa2Genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tggtcccaccccagagcccctctttatcgactgcttcatcttacctccagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCAGgtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat Alignment from Spaln_nt2Genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tggtcccaccccagagcccctctttatcgactgcttcatcttacctccagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCAGgtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat Alignment from Pairagon GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tggtcccaccccagagcccctctttatcgactgcttcatcttacctccagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCAGgtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat Alignment from Exonerate_protein2genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tggtcccaccccagagcccctctttatcgactgcttcatcttacctccagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCAGgtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat Alignment from Exonerate_coding2genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tggtcccaccccagagcccctctttatcgactgcttcatcttacctccagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCAGgtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat Alignment from GeneWise GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tggtcccaccccagagcccctctttatcgactgcttcatcttacctccagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAATCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACATCTGTCAGgtgagtgagctgctattctctgactctctgagcaaccctgctgctcacat #### Sfxn2_ID9968_6 --> 1 - 0 Original Alignment gGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttaggGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc Alignment from CESAR gGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttaggGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc Alignment from Spaln_aa2Genome GGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttagGGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc Alignment from Spaln_nt2Genome GGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttagGGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc Alignment from Pairagon GGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttagGGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc Alignment from Exonerate_protein2genome GGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttagGGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc Alignment from Exonerate_coding2genome GGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttagGGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc Alignment from GeneWise GGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAG gcaggttccttacatctacttcctaacactaacagttggtgtctgcttagGGAACTCATTCAGGGTATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGgtgagtagtgtagaaattttctcctaagaccccatcccttgttgccggcc #### Sfxn2_ID9970_8 --> 2 - 0 Original Alignment tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagtcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from CESAR tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagtcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Spaln_aa2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Spaln_nt2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Pairagon TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Exonerate_protein2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from Exonerate_coding2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat Alignment from GeneWise TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG ttggctgagatttgtctgcagcagtgggttctctctctcttcttatttagTCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAGgtgggacattctccctgttattcccccacactcccaccgcatgccgacat #### Sfxn2_ID9972_10 --> 1 - 2 Original Alignment cCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAAtg gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagcCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAAtggtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct Alignment from CESAR cCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAAtg gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagcCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAAtggtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct Alignment from Spaln_aa2Genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagCCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAATGgtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct Alignment from Spaln_nt2Genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagCCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAATGgtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct Alignment from Pairagon CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagCCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAATGgtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct Alignment from Exonerate_protein2genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagCCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAATGgtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct Alignment from Exonerate_coding2genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagCCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAATGgtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct Alignment from GeneWise CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gtggccagttctctggaatgtgtccctaacttttgctgaacactctgcagCCTCCTCTTTATGGTGCCAGTGGCATGCGGACTCTTCCCTCAGGAATGgtgtgtgccatttgtcacctgccgcacttgatagttatatcaaacaccct #### Sfxn3_ID9290_8 --> 0 - 2 Original Alignment CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCtggtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt Alignment from CESAR CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCtggtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt Alignment from Spaln_aa2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCTGgtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt Alignment from Spaln_nt2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCTGgtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt Alignment from Pairagon CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCTGgtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt Alignment from Exonerate_protein2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCTGgtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt Alignment from Exonerate_coding2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCTGgtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt Alignment from GeneWise CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG ccatggtgtagaaaggtagacggaatgatgtccgaatgacttctcttcagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTAGGTTTCTGgtgagtttgtaaagggtagtaggggcatatggaaaagccaatatcatttt #### Sfxn4_ID13347_11 --> 2 - 0 Original Alignment ccCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagccCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag Alignment from CESAR ccCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagccCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag Alignment from Spaln_aa2Genome CCCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagCCCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag Alignment from Spaln_nt2Genome CCCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagCCCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag Alignment from Pairagon CCCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagCCCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag Alignment from Exonerate_protein2genome CCCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagCCCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag Alignment from Exonerate_coding2genome CCCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagCCCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag Alignment from GeneWise CCCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAG tcccttgctgtaattaactcaaactcctacagagatctttgtcgtcccagCCCAAGTCAGCGGAATGAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGGCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGgtaagtagttttgtgtttgagattttttttttcttttttttttaagatag #### Sfxn4_ID13350_8 --> 0 - 0 Original Alignment GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta Alignment from CESAR GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta Alignment from Spaln_aa2Genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta Alignment from Spaln_nt2Genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta Alignment from Pairagon GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta Alignment from Exonerate_protein2genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta Alignment from Exonerate_coding2genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta Alignment from GeneWise GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTAT ctcttatgcttgaaatcagaaagtgatctacagtgttattttattaccagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACCAATGAAAATGCCAGTTATgtaagcattttgaacccttagaagataggatttgcatcattaaaaaatta #### Sfxn4_ID13351_7 --> 0 - 0 Original Alignment GTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagcaacaaggcaattattgttcgcagGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat Alignment from CESAR GTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagcaacaaggcaattattgttcgcagGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat Alignment from Spaln_aa2Genome GTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagcaacaaggcaattattgttcgcagGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat Alignment from Spaln_nt2Genome GTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagcaacaaggcaattattgttcgcagGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat Alignment from Pairagon GTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagcaacaaggcaattattgttcgcagGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat Alignment from Exonerate_protein2genome GTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagcaacaaggcaattattgttcgcagGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat Alignment from Exonerate_coding2genome GTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagcaacaaggcaattattgttcgcagGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat Alignment from GeneWise ------CCTGTGACAGCACCCATGGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAG ctgcctgtgcaccagagatgcataagCAACAAGGCAATTATTGTTCGCAGGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACACAGgtgggttatgtactagtactttgaattttataatttagggattctcttat #### Sfxn4_ID13352_6 --> 2 - 0 Original Alignment ctTTCCTGCCTGTGACAGCACCCATG aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagccTTCCTGCCTGTGACAGCACCCATGgtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga Alignment from CESAR ctTTCCTGCCTGTGACAGCACCCATG aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagccTTCCTGCCTGTGACAGCACCCATGgtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga Alignment from Spaln_aa2Genome CTTTCCTGCCTGTGACAGCACCCATG aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagCCTTCCTGCCTGTGACAGCACCCATGgtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga Alignment from Spaln_nt2Genome CTTTCCTGCCTGTGACAGCACCCATG aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagCCTTCCTGCCTGTGACAGCACCCATGgtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga Alignment from Pairagon CTTTCCTGCCTGTGACAGCACCCATG aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagCCTTCCTGCCTGTGACAGCACCCATGgtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga Alignment from Exonerate_protein2genome CTTTCCTGCCTGTGACAGCACCCATG aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagCCTTCCTGCCTGTGACAGCACCCATGgtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga Alignment from Exonerate_coding2genome CTTTCCTGCCTGTGACAGCACCCATG aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagCCTTCCTGCCTGTGACAGCACCCATGgtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga Alignment from GeneWise aggacctgtctgcctaggtaacatggtcctttatgctgccttatttttagccttcctgcctgtgacagcacccatggtaagcttgtgactgcgtgtgtatcactccagctttggatccccaataga #### Sgms1_ID6686_3 --> 0 - 1 Original Alignment CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGt actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGtgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca Alignment from CESAR CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGt actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGtgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca Alignment from Spaln_aa2Genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGTgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca Alignment from Spaln_nt2Genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGTgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca Alignment from Pairagon CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGTgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca Alignment from Exonerate_protein2genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGTgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca Alignment from Exonerate_coding2genome CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGTgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca Alignment from GeneWise CTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCCATCACAGGCTCGCACAACATGTGTGGCGACTATCTGTACAGTGGCCACACGGTCATGCTAACGCTCACCTACCTATTTATCAAAGAGT actgggcaaggtgaactaatgatgattctccattgtcctccctccaacagCTCTTTGGAGACTGGGAAGCTCAAGTGCGGAGAATAATGAAGCTCATTGCTGGAGGTGGCTTATCTGTCACAGGCTCACACAACATGTGTGGCGACTATCTGTACAGTGGCCACACAGTCATGCTAACACTCACCTACCTATTTATCAAAGAGTgtaagtctaaagtgaccttgctttgtaattgtctcaccttctatgcccca #### Sh3pxd2a_ID10170_12 --> 1 - 1 Original Alignment gTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCa gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtaggTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCagtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc Alignment from CESAR gTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCa gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtaggTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCagtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc Alignment from Spaln_aa2Genome GTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCA gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtagGTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCAgtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc Alignment from Spaln_nt2Genome GTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCA gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtagGTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCAgtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc Alignment from Pairagon GTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCA gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtagGTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCAgtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc Alignment from Exonerate_protein2genome GTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCA gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtagGTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCAgtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc Alignment from Exonerate_coding2genome GTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCA gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtagGTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCAgtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc Alignment from GeneWise GTACCTCGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATTATGGAGATCAGCAACCTTCTCAACAAGAAGGCATCTGGGGATAAGGAGGCTCCGGCTGAAGGCGAGGGATCCGAGGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCGCCTTGGCCATTCCCGAGAGGACCACATCCAAGCTAGCCCAGGGCTCCCCAGCTGTGGCCAGGATCGCCCCTCAGAGGGCCCAGATCA gtccaaaccagcaatgagagccttaatgcaaagtaatgtgggctttgtagGTACCTTGGCAAAGAGGGTTGGGCACCAGCGTCCTACCTGAAGAAGGCCAAGGATGACCTGCCGACCCGGAAGAAGAACCTGGCGGGTCCGGTGGAGATCATAGGGAACATCATGGAGATTAGCAACCTTCTTAACAAGAAGGCATCTGGGGATAAGGAGGCTCCAGCTGAAGGTGAGGGATCCGAAGCCCCCATCACCAAGAAAGAGATCAGCTTACCGATCCTCTGCAACGCCTCCAATGGCAGCACCTTGGCCATTCCCAAGAGGACCACATCCAAGCTAGCCCAGGGCTTCCCAGCTGTGGCCAGGATCGCTCCTCAGCGGGCCCAGATCAgtaggtacttgaaggccccctgtttctcccaaagaggacagaatgttctc #### Sh3pxd2a_ID10173_11 --> 2 - 2 Original Alignment aaGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCag aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagaaGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCaggtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct Alignment from CESAR aaGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCag aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagaaGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCaggtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct Alignment from Spaln_aa2Genome AAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCAG aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagAAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCAGgtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct Alignment from Spaln_nt2Genome AAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCAG aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagAAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCAGgtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct Alignment from Pairagon AAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCAG aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagAAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCAGgtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct Alignment from Exonerate_protein2genome AAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCAG aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagAAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCAGgtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct Alignment from Exonerate_coding2genome AAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCAG aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagAAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCAGgtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct Alignment from GeneWise AAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATCGGCTTCGAGAAGGGTGTCACCGTGGAGGTGATTCGAAAGAACCTGGAAGGCTGGTGGTACATCAG aggtgaactgagattaacggtgctttcttgacttcccttgtggtttacagAAGAGAAGTATGTCACTGTGCAGCCCTACACCAGCCAGAGCAAAGACGAGATTGGCTTCGAAAAAGGTGTTACTGTGGAGGTGATACGAAAGAACCTGGAAGGCTGGTGGTACACCAGgtgtgtgtctggttacggagcaagagttcaaacaactgcatgtcagctct #### Sh3pxd2a_ID10209_2 --> 0 - 0 Original Alignment GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca Alignment from CESAR GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca Alignment from Spaln_aa2Genome GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca Alignment from Spaln_nt2Genome GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca Alignment from Pairagon GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca Alignment from Exonerate_protein2genome GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca Alignment from Exonerate_coding2genome GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca Alignment from GeneWise GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccactcagtcttggtcacctactcctctttgctatgttcttttcagGTATACATTATCAACGTGGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAGgtagggtagcaagagccagctggcagcttgaatctcccatgggttcctca #### Shoc2_ID11415_2 --> 2 - 1 Original Alignment gtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAg attagctaatatattctttaatgcctacagcatgtctttccttcctgtaggtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAggtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa Alignment from CESAR gtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAg attagctaatatattctttaatgcctacagcatgtctttccttcctgtaggtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAggtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa Alignment from Spaln_aa2Genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG attagctaatatattctttaatgcctacagcatgtctttccttcctgtagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa Alignment from Spaln_nt2Genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG attagctaatatattctttaatgcctacagcatgtctttccttcctgtagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa Alignment from Pairagon GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG attagctaatatattctttaatgcctacagcatgtctttccttcctgtagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa Alignment from Exonerate_protein2genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG attagctaatatattctttaatgcctacagcatgtctttccttcctgtagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa Alignment from Exonerate_coding2genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG attagctaatatattctttaatgcctacagcatgtctttccttcctgtagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa Alignment from GeneWise GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG attagctaatatattctttaatgcctacagcatgtctttccttcctgtagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaacaaatatgtcttctgttaccaattagggaaa #### Shoc2_ID11417_3 --> 2 - 0 Original Alignment gaAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccaggaAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc Alignment from CESAR gaAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccaggaAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc Alignment from Spaln_aa2Genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccagGAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc Alignment from Spaln_nt2Genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccagGAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc Alignment from Pairagon GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccagGAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc Alignment from Exonerate_protein2genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccagGAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc Alignment from Exonerate_coding2genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccagGAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc Alignment from GeneWise GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG gggctcatcagattttttggacattaaactctctctactccacccaccagGAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAGgtaattagtccgtagcgtaaaggaagcaagtataattgaaactagtttgc #### Shoc2_ID11419_5 --> 0 - 0 Original Alignment GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa Alignment from CESAR GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa Alignment from Spaln_aa2Genome GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa Alignment from Spaln_nt2Genome GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa Alignment from Pairagon GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa Alignment from Exonerate_protein2genome GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa Alignment from Exonerate_coding2genome GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa Alignment from GeneWise GACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAG ggtgtgtttgtgtctatcagtccacctgaatactgcccgtctctctgcagGACAATCAGTTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTAGAATTGAATTTAGCGACTAATCAGCTCACAAAGATCCCAGAGGATGTGTCTGGTCTCGTTTCCCTTGAGgtgcgtgtagagtataagcctttaaatcccgagataggagagagaaaaaa #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtactaagaaacaacct Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctttttccttttttg Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtactaagaaacaacct Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtactaagaaacaacct Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtactaagaaacaacct Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtactaagaaacaacct Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtactaagaaacaacct Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGGTGAGTTGCAGAGGTGACATTGGATGCTACACCGTACTAAGAAACAACCT #### Slc16a12_ID6973_5 --> 1 - 1 Original Alignment gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcaggTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAggtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa Alignment from CESAR gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcaggTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAggtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa Alignment from Spaln_aa2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcagGTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAGgtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa Alignment from Spaln_nt2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcagGTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAGgtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa Alignment from Pairagon GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcagGTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAGgtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa Alignment from Exonerate_protein2genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcagGTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAGgtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa Alignment from Exonerate_coding2genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcagGTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAGgtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa Alignment from GeneWise GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG tgggatacccacgttccaataaaagaaattatctgaaccttcttttgcagGTGTCTGAAAAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGACGGGTTATGCTATCTGTGTCTTCCAATGCTTCAATCCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAGgtgagtcttgaaagtctaatagccactgtcactgtactgatgtagaggaa #### Slc18a2_ID12935_3 --> 1 - 1 Original Alignment aATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTa ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagaATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTagtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt Alignment from CESAR aATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTa ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagaATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTagtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt Alignment from Spaln_aa2Genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagAATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTAgtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt Alignment from Spaln_nt2Genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagAATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTAgtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt Alignment from Pairagon AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagAATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTAgtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt Alignment from Exonerate_protein2genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagAATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTAgtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt Alignment from Exonerate_coding2genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagAATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTAgtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt Alignment from GeneWise AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA ttacaaaactgagtccatcaccagactcgcttccttgttgtgttggatagAATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACGGTTAgtaatcttcgatatttgtcctctgcatgcaggtctcagtaggagccctgt #### Slc18a2_ID12938_6 --> 2 - 1 Original Alignment tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagtgGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAggtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from CESAR tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagtgGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAggtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Spaln_aa2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Spaln_nt2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Pairagon TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Exonerate_protein2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from Exonerate_coding2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt Alignment from GeneWise TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaaccatcttccaaagttgtcttatgtttattctgttttctgcagTGGGACCCCCATTTGGCAGCGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCATTGGTGCTCTTGGATGGAGgtacgcgaccatggccgtgacctatgtaagggcacatgtaccagccactt #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAgtgagtagctgggagtgggaggtgagggcccaagaccgacccaggcaagt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAgtgagtagctgggagtgggaggtgagggcccaagaccgacccaggcaagt Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagCTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAgtgagtagctgggagtgggaggtgagggcccaagaccgacccaggcaagt Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagCTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAgtgagtagctgggagtgggaggtgagggcccaagaccgacccaggcaagt Alignment from Pairagon CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagCTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAgtgagtagctgggagtgggaggtgagggcccaagaccgacccaggcaagt Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagCTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAgtgagtagctgggagtgggaggtgagggcccaagaccgacccaggcaagt Alignment from Exonerate_coding2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagCTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAgtgagtagctgggagtgggaggtgagggcccaagaccgacccaggcaagt Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA-------------------------------------------------- ccagccacttctgctttccaagaagggcattaacaaggacaccttttcagCTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTACTGCCAGAAGTGAGTAGCTGGGAGTGGGAGGTGAGGGCCCAAGACCGACCCAGGCAAGT #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAggtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAggtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Pairagon AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from GeneWise AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga #### Slc18a2_ID12941_9 --> 2 - 1 Original Alignment gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttaggcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGggtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc Alignment from CESAR gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttaggcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGggtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc Alignment from Spaln_aa2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttagGCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc Alignment from Spaln_nt2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttagGCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc Alignment from Pairagon GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttagGCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc Alignment from Exonerate_protein2genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttagGCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc Alignment from Exonerate_coding2genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttagGCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc Alignment from GeneWise GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcagtatgaaggtcccggcacacacagcccctcaatcctgcttagGCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtgaggactcgggtgggtcccatctattcacctgccctgcaagaccaccc #### Slc18a2_ID12947_14 --> 2 - 0 Original Alignment gtCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaaggtCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat Alignment from CESAR gtCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaaggtCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat Alignment from Spaln_aa2Genome GTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaagGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat Alignment from Spaln_nt2Genome GTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaagGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat Alignment from Pairagon GTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaagGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat Alignment from Exonerate_protein2genome GTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaagGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat Alignment from Exonerate_coding2genome GTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaagGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat Alignment from GeneWise --CCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATG ctggtagtaagatgtttggagaaagggccatgttcttttacttcctgaagGTCCCTCTGCTGGTGGTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGCTCCACTCTGCTTTTTTCTTCGAAGTCAACCTGCTAAGGAAGAAAAAATGgtaaccaagccactactttttttccaacatttctccatggccatctggat #### Slc1a1_ID6162_2 --> 2 - 1 Original Alignment gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg atgtgctagagaactgaaaatgtttcccatctttctatctttctctacaggaATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAggtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc Alignment from CESAR gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg atgtgctagagaactgaaaatgtttcccatctttctatctttctctacaggaATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAggtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc Alignment from Spaln_aa2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgctagagaactgaaaatgtttcccatctttctatctttctctacagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAGgtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc Alignment from Spaln_nt2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgctagagaactgaaaatgtttcccatctttctatctttctctacagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAGgtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc Alignment from Pairagon GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgctagagaactgaaaatgtttcccatctttctatctttctctacagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAGgtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc Alignment from Exonerate_protein2genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgctagagaactgaaaatgtttcccatctttctatctttctctacagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAGgtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc Alignment from Exonerate_coding2genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGA--AATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgctagagaactgaaaatgtttcccatctttctatctttctctacagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCT--GGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAGgtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc Alignment from GeneWise GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgctagagaactgaaaatgtttcccatctttctatctttctctacagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCCAGCATGATCACAGgtaatcggtgttctctgatcatttcaggagtgtatgaggaccagggttgc #### Slc1a1_ID6173_10 --> 1 - 2 Original Alignment tTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCag actgaggcctggcctacttagacctaaatgccattcctttttgtccacagtTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCaggtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc Alignment from CESAR tTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCag actgaggcctggcctacttagacctaaatgccattcctttttgtccacagtTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCaggtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc Alignment from Spaln_aa2Genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG actgaggcctggcctacttagacctaaatgccattcctttttgtccacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCAGgtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc Alignment from Spaln_nt2Genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG actgaggcctggcctacttagacctaaatgccattcctttttgtccacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCAGgtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc Alignment from Pairagon TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG actgaggcctggcctacttagacctaaatgccattcctttttgtccacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCAGgtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc Alignment from Exonerate_protein2genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG actgaggcctggcctacttagacctaaatgccattcctttttgtccacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCAGgtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc Alignment from Exonerate_coding2genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG actgaggcctggcctacttagacctaaatgccattcctttttgtccacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCAGgtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc Alignment from GeneWise TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG actgaggcctggcctacttagacctaaatgccattcctttttgtccacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGATGGCACTGCGCTCTATGAAGCTGTGGCAGCTGTGTTTATTGCACAACTGAATGGCTTGGACCTAAGCATTGGGCAGATTGTGACCATCAGgtaaaatacaatggtgctctcactacatctctgttgggactgcctccagc #### Slc1a1_ID6174_11 --> 1 - 2 Original Alignment cATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCct cctgagaaatgggtatctaacccctgactattttgttttttctttttaagtATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCttgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc Alignment from CESAR cATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCct cctgagaaatgggtatctaacccctgactattttgttttttctttttaagtATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCttgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc Alignment from Spaln_aa2Genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cctgagaaatgggtatctaacccctgactattttgttttttctttttaagTATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc Alignment from Spaln_nt2Genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cctgagaaatgggtatctaacccctgactattttgttttttctttttaagTATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc Alignment from Pairagon CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cctgagaaatgggtatctaacccctgactattttgttttttctttttaagTATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc Alignment from Exonerate_protein2genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cctgagaaatgggtatctaacccctgactattttgttttttctttttaagTATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc Alignment from Exonerate_coding2genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cctgagaaatgggtatctaacccctgactattttgttttttctttttaagTATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc Alignment from GeneWise CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cctgagaaatgggtatctaacccctgactattttgttttttctttttaagTATTACAGCCACTGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtgagtagggacaaaagcccctgcctgggttggttgggcaggtacttccc #### Slc22a19_ID2209_4 --> 2 - 2 Original Alignment taTTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAag tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagtaTTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAaggtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc Alignment from CESAR taTTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAag tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagtaTTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAaggtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc Alignment from Spaln_aa2Genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagTATTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAGgtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc Alignment from Spaln_nt2Genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagTATTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAGgtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc Alignment from Pairagon TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagTATTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAGgtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc Alignment from Exonerate_protein2genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagTATTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAGgtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc Alignment from Exonerate_coding2genome TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagTATTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAGgtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc Alignment from GeneWise TATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAG