#### 1110059E24Rik_ID4914_2 --> 0 - 2 Original Alignment AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGtg tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGtggtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg Alignment from CESAR AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGtg tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGtggtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg Alignment from Spaln_aa2Genome AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTG tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGgtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg Alignment from Spaln_nt2Genome AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTG tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGgtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg Alignment from Pairagon AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTG tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGgtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg Alignment from Exonerate_protein2genome AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTG tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGgtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg Alignment from Exonerate_coding2genome AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTG tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGgtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg Alignment from GeneWise AAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTG tactgacttgtggatgaaactaccaattttcttttaaaaattctgtgtagAAAATTAATGCAAAACTTCATGATGGAGTGTGTCAGCGCTGCAAAGAAGTTCTTGAGTGGCGTGTAAAGTACAGCAAATACAAGCCACTGTCAAAGCCTAAGAAGTGgtaagtcccagttcttaaagtctagttgcttaaattctagttgtgatctg #### 1700017D01Rik_ID3126_2 --> 0 - 0 Original Alignment GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga Alignment from CESAR GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga Alignment from Spaln_aa2Genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga Alignment from Spaln_nt2Genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga Alignment from Pairagon GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga Alignment from Exonerate_protein2genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga Alignment from Exonerate_coding2genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga Alignment from GeneWise GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT aaccttgagcagagtcactttggataattctttctcttgtgatggttcagGGTGCACAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAATATGGCATTGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaagtgaaccgtggccattggtgatttctgtctgtttgattctagctga #### 1700019N19Rik_ID12797_3 --> 2 - 1 Original Alignment gcTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGg agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcaggcTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTggtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc Alignment from CESAR gcTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGg agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcaggcTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTggtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc Alignment from Spaln_aa2Genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcagGCTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTGgtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc Alignment from Spaln_nt2Genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcagGCTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACAG---GGACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTGgtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc Alignment from Pairagon GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcagGCTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACA---GGGACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTGgtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc Alignment from Exonerate_protein2genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcagGCTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTGgtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc Alignment from Exonerate_coding2genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcagGCTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTGgtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc Alignment from GeneWise GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agactttagcctgagtgctcactgcctgtactttggtgctttgtccgcagGCTTCATACCATGGCTCAGTTGCCAGGAAAGCCCCAGCGAGGACCGCATGAATCCCTGTGTGAAATTGTTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGCTCTTTGGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAGGACACAGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTTACTCTTGgtatggcccttgccaaaccctcaaatcacccatgtgagatctcagcagcc #### 1700019N19Rik_ID12799_2 --> 0 - 1 Original Alignment AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCg cctaagaacacttcctggctctttgccttgcgcttttccatgttcctcagAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTggtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat Alignment from CESAR AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCg cctaagaacacttcctggctctttgccttgcgcttttccatgttcctcagAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTggtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat Alignment from Spaln_aa2Genome AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG cctaagaacacttcctggctctttgccttgcgcttttccatgttcctcagAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTGgtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat Alignment from Spaln_nt2Genome AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG cctaagaacacttcctggctctttgccttgcgcttttccatgttcctcagAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTGgtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat Alignment from Pairagon AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG cctaagaacacttcctggctctttgccttgcgcttttccatgttcctcagAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTGgtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat Alignment from Exonerate_protein2genome GAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG cctaagaacacttcctggctctttgccttgcgcttttccatgttcctCAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTGgtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat Alignment from Exonerate_coding2genome GAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG cctaagaacacttcctggctctttgccttgcgcttttccatgttcctCAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTGgtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat Alignment from GeneWise CTCAAGCCAGCGGAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG cctaagaacacttcctggctctttgccttgcgcttTTCCATGTTCCTCAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGGTACTGTGgtaagtagtagtcatcacagggctcctggcctctacttgtcttggatcat #### 1700025F22Rik_ID3134_2 --> 0 - 0 Original Alignment TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa Alignment from CESAR TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa Alignment from Spaln_aa2Genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa Alignment from Spaln_nt2Genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa Alignment from Pairagon TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa Alignment from Exonerate_protein2genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa Alignment from Exonerate_coding2genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa Alignment from GeneWise TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacataaacactgggcaataacaaatgtatttgttttcctttttaaagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACGgtaggacagaagacttagagataagttctgagaggtaggaggtgcgagaa #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGGTGAgtagagccctgtcgaggacctggggtggagcgatataatagaatat #### 1700055N04Rik_ID229_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtaggaAGTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTggtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtaggaAGTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTggtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtagGAAGTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTGgtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtagGAAGTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTGgtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtagGAAGTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTGgtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtagGAAGTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTGgtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtagGAAGTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTGgtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc Alignment from GeneWise TCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG atgcctctgtctaatcctagctgaccaggcttgtggcttctgtcctgtaggaagTCCTCGGGTGGGTAAGATTGTTATGCCTGCTGCAGCCAAACAGCTGACGCCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTCCTATGTGGATGACAACTGTGACCCTCAGACAGTGGCCAACCGTGTCGCCTGGTTCTGCTATTTCAACGCTGGCCAGACCTGTGTGGCCCCTGATTATATTCTGTGTAGCCAGGAAATGCAGGAGCAGTTGGTGCCTGCACTGCAGAATGCCATCATGCGTTCCTATGGAGATAACCCACAAACCTCCCCCAACTTGGGGAGAATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGTGTGGCCATCGGTGGTCAGAGTGATGAGGGAGAGCGCTACATTGgtactcctcctgtccctgggcctgacacacagcccacctgggctgagacc #### 1700055N04Rik_ID230_8 --> 2 - 0 Original Alignment ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagttCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca Alignment from CESAR ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagttCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca Alignment from Spaln_aa2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca Alignment from Spaln_nt2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca Alignment from Pairagon CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca Alignment from Exonerate_protein2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca Alignment from Exonerate_coding2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca Alignment from GeneWise CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG gttttggattgcattccacctcaagctaaaactttttttttcttttatagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCTGTGATACAGGAGGAGATCTTTGGACCCCTCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCACTATATGTCTATTCAAACAATGCAGAGgtcagggctgttgccaacagtaggctatggcatcagaggcagcagaggca #### 1700123I01Rik_ID1491_3 --> 0 - 1 Original Alignment GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCt aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTtgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga Alignment from CESAR GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCt aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTtgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga Alignment from Spaln_aa2Genome GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTTgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga Alignment from Spaln_nt2Genome GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTTgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga Alignment from Pairagon GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTTgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga Alignment from Exonerate_protein2genome GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTTgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga Alignment from Exonerate_coding2genome GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTTgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga Alignment from GeneWise GATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT aaagaaaagtccctttaacagtcattgaatctctcatgtgttgcttttagGATTCTATCCGTGCAGTCTTGGCAAACATGGACAGCCTGCAACCTTTTGTTACAGAACACTTCATTGTATTTCCTTgtaagattccttttttggttctttccccacccagtgcgctgaaaggtgga #### 1700123I01Rik_ID1492_4 --> 2 - 1 Original Alignment atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg gtcacacacatgcatccccttcttcccctggattttcttcttccttccagatAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCggtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt Alignment from CESAR atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg gtcacacacatgcatccccttcttcccctggattttcttcttccttccagatAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCggtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt Alignment from Spaln_aa2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG gtcacacacatgcatccccttcttcccctggattttcttcttccttccagATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCGgtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt Alignment from Spaln_nt2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG gtcacacacatgcatccccttcttcccctggattttcttcttccttccagATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCGgtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt Alignment from Pairagon ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG gtcacacacatgcatccccttcttcccctggattttcttcttccttccagATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCGgtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt Alignment from Exonerate_protein2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG gtcacacacatgcatccccttcttcccctggattttcttcttccttccagATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCGgtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt Alignment from Exonerate_coding2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG gtcacacacatgcatccccttcttcccctggattttcttcttccttccagATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCGgtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt Alignment from GeneWise ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG gtcacacacatgcatccccttcttcccctggattttcttcttccttccagATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCCGgtaagtaatgatgaaacagagacagttgatgggcaggactgtataacagt #### 1700123I01Rik_ID1494_6 --> 0 - 2 Original Alignment GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACaggtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc Alignment from CESAR GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACaggtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc Alignment from Spaln_aa2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc Alignment from Spaln_nt2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc Alignment from Pairagon GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc Alignment from Exonerate_protein2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc Alignment from Exonerate_coding2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc Alignment from GeneWise GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ggagtgactctagaatagaggggtgtttagtgattctgtgtcttccacagGTCCTAGCTGAGACAGAAGCAGAAGAAGCCACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaagtggtggagagatctttgtcacctattgctgtttgttgactctgcc #### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtaggTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAggtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from CESAR gTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtaggTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAggtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Spaln_aa2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Spaln_nt2Genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Pairagon GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Exonerate_protein2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from Exonerate_coding2genome GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG ttggttgacgaagtgagaccttttcttgaaccgtttcttccctgttgtagGTCCAGTGCCCGTGCCAACATCACACTGTCTGGGAAGAAGCGCAGAAAACTCTTGCAGCAGATCCGACTTGCCCAGAAACAAAAAGCAGCCATGGAAGgtgagccttggggacagaggctaccaaaaatgagtctggatcttccctta #### 2410127L17Rik_ID4446_2 --> 1 - 0 Original Alignment cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct Alignment from CESAR cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct Alignment from Spaln_aa2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct Alignment from Spaln_nt2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct Alignment from Pairagon CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct Alignment from Exonerate_protein2genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct Alignment from Exonerate_coding2genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct Alignment from GeneWise CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT aatgagagagttctattgccaaataaaatcatgcttttcttcctcattagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCGCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtatgcgacattgtttctattgatcttcccagcaagctttaattagggct #### 4430402I18Rik_ID6181_9 --> 0 - 2 Original Alignment GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAag aatcgcaacccacgcaagtgaaaaataagtttttatttctttgtatgaagGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAaggtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca Alignment from CESAR GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAag aatcgcaacccacgcaagtgaaaaataagtttttatttctttgtatgaagGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAaggtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca Alignment from Spaln_aa2Genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG aatcgcaacccacgcaagtgaaaaataagtttttatttctttgtatgaagGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAAGgtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca Alignment from Spaln_nt2Genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG aatcgcaacccacgcaagtgaaaaataagtttttatttctttgtatgaagGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAAGgtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca Alignment from Pairagon GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG aatcgcaacccacgcaagtgaaaaataagtttttatttctttgtatgaagGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAAGgtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca Alignment from Exonerate_protein2genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG aatcgcaacccacgcaagtgaaaaataagtttttatttctttgtatgaagGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAAGgtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca Alignment from Exonerate_coding2genome CTTCTCTTGACAGCCTGGAGGCGAACATAAAGGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG aatcgcaacccacgcaagTGAAAAATAAGTTTTTATTTCTTTGTATGAAGGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAAGgtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca Alignment from GeneWise CTTCTCTTGACAGCCTGGAGGCGAACATAAAGGTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG aatcgcaacccacgcaagTGAAAAATAAGTTTTTATTTCTTTGTATGAAGGTCATCCGAGAGCCGGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCTTCACTCAGTCATCAAGGAGATGCCAGTTTGCACACAGAAACCTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTTTGAATCAACCTCTTCTCCAAGAAAGgtgagaagccagcacctattctcttgccccaagagcctcaggttctgtca #### 4430402I18Rik_ID6188_2 --> 0 - 1 Original Alignment GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa catttaagtaaatgtttgcacatttcttacttatgatcttctttctgcagGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAagtaagtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat Alignment from CESAR GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa catttaagtaaatgtttgcacatttcttacttatgatcttctttctgcagGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAagtaagtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat Alignment from Spaln_aa2Genome ------AGATTTGTAAAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA catttaagtaaatgtttgcacatttcttacttATGATCTTCTTTCTGCAGGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtaagtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat Alignment from Spaln_nt2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA catttaagtaaatgtttgcacatttcttacttatgatcttctttctgcagGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtaagtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat Alignment from Pairagon GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA catttaagtaaatgtttgcacatttcttacttatgatcttctttctgcagGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtaagtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat Alignment from Exonerate_protein2genome TTTGTAAAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA catttaagtaaatgtttgcacatttcttacttatgatcttcTTTCTGCAGGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtaagtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat Alignment from Exonerate_coding2genome TTTGTAAAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA catttaagtaaatgtttgcacatttcttacttatgatcttcTTTCTGCAGGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAgtaagtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat Alignment from GeneWise AGATTTGTAAAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAAGCTT ttaagtaaatgtttgcacatttcttacttatgatcttc---TTTCTGCAGGGATTTGAAGAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTAGAAAGTAAgtacttaggagaaaaaaaaaaagactcctgtttaattcgcagttat #### 9130011E15Rik_ID9640_21 --> 0 - 1 Original Alignment ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGggtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat Alignment from CESAR ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGggtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat Alignment from Spaln_aa2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat Alignment from Spaln_nt2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat Alignment from Pairagon ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat Alignment from Exonerate_protein2genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat Alignment from Exonerate_coding2genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat Alignment from GeneWise ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tctgatcttcccatcttgatgcatgggtaggatcgcactcccttcctcagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACGTTCCTGCCAACCCCCAGCAGCTACGACGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtaaaatcttctgatcttttattcttgtctttcttatttccaggagggat #### 9130011E15Rik_ID9677_4 --> 0 - 0 Original Alignment ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt Alignment from CESAR ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt Alignment from Spaln_aa2Genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt Alignment from Spaln_nt2Genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt Alignment from Pairagon ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt Alignment from Exonerate_protein2genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt Alignment from Exonerate_coding2genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt Alignment from GeneWise ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG tttcacacataaacccctagtccagagaccagcctccactctccccacagACCTTGTGTACACTTATTCGAGGCGTCCACCAAAAGAATAAATCTACATCTGGATTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAGCTGTGCATGAAGgtaagatgccagatgtgggtatgactgaaaagctgtgtgacagcttacgt #### 9130011E15Rik_ID9678_3 --> 0 - 0 Original Alignment GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta Alignment from CESAR GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta Alignment from Spaln_aa2Genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta Alignment from Spaln_nt2Genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta Alignment from Pairagon GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta Alignment from Exonerate_protein2genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta Alignment from Exonerate_coding2genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta Alignment from GeneWise GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgaatgctgccctgtcagtccgctcaaccaaccatgtcttctttcccagGTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAAGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAATGCTTTACAGgtggggtctgggagtcaggcagttctgagtaatagctgcacccacctgta #### A1cf_ID6645_7 --> 0 - 1 Original Alignment GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAg tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGTG---AACACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAggtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt Alignment from CESAR GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAg tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGTGAAC---ACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAggtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt Alignment from Spaln_aa2Genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGTGAAC---ACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAGgtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt Alignment from Spaln_nt2Genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGT---GAACACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAGgtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt Alignment from Pairagon GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGTGA---ACACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAGgtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt Alignment from Exonerate_protein2genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGTGAAC---ACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAGgtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt Alignment from Exonerate_coding2genome GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGTGAAC---ACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAGgtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt Alignment from GeneWise GTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATACACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCCCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAG tttgatggatgacttctgcagcctcagcttcctattcatcctcacatgagGTGCTGGATGGTTCCCCAATAGAAGTGACATTAGCCAAGCCAGTGGACAAGGACAGTTATGTGAAC---ACCCGGGGAGCAGGTGGCAGGAACAGCATGCTGCAAGGAGAGTACACCTACCCTCTGAGCCATGTTTATGACCCTACAACAACCTACCTTGGAGCACCTGTCTTCTATACCCCGCAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCATCAGGACCCCTTCTGTCAGAGgtatgactacctagctcttgtctttcaacagctcctaaatttcatgtttt #### A630007B06Rik_ID12183_14 --> 1 - 0 Original Alignment aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttaggATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt Alignment from CESAR aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttaggATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt Alignment from Spaln_aa2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttagGATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt Alignment from Spaln_nt2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttagGATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt Alignment from Pairagon AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttagGATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt Alignment from