tattcttcccaacttccttagacgtcaatactctgttttgtgaattgtagTATTAAAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAATGGCGCTGATATTTATTGCCTCAGGGGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAACTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAGgtaagagcgttctttcctcctctgtgtcctctgtgttgtgggatccaggc #### Slc22a20_ID1345_8 --> 2 - 2 Original Alignment atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagatCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCCG------ATCaggtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca Alignment from CESAR atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagatCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCCG------ATCaggtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca Alignment from Spaln_aa2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagATCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCCG------ATCAGgtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca Alignment from Spaln_nt2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagATCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCC------GATCAGgtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca Alignment from Pairagon ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagATCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCC------GATCAGgtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca Alignment from Exonerate_protein2genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagATCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCCG------ATCAGgtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca Alignment from Exonerate_coding2genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagATCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCCG------ATCAGgtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca Alignment from GeneWise ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG aggcgtgtgccaccacacccagcttccaatcttatttcctctgtttacagATCTGCAGACCTTGCGGACTGTGCAGGCAGCACTGGGCAAAGGCTGTCTGGCCAGCTCCTTCATTTGCGTATATCTATTCATGGGAGAACTATATCCG------ATCAGgtaagtatgagaggatgcccatgctggcaagttcactatcttccctggca #### Slc22a20_ID1347_6 --> 0 - 2 Original Alignment GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCtg aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCtggtgagtgatggctcatccctttggcctgagacggggacatgctttatgct Alignment from CESAR GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCtg aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCtggtgagtgatggctcatccctttggcctgagacggggacatgctttatgct Alignment from Spaln_aa2Genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCTGgtgagtgatggctcatccctttggcctgagacggggacatgctttatgct Alignment from Spaln_nt2Genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCTGgtgagtgatggctcatccctttggcctgagacggggacatgctttatgct Alignment from Pairagon GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCTGgtgagtgatggctcatccctttggcctgagacggggacatgctttatgct Alignment from Exonerate_protein2genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCTGgtgagtgatggctcatccctttggcctgagacggggacatgctttatgct Alignment from Exonerate_coding2genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCTGgtgagtgatggctcatccctttggcctgagacggggacatgctttatgct Alignment from GeneWise GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatgagaaaactggcgtcccagtgtgccctctaacagggctgttttgcagGTAGTAAGCTCCTATATCCAGGATGAGTTTGCAAGTGTCCGCACCACCAACTCTATCTTGGACCTCTTTAGAACTCCTGCCATCAGAAGGGTCATGTGCTGTCTCATGGGGGTCTGgtgagtgatggctcatccctttggcctgagacggggacatgctttatgct #### Slc22a20_ID1348_5 --> 1 - 0 Original Alignment gTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccaggTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga Alignment from CESAR gTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccaggTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga Alignment from Spaln_aa2Genome GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccagGTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga Alignment from Spaln_nt2Genome GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccagGTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga Alignment from Pairagon GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccagGTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga Alignment from Exonerate_protein2genome GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccagGTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga Alignment from Exonerate_coding2genome GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccagGTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga Alignment from GeneWise GTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCACGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGGAGAGGCTGACTACAGAG gttcaggctaccctggaacccagaaatcgtatgctcctgcctctatccagGTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCATGGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCAGAAGGGGAGAGGCTGACTACAGAGgtcagtgggtgggtggaaggctgggctaggtttttgtagcactgacaaga #### Slc22a20_ID1350_3 --> 1 - 1 Original Alignment gTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGg tctcggactccttggtgaggattccctacgaactgtttgattttcaacaggTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGggtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga Alignment from CESAR gTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGg tctcggactccttggtgaggattccctacgaactgtttgattttcaacaggTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGggtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga Alignment from Spaln_aa2Genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG tctcggactccttggtgaggattccctacgaactgtttgattttcaacagGTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGGgtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga Alignment from Spaln_nt2Genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG tctcggactccttggtgaggattccctacgaactgtttgattttcaacagGTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGGgtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga Alignment from Pairagon GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG tctcggactccttggtgaggattccctacgaactgtttgattttcaacagGTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGGgtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga Alignment from Exonerate_protein2genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG tctcggactccttggtgaggattccctacgaactgtttgattttcaacagGTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGGgtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga Alignment from Exonerate_coding2genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG tctcggactccttggtgaggattccctacgaactgtttgattttcaacagGTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGGgtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga Alignment from GeneWise GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG tctcggactccttggtgaggattccctacgaactgtttgattttcaacagGTTGGGCCACAAGGCCCCATTGGTGTGGTCATACCTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTGGGCTCTTTCAGTGCCTACTGTGTCTTCCGCTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTTAACTCCCTCTCCCTGGgtatgtccagtccaggcaggacccagaggggctggggtcacgcaacaaga #### Slc22a26_ID2217_8 --> 2 - 2 Original Alignment aaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCag ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagaaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCaggtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct Alignment from CESAR aaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCag ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagaaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCaggtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct Alignment from Spaln_aa2Genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagAAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCAGgtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct Alignment from Spaln_nt2Genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagAAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCAGgtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct Alignment from Pairagon AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagAAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCAGgtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct Alignment from Exonerate_protein2genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagAAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCAGgtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct Alignment from Exonerate_coding2genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagAAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCAGgtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct Alignment from GeneWise AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ccgatagtgctacattctgcataaattgtgttccccttttatatttgcagAAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCTACGGTGATCAGgtaagagactttatcaacagaagtcaattgtaatgataacaaatatggct #### Slc22a26_ID2218_7 --> 1 - 1 Original Alignment aTTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAg aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagaTTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAggtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa Alignment from CESAR aTTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAg aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagaTTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAggtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa Alignment from Spaln_aa2Genome ATTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagATTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAGgtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa Alignment from Spaln_nt2Genome ATTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagATTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAGgtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa Alignment from Pairagon ATTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagATTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAGgtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa Alignment from Exonerate_protein2genome ATTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagATTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAGgtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa Alignment from Exonerate_coding2genome ATTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagATTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAGgtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa Alignment from GeneWise ATTTCTACAAATATCACCTACTGTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG aaacatggattttaagcatatgatgcgagttttgttttgtttttcaccagATTTCTACAAATTTCACCTACTTTAGGGATCAACATGAACCTCCGACACTTGAAAGGCAATGTCTTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACCGAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAGgtaaaaaatgaccttaacacaaaagaaaagtagtactaagtcccttttaa #### Slc22a26_ID2223_2 --> 0 - 2 Original Alignment TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACaa tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACaagtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca Alignment from CESAR TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACaa tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACaagtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca Alignment from Spaln_aa2Genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACAAgtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca Alignment from Spaln_nt2Genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACAAgtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca Alignment from Pairagon TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACAAgtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca Alignment from Exonerate_protein2genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACAAgtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca Alignment from Exonerate_coding2genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACAAgtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca Alignment from GeneWise TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA tggatatattaaacaaatttcactgccatagccttgttctcttctcatagTGGAACCTGGTGTGTGGTTCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTACTTGGTGTGTTGGCAGGACATTTTGTTGGTGGACATCTACCAGACAAgtaagtatcctattctttacggtgttctttggatatgaatgtattcaaca #### Slc22a27_ID2229_9 --> 1 - 2 Original Alignment gGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATga aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccaggGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATgagtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg Alignment from CESAR gGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATga aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccaggGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATgagtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg Alignment from Spaln_aa2Genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg Alignment from Spaln_nt2Genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg Alignment from Pairagon GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg Alignment from Exonerate_protein2genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg Alignment from Exonerate_coding2genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg Alignment from GeneWise GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAT aagtgtgcattcttaccagatttttctcctgccctctcccgctgccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAGtaaagaaaacttctcagtccccttaggtgatttgtttgctatttccctg #### Slc22a27_ID2230_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tattacagccaagctgaactaaccactacttctctctttctgtattccagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggttaggattttgagtcaatcatagaatagatctctctgacagggaacctg Alignment from CESAR aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tattacagccaagctgaactaaccactacttctctctttctgtattccagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggttaggattttgagtcaatcatagaatagatctctctgacagggaacctg Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactacttctctctttctgtattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgttaggattttgagtcaatcatagaatagatctctctgacagggaacctg Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactacttctctctttctgtattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgttaggattttgagtcaatcatagaatagatctctctgacagggaacctg Alignment from Pairagon AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactacttctctctttctgtattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgttaggattttgagtcaatcatagaatagatctctctgacagggaacctg Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactacttctctctttctgtattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgttaggattttgagtcaatcatagaatagatctctctgacagggaacctg Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactacttctctctttctgtattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgttaggattttgagtcaatcatagaatagatctctctgacagggaacctg Alignment from GeneWise AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactacttctctctttctgtattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgttaggattttgagtcaatcatagaatagatctctctgacagggaacctg #### Slc22a28_ID2244_7 --> 1 - 1 Original Alignment aTATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAg tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagaTATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAggtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca Alignment from CESAR aTATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAg tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagaTATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAggtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca Alignment from Spaln_aa2Genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagATATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAGgtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca Alignment from Spaln_nt2Genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagATATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAGgtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca Alignment from Pairagon ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagATATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAGgtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca Alignment from Exonerate_protein2genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagATATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAGgtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca Alignment from Exonerate_coding2genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagATATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAGgtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca Alignment from GeneWise ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG tagcacctgttaaacatccgttctaaacagattctgcttttccaatttagATATTTATTTACGGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACAAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTGCCTCAAGgtgagcaaagagtacaggtaggcaaaaaaaaaaacccagacccaaaacca #### Slc22a28_ID2246_5 --> 1 - 0 Original Alignment gTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacaggTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat Alignment from CESAR gTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacaggTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat Alignment from Spaln_aa2Genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacagGTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat Alignment from Spaln_nt2Genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacagGTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat Alignment from Pairagon GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacagGTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat Alignment from Exonerate_protein2genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacagGTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat Alignment from Exonerate_coding2genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacagGTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat Alignment from GeneWise GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG atggaaaatgacattacaagtattgctttgtggccttttgtcgcccacagGTGGATGTCGGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTGGAAGAGTTGCGGACATGAATGGAATGAAGAATTCTGGAAATACCCTAACTATGGAGgtacgtataatgggtggcgcaccagctggttatgacatgagaaaatcaat #### Slc22a28_ID2248_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCa aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccaggTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCagtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc Alignment from CESAR gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCa aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccaggTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCagtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccagGTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCAgtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccagGTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCAgtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc Alignment from Pairagon GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccagGTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCAgtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccagGTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCAgtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccagGTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCAgtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc Alignment from GeneWise GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aagcaacctgaatcttctgtctaatctagtcttctcactttgattcccagGTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCTGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCAgtatgccaaagagtttgagatgggccctgggtcaaacttaggtcttgacc #### Slc22a29_ID2256_7 --> 1 - 1 Original Alignment aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagaCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc Alignment from CESAR aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagaCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc Alignment from Spaln_aa2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc Alignment from Spaln_nt2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc Alignment from Pairagon ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc Alignment from Exonerate_protein2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc Alignment from Exonerate_coding2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc Alignment from GeneWise ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG aaagccaattcctaaccttgtgatacccttagcctcttctctctcctcagACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtaagcaaagaattacaggtaagcaaaaaaaaaaaaaaaaaaaagaaagc #### Slc22a29_ID2259_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAag agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagtgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAaggtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg Alignment from CESAR tgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAag agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagtgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAaggtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagTGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAAGgtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagTGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAAGgtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagTGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAAGgtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagTGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAAGgtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagTGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAAGgtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG agggcttgactctcaaatcccttttaattcaaggtgacactttcttttagTGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCACCAATATTCTTCTTCCTTATACTCACAAGgtatgtgttatctctccttttctatgttacaaaattctgtgaaagtaatg #### Slc22a6_ID2286_7 --> 1 - 1 Original Alignment gTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGg gccagttccacatccttctctcttgtcatcccctcttctcctcatgacaggTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGggtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt Alignment from CESAR gTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGg gccagttccacatccttctctcttgtcatcccctcttctcctcatgacaggTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGggtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt Alignment from Spaln_aa2Genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagttccacatccttctctcttgtcatcccctcttctcctcatgacagGTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGGgtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt Alignment from Spaln_nt2Genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagttccacatccttctctcttgtcatcccctcttctcctcatgacagGTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGGgtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt Alignment from Pairagon GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagttccacatccttctctcttgtcatcccctcttctcctcatgacagGTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGGgtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt Alignment from Exonerate_protein2genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagttccacatccttctctcttgtcatcccctcttctcctcatgacagGTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGGgtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt Alignment from Exonerate_coding2genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagttccacatccttctctcttgtcatcccctcttctcctcatgacagGTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGGgtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt Alignment from GeneWise GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagttccacatccttctctcttgtcatcccctcttctcctcatgacagGTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATTCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGCGCTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGTTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCGAGGGgtaacaacttgccagtctctcagctctcagtgccacccaccctacccctt #### Slc22a6_ID2287_8 --> 2 - 2 Original Alignment gcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTcg ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcaggcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTcggtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc Alignment from CESAR gcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTcg ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcaggcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTcggtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc Alignment from Spaln_aa2Genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcagGCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTCGgtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc Alignment from Spaln_nt2Genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcagGCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTCGgtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc Alignment from Pairagon GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcagGCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTCGgtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc Alignment from Exonerate_protein2genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcagGCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTCGgtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc Alignment from Exonerate_coding2genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcagGCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTCGgtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc Alignment from GeneWise GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcactccctgtgctccctgtgcactggtctctgttgtttcagGCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCTTTCAACTGCATCTACCTGTACACCGGAGAGCTGTACCCCACAATGATTCGgtaatggggaccccagtacatggaggatttagggaaaggcagtcctttgc #### Slc22a8_ID2272_5 --> 1 - 0 Original Alignment gTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcaggTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc Alignment from CESAR gTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcaggTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc Alignment from Spaln_aa2Genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcagGTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc Alignment from Spaln_nt2Genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcagGTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc Alignment from Pairagon GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcagGTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc Alignment from Exonerate_protein2genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcagGTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc Alignment from Exonerate_coding2genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcagGTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc Alignment from GeneWise GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG cagaggagacactagaacaggagccactgtgttaacgtttgtctctgcagGTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAATGGCAAGAAGGAGGAAGGGGAAAAGCTCACCGTGGAGgtaagtggggaaggggtgtaactgaagcagaatcatgtatctgcgtctcc #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttaggaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttaggaGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from Exonerate_coding2genome GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg Alignment from GeneWise GAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAG tggacttgctttttagacttggcacctctcttaaaatccttctgttttagGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCGACACTGTAAAGgtaggagtagcaaaggcacgggaggaagagatggtctcactagaacctgg #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG gggacacaaaagctcaccacgagtaacaacctctccctctcctgtgccagGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATTGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACCTCCCATCAGGAGCGACAGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGgtgagagtgtcattgttgctgggctgctggcatactttcagtccaccgaa #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGtggtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGtggtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGTGgtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGTGgtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGTGgtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGTGgtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGTGgtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG gggggggtgctttctgacatcacactgtgattctgctctgctgtcctcagTACTTCCAGGGGCGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGTCCCACTGACACGTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTTTTCACGCTCCTCAACTCCTTCCTGTATCAGTGgtatggaccagacctaaccaaccccttcccagtcacagtcacagaggccg #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagatGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagatGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG gtttggtaaagcgagtcatgtgtctgacgctctgcttcctctggtgctagATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGTCCGACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCAGAGGAGCCACAGAAACCGGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAAgttggctgccttgtggaagaggaaggttcaactcagagattagcttctaa #### Slc35g1_ID7589_2 --> 2 - 2 Original Alignment aaGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAaa tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagaaGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAaagtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt Alignment from CESAR aaGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAaa tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagaaGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAaagtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt Alignment from Spaln_aa2Genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt Alignment from Spaln_nt2Genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt Alignment from Pairagon AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt Alignment from Exonerate_protein2genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt Alignment from Exonerate_coding2genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt Alignment from GeneWise AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcgatacatgcttgagacaaggactattcttgggtttatcttacttagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTTGGCTTGTTTTACATAGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCACGCTGTAGAGATCAGTGCGTTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtatgtacttcatagagcgaatagaggagataggtatgtgtgtaaatctt #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Spaln_aa2Genome GCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagcctgtgaagGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtacccaccctttttttttttttttaaaaaaattgtcttcttctttgtagCCTGTGAAGGCCCCACTCATGCCATGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAGgtaagtagttgcggtctgcccctcagggtggtcaagtgttgtacagatgg #### Slit1_ID8203_35 --> 2 - 2 Original Alignment ggATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaa acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagggATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaagtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt Alignment from CESAR ggATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaa acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagggATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaagtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt Alignment from Spaln_aa2Genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagGGATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt Alignment from Spaln_nt2Genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagGGATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt Alignment from Pairagon GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagGGATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt Alignment from Exonerate_protein2genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagGGATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt Alignment from Exonerate_coding2genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagGGATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt Alignment from GeneWise GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcctatcctcccctctgtcctctccagGGATGCCTGTGGATGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGCGTGGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtgctgccaggttggaccaagagagccatccactcaccatctgtcctttt #### Slit1_ID8207_31 --> 1 - 2 Original Alignment gTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACag caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtaggTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACaggtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac Alignment from CESAR gTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACag caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtaggTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACaggtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac Alignment from Spaln_aa2Genome GTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAG caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtagGTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAGgtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac Alignment from Spaln_nt2Genome GTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAG caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtagGTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAGgtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac Alignment from Pairagon GTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAG caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtagGTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAGgtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac Alignment from Exonerate_protein2genome GTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAG caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtagGTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAGgtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac Alignment from Exonerate_coding2genome GTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAG caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtagGTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAGgtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac Alignment from GeneWise GTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAG caggtgtaagaacaggacccagtgtgtgccgagccctccccattctgtagGTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAAAATCAGGATGACTGCAAGGACCACAAGTGTAAGAACGGGGCCCAGTGTGTGGATGAAGTTAACAGCTACGCCTGCCTCTGTGTTGAGGGCTACAGgtaaggcactctagccatactgtgagaaacccccctgccacaggtgggac #### Slit1_ID8208_30 --> 2 - 2 Original Alignment gaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag gggccccatggagatcaacatcccttgcatccttctccattcctcaccaggaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCaggtgagggttgtccactgccagggacaccagtctagttttggcctcctctc Alignment from CESAR gaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag gggccccatggagatcaacatcccttgcatccttctccattcctcaccaggaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCaggtgagggttgtccactgccagggacaccagtctagttttggcctcctctc Alignment from Spaln_aa2Genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG gggccccatggagatcaacatcccttgcatccttctccattcctcaccagGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCAGgtgagggttgtccactgccagggacaccagtctagttttggcctcctctc Alignment from Spaln_nt2Genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG gggccccatggagatcaacatcccttgcatccttctccattcctcaccagGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCAGgtgagggttgtccactgccagggacaccagtctagttttggcctcctctc Alignment from Pairagon GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG gggccccatggagatcaacatcccttgcatccttctccattcctcaccagGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCAGgtgagggttgtccactgccagggacaccagtctagttttggcctcctctc Alignment from Exonerate_protein2genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG gggccccatggagatcaacatcccttgcatccttctccattcctcaccagGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCAGgtgagggttgtccactgccagggacaccagtctagttttggcctcctctc Alignment from Exonerate_coding2genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG gggccccatggagatcaacatcccttgcatccttctccattcctcaccagGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCAGgtgagggttgtccactgccagggacaccagtctagttttggcctcctctc Alignment from GeneWise GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG gggccccatggagatcaacatcccttgcatccttctccattcctcaccagGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCATGTCAGCATGAGGCCCAATGTGTTGGCACCCCAGATGGGCCCAGgtgagggttgtccactgccagggacaccagtctagttttggcctcctctc #### Slit1_ID8209_29 --> 1 - 1 Original Alignment gTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAg atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcaggTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAggtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg Alignment from CESAR gTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAg atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcaggTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAggtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg Alignment from Spaln_aa2Genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAGgtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg Alignment from Spaln_nt2Genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAGgtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg Alignment from Pairagon GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAGgtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg Alignment from Exonerate_protein2genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAGgtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg Alignment from Exonerate_coding2genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAGgtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg Alignment from GeneWise GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcaggttttcccagctccttccctggtggtttttgtcctttcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCGACCTGTGGAGTGGACACGGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAGgtgagaactgcagagtcctgggcatccccaatcctgctggcatgccagtg #### Slit1_ID8223_16 --> 2 - 2 Original Alignment ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGct actgcttggagcttacttaggccctcaaatatatggtcttttgcctacagggACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGctgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt Alignment from CESAR ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGct actgcttggagcttacttaggccctcaaatatatggtcttttgcctacagggACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGctgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt Alignment from Spaln_aa2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT actgcttggagcttacttaggccctcaaatatatggtcttttgcctacagGGACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGCTgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt Alignment from Spaln_nt2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT actgcttggagcttacttaggccctcaaatatatggtcttttgcctacagGGACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGCTgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt Alignment from Pairagon GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT actgcttggagcttacttaggccctcaaatatatggtcttttgcctacagGGACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGCTgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt Alignment from Exonerate_protein2genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT actgcttggagcttacttaggccctcaaatatatggtcttttgcctacagGGACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGCTgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt Alignment from Exonerate_coding2genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT actgcttggagcttacttaggccctcaaatatatggtcttttgcctacagGGACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGCTgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt Alignment from GeneWise CCAAAGAGCAGTAC---TTCATTCCA---GGGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCT actgcttggagcttacttagGCCCTCAAATATATGGTCTTTTGCCTACAGGGACAGAAGACTACCACCTGAACAGCGAGTGTACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACAACTGAGCTgtactgcctgtggtgcccacccaactcccacctccattcctgtgcctggt #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from CESAR cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Pairagon CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct #### Slit1_ID8230_9 --> 2 - 2 Original Alignment gcCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat ggggagtggcaataagaggttccctgacgttagaggctctcttctttcaggtCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGgtgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac Alignment from CESAR gcCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat ggggagtggcaataagaggttccctgacgttagaggctctcttctttcaggtCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGgtgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac Alignment from Spaln_aa2Genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ggggagtggcaataagaggttccctgacgttagaggctctcttctttcagGTCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGGTgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac Alignment from Spaln_nt2Genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ggggagtggcaataagaggttccctgacgttagaggctctcttctttcagGTCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGGTgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac Alignment from Pairagon GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ggggagtggcaataagaggttccctgacgttagaggctctcttctttcagGTCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGGTgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac Alignment from Exonerate_protein2genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ggggagtggcaataagaggttccctgacgttagaggctctcttctttcagGTCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGGTgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac Alignment from Exonerate_coding2genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ggggagtggcaataagaggttccctgacgttagaggctctcttctttcagGTCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGGTgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac Alignment from GeneWise GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT ggggagtggcaataagaggttccctgacgttagaggctctcttctttcagGTCAGGGGGAGGCTGCAGGAGCACCTGCCTGCACCCTCTCATCGGGTTCCTGCCCCGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGTCGTGGCAAGGGCCTCACCGCCATCCCTGCCAACCTTCCAGAGACCATGACAGAGGTgtatgtgcagagctaagcaggctattctgttcagcgatgagaagtagcac #### Slit1_ID8231_8 --> 1 - 1 Original Alignment cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagcCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAggtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt Alignment from CESAR cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagcCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAggtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt Alignment from Spaln_aa2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagCCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAGgtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt Alignment from Spaln_nt2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagCCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAGgtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt Alignment from Pairagon CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagCCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAGgtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt Alignment from Exonerate_protein2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagCCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAGgtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt Alignment from Exonerate_coding2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagCCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAGgtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt Alignment from GeneWise CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG cctgcttggggaaatgggtgatggatccggtggtgttttccttgttgcagCCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTAGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAAGTGCAGAAGGGCGAGTTCAGTTGCTCAGgtaacagcctatctcatcagccttcccctgctggcttgtcctccttagtt #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccaggACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTttgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccaggACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTttgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Exonerate_coding2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc #### Slit1_ID8234_5 --> 1 - 2 Original Alignment gGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATct accatgaccctcctgactggtaccctttctctgctcctctcccctacaagaGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATctgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat Alignment from CESAR gGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATct accatgaccctcctgactggtaccctttctctgctcctctcccctacaagaGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATctgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat Alignment from Spaln_aa2Genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT accatgaccctcctgactggtaccctttctctgctcctctcccctacaagAGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat Alignment from Spaln_nt2Genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT accatgaccctcctgactggtaccctttctctgctcctctcccctacaagAGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat Alignment from Pairagon GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT accatgaccctcctgactggtaccctttctctgctcctctcccctacaagAGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat Alignment from Exonerate_protein2genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT accatgaccctcctgactggtaccctttctctgctcctctcccctacaagAGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat Alignment from Exonerate_coding2genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT accatgaccctcctgactggtaccctttctctgctcctctcccctacaagAGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat Alignment from GeneWise GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT accatgaccctcctgactggtaccctttctctgctcctctcccctacaagAGACCTGAGTGAGAATTTTCTTCAGGCTGTGCCC---AAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTgtcagaagaggcttgcaatggtcaccctgacacactcctgtctgtaccat #### Slk_ID10250_6 --> 1 - 2 Original Alignment gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg ttgatgactattatttaaatatcttaacggtgacccagctatcctcccaggATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAAtggttagttaatttaaaagaagttttgtttttttaaagattatttattatat Alignment from CESAR gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg ttgatgactattatttaaatatcttaacggtgacccagctatcctcccaggATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAAtggttagttaatttaaaagaagttttgtttttttaaagattatttattatat Alignment from Spaln_aa2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG ttgatgactattatttaaatatcttaacggtgacccagctatcctcccagGATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAATGgttagttaatttaaaagaagttttgtttttttaaagattatttattatat Alignment from Spaln_nt2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG ttgatgactattatttaaatatcttaacggtgacccagctatcctcccagGATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAATGgttagttaatttaaaagaagttttgtttttttaaagattatttattatat Alignment from Pairagon GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG ttgatgactattatttaaatatcttaacggtgacccagctatcctcccagGATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAATGgttagttaatttaaaagaagttttgtttttttaaagattatttattatat Alignment from Exonerate_protein2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG ttgatgactattatttaaatatcttaacggtgacccagctatcctcccagGATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAATGgttagttaatttaaaagaagttttgtttttttaaagattatttattatat Alignment from Exonerate_coding2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG ttgatgactattatttaaatatcttaacggtgacccagctatcctcccagGATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAATGgttagttaatttaaaagaagttttgtttttttaaagattatttattatat Alignment from GeneWise GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG ttgatgactattatttaaatatcttaacggtgacccagctatcctcccagGATGGCTCCTGAAGTAGTCATGTGCGAGACATCAAAGGACACACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCACGATTTAAATCCAATGCGTGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCCCAGCCATCCAAATGgttagttaatttaaaagaagttttgtttttttaaagattatttattatat #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat Alignment from Pairagon TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG gcttctgcaatcaggtaactaaattattccttgccaaattgtcttttcagTTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAGCATGAGAGCCAGATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGTTGCCGgtgagtctcagaagcctggcaataagaatatgcagggggagtgcgttgat #### Smarca2_ID5724_8 --> 0 - 0 Original Alignment GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc Alignment from CESAR GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc Alignment from Spaln_aa2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc Alignment from Spaln_nt2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc Alignment from Pairagon GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc Alignment from Exonerate_protein2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc Alignment from Exonerate_coding2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc Alignment from GeneWise GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgtggctgtgagtgtcagtatcatactgaaacttttgaactcttttctagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACTGATGAGTACGTCGCCAATCTCACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaagactggttttagatgaacactgttctctaatgaaaagc #### Smarca2_ID5730_12 --> 0 - 2 Original Alignment GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTgagtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag Alignment from CESAR GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTgagtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag Alignment from Spaln_aa2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGAgtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag Alignment from Spaln_nt2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGAgtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag Alignment from Pairagon GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGAgtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag Alignment from Exonerate_protein2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGAgtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag Alignment from Exonerate_coding2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGAgtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag Alignment from GeneWise GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA actgtgcccattaagatacatgcctggcagcactgccttgcctttcacagGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGAgtaaataggcctttcatgacaagtgcagtcagtgtttgaggttcatgtag #### Smarca2_ID5732_14 --> 0 - 2 Original Alignment CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGtcgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc Alignment from CESAR CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGtcgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc Alignment from Spaln_aa2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGTCgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc Alignment from Spaln_nt2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGTCgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc Alignment from Pairagon CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGTCgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc Alignment from Exonerate_protein2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGTCgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc Alignment from Exonerate_coding2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGTCgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc Alignment from GeneWise CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC aactacctgtgtggatcttggataattggtgctctcctttcctcttccagCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCATCCCGCTGTCgtgagcacaccagaagcaaagaatctgaagcaatgttgttcttagtttcc #### Smarca2_ID5758_27 --> 0 - 2 Original Alignment GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaaagccctggctccttcctctccaccaagtccttgagcagtttggact Alignment from CESAR GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaaagccctggctccttcctctccaccaagtccttgagcagtttggact Alignment from Spaln_aa2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctggctccttcctctccaccaagtccttgagcagtttggact Alignment from Spaln_nt2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctggctccttcctctccaccaagtccttgagcagtttggact Alignment from Pairagon GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctggctccttcctctccaccaagtccttgagcagtttggact Alignment from Exonerate_protein2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctggctccttcctctccaccaagtccttgagcagtttggact Alignment from Exonerate_coding2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctggctccttcctctccaccaagtccttgagcagtttggact Alignment from GeneWise GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tattttccttacttagattttttctttctggccgccttcatctcccccagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAGATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctggctccttcctctccaccaagtccttgagcagtttggact #### Smc3_ID11315_3 --> 2 - 1 Original Alignment tgGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATg aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagtgGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATggtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc Alignment from CESAR tgGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATg aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagtgGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATggtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc Alignment from Spaln_aa2Genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc Alignment from Spaln_nt2Genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc Alignment from Pairagon TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc Alignment from Exonerate_protein2genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc Alignment from Exonerate_coding2genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc Alignment from GeneWise TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG aattgtctggtttttatatgaactaatcctccttatcacctggtggtcagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtaagaatagatttctggattttttagctatgaattcaagtgtctgtagc #### Smc3_ID11317_5 --> 0 - 0 Original Alignment GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg Alignment from CESAR GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg Alignment from Spaln_aa2Genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg Alignment from Spaln_nt2Genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg Alignment from Pairagon GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg Alignment from Exonerate_protein2genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg Alignment from Exonerate_coding2genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg Alignment from GeneWise GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtagcacttaagttacaaataccctactaatatgctgtgttcttttccagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGATAACCGGTTACCAgtgcgtgacagtaaatgtcttttcaggaatgttgagaattttatgcaatg #### Smc3_ID11319_7 --> 1 - 0 Original Alignment gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtaggAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa Alignment from CESAR gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtaggAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa Alignment from Spaln_aa2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa Alignment from Spaln_nt2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa Alignment from Pairagon GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa Alignment from Exonerate_protein2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa Alignment from Exonerate_coding2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa Alignment from GeneWise GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG atgttttaaaattgtttatcctgaaaatctgtggttgtctgtctctgtagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtgggtgagttgggtctttcttttattttttttttttttatttgggaaaa #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG aatgctagctacacagtgatttagagtttatatgcatattttttaaatagCTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGATAAAATGGAGgtatgctcatgcctatgctcagtgttctttgaattgataagaattttttt #### Smc3_ID11325_13 --> 1 - 0 Original Alignment gTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacaggTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat Alignment from CESAR gTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacaggTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat Alignment from Spaln_aa2Genome GTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacagGTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat Alignment from Spaln_nt2Genome GTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacagGTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat Alignment from Pairagon GTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacagGTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat Alignment from Exonerate_protein2genome GTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacagGTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat Alignment from Exonerate_coding2genome GTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacagGTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat Alignment from GeneWise GTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACCGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAAT ggcctattgattataatttttatttctacagagaatgacttcctctacagGTTGGCTCAAGCTACACAGGAAAGAACTGATCTTTATGCAAAACAGGGTCGAGGAAGCCAGTTTACGTCAAAAGAAGAAAGGGATAAATGGATTAAAAAGGAACTGAAGTCTTTAGATCAGGCAATTAATGATAAGAAAAGACAGATTGCTGCTATTCACAAGGATTTGGAGGATACTGAGGCAAATAAAGAGAAAAATCTGGAGCAATATAATgtgaggaaagttttgctttatattttttggtttggtttgttggagatcat #### Smc3_ID11328_16 --> 0 - 2 Original Alignment GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACag agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACaggtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt Alignment from CESAR GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACag agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACaggtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt Alignment from Spaln_aa2Genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt Alignment from Spaln_nt2Genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt Alignment from Pairagon GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt Alignment from Exonerate_protein2genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt Alignment from Exonerate_coding2genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt Alignment from GeneWise GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG agactgctgctagtggtgctaatatttttctttctccttttcttgtttagGCCATTTTAAATGGTATAGATAGCATTAACAAAGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAGgtatgttttgggtttgggggttttttagggggtaggggttgtgtttcatt #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc #### Smc5_ID5116_17 --> 0 - 0 Original Alignment ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact Alignment from CESAR ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact Alignment from Spaln_aa2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact Alignment from Spaln_nt2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact Alignment from Pairagon ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact Alignment from Exonerate_protein2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact Alignment from Exonerate_coding2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact Alignment from GeneWise ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gcaactgaaacaacataaaaaccaaaattcctatttcctattgatgctagATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCATCACAGAAgtaagtcattcttcccttagtttttatattttagggcccaaccttaaact #### Smc5_ID5125_8 --> 0 - 0 Original Alignment TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt Alignment from CESAR TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt Alignment from Spaln_aa2Genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt Alignment from Spaln_nt2Genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt Alignment from Pairagon TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt Alignment from Exonerate_protein2genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt Alignment from Exonerate_coding2genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt Alignment from GeneWise TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG gctcacatgagtttttaattaaccttttactaataaatctgtgttcacagTCCACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGGCAGgtgagggttcgtcccaaaaactgcttaccttagtttacaatggcttgttt #### Smndc1_ID11280_2 --> 0 - 2 Original Alignment GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGAca agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGAcagtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta Alignment from CESAR GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGAca agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGAcagtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta Alignment from Spaln_aa2Genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGACAgtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta Alignment from Spaln_nt2Genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGACAgtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta Alignment from Pairagon GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGACAgtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta Alignment from Exonerate_protein2genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGACAgtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta Alignment from Exonerate_coding2genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGACAgtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta Alignment from GeneWise GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA agttgacagtattaaattacaaatgttagctgctgaattgccttttgcagGAAGTAATAGAACTGACTAAAGACCTTCTGTCAACTCAGTCTTCAGAGACTCTTGCAAGCTCAGACAGATTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCTGTGTGGAGTGAAGACGGACAgtgagtgtaggcactcactaaccgtaggatgttaataaaatacaatggta #### Snx15_ID1466_6 --> 2 - 1 Original Alignment tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagtgGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGggtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc Alignment from CESAR tgGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGg tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagtgGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGggtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc Alignment from Spaln_aa2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagTGGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGGgtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc Alignment from Spaln_nt2Genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagTGGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGGgtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc Alignment from Pairagon TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagTGGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGGgtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc Alignment from Exonerate_protein2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagTGGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGGgtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc Alignment from Exonerate_coding2genome TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagTGGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGGgtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc Alignment from GeneWise TGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGACCTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGG tcaagaagcaactgtaggtacagacatccctggttcttctgtccttccagTGGATCCCCTCCCATCCAGCCCTGCCCAGGAGGCCTTGGATCCTCTCTTCAGCTGTGACAGTACAGAGGAAGCTTCCAGTTCCCTGGCTCGAGGTCCTCTCTCTGAGGCTGAACTTGCCCTTTTCGACCCTTACTCCAAAGAGGgtgaggaacaggtgtgggtagcagaactaagggctatgaaggacaccctc #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagggCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagggCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG tacaccacagcaatacacacactggtgctcctcctccctcctgtccgcagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGGgtaaacatgtctgctaacaagccccacccccagtcagatccctcttcctg #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTggtgagtattgactctgaacatctctgccccagggcagcagggaactggtc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTggtgagtattgactctgaacatctctgccccagggcagcagggaactggtc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTGgtgagtattgactctgaacatctctgccccagggcagcagggaactggtc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTGgtgagtattgactctgaacatctctgccccagggcagcagggaactggtc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTGgtgagtattgactctgaacatctctgccccagggcagcagggaactggtc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTGgtgagtattgactctgaacatctctgccccagggcagcagggaactggtc Alignment from Exonerate_coding2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTGgtgagtattgactctgaacatctctgccccagggcagcagggaactggtc Alignment from GeneWise GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG aggcctctttccaccgtgcgggttcaggccaccctaatgactaatctcagGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCATGGGGACTTGGCCTATACTCACCGAAATCTCTTCCGTCATCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTGgtgagtattgactctgaacatctctgccccagggcagcagggaactggtc #### Snx15_ID1470_2 --> 0 - 0 Original Alignment TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc Alignment from CESAR TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc Alignment from Spaln_aa2Genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc Alignment from Spaln_nt2Genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc Alignment from Pairagon TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc Alignment from Exonerate_protein2genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc Alignment from Exonerate_coding2genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc Alignment from GeneWise TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gggttgtctgtcaccctctggtctcccctactgtcaaatgctacttgcagTTCATTTCAAAGAAGGACCCAGAGGATATCAAGGAGgtgagtgtggctcagtgtggctcccaggaagaagggctgtccctgtacgc #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAggttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAggttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG catcagcaacatccatgacaaaatccatgacctttaaccttctacctcagGACCTGTTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTTGAGCGCCTCTCTGACTCCGCCAAACAAGgttagtcctgaaggctggcaacaccccacccaacacccattatccatcct #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctaggGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT gaattatgatggagcccagtagggaggtcatatttctcttgatattctagGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATATAGCCAGGATgtgagttgattgattgagcatagtgggattgaagacaggctagggggaat #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAgcgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAgcgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aggatggatgcctgtgacagccccttggttttcatccatggcctttgcagCTTCCCCCAGCCCCTCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCGATCACCCGGGAAGAATTCTCCAAGATGAAACAGGAGCTAGAAGCgtgaggatctcccccacccctgcccattcctccagggtttcttcactaac #### Sorbs1_ID7901_21 --> 0 - 0 Original Alignment CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg Alignment from CESAR CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg Alignment from Spaln_aa2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg Alignment from Spaln_nt2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg Alignment from Pairagon CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg Alignment from Exonerate_protein2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg Alignment from Exonerate_coding2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg Alignment from GeneWise CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG gcattctcttctctgccttcttttgcccccctcctgcccccaattctcagCTCCTTCCTCCAGCGGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtaagtcgcccacctcatcctgatcacgctgttatctcagaggtgtgatg #### Sorbs1_ID7903_19 --> 0 - 2 Original Alignment ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaagtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt Alignment from CESAR ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaagtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt Alignment from Spaln_aa2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAgtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt Alignment from Spaln_nt2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAgtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt Alignment from Pairagon ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAgtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt Alignment from Exonerate_protein2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAgtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt Alignment from Exonerate_coding2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAgtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt Alignment from GeneWise ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactatcatgtttcttttgcccacagATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAgtatgcgcccaggcatgcttgtctccttaggcgcctcttcagaaagctgt #### Sorcs3_ID10523_2 --> 0 - 2 Original Alignment GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGag gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGaggtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc Alignment from CESAR GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGag gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGaggtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc Alignment from Spaln_aa2Genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc Alignment from Spaln_nt2Genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc Alignment from Pairagon GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc Alignment from Exonerate_protein2genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc Alignment from Exonerate_coding2genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc Alignment from GeneWise GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctttcctttcccttgttccactttcttcaacgcttctcttctcccacagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtgagcgaatttgaccatctgagagctgcctccactgctccctccactgc #### Sorcs3_ID10605_11 --> 0 - 1 Original Alignment CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGg gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGggtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag Alignment from CESAR CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGg gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGggtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag Alignment from Spaln_aa2Genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGGgtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag Alignment from Spaln_nt2Genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGGgtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag Alignment from Pairagon CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGGgtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag Alignment from Exonerate_protein2genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGGgtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag Alignment from Exonerate_coding2genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGGgtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag Alignment from GeneWise CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG gggtatggcttgagtttcttgcaacccatatatcccatgtttcctcacagCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCCGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGGCACAGCACCTGGACTTGTGGTTGCCACGGgtcagtatagttttactcaatccgtgtaaccctagttgttttttacctag #### Sorcs3_ID10608_12 --> 2 - 0 Original Alignment gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacaggtAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca Alignment from CESAR gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacaggtAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca Alignment from Spaln_aa2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacagGTAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca Alignment from Spaln_nt2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacagGTAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca Alignment from Pairagon GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacagGTAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca Alignment from Exonerate_protein2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacagGTAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca Alignment from Exonerate_coding2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacagGTAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca Alignment from GeneWise GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG cttaaaacataagcttccagacaatttcgcctgctgctttttaaacacagGTAATATTGGCTCCGAACTCTCCTATACGGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgtaagaagaagattccaaggaaagggggaatggttagagtaagtctgcca #### Sorcs3_ID10613_14 --> 1 - 2 Original Alignment gGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGac atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacaggGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGacgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac Alignment from CESAR gGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGac atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacaggGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGacgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac Alignment from Spaln_aa2Genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacagGGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGACgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac Alignment from Spaln_nt2Genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacagGGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGACgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac Alignment from Pairagon GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacagGGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGACgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac Alignment from Exonerate_protein2genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacagGGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGACgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac Alignment from Exonerate_coding2genome GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacagGGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGACgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac Alignment from GeneWise GGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATGGGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGAC atagtgactgtgttttcagctgtgtcttttcactgccctggctcctacagGGTGAGTTTTGACGAGGGCCATTCCTGGGACAAGTATGATTTCACATTGCTGCCTCTTTTTGTGGATGGGGTGTTAGTGGAGGCAGGAGTAGAGACGCACATCATGACgtcagcatttccttactgtggcagagaatagagtggagacctctgttcac #### Sorcs3_ID10621_15 --> 1 - 0 Original Alignment aGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagaGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca Alignment from CESAR aGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagaGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca Alignment from Spaln_aa2Genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagAGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca Alignment from Spaln_nt2Genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagAGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca Alignment from Pairagon AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagAGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca Alignment from Exonerate_protein2genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagAGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca Alignment from Exonerate_coding2genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagAGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca Alignment from GeneWise AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cattcggcttgtttttcacatcctatcctctatccacgctttcttctcagAGTTCTTGGCCACTTTAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTAGACTATAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAACCAGgtgagttactatgggacatgctggcctctccagcagcatagctattatca #### Sorcs3_ID10626_18 --> 1 - 0 Original Alignment gTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccaggTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc Alignment from CESAR gTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccaggTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc Alignment from Spaln_aa2Genome GTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccagGTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc Alignment from Spaln_nt2Genome GTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccagGTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc Alignment from Pairagon GTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccagGTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc Alignment from Exonerate_protein2genome GTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccagGTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc Alignment from Exonerate_coding2genome GTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccagGTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc Alignment from GeneWise GTACCGGAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCTCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTCATCATTCTAATGGAGGAG tttttttttatttgtttgcttgtttgttgaacagccgtctttacctccagGTACCGAAGGATTGTATCCAACAACTGCACAGATGGGCTAAGGGATAAATACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGCCCCTCGGGGCCTCCATGTAGTGACCACTGATGGGCGCCTGGTGGCAGAACAGAGTCACAATGCAACCTTCATCATTCTGATGGAGGAGgtaagcgaccagttgggtgtctgcagttagaacggcaagctgacagttcc #### Sorcs3_ID10632_21 --> 0 - 1 Original Alignment CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATggtgagttctgagtgcaatattcccctcattacccaagatataagttacat Alignment from CESAR CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATggtgagttctgagtgcaatattcccctcattacccaagatataagttacat Alignment from Spaln_aa2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgagtgcaatattcccctcattacccaagatataagttacat Alignment from Spaln_nt2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgagtgcaatattcccctcattacccaagatataagttacat Alignment from Pairagon CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgagtgcaatattcccctcattacccaagatataagttacat Alignment from Exonerate_protein2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgagtgcaatattcccctcattacccaagatataagttacat Alignment from Exonerate_coding2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgagtgcaatattcccctcattacccaagatataagttacat Alignment from GeneWise CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tctggtactctaaaaaagattgaaggtttcttatttccttcttttatcagCCCCTCATCACCTTGGACAGCAGCATCTCTTTCACCTTCCTTGCAGAGGGAACCAACACGATCACCGTCCAGGTTGCTGCTGGGAATGCGCTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgagtgcaatattcccctcattacccaagatataagttacat #### Sptbn2_ID606_2 --> 2 - 0 Original Alignment atGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagatGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg Alignment from CESAR atGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagatGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg Alignment from Spaln_aa2Genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagATGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg Alignment from Spaln_nt2Genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagATGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg Alignment from Pairagon ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagATGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg Alignment from Exonerate_protein2genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagATGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg Alignment from Exonerate_coding2genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagATGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg Alignment from GeneWise ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gccggcacactgtctggaatgatggaaatgctgggcttctgtctccatagATGAGCGAGAAGCCGTGCAGGAGAAAACCTTTACCAAGTGGGTGAACTCCCATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTGgtaaggtggggtaatccatggaagagggagcctcagagactggacaaggg #### Sptbn2_ID611_6 --> 1 - 1 Original Alignment gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacaggCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAggtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt Alignment from CESAR gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacaggCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAggtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt Alignment from Spaln_aa2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacagGCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAGgtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt Alignment from Spaln_nt2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacagGCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAGgtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt Alignment from Pairagon GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacagGCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAGgtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt Alignment from Exonerate_protein2genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacagGCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAGgtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt Alignment from Exonerate_coding2genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacagGCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAGgtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt Alignment from GeneWise GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG aggctctgacatgcttttgatgtgttttttttctgtaatatcttgtacagGCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTGACAAAGCTCCTGGATCCTGAAGgtgagtcagagtctgcaagacaggtgtagggaagacagaggctaacttgt #### Sptbn2_ID616_11 --> 0 - 0 Original Alignment GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg Alignment from CESAR GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg Alignment from Spaln_aa2Genome GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg Alignment from Spaln_nt2Genome GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg Alignment from Pairagon GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg Alignment from Exonerate_protein2genome GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg Alignment from Exonerate_coding2genome GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg Alignment from GeneWise GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG agaggtcctgtcccctggttctcccccacatccctcctttctggccccagGACAACTTTGGGTTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTTGCCTACAGCGGCCGGGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCAGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTAGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcttgtagtgccactcagctgggcaagcgtcctggggtgtg #### Sptbn2_ID621_16 --> 0 - 2 Original Alignment GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGag agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCGT---CGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGaggtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata Alignment from CESAR GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGag agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCGT---CGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGaggtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata Alignment from Spaln_aa2Genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCGT---CGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata Alignment from Spaln_nt2Genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCG---TCGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata Alignment from Pairagon GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCG---TCGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata Alignment from Exonerate_protein2genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCGT---CGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata Alignment from Exonerate_coding2genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCGT---CGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata Alignment from GeneWise GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG agaatctacatgctatgagaagtgagctagttatgtgacttgactttcagGAATATGTGTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATAAGCACTATGGACGCCAATGGAGAGCGT---CGTGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGAAATATCCATGCTGAGAAGATCCAAGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtgggaatggcagatctgaggaagcttagaggaaggtggctgata #### Sptbn2_ID624_19 --> 0 - 0 Original Alignment GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga Alignment from CESAR GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga Alignment from Spaln_aa2Genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga Alignment from Spaln_nt2Genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga Alignment from Pairagon GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga Alignment from Exonerate_protein2genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga Alignment from Exonerate_coding2genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga Alignment from GeneWise GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tcagtggagtccgattttgacacttacagcttctgtttctttggttttagGAAGGGCGGGAGCTGACTTTTGAAAAGCCAGAACTCAAAGTTGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGGTGGGATGAACTTGAGACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGACGCTAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGTTGGCTGGAGAGCCTGCAAGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATCCTACTGAAGAAGCAACAGgtaggtaaggggtcttcagggagatgaacagtcagacagcctgtggaaga #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagcACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagcACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gactgagcagttaggtgacacagagcaaagctaccttctctctgtcccagCACAAGACTAACAATACGGCAAGCCCAGGTGGACAAGCTGTATGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGATTATGAACATGTGACTgtacgttcctgcagtctagcagatgggatcaaggcctgtggggagacaaa #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcggtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcggtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCGgtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCGgtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCGgtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCGgtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCGgtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgctctctgccagcactgcctgactctgatattttctttttgtcctagGTCCAGCAAGTTCATGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGATAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCGgtaactcccatagtgcctggtgtccttcacaagttgtatgatgctattgg #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ttgcactctaaccttccaactttctataccctcatgtctcctgtctacagTTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGCGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGATGAAGTAGAGAGCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTGGCCTGGGAAGAGCGTTTCAGTGCACTGGATAAGCTCACTGCAgtaagtactgcaggacctcagaggtgcccaaccccattactgccttattt #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagaGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagaGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca #### Ssh3_ID453_3 --> 1 - 0 Original Alignment gCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccaggCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat Alignment from CESAR gCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccaggCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat Alignment from Spaln_aa2Genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat Alignment from Spaln_nt2Genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat Alignment from Pairagon GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat Alignment from Exonerate_protein2genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat Alignment from Exonerate_coding2genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat Alignment from GeneWise GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ctaaggtttgaaaacctatgatctgcacgaacacacacccctatctccagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGGATGGAGGGGACAGCAACGTTGCATCTGAGGCTGACTCTGAACCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACTGAGGACCAGACTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAAAAACGGCACCTGCACCTCATGGTGGAACTGCTGAGGCCGCAGGATGATATTCGCCTGgttatcaactatgcagagctcaagtctatctaagatcagtgctacgagat #### Ssh3_ID454_2 --> 0 - 2 Original Alignment CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCag ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCaggtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat Alignment from CESAR CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCag ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCaggtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat Alignment from Spaln_aa2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat Alignment from Spaln_nt2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat Alignment from Pairagon CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat Alignment from Exonerate_protein2genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat Alignment from Exonerate_coding2genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat Alignment from GeneWise CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG ctgcaggctgctctcttactccatactctactgtctccttgcctctccagCAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagatctgtctgacaaatgcttccttatagcgtgtgagctgctgccat #### Stambpl1_ID6899_6 --> 2 - 0 Original Alignment atTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGAAAACTG aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagatTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACTGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGGAAACTGgtaagctcttattccctgtttcaatagggttcattgagtggaactggctt Alignment from CESAR atTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGAAAACTG aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagatTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACTGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGGAAACTGgtaagctcttattccctgtttcaatagggttcattgagtggaactggctt Alignment from Spaln_aa2Genome ATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCT aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACTGTGAGAGGAATAGAGACCTgtgggatcctctgtgggaaactggtaagctcttattccctgtttcaatagggttcattgagtggaactggctt Alignment from Spaln_nt2Genome aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagatttggtggttgaagggctgaggtgtgtagttttatcaagagatctttgccataaatttctgctgctggctgactctaacactgtgagaggaatagagacctgtgggatcctctgtgggaaactggtaagctcttattccctgtttcaatagggttcattgagtggaactggctt Alignment from Pairagon ATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGAAAACTG aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACTGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGGAAACTGgtaagctcttattccctgtttcaatagggttcattgagtggaactggctt Alignment from Exonerate_protein2genome ATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGAAAACTG aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACTGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGGAAACTGgtaagctcttattccctgtttcaatagggttcattgagtggaactggctt Alignment from Exonerate_coding2genome ATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGAAAACTG aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACTGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGGAAACTGgtaagctcttattccctgtttcaatagggttcattgagtggaactggctt Alignment from GeneWise ATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACAGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGAAAACTG aggacaagatccgaggcttggttttagcaacccccccgtttctgttgcagATTTGGTGGTTGAAGGGCTGAGGTGTGTAGTTTTATCAAGAGATCTTTGCCATAAATTTCTGCTGCTGGCTGACTCTAACACTGTGAGAGGAATAGAGACCTGTGGGATCCTCTGTGGGAAACTGgtaagctcttattccctgtttcaatagggttcattgagtggaactggctt #### Stip1_ID1992_9 --> 0 - 1 Original Alignment GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAg gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGggtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc Alignment from CESAR GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAg gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGggtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc Alignment from Spaln_aa2Genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGGgtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc Alignment from Spaln_nt2Genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGGgtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc Alignment from Pairagon GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGGgtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc Alignment from Exonerate_protein2genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGGgtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc Alignment from Exonerate_coding2genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGGgtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc Alignment from GeneWise GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtttaaattactgtactaatgattttttaacacactcttatttttctcagGCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAATCCTGACTTGGCTTTAGAGGAGAAGAACAAGAGCAATGAATGCTTCCAGAAGGgtaagtcactgttcaggaacctctgttctgctgtgggcttcctggcctgc #### Stip1_ID1993_8 --> 1 - 0 Original Alignment aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac Alignment from CESAR aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac Alignment from Spaln_aa2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac Alignment from Spaln_nt2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac Alignment from Pairagon AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac Alignment from Exonerate_protein2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac Alignment from Exonerate_coding2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac Alignment from GeneWise AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG agtggtggatcttgcttctaactctgccaagtcatgtaaatattttttagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattatgtagccctgggtatcctaaaactctatagac #### Stip1_ID1995_6 --> 0 - 1 Original Alignment GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAg tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAggtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa Alignment from CESAR GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAg tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAggtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa Alignment from Spaln_aa2Genome GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAG tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAGgtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa Alignment from Spaln_nt2Genome GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAG tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAGgtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa Alignment from Pairagon GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAG tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAGgtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa Alignment from Exonerate_protein2genome GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAG tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAGgtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa Alignment from Exonerate_coding2genome GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAG tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAGgtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa Alignment from GeneWise GCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCCTGAAGCATTATGACAGAGCCAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAG tgcctgctgccgtatgggagtgaagcacctttccttttattctttgatagGCACTGAAAGAGAAGGAGCTGGGAAATGATGCCTACAAGAAGAAAGATTTTGACAAGGCCTTGAAGCATTATGACAGAGCTAAGGAACTGGACCCTACCAACATGACCTACATAACTAATCAAGCAGgtaaatcttagaaaccagaggtgagggaattgttaggcactcttctgaaa #### Stx3_ID3298_8 --> 0 - 0 Original Alignment ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgcccacggcatgtgggaaagcaggcacttcactgtgaactggggagcagg Alignment from CESAR ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgcccacggcatgtgggaaagcaggcacttcactgtgaactggggagcagg Alignment from Spaln_aa2Genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgcccacggcatgtgggaaagcaggcacttcactgtgaactggggagcagg Alignment from Spaln_nt2Genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgcccacggcatgtgggaaagcaggcacttcactgtgaactggggagcagg Alignment from Pairagon ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG----------- agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGGCCCACGGCATgtgggaaagcaggcacttcactgtgaactggggagcagg Alignment from Exonerate_protein2genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgcccacggcatgtgggaaagcaggcacttcactgtgaactggggagcagg Alignment from Exonerate_coding2genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAA agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAatcaggcccacggcatgtgggaaagcaggcacttcactgtgaactggggagcagg Alignment from GeneWise ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG--------------------------------- agtctgttactagggcggttgacagtcttttttatttcttcggattttagATCATCGACTCCCAGATTTACAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTTCATGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGGCCCACGGCATGTGGGAAAGCAGGCACTTCACTgtgaactggggagcagg #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCaggtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCaggtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc #### Stx5a_ID2337_9 --> 0 - 2 Original Alignment GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGag agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGaggtttggcattcttgccccatacagtgcagttctcttctccatctagggac Alignment from CESAR GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGag agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGaggtttggcattcttgccccatacagtgcagttctcttctccatctagggac Alignment from Spaln_aa2Genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAGgtttggcattcttgccccatacagtgcagttctcttctccatctagggac Alignment from Spaln_nt2Genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAGgtttggcattcttgccccatacagtgcagttctcttctccatctagggac Alignment from Pairagon GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAGgtttggcattcttgccccatacagtgcagttctcttctccatctagggac Alignment from Exonerate_protein2genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAGgtttggcattcttgccccatacagtgcagttctcttctccatctagggac Alignment from Exonerate_coding2genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAGgtttggcattcttgccccatacagtgcagttctcttctccatctagggac Alignment from GeneWise GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG agtgtcctaaaaacctaggccctagttcgcccatcccatcccttctatagGATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAGgtttggcattcttgccccatacagtgcagttctcttctccatctagggac #### Sufu_ID9887_2 --> 1 - 2 Original Alignment gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga ttttctgatttccaggtttatgttgacacgcttcttctctctccctccaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt Alignment from CESAR gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga ttttctgatttccaggtttatgttgacacgcttcttctctctccctccaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt Alignment from Spaln_aa2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttttctgatttccaggtttatgttgacacgcttcttctctctccctccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt Alignment from Spaln_nt2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttttctgatttccaggtttatgttgacacgcttcttctctctccctccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt Alignment from Pairagon GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttttctgatttccaggtttatgttgacacgcttcttctctctccctccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt Alignment from Exonerate_protein2genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttttctgatttccaggtttatgttgacacgcttcttctctctccctccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt Alignment from Exonerate_coding2genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttttctgatttccaggtttatgttgacacgcttcttctctctccctccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt Alignment from GeneWise GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttttctgatttccaggtttatgttgacacgcttcttctctctccctccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtgagagtctgccatctgcttttccttaacctgaagcctatttgtttagt #### Sufu_ID9896_4 --> 2 - 0 Original Alignment agAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagagAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc Alignment from CESAR agAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagagAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc Alignment from Spaln_aa2Genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagAGAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc Alignment from Spaln_nt2Genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagAGAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc Alignment from Pairagon AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagAGAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc Alignment from Exonerate_protein2genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagAGAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc Alignment from Exonerate_coding2genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagAGAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc Alignment from GeneWise AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG ggcagtctccaggcctggatccaactgctgccctttgactctgattgtagAGAACACCTTCTGTAGTGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGATGGAGGATCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTGACTTTCCTCCAGgtaaagtgccatcagaggcctcaaacagtttagccttgttggaaaagtcc #### Sufu_ID9914_11 --> 0 - 0 Original Alignment ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAgcaagtctatttcctttctcactgatagagggctcctatgtgtgtgtgtg Alignment from CESAR ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAgcaagtctatttcctttctcactgatagagggctcctatgtgtgtgtgtg Alignment from Spaln_aa2Genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAgcaagtctatttcctttctcactgatagagggctcctatgtgtgtgtgtg Alignment from Spaln_nt2Genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAgcaagtctatttcctttctcactgatagagggctcctatgtgtgtgtgtg Alignment from Pairagon ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAgcaagtctatttcctttctcactgatagagggctcctatgtgtgtgtgtg Alignment from Exonerate_protein2genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAgcaagtctatttcctttctcactgatagagggctcctatgtgtgtgtgtg Alignment from Exonerate_coding2genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAgcaagtctatttcctttctcactgatagagggctcctatgtgtgtgtgtg Alignment from GeneWise ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA--------------------------------------- caaaaaataataatcagaattaaaacccctgcttctttccccgtccccagATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGCTGGAGGACTTAGAAGATCTAACATCTCCAGAGGAAGCAAGTCTATTTCCTTTCTCACTGATAGAGGGCTCCTATgtgtgtgtgtg #### Suv420h1_ID142_4 --> 1 - 0 Original Alignment aTTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagaTTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac Alignment from CESAR aTTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagaTTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac Alignment from Spaln_aa2Genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac Alignment from Spaln_nt2Genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac Alignment from Pairagon ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac Alignment from Exonerate_protein2genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac Alignment from Exonerate_coding2genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac Alignment from GeneWise ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ttaaaagaattgtgatagatgactaaacctgtcctcttatctgatttcagATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATCGAACGCTTTAAGAAAGATGAACACTTAGAAAAAGCTTTCAAATGTTTGACTTCTGGCGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACATgtaggttaagtgcattaatgctactaacctatgtccagatacattgcaac #### Syt12_ID534_6 --> 2 - 0 Original Alignment acCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagacCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc Alignment from CESAR acCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagacCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc Alignment from Spaln_aa2Genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc Alignment from Spaln_nt2Genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc Alignment from Pairagon ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc Alignment from Exonerate_protein2genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc Alignment from Exonerate_coding2genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc Alignment from GeneWise ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccagagcagcgagggtcaccgataacagttttttatcttcttcagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGgtgagctggggactcacaggactgggccactgcaccactccagtgttgcc #### Syt12_ID537_3 --> 0 - 0 Original Alignment CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg Alignment from CESAR CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg Alignment from Spaln_aa2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg Alignment from Spaln_nt2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg Alignment from Pairagon CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg Alignment from Exonerate_protein2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg Alignment from Exonerate_coding2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg Alignment from GeneWise CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ggtgcctcagccccatatgacacttctcagtgtgtttatttttttttcagCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACCCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTCGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCAGCTGACTCTCTCAATTCCGTCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGCCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTTCACGTGGCAGTACTACACGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGgttggtggggtggggacagaggtgcactgggcttcctgaagctttcctgg #### Syt7_ID2816_4 --> 1 - 2 Original Alignment tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagtTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCctgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa Alignment from CESAR tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagtTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCctgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa Alignment from Spaln_aa2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagTTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCTgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa Alignment from Spaln_nt2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagTTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCTgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa Alignment from Pairagon TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagTTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCTgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa Alignment from Exonerate_protein2genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagTTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCTgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa Alignment from Exonerate_coding2genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagTTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCTgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa Alignment from GeneWise TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT ttctcttccaatgagatctcctttccctatcttctgtgtcttcctgccagTTTTGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGTCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCAGGCTCCAACCCCCGGGCTTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCAGCCGGCTCCAAGTACCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCTgtgagtcctccccgcctcctccacccagcatcttccccacagccccctaa #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg #### Taf5_ID10091_2 --> 2 - 2 Original Alignment ttGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGaa attattagatcattcattttcttaaaagaactactcctttctccctacagttGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGaagtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca Alignment from CESAR ttGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGaa attattagatcattcattttcttaaaagaactactcctttctccctacagttGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGaagtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca Alignment from Spaln_aa2Genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA attattagatcattcattttcttaaaagaactactcctttctccctacagTTGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAAgtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca Alignment from Spaln_nt2Genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA attattagatcattcattttcttaaaagaactactcctttctccctacagTTGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAAgtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca Alignment from Pairagon TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA attattagatcattcattttcttaaaagaactactcctttctccctacagTTGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAAgtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca Alignment from Exonerate_protein2genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA attattagatcattcattttcttaaaagaactactcctttctccctacagTTGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAAgtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca Alignment from Exonerate_coding2genome TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA attattagatcattcattttcttaaaagaactactcctttctccctacagTTGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAAgtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca Alignment from GeneWise TTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGAGACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAA attattagatcattcattttcttaaaagaactactcctttctccctacagTTGCAAGTGTAGCTGTCGAAGACCAGCCAGATGTCGGTGCAGTCTTGTCAGCTTACAACCAACAAGGAGACCCCACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATCGAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTGCATATGTACTTGGAGCTAGTTTATAATCAACATGAAAATGAAGCAAAATCATTCTTTGAGAAgtaagtgaatgttaatgtctttaccctgtttatgtatgtataagcacaca #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc #### Tbc1d10c_ID402_2 --> 1 - 0 Original Alignment gCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtaggCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc Alignment from CESAR gCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtaggCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc Alignment from Spaln_aa2Genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtagGCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc Alignment from Spaln_nt2Genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtagGCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc Alignment from Pairagon GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtagGCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc Alignment from Exonerate_protein2genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtagGCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc Alignment from Exonerate_coding2genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtagGCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc Alignment from GeneWise GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacgttttaatgtcattttctgtagGCTTTGTCAACCCTCTGCAGACCTAATCCGCCAGCGAGAGATGAAATGGGTCGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAGGAAGgtgatcaaaaagaggtgtacaaacactggttcctaaagttctcaatcccc #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATgtgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcca Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATgtgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcga Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcca Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcca Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcca Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcca Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcca Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccatcatgtccctaagtgtgattgatgtcacttgactttcagATCTGGAGCCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCTTAGGGGTCACACACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAATCATGTgtcagataagggttgtgtgtgtgggcagtctttgtgggtctagggtgcca #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGatgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGatgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATGTACTTCCTATAACCCTTCCTATGCAGCCAGGGCACCTGGCCAACTGTGC Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc #### Tcirg1_ID177_10 --> 2 - 0 Original Alignment ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagctCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa Alignment from CESAR ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagctCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa Alignment from Spaln_aa2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa Alignment from Spaln_nt2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa Alignment from Pairagon CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa Alignment from Exonerate_protein2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa Alignment from Exonerate_coding2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa Alignment from GeneWise CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tactcagtcttccctgcggacctcctgaattttactttctccccctacagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTCGGGCACGGACTGCTTATGTTTCTTTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgtgagtcccatccatgcatgacaagggagggaactagacaacctgctgaa #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg #### Tctn3_ID7994_7 --> 0 - 0 Original Alignment GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga Alignment from CESAR GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga Alignment from Spaln_aa2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga Alignment from Spaln_nt2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga Alignment from Pairagon GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga Alignment from Exonerate_protein2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga Alignment from Exonerate_coding2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga Alignment from GeneWise GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ttcatgagaggtgtacacacccccatgtttattttcctgctttttgacagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtgagctgctgtttatcaggaaaaacaatacctggctgctatctgtctga #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctaggtTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctaggtTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta #### Tctn3_ID7999_2 --> 2 - 2 Original Alignment ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagctTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAaggtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from CESAR ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagctTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAaggtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Spaln_aa2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Spaln_nt2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Pairagon CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Exonerate_protein2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from Exonerate_coding2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc Alignment from GeneWise CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgggggagtttcatcttgatctcatgtctcctcccttagCTTTACCGATCTGTGTCTGTGACCTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGACAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaatttgtggtgcccctccagtggaggagtgagagtgagtctcctgccc #### Tdrd1_ID12202_3 --> 0 - 1 Original Alignment AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTg catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTggtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat Alignment from CESAR AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTg catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTggtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat Alignment from Spaln_aa2Genome AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTGgtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat Alignment from Spaln_nt2Genome AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTGgtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat Alignment from Pairagon AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTGgtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat Alignment from Exonerate_protein2genome AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTGgtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat Alignment from Exonerate_coding2genome AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTGgtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat Alignment from GeneWise AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG catgcagtgcctgaagagaccttctaatattgctccgtgtattgcttcagAAACCCAGCAGTAACGTGACTCCAGAAAAATCAAAAAAATCCCACAAGTTGTTTGAGAATGCCTTATCTGTAAATAATCCAGCACTCTTTAACTCATTAGGCCCGCCCCTTCGATCAACGACCTGCCACCGCTGTGGCCTGTTTGgtgaggaagtttgcttttgatgtccacatgccaatacatccgaggagtat #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga Alignment from Exonerate_coding2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG agacttgggagccaggctgtgtcaagccgttgaatgctttcgtattacagGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGTGGGTGCTGAGAGGGTGATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGgtgaaagatttgtttcccacaagagatcccatggagataaaggtatggga #### Tdrd1_ID12207_8 --> 0 - 0 Original Alignment ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg Alignment from CESAR ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg Alignment from Spaln_aa2Genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg Alignment from Spaln_nt2Genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg Alignment from Pairagon ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg Alignment from Exonerate_protein2genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg Alignment from Exonerate_coding2genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg Alignment from GeneWise ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT taggattgtgagctgtgtttaaagcagaaattgttctctgttcctaaaagACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGAAACGAGGAGATGATCCCAATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGATTTGTTTCCTCCTTCTgtggggcctttctttttgaactcctgtcagtgtcttcgttgtcctcttcg #### Tdrd1_ID12208_9 --> 0 - 1 Original Alignment GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAggtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag Alignment from CESAR GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAggtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag Alignment from Spaln_aa2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAGgtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag Alignment from Spaln_nt2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAGgtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag Alignment from Pairagon GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAGgtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag Alignment from Exonerate_protein2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAGgtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag Alignment from Exonerate_coding2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAGgtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag Alignment from GeneWise GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG ttttcttttttttttcaatcctgtaaaaagttgtactactcctcgtccagGCCATAAAGTGCTGTGTGTCAGGTGTCATTCCCACTGCAGGTGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGACATCATAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTTTACAGAGTTCAGgtgagttgtgaacttccttttcacctttcctagttccatctgtctcacag #### Tdrd1_ID12210_11 --> 2 - 1 Original Alignment gtGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCc actgttttgttcctttccatgatgcccatattctttttatactcctctaggtGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCcgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact Alignment from CESAR gtGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCc actgttttgttcctttccatgatgcccatattctttttatactcctctaggtGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCcgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact Alignment from Spaln_aa2Genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actgttttgttcctttccatgatgcccatattctttttatactcctctagGTGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCCgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact Alignment from Spaln_nt2Genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actgttttgttcctttccatgatgcccatattctttttatactcctctagGTGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCCgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact Alignment from Pairagon GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actgttttgttcctttccatgatgcccatattctttttatactcctctagGTGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCCgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact Alignment from Exonerate_protein2genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actgttttgttcctttccatgatgcccatattctttttatactcctctagGTGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCCgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact Alignment from Exonerate_coding2genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actgttttgttcctttccatgatgcccatattctttttatactcctctagGTGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCCgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact Alignment from GeneWise GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actgttttgttcctttccatgatgcccatattctttttatactcctctagGTGCATTGGAGGATGTTGGAAGAGTGACAGTTGAGAGCAAAATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGTGTGGTTGCCCACATCCAGACACCAGAGGATTTCTTTTGCCAGCAGCTGCAGAGCGGCCgtaagtccattttcttagtcttgttttgcaaaaaagtgttccatgagact #### Tectb_ID11563_6 --> 1 - 2 Original Alignment gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg tctctatacacaagattgctcttagtgcagttgtctttttctctcaacaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGgggttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc Alignment from CESAR gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg tctctatacacaagattgctcttagtgcagttgtctttttctctcaacaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGgggttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc Alignment from Spaln_aa2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG tctctatacacaagattgctcttagtgcagttgtctttttctctcaacagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGGGgttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc Alignment from Spaln_nt2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG tctctatacacaagattgctcttagtgcagttgtctttttctctcaacagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGGGgttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc Alignment from Pairagon GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG tctctatacacaagattgctcttagtgcagttgtctttttctctcaacagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGGGgttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc Alignment from Exonerate_protein2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG tctctatacacaagattgctcttagtgcagttgtctttttctctcaacagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGGGgttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc Alignment from Exonerate_coding2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG tctctatacacaagattgctcttagtgcagttgtctttttctctcaacagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGGGgttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc Alignment from GeneWise GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG tctctatacacaagattgctcttagtgcagttgtctttttctctcaacagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTGATCAATAAGGGgttggcgtcaatctccagagttaaggcagagcagtgcatacagtgagtcc #### Tectb_ID11565_8 --> 0 - 1 Original Alignment AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGa gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGagtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca Alignment from CESAR AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGa gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGagtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca Alignment from Spaln_aa2Genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGAgtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca Alignment from Spaln_nt2Genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGAgtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca Alignment from Pairagon AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGAgtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca Alignment from Exonerate_protein2genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGAgtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca Alignment from Exonerate_coding2genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGAgtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca Alignment from GeneWise AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatattcattattcttttttctcttttttttcccctgcttttgtcttcagAACTGTGACAAACGGAAGCGCATGCTACGCGACCAGACAGGAGGTGTCCTAGTTGTGGAGTTGTCCCTGAGGAgtgagctgagtgccaatatgtgtgcccctcagctgtgttcacaggcacca #### Tectb_ID11566_9 --> 2 - 1 Original Alignment gcAGGGCATTTTCCGGCCTCTGTGACTTCTCAg ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcaggcAGGGCATTCTCTGGCCTCTGTGACTTCTCAggtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg Alignment from CESAR gcAGGGCATTTTCCGGCCTCTGTGACTTCTCAg ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcaggcAGGGCATTCTCTGGCCTCTGTGACTTCTCAggtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg Alignment from Spaln_aa2Genome GCAGGGCATTTTCCGGCCTCTGTGACTTCTCAG ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcagGCAGGGCATTCTCTGGCCTCTGTGACTTCTCAGgtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg Alignment from Spaln_nt2Genome GCAGGGCATTTTCCGGCCTCTGTGACTTCTCAG ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcagGCAGGGCATTCTCTGGCCTCTGTGACTTCTCAGgtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg Alignment from Pairagon GCAGGGCATTTTCCGGCCTCTGTGACTTCTCAG ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcagGCAGGGCATTCTCTGGCCTCTGTGACTTCTCAGgtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg Alignment from Exonerate_protein2genome GCAGGGCATTTTCCGGCCTCTGTGACTTCTCAG ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcagGCAGGGCATTCTCTGGCCTCTGTGACTTCTCAGgtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg Alignment from Exonerate_coding2genome GCAGGGCATTTTCCGGCCTCTGTGACTTCTCAG ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcagGCAGGGCATTCTCTGGCCTCTGTGACTTCTCAGgtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg Alignment from GeneWise ctatcatgccccttttcaacctccacacccttctcttgtcctcccctcaggcagggcattctctggcctctgtgacttctcaggtaacgcaaagagccagtacttagaagtgtcatggtgtatcgcttttgcg #### Tex40_ID1869_3 --> 2 - 0 Original Alignment caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagcaTCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca Alignment from CESAR caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagcaTCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca Alignment from Spaln_aa2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagCATCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca Alignment from Spaln_nt2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagCATCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca Alignment from Pairagon CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagCATCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca Alignment from Exonerate_protein2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagCATCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca Alignment from Exonerate_coding2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagCATCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca Alignment from GeneWise CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacccaagagcctgaccaagactactgagagtgaggtcttttccagCATCATCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGGgtgacaggatactactggggagactactggggttgagttattgggcagca #### Tex40_ID1870_2 --> 0 - 1 Original Alignment CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAg cctccatatccctgaattccttggctacatccccttgttctggtctccagCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAggtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag Alignment from CESAR CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAg cctccatatccctgaattccttggctacatccccttgttctggtctccagCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAggtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag Alignment from Spaln_aa2Genome CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG cctccatatccctgaattccttggctacatccccttgttctggtctccagCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAGgtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag Alignment from Spaln_nt2Genome CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG cctccatatccctgaattccttggctacatccccttgttctggtctccagCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAGgtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag Alignment from Pairagon CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG cctccatatccctgaattccttggctacatccccttgttctggtctccagCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAGgtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag Alignment from Exonerate_protein2genome GAAAGCGTCAAACCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG cctccatatccctgaattccttggctacatccccttgtTCTGGTCTCCAGCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAGgtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag Alignment from Exonerate_coding2genome GAAAGCGTCAAACCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG cctccatatccctgaattccttggctacatccccttgtTCTGGTCTCCAGCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAGgtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag Alignment from GeneWise GAGGAAAGCGTCAAACCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG ccatatccctgaattccttggctacatccccttgt---TCTGGTCTCCAGCCGGTGCCCAAACATGCAAACCATCGCCGTAGCTCAGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACAGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCATGAAGAATCTGAGACCTCCTTAGgtgaggctagcttcactgaggcaatgggtgtaccataacggtggggctag #### Tjp2_ID5270_17 --> 0 - 1 Original Alignment GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAggtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct Alignment from CESAR GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAggtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct Alignment from Spaln_aa2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct Alignment from Spaln_nt2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct Alignment from Pairagon GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct Alignment from Exonerate_protein2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct Alignment from Exonerate_coding2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct Alignment from GeneWise GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG atgcctaactttgatgtcaccatgcgcctttttttcctttgccttctcagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGACTCCAGACAAGGAGTTAAAACGATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtgagcgaagttcgaaaaagacccatgctcagaatgagcaatcaggagct #### Tjp2_ID5271_16 --> 2 - 0 Original Alignment aaACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagaaACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg Alignment from CESAR aaACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagaaACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg Alignment from Spaln_aa2Genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagAAACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg Alignment from Spaln_nt2Genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagAAACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg Alignment from Pairagon AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagAAACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg Alignment from Exonerate_protein2genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagAAACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg Alignment from Exonerate_coding2genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagAAACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg Alignment from GeneWise AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gatccacctgccttctagcaatattactatatgtgtctgctcctaaacagAAACAGAACCCAAAGATGCCGGATCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAGgtgagtaagctcctcacaagctcatgttgtcaacagctggaccgtggttg #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagcTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAggtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagcTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAggtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagCTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAGgtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagCTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAGgtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagCTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAGgtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagCTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAGgtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc Alignment from Exonerate_coding2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagCTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAGgtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gggtcacaactgtgttatctcctgagaccctgaccctcattcttccgcagCTCAAGAGAGGAGACCTCAGGTAGACTATCCAGGATGGGTGCCACTCCCACGCCATTTAAGTCCACAGGGGACATCACAGCTGCAGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAGgtaagatgttaggccattcttttgtatgtgtgttacacacaagctggttc #### Tjp2_ID5283_4 --> 1 - 0 Original Alignment aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagaGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg Alignment from CESAR aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagaGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg Alignment from Spaln_aa2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagAGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg Alignment from Spaln_nt2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagAGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg Alignment from Pairagon AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagAGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg Alignment from Exonerate_protein2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagAGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg Alignment from Exonerate_coding2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagAGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg Alignment from GeneWise AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC gtttggctctttgggttcagaatgactgccccctgtttatttccatccagAGAAAATGACAGGGTGGTCATGGTCAACGGCACCCCCATGGAAGATTTGCTCCACTCGTTTGCTGTTCAGCAGCTCAGGAAAAGTGGGAAGATAGCAGCCATTgtatgtcctggttgagattacatttggtgcagtcggtacacgcttgtatg #### Tjp2_ID5285_2 --> 0 - 0 Original Alignment GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt Alignment from CESAR GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt Alignment from Spaln_aa2Genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt Alignment from Spaln_nt2Genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt Alignment from Pairagon GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt Alignment from Exonerate_protein2genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt Alignment from Exonerate_coding2genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt Alignment from GeneWise GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG tctggcattaagtgttctgtgtcactcattttctaactttttcttggcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTGCAGAAGgtgacgtcttgcatcctcttcctcgctctctgtttcgctgttcatgggtt #### Tle4_ID3621_16 --> 0 - 2 Original Alignment AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGaggtaagatagctgaatttacttctgtatggagagggagagctaatttacca Alignment from CESAR AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGaggtaagatagctgaatttacttctgtatggagagggagagctaatttacca Alignment from Spaln_aa2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGAGgtaagatagctgaatttacttctgtatggagagggagagctaatttacca Alignment from Spaln_nt2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGAGgtaagatagctgaatttacttctgtatggagagggagagctaatttacca Alignment from Pairagon AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGAGgtaagatagctgaatttacttctgtatggagagggagagctaatttacca Alignment from Exonerate_protein2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGAGgtaagatagctgaatttacttctgtatggagagggagagctaatttacca Alignment from Exonerate_coding2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGAGgtaagatagctgaatttacttctgtatggagagggagagctaatttacca Alignment from GeneWise AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG cgcttccgttttcctcctgagttgtctcctcctttcttattgtctctcagAACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAAGCCAGCACACTGTCAATCTGGGACCTGGCAGCACCAACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATCGCAGTATGGGATCTGCACAACCAGACTCTGGTGAGgtaagatagctgaatttacttctgtatggagagggagagctaatttacca #### Tle4_ID3623_15 --> 1 - 0 Original Alignment aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagaGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct Alignment from CESAR aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagaGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct Alignment from Spaln_aa2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagAGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct Alignment from Spaln_nt2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagAGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct Alignment from Pairagon AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagAGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct Alignment from Exonerate_protein2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagAGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct Alignment from Exonerate_coding2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagAGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct Alignment from GeneWise AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG ctgctgtttttcctttatgttccctgctttctgctttcgtttcttcttagAGCATACTCCTTTCATGTCAGTGCTGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCCGATGCCCTCATTGGCCCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTATACACAGGTGGCAAAGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTGTCCCAGCTAGCCTGTCTGgtaagctagcagggatgataaagcccccagttgtgaaaatcagcagtcct #### Tle4_ID3628_11 --> 0 - 0 Original Alignment GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt Alignment from CESAR GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt Alignment from Spaln_aa2Genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt Alignment from Spaln_nt2Genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt Alignment from Pairagon GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt Alignment from Exonerate_protein2genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt Alignment from Exonerate_coding2genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt Alignment from GeneWise GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT atcttcgaaaaggcagcgcagttgacacgccgttatcattgttttctcagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCTGCGTCTGTTGCATCTTCCAGCAGTACGCCTTCCTCCAAATCCAAAGAGCTTAGCCTTgtgatttgctccctaaccagaactgcatgcttagggttgggtcaccctgt #### Tll2_ID8103_16 --> 0 - 1 Original Alignment GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAg aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAggtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct Alignment from CESAR GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAg aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAggtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct Alignment from Spaln_aa2Genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct Alignment from Spaln_nt2Genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct Alignment from Pairagon GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct Alignment from Exonerate_protein2genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct Alignment from Exonerate_coding2genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct Alignment from GeneWise GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aaggagtaattgaggggtagcatattgcaatggctctaatctgtcaccagGTCTGTAAGTATGACTTCGTAGAAGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCAGAGGTCATCACATCACAGAGCAACAATATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtaagtggggtgggcctgcagaggcccatagggctcctggcccctgggct #### Tll2_ID8107_13 --> 0 - 1 Original Alignment ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGggtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc Alignment from CESAR ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGggtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc Alignment from Spaln_aa2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc Alignment from Spaln_nt2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc Alignment from Pairagon ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc Alignment from Exonerate_protein2genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc Alignment from Exonerate_coding2genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc Alignment from GeneWise ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG gaagccaagcctgccagtgtccccaatgttttttttctttttaatggaagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGATGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtaagtcttaccagtccattcatgtgtttattcaatggaagtactattgc #### Tll2_ID8111_10 --> 0 - 1 Original Alignment ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGggtatgtgaacatcagccttcagagaattggggattaaagtgtgttctccc Alignment from CESAR ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGggtatgtgaacatcagccttcagagaattggggattaaagtgtgttctccc Alignment from Spaln_aa2Genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtatgtgaacatcagccttcagagaattggggattaaagtgtgttctccc Alignment from Spaln_nt2Genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtatgtgaacatcagccttcagagaattggggattaaagtgtgttctccc Alignment from Pairagon ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtatgtgaacatcagccttcagagaattggggattaaagtgtgttctccc Alignment from Exonerate_protein2genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtatgtgaacatcagccttcagagaattggggattaaagtgtgttctccc Alignment from Exonerate_coding2genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtatgtgaacatcagccttcagagaattggggattaaagtgtgttctccc Alignment from GeneWise ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGGGGAG cagtcttcagggtttgttgttcaaacctttttctcctaaatgaacattagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGGTATgtgaacatcagccttcagagaattggggattaaagtgtgttctccc #### Tll2_ID8125_3 --> 2 - 1 Original Alignment gaGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGg tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacaggtGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGggtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt Alignment from CESAR gaGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGg tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacaggtGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGggtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt Alignment from Spaln_aa2Genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGG tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacagGTGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGGgtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt Alignment from Spaln_nt2Genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGG tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacagGTGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGGgtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt Alignment from Pairagon GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGG tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacagGTGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGGgtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt Alignment from Exonerate_protein2genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGG tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacagGTGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGGgtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt Alignment from Exonerate_coding2genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGG tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacagGTGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGGgtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt Alignment from GeneWise GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGG tccgtgccactgaaaggtctgtctttacagtaacatatatttcttgacagGTGGCCTTGAGGAGACATCTGCAAGGTGGCTAAACGATACAGCCTCTAACGCCAGCATCCAGGCACCAAGAAAGGgtaagatacgggaggccatacccagtcttcaaggatcttttgttctattt #### Tlx1_ID9330_2 --> 2 - 2 Original Alignment gtCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGag gtctcccactctagaggccctctcacccctttgctgtttctttttgataggtCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGaggtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc Alignment from CESAR gtCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGag gtctcccactctagaggccctctcacccctttgctgtttctttttgataggtCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGaggtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc Alignment from Spaln_aa2Genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctctcacccctttgctgtttctttttgatagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGAGgtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc Alignment from Spaln_nt2Genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctctcacccctttgctgtttctttttgatagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGAGgtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc Alignment from Pairagon GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctctcacccctttgctgtttctttttgatagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGAGgtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc Alignment from Exonerate_protein2genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctctcacccctttgctgtttctttttgatagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGAGgtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc Alignment from Exonerate_coding2genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctctcacccctttgctgtttctttttgatagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGAGgtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc Alignment from GeneWise GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctctcacccctttgctgtttctttttgatagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGTGCTCGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTCGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAATGGAGgtgaggtcatgaggcggatccagggctgaggagggggcttcccctccctc #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa #### Tm7sf2_ID1414_6 --> 0 - 0 Original Alignment GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaaa Alignment from CESAR GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaat Alignment from Spaln_aa2Genome GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaaa Alignment from Spaln_nt2Genome GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaaa Alignment from Pairagon GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaaa Alignment from Exonerate_protein2genome GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaaa Alignment from Exonerate_coding2genome GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaaa Alignment from GeneWise GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG ctatccaggtgctccacctcagacaatgctgacgtgtggttcctgtgcagGTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTCCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAACGGCTTCCAGCTGTTGTATGTGGGTGATGCCCTCTGGTATGAGgtaagcaggcaaggaggcgatcttgaggacatcaactggactaacccaaa #### Tm7sf2_ID1415_5 --> 2 - 0 Original Alignment gaAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcataggaAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtagtgtgacatgctggacttgattctgctggacttgcgccatgagaaga Alignment from CESAR gaAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcataggaAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtagtgtgacatgctggacttgattctgctggacttgcgccatgagaaga Alignment from Spaln_aa2Genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcatagGAAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtagtgtgacatgctggacttgattctgctggacttgcgccatgagaaga Alignment from Spaln_nt2Genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcatagGAAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtagtgtgacatgctggacttgattctgctggacttgcgccatgagaaga Alignment from Pairagon GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcatagGAAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtagtgtgacatgctggacttgattctgctggacttgcgccatgagaaga Alignment from Exonerate_protein2genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcatagGAAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtagtgtgacatgctggacttgattctgctggacttgcgccatgagaaga Alignment from Exonerate_coding2genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcatagGAAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtagtgtgacatgctggacttgattctgctggacttgcgccatgagaaga Alignment from GeneWise GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGGTT ggggggatgcatgcatccctggtatgctgggtatctcttatgtttcatagGAAATTCCATGTATGACTTCTTTCTTGGACGGGAGTTGAACCCCCACCTTGGTTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGGTAgtgtgacatgctggacttgattctgctggacttgcgccatgagaaga #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATggtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATggtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from GeneWise GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc #### Tm9sf3_ID8136_14 --> 1 - 1 Original Alignment gATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTg caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcataggATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTggtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac Alignment from CESAR gATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTg caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcataggATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTggtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac Alignment from Spaln_aa2Genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcatagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac Alignment from Spaln_nt2Genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcatagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac Alignment from Pairagon GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcatagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac Alignment from Exonerate_protein2genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcatagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac Alignment from Exonerate_coding2genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcatagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac Alignment from GeneWise GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgttgagcgttctttcctgatctcatagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtaacaactttctgctcaaggccaacaaatctgagtttcatcactgggac #### Tm9sf3_ID8143_7 --> 0 - 2 Original Alignment GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAga ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAgagtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt Alignment from CESAR GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAga ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAgagtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt Alignment from Spaln_aa2Genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt Alignment from Spaln_nt2Genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt Alignment from Pairagon GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt Alignment from Exonerate_protein2genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt Alignment from Exonerate_coding2genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt Alignment from GeneWise GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctacgggtgctaacatacccagatattctcttctctgtagGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCGTCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTCGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctaccggttgggtataaatagtttcttt #### Tm9sf3_ID8147_3 --> 2 - 1 Original Alignment atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagatGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGggtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt Alignment from CESAR atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagatGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGggtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt Alignment from Spaln_aa2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt Alignment from Spaln_nt2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt Alignment from Pairagon ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt Alignment from Exonerate_protein2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt Alignment from Exonerate_coding2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt Alignment from GeneWise ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGG- accttatgtgttgcaaatccatgggttattgttttccaattgtgtttcagATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagtatccttggttacaaagtccttggttgcaaagtaagatatcaagt #### Tmc1_ID4834_9 --> 0 - 2 Original Alignment GGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAgc tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAgcgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg Alignment from CESAR GGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAgc tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAgcgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg Alignment from Spaln_aa2Genome TGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAG tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAGCgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg Alignment from Spaln_nt2Genome GGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAGC tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAGCgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg Alignment from Pairagon GGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAGC tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAGCgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg Alignment from Exonerate_protein2genome GGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAGC tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAGCgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg Alignment from Exonerate_coding2genome GGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAGC tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAGCgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg Alignment from GeneWise GGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTACGACAATAAACGCACGATCGGATGGCTGAATTTCCGGCTACCTCTTTCCTACTTCCTGGTGGGGATTATGTGCATTGGATACAGCTTCCTGGTTGTCCTCAAAGC tgtgccactctgcacaacatctgttgaggactcgttgctgtcccccacagGGCCTGGCGCAGTACTCTGTCCTCTTTTATGGCTATTATGACAATAAACGCACAATCGGATGGTTGAATTTCCGGCTACCGCTTTCCTATTTCCTGGTGGGGATTATGTGCATTGGATATAGCTTCCTGGTTGTCCTCAAAGCgtatgtttttatctaatttatggaatcaattcaaatcattttgacatctg #### Tmc1_ID4835_8 --> 0 - 0 Original Alignment TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg Alignment from CESAR TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg Alignment from Spaln_aa2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg Alignment from Spaln_nt2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg Alignment from Pairagon TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg Alignment from Exonerate_protein2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg Alignment from Exonerate_coding2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg Alignment from GeneWise TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagggctcaggttctgttgactactttcttcctctgtgttccagTACCTCTGGGGTTTACCATATGGCAGCTTACCTAGAAAAACAGTCCCAAGAGCTGAAGAAGCTTCTGCTCCCAACTTTGGTGTGTTGTATGATTTCAATgttagttcgccacacagctgtttgcagtggaccttcttgttgtgatgtgg #### Tmem109_ID3037_2 --> 0 - 1 Original Alignment ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATg ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATggtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc Alignment from CESAR ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATg ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATggtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc Alignment from Spaln_aa2Genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATGgtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc Alignment from Spaln_nt2Genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATGgtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc Alignment from Pairagon ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATGgtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc Alignment from Exonerate_protein2genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATGgtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc Alignment from Exonerate_coding2genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATGgtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc Alignment from GeneWise ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ggcaagaagagatgagcctcctgcatgacctgagctgactccttacctagACCCTGTTACAGGTGATGTGGGCCATCTCATCAGCTATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATGgtaagtagcaggaatgagagatagctagcagtggtgaccttgctggtagc #### Tmem180_ID9860_2 --> 0 - 2 Original Alignment ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCcg atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCcggtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc Alignment from CESAR ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCcg atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCcggtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc Alignment from Spaln_aa2Genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCGgtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc Alignment from Spaln_nt2Genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCGgtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc Alignment from Pairagon ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCGgtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc Alignment from Exonerate_protein2genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCGgtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc Alignment from Exonerate_coding2genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCGgtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc Alignment from GeneWise ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG atgttggggagccttgtacaccccacctttcccacaagcaaccatctcagACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCGgtgagtcgtaggggatggtacatcactgcacccgtctgactctgatgatc #### Tmem2_ID4938_2 --> 2 - 1 Original Alignment agAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAg cacttcattcattggcttgtggtctatacttccccctcctcccaccatagacAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAggtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg Alignment from CESAR agAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAg cacttcattcattggcttgtggtctatacttccccctcctcccaccatagacAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAggtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg Alignment from Spaln_aa2Genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cacttcattcattggcttgtggtctatacttccccctcctcccaccatagACAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAGgtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg Alignment from Spaln_nt2Genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cacttcattcattggcttgtggtctatacttccccctcctcccaccatagACAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAGgtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg Alignment from Pairagon AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cacttcattcattggcttgtggtctatacttccccctcctcccaccatagACAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAGgtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg Alignment from Exonerate_protein2genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cacttcattcattggcttgtggtctatacttccccctcctcccaccatagACAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAGgtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg Alignment from Exonerate_coding2genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cacttcattcattggcttgtggtctatacttccccctcctcccaccatagACAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAGgtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg Alignment from GeneWise AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cacttcattcattggcttgtggtctatacttccccctcctcccaccatagACAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCAGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAGgtgggtagcagtccttgtctctgggtgccacatggatgctctgtaatgtg #### Tmem2_ID4939_3 --> 2 - 2 Original Alignment gaCTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACag acatcatggggccaggaagctgctgggatttttttaatgcttccttgcaggaCTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACaggtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc Alignment from CESAR gaCTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACag acatcatggggccaggaagctgctgggatttttttaatgcttccttgcaggaCTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACaggtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc Alignment from Spaln_aa2Genome GACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAG acatcatggggccaggaagctgctgggatttttttaatgcttccttgcagGACTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACAGgtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc Alignment from Spaln_nt2Genome GACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAG acatcatggggccaggaagctgctgggatttttttaatgcttccttgcagGACTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACAGgtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc Alignment from Pairagon GACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAG acatcatggggccaggaagctgctgggatttttttaatgcttccttgcagGACTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACAGgtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc Alignment from Exonerate_protein2genome GACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAG acatcatggggccaggaagctgctgggatttttttaatgcttccttgcagGACTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACAGgtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc Alignment from Exonerate_coding2genome GACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAG acatcatggggccaggaagctgctgggatttttttaatgcttccttgcagGACTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACAGgtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc Alignment from GeneWise GACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTGGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACGATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTCATTGATCAAGACACAGCCAGAGTTTTAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAG acatcatggggccaggaagctgctgggatttttttaatgcttccttgcagGACTGCTTGTGTTTGGGGATGATAAAGATGGCTCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTGGGGCACTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGTTGAGGCTGGCGGGACACTGGAGTTACACGGGGCACAGAGGACATCATGGACAATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGGTCTTATGCCTTCGAGAAGGACTTTTCCCGGGGCCTTAATGTGAGGGTTATTGATCAAGACACAGCCAGAGTTTTAGAGAACGAAAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCTGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGGTTACAGgtaggtagactttgttcttcacctccagctctgtgttagagcctgtatcc #### Tmem2_ID4946_8 --> 0 - 2 Original Alignment ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCat actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCatgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg Alignment from CESAR ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCat actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCatgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg Alignment from Spaln_aa2Genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCATgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg Alignment from Spaln_nt2Genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCATgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg Alignment from Pairagon ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCATgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg Alignment from Exonerate_protein2genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCATgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg Alignment from Exonerate_coding2genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCATgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg Alignment from GeneWise ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT actccgattggccttgtgactagtgacttctactttttctctttcttcagATCAAAGACACCATTGGCTTCGACACACTAGGACATTGTGTCTTCTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTTTCATAACTTGGGGCTTCTTACCCAGCCAGGCACTCTCCTCCCAACAGACAGGAACAGCTCCATGTGCACTATCATGCGTGATGGAGTGTTTGGAAACTATATCCCTGTGCCCACCACAGACTGCATgtaagaaatttttgtggacagggtattgtatagtgatgaaggccttaggg #### Tmem2_ID4963_20 --> 0 - 0 Original Alignment ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga Alignment from CESAR ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga Alignment from Spaln_aa2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga Alignment from Spaln_nt2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga Alignment from Pairagon ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga Alignment from Exonerate_protein2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga Alignment from Exonerate_coding2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga Alignment from GeneWise ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacagttgccttcaaagacatgtggcctttttctttagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCgtgggtacagtctggtacgcccccagtcttttgggggttgctgtaagcga #### Tmem2_ID4964_21 --> 0 - 2 Original Alignment GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAaggtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc Alignment from CESAR GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAaggtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc Alignment from Spaln_aa2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAAGgtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc Alignment from Spaln_nt2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAAGgtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc Alignment from Pairagon GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAAGgtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc Alignment from Exonerate_protein2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAAGgtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc Alignment from Exonerate_coding2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAAGgtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc Alignment from GeneWise GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gggatgttcctaaatagagatgacatcacttccaactttttcttcaccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAACGAATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTCAAGGCTAGCATCCCCCCAAGgtgagtcagcttgccctgaaccagagaagaactacctcaagaaatgactc #### Tnks2_ID7182_3 --> 2 - 1 Original Alignment tgCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTg gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagttCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTggtagtgcgtatgctctttggttatttcagtgttttttgtttggtttgggt Alignment from CESAR tgCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTg gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagttCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTggtagtgcgtatgctctttggttatttcagtgttttttgtttggtttgggt Alignment from Spaln_aa2Genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagTTCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTGgtagtgcgtatgctctttggttatttcagtgttttttgtttggtttgggt Alignment from Spaln_nt2Genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagTTCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTGgtagtgcgtatgctctttggttatttcagtgttttttgtttggtttgggt Alignment from Pairagon TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagTTCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTGgtagtgcgtatgctctttggttatttcagtgttttttgtttggtttgggt Alignment from Exonerate_protein2genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagTTCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTGgtagtgcgtatgctctttggttatttcagtgttttttgtttggtttgggt Alignment from Exonerate_coding2genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagTTCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTGgtagtgcgtatgctctttggttatttcagtgttttttgtttggtttgggt Alignment from GeneWise TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTGGTGAC---TATAAGAAAGA gcagattgctacggtcaccattttaaaactattcttgtctgatgttctagTTCTTTTACAGCATGGAGCTAAGCCAACCATCCGAAATACAGATGGAAGGAGATCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTAACTGGTAGTGCGTATGCTCTTTGgttatttcagtgttttttgtttggtttgggt #### Tnks2_ID7190_11 --> 1 - 0 Original Alignment aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagaTTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga Alignment from CESAR aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagaTTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga Alignment from Spaln_aa2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagATTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga Alignment from Spaln_nt2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagATTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga Alignment from Pairagon ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagATTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga Alignment from Exonerate_protein2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagATTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga Alignment from Exonerate_coding2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagATTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga Alignment from GeneWise ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tttttgcacagaaaacatacttactgcattttttttttttttttccctagATTCTTGACTCCTCTGCACGTGGCTTCTGAGAATGCTCACAATGATGTTGTTGAAGTAGTAGTGAAACATGAAGCAAAGgtaggtcccatttctggtcattttcggtaatccagtgagttaatctctga #### Tnks2_ID7194_15 --> 1 - 0 Original Alignment aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tgtttggtcagtataattactgagattacccagcttttctcccactgcagaGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAGgtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga Alignment from CESAR aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tgtttggtcagtataattactgagattacccagcttttctcccactgcagaGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAGgtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga Alignment from Spaln_aa2Genome tgtttggtcagtataattactgagattacccagcttttctcccactgcagaggtcttgtacctttacacaatgcatgttcttatggacactatgaagttgcagaacttcttgtcaagcatggagcagtagtcaatgtcgctgacttgtggaagttcacacctttacatgaagctgcagcaaaaggaaaatatgaaatatgcaaacttctactccaggtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga Alignment from Spaln_nt2Genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tgtttggtcagtataattactgagattacccagcttttctcccactgcagAGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAGgtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga Alignment from Pairagon AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tgtttggtcagtataattactgagattacccagcttttctcccactgcagAGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAGgtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga Alignment from Exonerate_protein2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tgtttggtcagtataattactgagattacccagcttttctcccactgcagAGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAGgtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga Alignment from Exonerate_coding2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tgtttggtcagtataattactgagattacccagcttttctcccactgcagAGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAGgtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga Alignment from GeneWise AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tgtttggtcagtataattactgagattacccagcttttctcccactgcagAGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAGgtagagttaagtactcactatggacagtgcagttgcctaaagtgcccaga #### Tnks2_ID7205_26 --> 1 - 0 Original Alignment gCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAG tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctaggCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga Alignment from CESAR gCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAG tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctaggCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga Alignment from Spaln_aa2Genome TACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAGATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAA tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctagGCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga Alignment from Spaln_nt2Genome GCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAG tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctagGCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga Alignment from Pairagon GCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAG tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctagGCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga Alignment from Exonerate_protein2genome GCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAG tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctagGCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga Alignment from Exonerate_coding2genome GCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAG tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctagGCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga Alignment from GeneWise GCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAG tctttgctgtgttctgtgtccaaggcaactgactcctccttctctcctagGCAGCTGCTGTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCCGGCCATCACTCAGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAGGAGAACAGgtaacccacttacatttgtttgtctttaacagtgaatagctctaacatga #### Trim8_ID9935_4 --> 0 - 2 Original Alignment AACACCAAGTCTGTGAAAATCCTAATGGACag gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACaggtaagatgagagccctcagtcctccagaacacatctgagggagggcagag Alignment from CESAR AACACCAAGTCTGTGAAAATCCTAATGGACag gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACaggtaagatgagagccctcagtcctccagaacacatctgagggagggcagag Alignment from Spaln_aa2Genome AACACCAAGTCTGTGAAAATCCTAATGGACAG gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtaagatgagagccctcagtcctccagaacacatctgagggagggcagag Alignment from Spaln_nt2Genome AACACCAAGTCTGTGAAAATCCTAATGGACAG gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtaagatgagagccctcagtcctccagaacacatctgagggagggcagag Alignment from Pairagon AACACCAAGTCTGTGAAAATCCTAATGGACAG gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtaagatgagagccctcagtcctccagaacacatctgagggagggcagag Alignment from Exonerate_protein2genome AACACCAAGTCTGTGAAAATCCTAATGGACAG gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtaagatgagagccctcagtcctccagaacacatctgagggagggcagag Alignment from Exonerate_coding2genome AACACCAAGTCTGTGAAAATCCTAATGGACAG gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtaagatgagagccctcagtcctccagaacacatctgagggagggcagag Alignment from GeneWise AACACCAAGTCTGTGAAAATCCTAATGGACAG gttctgccatgcctttcccactgactgatggtgtgtcatatattttccagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtaagatgagagccctcagtcctccagaacacatctgagggagggcagag #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg atgggtgacttgcccccctcacagctgacacctctgcctattcttcccaggACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAggtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg atgggtgacttgcccccctcacagctgacacctctgcctattcttcccaggACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAggtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from GeneWise AACACCAAGTCTGTGAAAATCCTAATGGACAGGACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG gacttgcccccctcacagCTGACACCTCTGCCT------ATTCTTCCCAGGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac #### Trpm3_ID5036_3 --> 1 - 0 Original Alignment gTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG atgttagtgatggcagacaagagagctcgtgcctcctttatttcacttaggTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGGAGTGGTCAATCAGCAAACACACTCAGCTTAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGTCATTCCAACAAAGCTATGgtaggttgaaagacagttactcattcccagacatagtctcacatcctgta Alignment from CESAR gTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG atgttagtgatggcagacaagagagctcgtgcctcctttatttcacttaggTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGGAGTGGTCAATCAGCAAACACACTCAGCTTAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGTCATTCCAACAAAGCTATGgtaggttgaaagacagttactcattcccagacatagtctcacatcctgta Alignment from Spaln_aa2Genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG atgttagtgatggcagacaagagagctcgtgcctcctttatttcacttagGTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGGAGTGGTCAATCAGCAAACACACTCAGCTTAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGTCATTCCAACAAAGCTATGgtaggttgaaagacagttactcattcccagacatagtctcacatcctgta Alignment from Spaln_nt2Genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG atgttagtgatggcagacaagagagctcgtgcctcctttatttcacttagGTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGGAGTGGTCAATCAGCAAACACACTCAGCTTAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGTCATTCCAACAAAGCTATGgtaggttgaaagacagttactcattcccagacatagtctcacatcctgta Alignment from Pairagon GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG atgttagtgatggcagacaagagagctcgtgcctcctttatttcacttagGTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGGAGTGGTCAATCAGCAAACACACTCAGCTTAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGTCATTCCAACAAAGCTATGgtaggttgaaagacagttactcattcccagacatagtctcacatcctgta Alignment from Exonerate_protein2genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG atgttagtgatggcagacaagagagctcgtgcctcctttatttcacttagGTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGGAGTGGTCAATCAGCAAACACACTCAGCTTAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGTCATTCCAACAAAGCTATGgtaggttgaaagacagttactcattcccagacatagtctcacatcctgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG atgttagtgatggcagacaagagagctcgtgcctcctttatttcacttagGTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGGAGTGGTCAATCAGCAAACACACTCAGCTTAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGTCATTCCAACAAAGCTATGgtaggttgaaagacagttactcattcccagacatagtctcacatcctgta #### Trpm3_ID5042_7 --> 2 - 2 Original Alignment gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg cattctgtttttttctctttttttccttttcctgttccatcccataacaggaATTGGTCAAGGGGTTCCAGTGGTGGCTCTTATCGTGGAAGGAGGACCCAATGTTATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGCAGTGGATGGGCATCCGACATCCTGGCATTTGGGCATGAATATTCAGAAGAAGGTgggtgagtcaatgccaggtcctgcaggagacaagctgtggttaaaccttcga Alignment from CESAR gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg cattctgtttttttctctttttttccttttcctgttccatcccataacaggaATTGGTCAAGGGGTTCCAGTGGTGGCTCTTATCGTGGAAGGAGGACCCAATGTTATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGCAGTGGATGGGCATCCGACATCCTGGCATTTGGGCATGAATATTCAGAAGAAGGTgggtgagtcaatgccaggtcctgcaggagacaagctgtggttaaaccttcga Alignment from Spaln_aa2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgtttttttctctttttttccttttcctgttccatcccataacagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTATCGTGGAAGGAGGACCCAATGTTATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGCAGTGGATGGGCATCCGACATCCTGGCATTTGGGCATGAATATTCAGAAGAAGGTGGgtgagtcaatgccaggtcctgcaggagacaagctgtggttaaaccttcga Alignment from Spaln_nt2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgtttttttctctttttttccttttcctgttccatcccataacagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTATCGTGGAAGGAGGACCCAATGTTATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGCAGTGGATGGGCATCCGACATCCTGGCATTTGGGCATGAATATTCAGAAGAAGGTGGgtgagtcaatgccaggtcctgcaggagacaagctgtggttaaaccttcga Alignment from Pairagon GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgtttttttctctttttttccttttcctgttccatcccataacagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTATCGTGGAAGGAGGACCCAATGTTATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGCAGTGGATGGGCATCCGACATCCTGGCATTTGGGCATGAATATTCAGAAGAAGGTGGgtgagtcaatgccaggtcctgcaggagacaagctgtggttaaaccttcga Alignment from Exonerate_protein2genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgtttttttctctttttttccttttcctgttccatcccataacagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTATCGTGGAAGGAGGACCCAATGTTATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGCAGTGGATGGGCATCCGACATCCTGGCATTTGGGCATGAATATTCAGAAGAAGGTGGgtgagtcaatgccaggtcctgcaggagacaagctgtggttaaaccttcga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgtttttttctctttttttccttttcctgttccatcccataacagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTATCGTGGAAGGAGGACCCAATGTTATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGCAGTGGATGGGCATCCGACATCCTGGCATTTGGGCATGAATATTCAGAAGAAGGTGGgtgagtcaatgccaggtcctgcaggagacaagctgtggttaaaccttcga #### Trpm3_ID5054_10 --> 2 - 0 Original Alignment gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG tgctttattttattttgttttgttttgtagcatttcctgtgccctcctaggtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGgtgaggtatacatcataggcgttacccctgacaagtgaccatgcacctga Alignment from CESAR gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG tgctttattttattttgttttgttttgtagcatttcctgtgccctcctaggtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGgtgaggtatacatcataggcgttacccctgacaagtgaccatgcacctga Alignment from Spaln_aa2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG tgctttattttattttgttttgttttgtagcatttcctgtgccctcctagGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGgtgaggtatacatcataggcgttacccctgacaagtgaccatgcacctga Alignment from Spaln_nt2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG tgctttattttattttgttttgttttgtagcatttcctgtgccctcctagGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGgtgaggtatacatcataggcgttacccctgacaagtgaccatgcacctga Alignment from Pairagon GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG tgctttattttattttgttttgttttgtagcatttcctgtgccctcctagGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGgtgaggtatacatcataggcgttacccctgacaagtgaccatgcacctga Alignment from Exonerate_protein2genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG tgctttattttattttgttttgttttgtagcatttcctgtgccctcctagGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGgtgaggtatacatcataggcgttacccctgacaagtgaccatgcacctga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG tgctttattttattttgttttgttttgtagcatttcctgtgccctcctagGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGgtgaggtatacatcataggcgttacccctgacaagtgaccatgcacctga #### Trpm3_ID5056_12 --> 0 - 0 Original Alignment AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG acccggaacccctgactagcaaatgtttgccatctcccaactgtacccagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtagccatcctctgaaccatagctcagaggcactgtcctgagtgcttcct Alignment from CESAR AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG acccggaacccctgactagcaaatgtttgccatctcccaactgtacccagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtagccatcctctgaaccatagctcagaggcactgtcctgagtgcttcct Alignment from Spaln_aa2Genome AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG acccggaacccctgactagcaaatgtttgccatctcccaactgtacccagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtagccatcctctgaaccatagctcagaggcactgtcctgagtgcttcct Alignment from Spaln_nt2Genome AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG acccggaacccctgactagcaaatgtttgccatctcccaactgtacccagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtagccatcctctgaaccatagctcagaggcactgtcctgagtgcttcct Alignment from Pairagon AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG acccggaacccctgactagcaaatgtttgccatctcccaactgtacccagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtagccatcctctgaaccatagctcagaggcactgtcctgagtgcttcct Alignment from Exonerate_protein2genome AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG acccggaacccctgactagcaaatgtttgccatctcccaactgtacccagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtagccatcctctgaaccatagctcagaggcactgtcctgagtgcttcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG acccggaacccctgactagcaaatgtttgccatctcccaactgtacccagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtagccatcctctgaaccatagctcagaggcactgtcctgagtgcttcct #### Trpm3_ID5058_14 --> 0 - 0 Original Alignment CCCAAAGCCTTGAAACTGCTGGGAATGGAG acctcaatgaaagcaatatctaactttgtcccaacctccctttctctaagCCCAAAGCCTTGAAACTGCTGGGAATGGAGgtaagggttttcttaaattattagcatcaattattctctctcacatactt Alignment from CESAR CCCAAAGCCTTGAAACTGCTGGGAATGGAG acctcaatgaaagcaatatctaactttgtcccaacctccctttctctaagCCCAAAGCCTTGAAACTGCTGGGAATGGAGgtaagggttttcttaaattattagcatcaattattctctctcacatactt Alignment from Spaln_aa2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG acctcaatgaaagcaatatctaactttgtcccaacctccctttctctaagCCCAAAGCCTTGAAACTGCTGGGAATGGAGgtaagggttttcttaaattattagcatcaattattctctctcacatactt Alignment from Spaln_nt2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG acctcaatgaaagcaatatctaactttgtcccaacctccctttctctaagCCCAAAGCCTTGAAACTGCTGGGAATGGAGgtaagggttttcttaaattattagcatcaattattctctctcacatactt Alignment from Pairagon CCCAAAGCCTTGAAACTGCTGGGAATGGAG acctcaatgaaagcaatatctaactttgtcccaacctccctttctctaagCCCAAAGCCTTGAAACTGCTGGGAATGGAGgtaagggttttcttaaattattagcatcaattattctctctcacatactt Alignment from Exonerate_protein2genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG acctcaatgaaagcaatatctaactttgtcccaacctccctttctctaagCCCAAAGCCTTGAAACTGCTGGGAATGGAGgtaagggttttcttaaattattagcatcaattattctctctcacatactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise acctcaatgaaagcaatatctaactttgtcccaacctccctttctctaagcccaaagccttgaaactgctgggaatggaggtaagggttttcttaaattattagcatcaattattctctctcacatactt #### Trpm3_ID5078_22 --> 2 - 2 Original Alignment ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa caatcaaatagccatggattctcgttttttgcgtttcccctttctttcagctCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAAGACAATCCAACTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCAAATATTCTTCTGGTCAACCTCCTGATTGCTGTCTTCaagtgagaggccactccttaagggatatgggaggatggatgggcagcaggca Alignment from CESAR ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa caatcaaatagccatggattctcgttttttgcgtttcccctttctttcagctCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAAGACAATCCAACTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCAAATATTCTTCTGGTCAACCTCCTGATTGCTGTCTTCaagtgagaggccactccttaagggatatgggaggatggatgggcagcaggca Alignment from Spaln_aa2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA caatcaaatagccatggattctcgttttttgcgtttcccctttctttcagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAAGACAATCCAACTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCAAATATTCTTCTGGTCAACCTCCTGATTGCTGTCTTCAAgtgagaggccactccttaagggatatgggaggatggatgggcagcaggca Alignment from Spaln_nt2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA caatcaaatagccatggattctcgttttttgcgtttcccctttctttcagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAAGACAATCCAACTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCAAATATTCTTCTGGTCAACCTCCTGATTGCTGTCTTCAAgtgagaggccactccttaagggatatgggaggatggatgggcagcaggca Alignment from Pairagon CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA caatcaaatagccatggattctcgttttttgcgtttcccctttctttcagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAAGACAATCCAACTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCAAATATTCTTCTGGTCAACCTCCTGATTGCTGTCTTCAAgtgagaggccactccttaagggatatgggaggatggatgggcagcaggca Alignment from Exonerate_protein2genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA caatcaaatagccatggattctcgttttttgcgtttcccctttctttcagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAAGACAATCCAACTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCAAATATTCTTCTGGTCAACCTCCTGATTGCTGTCTTCAAgtgagaggccactccttaagggatatgggaggatggatgggcagcaggca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA caatcaaatagccatggattctcgttttttgcgtttcccctttctttcagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAAGACAATCCAACTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCAAATATTCTTCTGGTCAACCTCCTGATTGCTGTCTTCAAgtgagaggccactccttaagggatatgggaggatggatgggcagcaggca #### Trpm6_ID4468_6 --> 2 - 0 Original Alignment gaGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcaggaGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact Alignment from CESAR gaGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcaggaGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact Alignment from Spaln_aa2Genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcagGAGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact Alignment from Spaln_nt2Genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcagGAGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact Alignment from Pairagon GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcagGAGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact Alignment from Exonerate_protein2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcagGAGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact Alignment from Exonerate_coding2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcagGAGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact Alignment from GeneWise GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatgaatcatgatctgtgagctcaaattgttttgttttcccacctgcagGAGTGTCCAAGCATGTAGGGGATGCCCTAGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTCGGAAAAGATgtaggaagacaatcctttccatcagcgggaaatgaaaatgtatctcaact #### Trpm6_ID4469_7 --> 0 - 1 Original Alignment GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTtgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct Alignment from CESAR GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTtgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct Alignment from Spaln_aa2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct Alignment from Spaln_nt2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct Alignment from Pairagon GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct Alignment from Exonerate_protein2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct Alignment from Exonerate_coding2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct Alignment from GeneWise GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tctagaaagaccttgagttctgatgccttatacttttttgtttcactcagGTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggagagctcagcctctggctgcaggcttgctagtgagcgtgcctcct #### Trpm6_ID4470_8 --> 2 - 2 Original Alignment gcTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAgg agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcaggcTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAgggtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc Alignment from CESAR gcTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAgg agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcaggcTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAgggtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc Alignment from Spaln_aa2Genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcagGCTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAGGgtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc Alignment from Spaln_nt2Genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcagGCTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAGGgtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc Alignment from Pairagon GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcagGCTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAGGgtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc Alignment from Exonerate_protein2genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcagGCTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAGGgtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc Alignment from Exonerate_coding2genome GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcagGCTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAGGgtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc Alignment from GeneWise GCTCAAGACAAGGTGTGCCTGTGGTGGGGCTGGTGATGGAAGGAGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAGGAGCCCGTGGTGGTGTGCGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCCTTCACTTACAAACATTTGGAGGATGGAGG agacaggacagattggtaatagtctggtgtgaccccgacaccccctgcagGCTCAAGACAAGGTGTGCCTGTAGTGCGGCTGGTGATGGAGGGTGGTCCCAATGTCATCCTCTGGGTATGGGAGACCGTCAAGAACAAAGAGCCCGTGGTGGTGTGTGAGGGGACAGGCAGAGCTGCTGACCTCTTGGCTTTCACTTACAAACATTTGGAGGATGGAGGgtcaggtgtggagccctctattctgaaaacacgtgactattccttcttcc #### Trpm6_ID4474_12 --> 0 - 0 Original Alignment CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt Alignment from CESAR CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt Alignment from Spaln_aa2Genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt Alignment from Spaln_nt2Genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt Alignment from Pairagon CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt Alignment from Exonerate_protein2genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt Alignment from Exonerate_coding2genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt Alignment from GeneWise CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA ctggcatactaattgttttcatgcctcttgtctcatccggtttgtgccagCCTGGTGCTCTAGAGCAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACCTTGTGAAACTTTTGATAGAGAATGGGGTAAACCTTCACCGCTTCCCTACCATCCCTCAACTGGAAGAGCTCTATAACACAgtacctatagattacttcatgtcaacttgctctggagttgtttgctattt #### Trpm6_ID4475_13 --> 0 - 0 Original Alignment AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat Alignment from CESAR AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat Alignment from Spaln_aa2Genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat Alignment from Spaln_nt2Genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat Alignment from Pairagon AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat Alignment from Exonerate_protein2genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat Alignment from Exonerate_coding2genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat Alignment from GeneWise AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG gcctccagcacatgaggaagtgcttcttttcttccctcatgtccccatagAAACAGGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGATATAAAGCAGgtaatgtaactatgagagttgaaattaccctttgcgtatgtgtattacat #### Trpm6_ID4491_27 --> 2 - 0 Original Alignment gtCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacaggtCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc Alignment from CESAR gtCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacaggtCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc Alignment from Spaln_aa2Genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacagGTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc Alignment from Spaln_nt2Genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacagGTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc Alignment from Pairagon GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacagGTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc Alignment from Exonerate_protein2genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacagGTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc Alignment from Exonerate_coding2genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacagGTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc Alignment from GeneWise GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG catcaccccaattggcttcagcattctctaaccacctctcttcctgacagGTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAAAGGAAGACCCAAGGGCTCCAGGTGCCGgtaagtctgcctcttactgtacatctgagtcagtgaactcaccacttggc #### Trpm6_ID4496_31 --> 1 - 1 Original Alignment aACAAGAAGTCCAAATGAAGTTCACa agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacaggACAAGGAGTCCAAATGAAGTTCACagtaagcttttatatttaaacatttatcttttattttatcactttccctgg Alignment from CESAR aACAAGAAGTCCAAATGAAGTTCACa agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacaggACAAGGAGTCCAAATGAAGTTCACagtaagcttttatatttaaacatttatcttttattttatcactttccctgg Alignment from Spaln_aa2Genome AACAAGAAGTCCAAATGAAGTTCACA agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacagGACAAGGAGTCCAAATGAAGTTCACAgtaagcttttatatttaaacatttatcttttattttatcactttccctgg Alignment from Spaln_nt2Genome AACAAGAAGTCCAAATGAAGTTCACA agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacagGACAAGGAGTCCAAATGAAGTTCACAgtaagcttttatatttaaacatttatcttttattttatcactttccctgg Alignment from Pairagon AACAAGAAGTCCAAATGAAGTTCACA agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacagGACAAGGAGTCCAAATGAAGTTCACAgtaagcttttatatttaaacatttatcttttattttatcactttccctgg Alignment from Exonerate_protein2genome AACAAGAAGTCCAAATGAAGTTCACA agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacagGACAAGGAGTCCAAATGAAGTTCACAgtaagcttttatatttaaacatttatcttttattttatcactttccctgg Alignment from Exonerate_coding2genome agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacaggacaaggagtccaaatgaagttcacagtaagcttttatatttaaacatttatcttttattttatcactttccctgg Alignment from GeneWise agtgtcttgatacttgaaaaacttagcactgtgacccctttggcccacaggacaaggagtccaaatgaagttcacagtaagcttttatatttaaacatttatcttttattttatcactttccctgg #### Trpm6_ID4504_34 --> 2 - 0 Original Alignment caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagccGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc Alignment from CESAR caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagccGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc Alignment from Spaln_aa2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagCCGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc Alignment from Spaln_nt2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagCCGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc Alignment from Pairagon CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagCCGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc Alignment from Exonerate_protein2genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagCCGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc Alignment from Exonerate_coding2genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagCCGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc Alignment from GeneWise CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG aaactccacaccccatattttattttacctctgtttcttgttctgaacagCCGGAGAGGAAGTGACTATCTACAAGCTTGAAGACAGCTCTCCTCTGACTCTTGATAAGAGCATATCCTCTTGGTTGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCAAGGTTGTGCAGACATGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGGgtgagacagaaccttagatcccaagatcccagaaaggagaacataagatc #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg cacatagccatacaggggatcggagagctggtccctcctctcctcaacaggcATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAggtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg cacatagccatacaggggatcggagagctggtccctcctctcctcaacaggcATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAggtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagccatacaggggatcggagagctggtccctcctctcctcaacagGCATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAGgtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagccatacaggggatcggagagctggtccctcctctcctcaacagGCATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAGgtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagccatacaggggatcggagagctggtccctcctctcctcaacagGCATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAGgtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagccatacaggggatcggagagctggtccctcctctcctcaacagGCATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAGgtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagccatacaggggatcggagagctggtccctcctctcctcaacagGCATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAGgtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg Alignment from GeneWise GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagccatacaggggatcggagagctggtccctcctctcctcaacagGCATTCGACCAAATTGTGAAGTGGCAGTGTTCATTGATGGACCCCTAGCCCTCACAGgtaggagtgtgccccgcagggctgactctcccaggcctgtcatggaaggg #### Trub1_ID12385_5 --> 2 - 2 Original Alignment atAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGct gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagatAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCActgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac Alignment from CESAR atAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGct gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagatAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCActgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac Alignment from Spaln_aa2Genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagATAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCACTgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac Alignment from Spaln_nt2Genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagATAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCACTgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac Alignment from Pairagon ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagATAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCACTgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac Alignment from Exonerate_protein2genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagATAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCACTgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac Alignment from Exonerate_coding2genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagATAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCACTgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac Alignment from GeneWise ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctgttggctctgtggccattgtcattgatgtgttatcgtttcttcttagATAAAATAACACGAGAAGATATTGAAGGGATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCACTgtacgctcagttgcttaatttatgtttaattttaatgtctgttggctaac #### Trub1_ID12387_7 --> 2 - 1 Original Alignment atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagagctctccagaggccagcctctcacgttgtcactttcttactttcagatGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAggtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct Alignment from CESAR atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagagctctccagaggccagcctctcacgttgtcactttcttactttcagatGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAggtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct Alignment from Spaln_aa2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagagctctccagaggccagcctctcacgttgtcactttcttactttcagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAGgtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct Alignment from Spaln_nt2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagagctctccagaggccagcctctcacgttgtcactttcttactttcagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAGgtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct Alignment from Pairagon ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagagctctccagaggccagcctctcacgttgtcactttcttactttcagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAGgtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct Alignment from Exonerate_protein2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagagctctccagaggccagcctctcacgttgtcactttcttactttcagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAGgtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct Alignment from Exonerate_coding2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagagctctccagaggccagcctctcacgttgtcactttcttactttcagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAGgtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct Alignment from GeneWise ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagagctctccagaggccagcctctcacgttgtcactttcttactttcagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCCTGGTCAGTGACATCGGAAAAGgtaagcagagaatgagttatcaaccattgtttagatagtcatgctcctct #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccatagACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACaggtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccatagACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACaggtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccatagACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAGgtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccatagACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAGgtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccaTAGACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAGgtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct Alignment from Exonerate_protein2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccatagACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAGgtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct Alignment from Exonerate_coding2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccatagACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAGgtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG ccaagcagccttaatgaagggtaggaacatgctcgctctcctttccatag---ACCAACGCCAGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAGgtatgtggggacaaggtatctgcctagtgttccccatgtcacacatggct #### Ttc9c_ID2391_2 --> 2 - 1 Original Alignment ccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAg ctcatgtataataagccctcctccttttccttgcatgctgatccttccagccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAggtaggggagagatgagcatatatcaatttattagtacagagaagggatga Alignment from CESAR ccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAg ctcatgtataataagccctcctccttttccttgcatgctgatccttccagccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAggtaggggagagatgagcatatatcaatttattagtacagagaagggatga Alignment from Spaln_aa2Genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG ctcatgtataataagccctcctccttttccttgcatgctgatccttccagCCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAGgtaggggagagatgagcatatatcaatttattagtacagagaagggatga Alignment from Spaln_nt2Genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG ctcatgtataataagccctcctccttttccttgcatgctgatccttccagCCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAGgtaggggagagatgagcatatatcaatttattagtacagagaagggatga Alignment from Pairagon CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG ctcatgtataataagccctcctccttttccttgcatgctgatccttccagCCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAGgtaggggagagatgagcatatatcaatttattagtacagagaagggatga Alignment from Exonerate_protein2genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG ctcatgtataataagccctcctccttttccttgcatgctgatccttccagCCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAGgtaggggagagatgagcatatatcaatttattagtacagagaagggatga Alignment from Exonerate_coding2genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG ctcatgtataataagccctcctccttttccttgcatgctgatccttccagCCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAGgtaggggagagatgagcatatatcaatttattagtacagagaagggatga Alignment from GeneWise CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG ctcatgtataataagccctcctccttttccttgcatgctgatccttccagCCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTGGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCGTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAGgtaggggagagatgagcatatatcaatttattagtacagagaagggatga #### Ubtd1_ID8362_2 --> 2 - 1 Original Alignment gtCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATg tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccaggtTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATggtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca Alignment from CESAR gtCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATg tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccaggtTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATggtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca Alignment from Spaln_aa2Genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccagGTTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATGgtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca Alignment from Spaln_nt2Genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccagGTTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATGgtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca Alignment from Pairagon GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccagGTTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATGgtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca Alignment from Exonerate_protein2genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccagGTTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATGgtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca Alignment from Exonerate_coding2genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccagGTTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATGgtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca Alignment from GeneWise GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggtcgtttccccgcgtgatatgcaagtctgtcctgctcgtcctccagGTTGCAATGAGCCTTTGAAGAAGGAGCGACTCAAGTGGAAGAGTGACTATCCTATGACCGATGGGCAGCTGCGGAGCAAACGAGATGAGTTTTGGGACACAGCACCTGCCTTCGAGGGGCGCAAGGAGATCTGGGATGCCCTCAAGGCTGTTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCCCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATGgtagggggtcaggccctgggctctgtcctcacttgaactgggggatttca #### Ubxn1_ID2440_4 --> 2 - 2 Original Alignment gcTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGag agaaagtcagtgatgttatctagatactgagactgtcaacttctatctaggcTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGaggtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg Alignment from CESAR gcTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGag agaaagtcagtgatgttatctagatactgagactgtcaacttctatctaggcTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGaggtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg Alignment from Spaln_aa2Genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG agaaagtcagtgatgttatctagatactgagactgtcaacttctatctagGCTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGAGgtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg Alignment from Spaln_nt2Genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG agaaagtcagtgatgttatctagatactgagactgtcaacttctatctagGCTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGAGgtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg Alignment from Pairagon GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG agaaagtcagtgatgttatctagatactgagactgtcaacttctatctagGCTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGAGgtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg Alignment from Exonerate_protein2genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG agaaagtcagtgatgttatctagatactgagactgtcaacttctatctagGCTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGAGgtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg Alignment from Exonerate_coding2genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG agaaagtcagtgatgttatctagatactgagactgtcaacttctatctagGCTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGAGgtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg Alignment from GeneWise GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG agaaagtcagtgatgttatctagatactgagactgtcaacttctatctagGCTCTGGGTCTGCTGCTGGAAAAAGCAGACCCATCTTGACTGAAGAGGAGAGAAAAGAACAGACCAGGAGgtaaccggcaagttaagtgtgtgtgtgtgtgtggtgtgtgttttgtttgg #### Uhrf2_ID6375_6 --> 2 - 2 Original Alignment ggAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtg tgattgatagacacacaattgtaacattttaatggtttattttttactagggAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtggtaagttcaccagggctttgtcttctgtttcatttttccactaatattca Alignment from CESAR ggAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtg tgattgatagacacacaattgtaacattttaatggtttattttttactagggAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtggtaagttcaccagggctttgtcttctgtttcatttttccactaatattca Alignment from Spaln_aa2Genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG tgattgatagacacacaattgtaacattttaatggtttattttttactagGGAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTGgtaagttcaccagggctttgtcttctgtttcatttttccactaatattca Alignment from Spaln_nt2Genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG tgattgatagacacacaattgtaacattttaatggtttattttttactagGGAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTGgtaagttcaccagggctttgtcttctgtttcatttttccactaatattca Alignment from Pairagon GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG tgattgatagacacacaattgtaacattttaatggtttattttttactagGGAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTGgtaagttcaccagggctttgtcttctgtttcatttttccactaatattca Alignment from Exonerate_protein2genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG tgattgatagacacacaattgtaacattttaatggtttattttttactagGGAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTGgtaagttcaccagggctttgtcttctgtttcatttttccactaatattca Alignment from Exonerate_coding2genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG tgattgatagacacacaattgtaacattttaatggtttattttttactagGGAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTGgtaagttcaccagggctttgtcttctgtttcatttttccactaatattca Alignment from GeneWise GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG tgattgatagacacacaattgtaacattttaatggtttattttttactagGGAAAAATGACCCTGAGTGTGACCTATGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCATGTCATAAGTGTGGAGAGAAGCAGGACCCCAACATGCAGCTGCTGTGTGATGAATGCAATATGTCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTGgtaagttcaccagggctttgtcttctgtttcatttttccactaatattca #### Uhrf2_ID6376_7 --> 1 - 0 Original Alignment gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta Alignment from CESAR gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta Alignment from Spaln_aa2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta Alignment from Spaln_nt2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta Alignment from Pairagon GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta Alignment from Exonerate_protein2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta Alignment from Exonerate_coding2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta Alignment from GeneWise GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG cactggttttagttgccagacattgctttttcctgtggcatatttcttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGACTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGAAGGGACTGGGGCAGGgtgggtaaaaacctgccctcctttcactgtcctgttaacagttaatagta #### Uhrf2_ID6382_12 --> 0 - 0 Original Alignment GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca Alignment from CESAR GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca Alignment from Spaln_aa2Genome GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca Alignment from Spaln_nt2Genome GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca Alignment from Pairagon GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca Alignment from Exonerate_protein2genome GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca Alignment from Exonerate_coding2genome GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca Alignment from GeneWise GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG gtcattctgaacctgacaattcaatgtagggccctgtcacgtccttctagGTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCTAGGAGACTGTGTCTGCGATTGCAGgtgagctcccctgagtctgtactgctctgtccctataagaatgtaccgca #### Uhrf2_ID6384_14 --> 2 - 0 Original Alignment atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagatGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg Alignment from CESAR atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagatGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg Alignment from Spaln_aa2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagATGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg Alignment from Spaln_nt2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagATGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg Alignment from Pairagon ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagATGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg Alignment from Exonerate_protein2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagATGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg Alignment from Exonerate_coding2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagATGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg Alignment from GeneWise ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgagggtctaatcaggatttttccatttgtcaacagATGAGTGTCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagtactgcttttctaccagtgtatactgcttttcttaactaatcatg #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcaggATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcaggATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaggaagtgtggcagcaggcaggcttgctctcccgtctctgttgcagGATGTCCCAGAAGTACTATGAATACTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCCCACACGCCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCATgtaagtgctacaggaagccttgggggagatgggaagaggaggatagtctg #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcaggcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcaggcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG aggaatttgcctacaagcaaaactaaatccccaatggtgtctctcttcagGCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTGAGGAACACGGTAGCTCTTGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtgagctccatctgcacccctgatgtctaggaagcacagccattaggtct #### Vldlr_ID5812_11 --> 1 - 2 Original Alignment tGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGgg aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagtGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGgggtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc Alignment from CESAR tGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGgg aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagtGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGgggtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc Alignment from Spaln_aa2Genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc Alignment from Spaln_nt2Genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc Alignment from Pairagon TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc Alignment from Exonerate_protein2genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc Alignment from Exonerate_coding2genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc Alignment from GeneWise TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgacaatttttaaatctgcccttgtttgatttgttttagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtaacaatttgatgatttccttcacttaacctttttgggtgaaagccacc #### Vldlr_ID5818_17 --> 2 - 1 Original Alignment ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagggATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCtgtaataaaatttgcttctcatatggacttttatggatgattttagttcat Alignment from CESAR ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagggATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCtgtaataaaatttgcttctcatatggacttttatggatgattttagttcat Alignment from Spaln_aa2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagGGATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtaataaaatttgcttctcatatggacttttatggatgattttagttcat Alignment from Spaln_nt2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagGGATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtaataaaatttgcttctcatatggacttttatggatgattttagttcat Alignment from Pairagon GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagGGATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtaataaaatttgcttctcatatggacttttatggatgattttagttcat Alignment from Exonerate_protein2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagGGATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtaataaaatttgcttctcatatggacttttatggatgattttagttcat Alignment from Exonerate_coding2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagGGATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtaataaaatttgcttctcatatggacttttatggatgattttagttcat Alignment from GeneWise GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagtctttagtccaaaaccttagaaactctcaccaccctttgccctctagGGATCAATGTTACCACAGCAGTATCGGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtaataaaatttgcttctcatatggacttttatggatgattttagttcat #### Vps13a_ID4052_71 --> 0 - 0 Original Alignment GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg Alignment from CESAR GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg Alignment from Spaln_aa2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg Alignment from Spaln_nt2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg Alignment from Pairagon GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg Alignment from Exonerate_protein2genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg Alignment from Exonerate_coding2genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg Alignment from GeneWise GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gcgctattttaaaacacataagtatacagtcctttctgtggcctctgcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaggtataattcatcttttgtttaagctacgtagaagcatctcactttg #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctatcacaccaggtctttacttttattattattattattatagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaaatagcagggaaacccagcaacactgcccacaccagtaataactgag #### Vps13a_ID4062_61 --> 0 - 2 Original Alignment TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaa taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaagtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg Alignment from CESAR TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaa taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaagtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg Alignment from Spaln_aa2Genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAAgtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg Alignment from Spaln_nt2Genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAAgtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg Alignment from Pairagon TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAAgtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg Alignment from Exonerate_protein2genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAAgtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg Alignment from Exonerate_coding2genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAAgtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg Alignment from GeneWise TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA taaacagagctagggaaagtgctttaatgcaaccatgaattccatcctagTTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAAgtaagtccaatacttatatctataaactaatgaatcgttcatttatgctg #### Vps13a_ID4063_60 --> 0 - 0 Original Alignment GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTTA---TATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg Alignment from CESAR GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTTA---TATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg Alignment from Spaln_aa2Genome GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTTA---TATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg Alignment from Spaln_nt2Genome GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTT---ATATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg Alignment from Pairagon GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTT---ATATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg Alignment from Exonerate_protein2genome GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTTA---TATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg Alignment from Exonerate_coding2genome GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTTA---TATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg Alignment from GeneWise GTGGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCACAAGTCAATCTCTTTGAATATTTTCATATATCTCCTATCAAG tgtttcatgaatgggtcctggtcctttctcagccgcctccccccttctagGTAGAACATTTTCATAAGGATGTAGAAGCATTTGAACAAGAATATGAAGTTGTTTCATCAGTAGATCAATCGCAAGTCAATCTCTTA---TATTTTCATATATCTCCTATCAAGgtaagtaaaaaaaatcatttttattttataaactaaatgactataaattg #### Vps13a_ID4067_56 --> 0 - 0 Original Alignment GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg Alignment from CESAR GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg Alignment from Spaln_aa2Genome GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg Alignment from Spaln_nt2Genome GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg Alignment from Pairagon GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg Alignment from Exonerate_protein2genome GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg Alignment from Exonerate_coding2genome GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg Alignment from GeneWise GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG ataaatttgtaatttaatccatctcactaccaacatttgttctcttacagGTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCTCATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAGTATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAGgtgagtttgaaagtgaaggcagagcagtaaaaaccccgtgtatccacctg #### Vps13a_ID4073_50 --> 0 - 0 Original Alignment GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt Alignment from CESAR GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt Alignment from Spaln_aa2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt Alignment from Spaln_nt2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt Alignment from Pairagon GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt Alignment from Exonerate_protein2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt Alignment from Exonerate_coding2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt Alignment from GeneWise GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tatctactaggtacttaagttttataggtcactggaggcctctatttcagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTACATGATCAAGAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtgggtaaatgaattttatataatgtactgtctactcctgtgcacaatgt #### Vps13a_ID4078_45 --> 2 - 0 Original Alignment cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagcaCCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga Alignment from CESAR cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagcaCCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga Alignment from Spaln_aa2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagCACCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga Alignment from Spaln_nt2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagCACCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga Alignment from Pairagon CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagCACCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga Alignment from Exonerate_protein2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagCACCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga Alignment from Exonerate_coding2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagCACCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga Alignment from GeneWise CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG tactatgtgatgcactaccattaacactaacttaaacactttgtctacagCACCTGCTAACCACTCTGTCGCTGACAAAATCCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTTGAAGGAAGTAAGAAGGTAACAATCCACTCACCAGTGCAGgtgagaagtacaaaaagttacttagagggcatttgtttgcatttgtctga #### Vps13a_ID4079_44 --> 0 - 1 Original Alignment GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTa tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTagtagtggagattttttccttcctggtgctttttaaagtgattttcaagag Alignment from CESAR GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTa tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTagtagtggagattttttccttcctggtgctttttaaagtgattttcaagag Alignment from Spaln_aa2Genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTAgtagtggagattttttccttcctggtgctttttaaagtgattttcaagag Alignment from Spaln_nt2Genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTAgtagtggagattttttccttcctggtgctttttaaagtgattttcaagag Alignment from Pairagon GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTAgtagtggagattttttccttcctggtgctttttaaagtgattttcaagag Alignment from Exonerate_protein2genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTAgtagtggagattttttccttcctggtgctttttaaagtgattttcaagag Alignment from Exonerate_coding2genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTAgtagtggagattttttccttcctggtgctttttaaagtgattttcaagag Alignment from GeneWise GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA tgctcacacccttgcctttcatgtccctctcatgttgtttcctctcaaagGCATTTACTGAAGCTGCTACTGGATCATCATCCGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTTTTGGCCTTACTGTCTCTGTCTCACCAAGTGACTCTTTTAGCGTTCTCAATGTTACTCTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTGCGAACAAAGGACAATGATCATTTCAATGCAATAACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTAgtagtggagattttttccttcctggtgctttttaaagtgattttcaagag #### Vps13a_ID4088_35 --> 0 - 1 Original Alignment TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAg agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAggtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt Alignment from CESAR TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAg agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAggtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt Alignment from Spaln_aa2Genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAGgtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt Alignment from Spaln_nt2Genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAGgtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt Alignment from Pairagon TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAGgtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt Alignment from Exonerate_protein2genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAGgtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt Alignment from Exonerate_coding2genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAGgtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt Alignment from GeneWise TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG agcaaatctgagtattttctttgtgtaaccttctctcggtccctgtgcagTTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAACATTTGGTATGGACAAGACCTGAGTGCTCCATCTTCTGCAAATACAGACCCAGAGACTATGACCAGTGGGGTCACCAGCCCTCCTGACCATTCGCCAGgtaagagctgggcttgactttctcttctgattctgcctcctctcttcttt #### Vps13a_ID4090_33 --> 0 - 2 Original Alignment GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACag actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACaggtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt Alignment from CESAR GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACag actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACaggtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt Alignment from Spaln_aa2Genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAGgtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt Alignment from Spaln_nt2Genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAGgtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt Alignment from Pairagon GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAGgtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt Alignment from Exonerate_protein2genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAGgtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt Alignment from Exonerate_coding2genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAGgtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt Alignment from GeneWise GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG actgtttgttttattaaacgtgatgtgaatttctgactctatacacacagGCATTTATAGATAATTTTCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAAGAACTGGCTCGAAAAAGCTCTAGATTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAATGTTTTTGTTGCTGATTTTGGATTAATTACCATGAAAAACACATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAGgtaagttatttttacaatacatttgtttaaaagaaatctatccttttctt #### Vps13a_ID4092_31 --> 2 - 0 Original Alignment ggCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagggCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt Alignment from CESAR ggCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagggCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt Alignment from Spaln_aa2Genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagGGCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt Alignment from Spaln_nt2Genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagGGCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt Alignment from Pairagon GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagGGCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt Alignment from Exonerate_protein2genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagGGCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt Alignment from Exonerate_coding2genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagGGCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt Alignment from GeneWise GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgacaaattgaagaagacagaataatccttcccttccctccttcccaagGGCTTGATTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgaggttttgtctttattaaatgctaatacatcattaatatgtagtgtt #### Vps13a_ID4096_27 --> 2 - 0 Original Alignment atGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagatGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag Alignment from CESAR atGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagatGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag Alignment from Spaln_aa2Genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagATGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag Alignment from Spaln_nt2Genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagATGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag Alignment from Pairagon ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagATGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag Alignment from Exonerate_protein2genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagATGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag Alignment from Exonerate_coding2genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagATGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag Alignment from GeneWise ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG tctcttcagttaagtttcccaccaagaggtcctagctgtcttcttcccagATGAAAACAAGAAACCAGTTTATTTGATCACAACCCAGGATAATACAATGGAAGATTTATTAACATTAGAATTTATGAAGgtccgaagctttgatatcaccatgtttccggtcaggtgcaggagaccaag #### Vps13a_ID4098_25 --> 2 - 0 Original Alignment acTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagacTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc Alignment from CESAR acTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagacTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc Alignment from Spaln_aa2Genome ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagACTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc Alignment from Spaln_nt2Genome ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagACTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc Alignment from Pairagon ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagACTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc Alignment from Exonerate_protein2genome ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagACTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc Alignment from Exonerate_coding2genome ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagACTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc Alignment from GeneWise ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG aaaatttatgttacttccattgctgacttgactgttaatttttcaaccagACTCAGAGGAAGAATTTTTTGACGCACCCTGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCAACAAAAAAAATTGCAAAAAAAAGATTGTGTCATGAATCTCATTCAACTTAGGATGAGATTTGAAGTAGCAGAGgtaagttacactcaatgtgggctatgtgaattgtcattatactttgtacc #### Vps13a_ID4099_24 --> 0 - 1 Original Alignment ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATggtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg Alignment from CESAR ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATggtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg Alignment from Spaln_aa2Genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATGgtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg Alignment from Spaln_nt2Genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATGgtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg Alignment from Pairagon ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATGgtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg Alignment from Exonerate_protein2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATGgtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg Alignment from Exonerate_coding2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATGgtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg Alignment from GeneWise ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataaatggtctgccttccaattgattctttcttttttcaatttcagATTCAAGCATCTACTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTCATTGGAACAGCCTGTTACTGAAGATGgtaagaataaactgcttaacagaatcttttttgttaaatatgcctgactg #### Vps13a_ID4104_19 --> 0 - 1 Original Alignment AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAg tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAggtatgatctcagttaactaaagtatttacattttactataaatgcatttc Alignment from CESAR AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAg tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAggtatgatctcagttaactaaagtatttacattttactataaatgcatttc Alignment from Spaln_aa2Genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAGgtatgatctcagttaactaaagtatttacattttactataaatgcatttc Alignment from Spaln_nt2Genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAGgtatgatctcagttaactaaagtatttacattttactataaatgcatttc Alignment from Pairagon AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAGgtatgatctcagttaactaaagtatttacattttactataaatgcatttc Alignment from Exonerate_protein2genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAGgtatgatctcagttaactaaagtatttacattttactataaatgcatttc Alignment from Exonerate_coding2genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAGgtatgatctcagttaactaaagtatttacattttactataaatgcatttc Alignment from GeneWise AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtttacttagttgtgcttcatcttcctttgcttctgtcaccagAGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATATAGCCCAACTTACTTCAGTAACTTTGACAACACTCGAAGAATTTCGTGCAAAAACAGCAACAGgtatgatctcagttaactaaagtatttacattttactataaatgcatttc #### Vps13a_ID4105_18 --> 1 - 0 Original Alignment aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagaTTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt Alignment from CESAR aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagaTTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt Alignment from Spaln_aa2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagATTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt Alignment from Spaln_nt2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagATTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt Alignment from Pairagon ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagATTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt Alignment from Exonerate_protein2genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagATTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt Alignment from Exonerate_coding2genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagATTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt Alignment from GeneWise ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tgaaaaactttaaatttatattgactcctgctgctcctccctttggacagATTTGAAACCAAAATTGATTCATTTCATATCACTGGCTTACCAGATGATTTCCAAAAACCCCACCTACTGTCTTCATTGGATGATACGTTGCTCCTCCAGATTACATTTGAAATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCAgtaaataatttctgtattcccaagttccagtgtgtttttgtttacttagt #### Vps13a_ID4114_9 --> 0 - 0 Original Alignment CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from CESAR CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Spaln_aa2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Spaln_nt2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Pairagon CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Exonerate_protein2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from Exonerate_coding2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt Alignment from GeneWise CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG ggatgcatggcaaaatctttaaaacaaaagtaacaactctttttctaaagCTAATCCGGTTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTGgtaggtagatatttatgtgcatatctgttgttttatattgtataatgctt #### Vps13a_ID4117_6 --> 2 - 0 Original Alignment aaAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagaaAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc Alignment from CESAR aaAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagaaAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc Alignment from Spaln_aa2Genome AAAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagAAAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc Alignment from Spaln_nt2Genome AAAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagAAAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc Alignment from Pairagon AAAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagAAAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc Alignment from Exonerate_protein2genome AAAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagAAAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc Alignment from Exonerate_coding2genome AAAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagAAAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc Alignment from GeneWise AAAAGCCTCGGGAGGAGAAACAGGACACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ataattatagggtttgtgtttcacacaaaagactgtattgtcaatttcagAAAAGCCTCGGGAGGAGAAACACGACACATTTACAGAAAAGTTGGTTACACAGATCATACAGAATCTTCAAGTGCAAATCTCCAGCATCCATATACGTTATGAAGATGATgtaagtactttgtcctcgtgtatgtatttgaatgtgtgtggcttttgtcc #### Vps13a_ID4118_5 --> 2 - 1 Original Alignment gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcaggaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAggtgagttatcaataaactggtagctattgtattagctattgtttttgcta Alignment from CESAR gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcaggaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAggtgagttatcaataaactggtagctattgtattagctattgtttttgcta Alignment from Spaln_aa2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAGgtgagttatcaataaactggtagctattgtattagctattgtttttgcta Alignment from Spaln_nt2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAGgtgagttatcaataaactggtagctattgtattagctattgtttttgcta Alignment from Pairagon GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAGgtgagttatcaataaactggtagctattgtattagctattgtttttgcta Alignment from Exonerate_protein2genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAGgtgagttatcaataaactggtagctattgtattagctattgtttttgcta Alignment from Exonerate_coding2genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAGgtgagttatcaataaactggtagctattgtattagctattgtttttgcta Alignment from GeneWise GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgggtttgagtatacttaaaattgtatatttcaaatttcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAGgtgagttatcaataaactggtagctattgtattagctattgtttttgcta #### Vps37c_ID2983_3 --> 2 - 0 Original Alignment agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagagAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt Alignment from CESAR agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagagAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt Alignment from Spaln_aa2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagAGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt Alignment from Spaln_nt2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagAGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt Alignment from Pairagon AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagAGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt Alignment from Exonerate_protein2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagAGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt Alignment from Exonerate_coding2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagAGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt Alignment from GeneWise AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaagcagtgcttttgaaaggttggaccacttttccttgcccgcagAGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGgtaacttggggagcgatcctaatcccttgaacagtggtgggcctcagagt #### Vti1a_ID11634_3 --> 0 - 0 Original Alignment CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg Alignment from CESAR CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg Alignment from Spaln_aa2Genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg Alignment from Spaln_nt2Genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg Alignment from Pairagon CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg Alignment from Exonerate_protein2genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg Alignment from Exonerate_coding2genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg Alignment from GeneWise CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggcaaagaaagaatgctaatgtggttcatttttattttcatttcttttagCTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTTgtaaattcagttctgctcatccctcgagtgcgcaataatggggtttgggg #### Vti1a_ID11656_4 --> 0 - 0 Original Alignment AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg Alignment from CESAR AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg Alignment from Spaln_aa2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg Alignment from Spaln_nt2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg Alignment from Pairagon AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg Alignment from Exonerate_protein2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg Alignment from Exonerate_coding2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg Alignment from GeneWise AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG agttactttctaacgctcatcttgtttctgctgacctcccggctccacagAAAAGGTCACGGATCGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtgagttgctaatgaggaaggtccagtgggtggctgcagggtggagaagg #### Vwce_ID2949_4 --> 2 - 1 Original Alignment aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagaaGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAggtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc Alignment from CESAR aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagaaGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAggtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc Alignment from Spaln_aa2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc Alignment from Spaln_nt2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc Alignment from Pairagon AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc Alignment from Exonerate_protein2genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc Alignment from Exonerate_coding2genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc Alignment from GeneWise AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG cacctgctgtgcagctgtgttgacatgtacatctctctgttcctctccagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtgagtagcctggaagtgggggcaggcgaaggtggaatcgcatctcctcc #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagacTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagacTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat #### Wdr74_ID2316_6 --> 0 - 0 Original Alignment GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca Alignment from CESAR GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca Alignment from Spaln_aa2Genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca Alignment from Spaln_nt2Genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca Alignment from Pairagon GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca Alignment from Exonerate_protein2genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca Alignment from Exonerate_coding2genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca Alignment from GeneWise GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattggaggaaacaagtcaggcgaaacatcacaatatttttcagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgagcctctttttactcccggattgaagtagcttgaattcagaaataca #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagggCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagggCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG acactagagtggctggttagccaacacctgctggccgctctctcttgcagGGCGACTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcactggccattctaacttaccttttctggaa #### Wdr96_ID10336_35 --> 0 - 0 Original Alignment ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc Alignment from CESAR ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc Alignment from Spaln_aa2Genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc Alignment from Spaln_nt2Genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc Alignment from Pairagon ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc Alignment from Exonerate_protein2genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc Alignment from Exonerate_coding2genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc Alignment from GeneWise ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG atagaatcagacactgacgcctcatttactctgctccctcctaaccccagACTCAAGGACAAAAGAAAGTTGCTAGCACGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATTGAGATGCTCTTCTTCTCACGAGACCGGCAGAAGgtaaggcttccctgccccacctgtgttcattcttcccaacaacttgctgc #### Wdr96_ID10338_33 --> 0 - 2 Original Alignment GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCcg tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCcggtctgccagcttctcaggggattctgttcctacccagtatgaatggggct Alignment from CESAR GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCcg tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCcggtctgccagcttctcaggggattctgttcctacccagtatgaatggggct Alignment from Spaln_aa2Genome GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCCGgtctgccagcttctcaggggattctgttcctacccagtatgaatggggct Alignment from Spaln_nt2Genome GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCCGgtctgccagcttctcaggggattctgttcctacccagtatgaatggggct Alignment from Pairagon GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCCGgtctgccagcttctcaggggattctgttcctacccagtatgaatggggct Alignment from Exonerate_protein2genome GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCCGgtctgccagcttctcaggggattctgttcctacccagtatgaatggggct Alignment from Exonerate_coding2genome GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCCGgtctgccagcttctcaggggattctgttcctacccagtatgaatggggct Alignment from GeneWise GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG tggtcatcaagtgttcttgtgttgtgactggtcttcttgattccctccagGTGAAGCAGAAGGCGGCCTGCCTTCTGCAAATGACAACTTTTCTCCGCAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAACAGTGTTCCATGAGCTCATCCGgtctgccagcttctcaggggattctgttcctacccagtatgaatggggct #### Wdr96_ID10343_28 --> 0 - 0 Original Alignment TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg Alignment from CESAR TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg Alignment from Spaln_aa2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg Alignment from Spaln_nt2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg Alignment from Pairagon TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg Alignment from Exonerate_protein2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg Alignment from Exonerate_coding2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg Alignment from GeneWise TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG tgcaacaaagtgtgaatgccacaagtgtgttcctgtaatcatgcctacagTCTTTAGAAGCCGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAGgtgagcgaagctttcgcttctgtatcttgtccttttaagtagcctgtggg #### Wdr96_ID10345_26 --> 0 - 0 Original Alignment ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc Alignment from CESAR ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc Alignment from Spaln_aa2Genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc Alignment from Spaln_nt2Genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc Alignment from Pairagon ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc Alignment from Exonerate_protein2genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc Alignment from Exonerate_coding2genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc Alignment from GeneWise ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG gcgtcagctctctgtataaaacaccttctgtctgcttatctgtttgctagATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTGCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGgtgaggtactttgctgtctttgtgggaaacggaatgagctccttaaatcc #### Wdr96_ID10350_21 --> 0 - 0 Original Alignment ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc Alignment from CESAR ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc Alignment from Spaln_aa2Genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc Alignment from Spaln_nt2Genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc Alignment from Pairagon ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc Alignment from Exonerate_protein2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc Alignment from Exonerate_coding2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc Alignment from GeneWise ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG aagaccaaccatagcattgtcttccctttggtgtgtggtttcatttccagATAAGGAAGGATGTGGAGATGCACAACTTGGCACAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCAGTGAAGGGCCGGGCTCTAAAGgtaaacgacacacagcctccaacacagcagcctggccagtgagggtgttc #### Wdr96_ID10353_18 --> 0 - 0 Original Alignment AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct Alignment from CESAR AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct Alignment from Spaln_aa2Genome AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct Alignment from Spaln_nt2Genome AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct Alignment from Pairagon AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct Alignment from Exonerate_protein2genome AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct Alignment from Exonerate_coding2genome AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct Alignment from GeneWise AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG ttccctatgctaaaaaaaaaaaaaagaacaccaaattggggtttctgcagAAACACCTGAACTCAGATTCATCAGAAGAGGAAGCAGTCATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGgtgagtatgatcattattattattattaattctgttgagacagggtatct #### Wdr96_ID10354_17 --> 1 - 0 Original Alignment gCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttaggAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa Alignment from CESAR gCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttaggAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa Alignment from Spaln_aa2Genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttagGAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa Alignment from Spaln_nt2Genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttagGAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa Alignment from Pairagon GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttagGAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa Alignment from Exonerate_protein2genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttagGAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa Alignment from Exonerate_coding2genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttagGAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa Alignment from GeneWise GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttccctctctccctctaaacctcgctcctgtctcttagGAGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCACTAGTGCTCCATCTGTCACAGACAGTGGAATCAGAGAGTGTATACTTAGCTTTAGCGAGAGAGTCCACAAATGAGCAGCAAGAAGAGGCAACTGAATCCCAAgtaatacgcctgccttttccctctgtataagcatgttttcccttcatcaa #### Wdr96_ID10360_11 --> 0 - 2 Original Alignment GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGac tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGatgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga Alignment from CESAR GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGac tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGatgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga Alignment from Spaln_aa2Genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGATgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga Alignment from Spaln_nt2Genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGATgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga Alignment from Pairagon GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGATgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga Alignment from Exonerate_protein2genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGATgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga Alignment from Exonerate_coding2genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGATgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga Alignment from GeneWise GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaactaaaggggcatcgcaccatcagcatttctctgcgctcactgcagGCAACAGCTCTGGCGTGCTCCCCTTCCTCACCGACAGCTGCCGTGGGGACAGTGGATGGCTATGTCTACTTTCTGAACATCCTCGATGTGGAGTCTCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGATgtatagaccatcttcactagccatgctatcatcagacttgcctgtaggga #### Wdr96_ID10361_10 --> 0 - 0 Original Alignment ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt Alignment from CESAR ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt Alignment from Spaln_aa2Genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt Alignment from Spaln_nt2Genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt Alignment from Pairagon ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt Alignment from Exonerate_protein2genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt Alignment from Exonerate_coding2genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt Alignment from GeneWise ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA actagctgttcagcaagtacttgttcagaactacactgtttgctttacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTGAAGACTCAAgtgggcgtgtcccgtaaatccatgattaaaatatctattctgcctgcagt #### Wdr96_ID10368_3 --> 2 - 2 Original Alignment gtGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCtg aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcaggtGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCtggtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg Alignment from CESAR gtGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCtg aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcaggtGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCtggtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg Alignment from Spaln_aa2Genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcagGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCTGgtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg Alignment from Spaln_nt2Genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcagGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCTGgtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg Alignment from Pairagon GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcagGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCTGgtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg Alignment from Exonerate_protein2genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcagGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCTGgtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg Alignment from Exonerate_coding2genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcagGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCTGgtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg Alignment from GeneWise GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG aagttgactaggtaactgtctgtagaatacaccctcttcctcttctgcagGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGTACCTACCTGGCGAGTTACTCATCTCTCCCAGAGTTTGACCTGGCCCCCTGgtatagccgagcaccctggagtgttctcttctccacccaaccaccccctg #### Wnt8b_ID9021_4 --> 2 - 1 Original Alignment ctAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGg gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagctAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGggtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca Alignment from CESAR ctAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGg gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagctAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGggtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca Alignment from Spaln_aa2Genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagCTAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGGgtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca Alignment from Spaln_nt2Genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagCTAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGGgtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca Alignment from Pairagon CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagCTAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGGgtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca Alignment from Exonerate_protein2genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagCTAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGGgtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca Alignment from Exonerate_coding2genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagCTAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGGgtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca Alignment from GeneWise CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG gaggaacgaactgggacctcttttaaccgcatccttctgcctccctacagCTAACCGGGAGACAGCATTTGTGCACACCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCAACTGGgtgagaagaaatggggtgaggtggggtagaggggtgtactgaggagcaca #### Xpnpep1_ID11139_16 --> 2 - 1 Original Alignment gcCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTCACTGATg acctgtctccaaagtgctgtgtgaatacatctgcactgtcttctttccaggcCACCTTCTGGACTCCTTTGCCTGGTCCGCCTTGTGGGATTCTGGTCTGGACTACCTGCATGGAACAGGACATGGCATTGGATCCTTTTTGAATGTTCATGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCTGATGAGCCCTTGGAAGCGAGCATGATCGTCACTGATggtaagtgtctgtttgcagcgggcagagggcagttttttgttgtttataat Alignment from CESAR gcCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTCACTGATg acctgtctccaaagtgctgtgtgaatacatctgcactgtcttctttccaggcCACCTTCTGGACTCCTTTGCCTGGTCCGCCTTGTGGGATTCTGGTCTGGACTACCTGCATGGAACAGGACATGGCATTGGATCCTTTTTGAATGTTCATGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCTGATGAGCCCTTGGAAGCGAGCATGATCGTCACTGATggtaagtgtctgtttgcagcgggcagagggcagttttttgttgtttataat Alignment from Spaln_aa2Genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTCACTGATG acctgtctccaaagtgctgtgtgaatacatctgcactgtcttctttccagGCCACCTTCTGGACTCCTTTGCCTGGTCCGCCTTGTGGGATTCTGGTCTGGACTACCTGCATGGAACAGGACATGGCATTGGATCCTTTTTGAATGTTCATGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCTGATGAGCCCTTGGAAGCGAGCATGATCGTCACTGATGgtaagtgtctgtttgcagcgggcagagggcagttttttgttgtttataat Alignment from Spaln_nt2Genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTCACTGATG acctgtctccaaagtgctgtgtgaatacatctgcactgtcttctttccagGCCACCTTCTGGACTCCTTTGCCTGGTCCGCCTTGTGGGATTCTGGTCTGGACTACCTGCATGGAACAGGACATGGCATTGGATCCTTTTTGAATGTTCATGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCTGATGAGCCCTTGGAAGCGAGCATGATCGTCACTGATGgtaagtgtctgtttgcagcgggcagagggcagttttttgttgtttataat Alignment from Pairagon GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTCACTGATG acctgtctccaaagtgctgtgtgaatacatctgcactgtcttctttccagGCCACCTTCTGGACTCCTTTGCCTGGTCCGCCTTGTGGGATTCTGGTCTGGACTACCTGCATGGAACAGGACATGGCATTGGATCCTTTTTGAATGTTCATGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCTGATGAGCCCTTGGAAGCGAGCATGATCGTCACTGATGgtaagtgtctgtttgcagcgggcagagggcagttttttgttgtttataat Alignment from Exonerate_protein2genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTCACTGATG acctgtctccaaagtgctgtgtgaatacatctgcactgtcttctttccagGCCACCTTCTGGACTCCTTTGCCTGGTCCGCCTTGTGGGATTCTGGTCTGGACTACCTGCATGGAACAGGACATGGCATTGGATCCTTTTTGAATGTTCATGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCTGATGAGCCCTTGGAAGCGAGCATGATCGTCACTGATGgtaagtgtctgtttgcagcgggcagagggcagttttttgttgtttataat Alignment from Exonerate_coding2genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTCACTGATG acctgtctccaaagtgctgtgtgaatacatctgcactgtcttctttccagGCCACCTTCTGGACTCCTTTGCCTGGTCCGCCTTGTGGGATTCTGGTCTGGACTACCTGCATGGAACAGGACATGGCATTGGATCCTTTTTGAATGTTCATGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCTGATGAGCCCTTGGAAGCGAGCATGATCGTCACTGATGgtaagtgtctgtttgcagcgggcagagggcagttttttgttgtttataat Alignment from GeneWise gtcctggtaatttaggcttctgtgccagacttcctctttcacctctgttag #### Xpnpep1_ID11142_14 --> 1 - 0 Original Alignment gGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacaggGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt Alignment from CESAR gGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacaggGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt Alignment from Spaln_aa2Genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacagGGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt Alignment from Spaln_nt2Genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacagGGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt Alignment from Pairagon GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacagGGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt Alignment from Exonerate_protein2genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacagGGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt Alignment from Exonerate_coding2genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacagGGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt Alignment from GeneWise GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG aaaaggttatttttactggggtaaccgttgttctcccctcctcatcacagGGATGGAACCACAGACGTCACCCGGACCATGCATTTTGGGACCCCCACTGCCTATGAGAAGgtaaggggaggcagaattactgtgctccctgccttcttagaaaggtcatt #### Xpnpep1_ID11149_7 --> 2 - 2 Original Alignment ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat agccaggcaactgacagaaactagttttggccccggggtctgttttgcagggCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCatgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac Alignment from CESAR ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat agccaggcaactgacagaaactagttttggccccggggtctgttttgcagggCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCatgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac Alignment from Spaln_aa2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT agccaggcaactgacagaaactagttttggccccggggtctgttttgcagGGCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCATgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac Alignment from Spaln_nt2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT agccaggcaactgacagaaactagttttggccccggggtctgttttgcagGGCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCATgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac Alignment from Pairagon GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT agccaggcaactgacagaaactagttttggccccggggtctgttttgcagGGCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCATgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac Alignment from Exonerate_protein2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT agccaggcaactgacagaaactagttttggccccggggtctgttttgcagGGCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCATgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac Alignment from Exonerate_coding2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT agccaggcaactgacagaaactagttttggccccggggtctgttttgcagGGCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCATgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac Alignment from GeneWise GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT agccaggcaactgacagaaactagttttggccccggggtctgttttgcagGGCTGTTCAACCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCAATCGTAGGCCTAGAGACGATCATgtaagagtcctctctcacccaggctacccttctcctcacctcgctgttac #### Zdhhc6_ID11625_4 --> 0 - 0 Original Alignment CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga Alignment from CESAR CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga Alignment from Spaln_aa2Genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga Alignment from Spaln_nt2Genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga Alignment from Pairagon CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga Alignment from Exonerate_protein2genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga Alignment from Exonerate_coding2genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga Alignment from GeneWise CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG gttataggcctccacaacaagtctcacattgtttttcttttgactgacagCTTTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCATTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTCTTCATACAGgtctagttctcactcacctctgtctgaaagttgtcatgctattggcctga #### Zfand5_ID4881_4 --> 2 - 1 Original Alignment ttGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAg tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagttGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAggtatgcagaacattagatttcagcccagggaatcaaataatttatttttg Alignment from CESAR ttGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAg tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagttGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAggtatgcagaacattagatttcagcccagggaatcaaataatttatttttg Alignment from Spaln_aa2Genome TTGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAG tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagTTGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAGgtatgcagaacattagatttcagcccagggaatcaaataatttatttttg Alignment from Spaln_nt2Genome TTGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAG tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagTTGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAGgtatgcagaacattagatttcagcccagggaatcaaataatttatttttg Alignment from Pairagon TTGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAG tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagTTGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAGgtatgcagaacattagatttcagcccagggaatcaaataatttatttttg Alignment from Exonerate_protein2genome TTGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAG tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagTTGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAGgtatgcagaacattagatttcagcccagggaatcaaataatttatttttg Alignment from Exonerate_coding2genome TTGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAG tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagTTGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAGgtatgcagaacattagatttcagcccagggaatcaaataatttatttttg Alignment from GeneWise TTGTCACTCAGCCCAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGAAAGAAAGTTGGCCTTACAG tcagctgctgatttccagacaaatttctagcagtgtcctctgctccccagTTGTCACTCAGCCTAGTCCATCAGTTTCTCAGCCCAGTTCTTCTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACAGATGTTTTATGTGTAGGAAGAAAGTTGGCCTTACAGgtatgcagaacattagatttcagcccagggaatcaaataatttatttttg #### Zfp91_ID3457_9 --> 0 - 1 Original Alignment CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAg ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAggtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact Alignment from CESAR CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAg ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAggtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact Alignment from Spaln_aa2Genome CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAG ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAGgtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact Alignment from Spaln_nt2Genome CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAG ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAGgtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact Alignment from Pairagon CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAG ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAGgtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact Alignment from Exonerate_protein2genome CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAG ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAGgtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact Alignment from Exonerate_coding2genome CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAG ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAGgtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact Alignment from GeneWise CACCACATTAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCCTGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAG ggtggagaacttacttatttttttctttgctccctggcttgtccttccagCACCACATCAAATACCAGCATTTGCTGAAAAAAAAATATGTATGTCCCCACCCCTCATGTGGGCGACTCTTCAGGCTCCAGAAACAACTTCTGCGGCATGCAAAGCATCATACAGgtatgtttctaagtataagaggattaccaaatagctaagcaacctgcact #### Zfyve27_ID8421_3 --> 2 - 2 Original Alignment gtGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCtt gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctaggtGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCttgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca Alignment from CESAR gtGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCtt gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctaggtGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCttgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca Alignment from Spaln_aa2Genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctagGTGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTTgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca Alignment from Spaln_nt2Genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctagGTGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTTgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca Alignment from Pairagon GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctagGTGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTTgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca Alignment from Exonerate_protein2genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctagGTGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTTgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca Alignment from Exonerate_coding2genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctagGTGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTTgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca Alignment from GeneWise GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gggcatcattgggcatgtgcttgcgcctttcctttttctgccccttctagGTGCATGGTACTCCATGGGTGCCTTGATGATCTCAGTCCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCACAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTTgtgagtgttgcagggaggcccggaatgtctgggagcaagccagcgccaca #### Zfyve27_ID8428_10 --> 2 - 0 Original Alignment ggAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagcacttttcttttgggggggcaccagggAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc Alignment from CESAR ggAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagcacttttcttttgggggggcaccagggAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc Alignment from Spaln_aa2Genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagcacttttcttttgggggggcaccagGGAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc Alignment from Spaln_nt2Genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagcacttttcttttgggggggcaccagGGAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc Alignment from Pairagon GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagcacttttcttttgggggggcaccagGGAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc Alignment from Exonerate_protein2genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagcacttttcttttgggggggcaccagGGAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc Alignment from Exonerate_coding2genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagcacttttcttttgggggggcaccagGGAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc Alignment from GeneWise ------------------------GGGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG ttgatcagcctgggctggatcgtagCACTTTTCTTTTGGGGGGGCACCAGGGAATTGTGCAGGCTGTGCCGCTACGTTCTCTGTGCTGAAGAAGAGGgtttgagtgctcctgtttgtcgggcagtgtgctgtgactggcactgatgc #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG actcttaggccaccaggggtcagaggactgccccccatatgtctcagtagGGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCGGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtaagagggtgtggggatgcacctaagcgtcttgaccctttctgtgacac #### Zp1_ID3062_10 --> 0 - 1 Original Alignment GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAagtaagactggggtatttgccttttgatccattgttacgttgaggctaact Alignment from CESAR GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAagtaagactggggtatttgccttttgatccattgttacgttgaggctaact Alignment from Spaln_aa2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAAgtaagactggggtatttgccttttgatccattgttacgttgaggctaact Alignment from Spaln_nt2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAAgtaagactggggtatttgccttttgatccattgttacgttgaggctaact Alignment from Pairagon GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAAgtaagactggggtatttgccttttgatccattgttacgttgaggctaact Alignment from Exonerate_protein2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAAgtaagactggggtatttgccttttgatccattgttacgttgaggctaact Alignment from Exonerate_coding2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAAgtaagactggggtatttgccttttgatccattgttacgttgaggctaact Alignment from GeneWise GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA gccagcatagctgtacctaggccggcccgaaaattactttctctttctagGTCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAAgtaagactggggtatttgccttttgatccattgttacgttgaggctaact #### Zp1_ID3068_4 --> 2 - 1 Original Alignment gtACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAg cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacaggcACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCagtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc Alignment from CESAR gtACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAg cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacaggcACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCagtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc Alignment from Spaln_aa2Genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacagGCACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc Alignment from Spaln_nt2Genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacagGCACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc Alignment from Pairagon GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacagGCACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc Alignment from Exonerate_protein2genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacagGCACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc Alignment from Exonerate_coding2genome GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacagGCACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc Alignment from GeneWise GTACCCATCTGCCCCAGGAGCGGTGCCAGGTAGCCTCCGGGCACATCCCATGCATGGTAAATGGAAGTTCCAAGGAAACCTGTCAGCAGGCTGGCTGCTGCTATGACAGTACCAAAGAAGAGCCCTGTTACTATGGCAACACAG cctgcgagctataaacagtcatttccaccgtgccccaaacctcttcacagGCACCCATCTGCCCCAAGAGTGGTGCCAGGTAGCCTCTGGGCACATCCCATGCATGGTGAATGGAAGTTCCAAGGAAGCCTGTCAGCAGGCTGGCTGTTGCTATGACAGTACCAAAGAAGAGCCCTGCTACTATGGCAACACCAgtgagtcctcttatcccaagcatgcccttgccacagcagggcaagtctcc #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta #### Zp1_ID3070_2 --> 2 - 0 Original Alignment atGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagatGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct Alignment from CESAR atGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagatGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct Alignment from Spaln_aa2Genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagATGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct Alignment from Spaln_nt2Genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagATGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCT---CTGATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct Alignment from Pairagon ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagATGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCT---CTGATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct Alignment from Exonerate_protein2genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagATGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct Alignment from Exonerate_coding2genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagATGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct Alignment from GeneWise ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccccccagcacctgaggttccctccgtgccctgtgtttccacctcagATGAATTTGGGAATTGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAAGGCTGCCACGTTCTAGAGAAGgtaactagaggcacatatgaggacagaggtagattgtcctaactgcccct ####