Exonerate_protein2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttagGATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt Alignment from Exonerate_coding2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttagGATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt Alignment from GeneWise AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccccaatgttcctatgctgcaagcacccacttgtatcttttctttgttagGATAATTCAGAGTTACATTCTACGAGAGGAGTCAGGTACTCTTTCCTCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCCTTGGAAATCAACCGAAAATTACAGGCTGTATTGGAAGCTACATTGCTAAAGAATATTACTTTGAAGgtaatcacttcagtgtaacaatgtttaagtatattttgtggctttctttt #### A630007B06Rik_ID12186_11 --> 0 - 1 Original Alignment GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAggtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct Alignment from CESAR GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAggtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct Alignment from Spaln_aa2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct Alignment from Spaln_nt2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct Alignment from Pairagon GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct Alignment from Exonerate_protein2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct Alignment from Exonerate_coding2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct Alignment from GeneWise GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG gaaatcaaactgtgggtttacttgtcaaaccatttttaatattttgacagGAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCACAGACCGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACACAGAGGCACAAACATGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgagtctgtgttgcttgtctttctgagagctctagtcaggtgcactgct #### A630007B06Rik_ID12189_8 --> 0 - 0 Original Alignment ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from CESAR ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Spaln_aa2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Spaln_nt2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Pairagon ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Exonerate_protein2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from Exonerate_coding2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag Alignment from GeneWise ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaataatgccccctatgtcccttggcaagcccaagctccacctgccacagATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAACTACAGACATTGAGAACAAAGgtaagtaaccctcattcctaactcacgtggggtggacactgttagtttag #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagggtttgtttgttgtccaagtaaaagctctctctctctctctctctagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAAgtaagtttaattcatccacactccctaatacatccagtttgatggggctg #### A630007B06Rik_ID12192_5 --> 0 - 0 Original Alignment GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc Alignment from CESAR GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc Alignment from Spaln_aa2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc Alignment from Spaln_nt2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc Alignment from Pairagon GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc Alignment from Exonerate_protein2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc Alignment from Exonerate_coding2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc Alignment from GeneWise GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gatagtatcaattactctggaatttgcggaccctggccttgtcttaccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAGGAGGAGATGAACTCTCAAGTCATTAAAGTGAAGTGGGCACAAAACAAGTTAAAAGCTGAAATGGACTCCCACAAGgtaagtgttgctatactacaggtagtggtgagtgctaagagcaagtcagc #### AI846148_ID2141_5 --> 2 - 1 Original Alignment acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagatCCTCCATCCCCT---GCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACAC---ACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAggtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat Alignment from CESAR acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagatCCTCCATCCCCT---GCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACAC---ACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAggtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat Alignment from Spaln_aa2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagATCCTCCATCCCCT---GCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACAC---ACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAGgtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat Alignment from Spaln_nt2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagATCCTCCATCCCCTG---CACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACA---CACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAGgtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat Alignment from Pairagon ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagATCCTCCATCCCCTG---CACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACA---CACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAGgtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat Alignment from Exonerate_protein2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagATCCTCCATCCCCT---GCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACAC---ACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAGgtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat Alignment from Exonerate_coding2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagATCCTCCATCCCCT---GCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACAC---ACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAGgtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat Alignment from GeneWise ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG atctgctgtcatcttctgctcatacataagttgaattcttttttctaaagATCCTCCATCCCCT---GCACCCACAGAGACATTTGCTGCACCAGCTGAAGTCCGACAC---ACTGATGGCAGCTTCCCCCCTGGCTTTGTCCTCCAGCTCTTCTCCCACAGTCAACTCAGGACCACTGACTGTAAGGACTCTTCTAAGGAAAGCAGAGCCGCAGAGGGCCTACCCCTGCCACAAAATCCCTCATCAGgtgagtcctgctaggagggaacagtgaagcatgctgagttcctggatcat #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagttACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAggtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagttACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAggtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACatgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_coding2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc #### Abcc2_ID8824_8 --> 0 - 2 Original Alignment GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTCAAAAAAG---------AAATCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGgagtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc Alignment from CESAR GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTCA---------AAAAAGAAATCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGgagtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc Alignment from Spaln_aa2Genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTCA---------AAAAAGAAATCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGGAgtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc Alignment from Spaln_nt2Genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTC---------AAAAAAGAAATCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGGAgtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc Alignment from Pairagon GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTC---------AAAAAAGAAATCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGGAgtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc Alignment from Exonerate_protein2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTCA---------AAAAAGAAATCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGGAgtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc Alignment from Exonerate_coding2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTCA---------AAAAAGAAATCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGGAgtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc Alignment from GeneWise GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaagccagtggacatgaccattcttctgttctccacagGAGGACTCAAAAAAGAAA---------TCTGAGGCCACCAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTGATCCTAAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTCCTGGAgtattggcacaggacttgcggcccccttcttccagctttcttcaagttcc #### Abcc2_ID8829_13 --> 0 - 0 Original Alignment GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta Alignment from CESAR GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta Alignment from Spaln_aa2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta Alignment from Spaln_nt2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta Alignment from Pairagon GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta Alignment from Exonerate_protein2genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta Alignment from Exonerate_coding2genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta Alignment from GeneWise GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG agattgttgcaaaaggtatttggaccatcttactctcatgtacaaaacagGTGTCTGTGATTACATTTTCCGTTTATGTCCTGGTGGATAGCCAAAATGTTTCAAATGCAGAGCAGGCTTTCACCTCTATCACCCTCTTCAATATCCTGCACTTCTCTCTAGCCATGCTTCCCATAGTCATCTCTTCAGTCATCCAGgtgagtgagattgcactcactgatgctcaatgggcttacagtgaagatta #### Abcc2_ID8833_17 --> 0 - 0 Original Alignment GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt Alignment from CESAR GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt Alignment from Spaln_aa2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt Alignment from Spaln_nt2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt Alignment from Pairagon GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt Alignment from Exonerate_protein2genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt Alignment from Exonerate_coding2genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt Alignment from GeneWise GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG cttccactctgcaagggtgactgccagactcttcttctccattctttcagGGCTCCATAGCCTATGTCCCTCAGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGGTCAGAATATGATGAAAAGAAGTATCAGCGAGTTATCGACGCATGTGCT---CTCCCAGACTTGGAGATGTTGCCTGGCGGAGACATGGCTGAGATTGGGGAGAAGgtaagtggggtgtggaaccttgaagaaaagcagtatcttagttcgggttt #### Abcc2_ID8834_18 --> 0 - 0 Original Alignment GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtaagggtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta Alignment from CESAR GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtaagggtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta Alignment from Spaln_aa2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAGACTCGG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGGTAAGGgtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta Alignment from Spaln_nt2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtaagggtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta Alignment from Pairagon GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtaagggtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta Alignment from Exonerate_protein2genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtaagggtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta Alignment from Exonerate_coding2genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtaagggtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta Alignment from GeneWise GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcataggagtgttgggttatctgttctcccccaccctgcagGGTATAAATCTCAGTGGTGGTCAAAAGCACCGAGTCAGCCTGGCCCGGGGTGCCTATCAAGATGCAGACATCTATATTCTAGATGACCCACTCTCCGCTGTAGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtaagggtgacagatgtttgtgtgtgtgtgtgtctgtgtgtgtgtgtgta #### Abcc2_ID8838_22 --> 0 - 1 Original Alignment GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAggtgaggccagtggctatgatagacatttatgtccgggccaattcctacag Alignment from CESAR GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAggtgaggccagtggctatgatagacatttatgtccgggccaattcctacag Alignment from Spaln_aa2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAGgtgaggccagtggctatgatagacatttatgtccgggccaattcctacag Alignment from Spaln_nt2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAGgtgaggccagtggctatgatagacatttatgtccgggccaattcctacag Alignment from Pairagon GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAGgtgaggccagtggctatgatagacatttatgtccgggccaattcctacag Alignment from Exonerate_protein2genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAGgtgaggccagtggctatgatagacatttatgtccgggccaattcctacag Alignment from Exonerate_coding2genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAGgtgaggccagtggctatgatagacatttatgtccgggccaattcctacag Alignment from GeneWise GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG taattctctacctgaagcgctcaagggttttaacaaccattgttttgcagGTAAAGTTCTCTATCTACCTGAAGTATCTGCAGGCAGTAGGATGGTGGTCCCTGCTCTTCATTATCATCTTCTACGTATTGAACTATGTGGCTTTCATTGGCACTAATCTCTGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACTGACAATTCACCTTCTCAGAGGGACATGAGAATCAGGGTCTTTGGAGCTCTGGGAATAGCACAAGgtgaggccagtggctatgatagacatttatgtccgggccaattcctacag #### Abcc2_ID8841_25 --> 0 - 2 Original Alignment GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACcg ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGT---CTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACcggttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat Alignment from CESAR GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACcg ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGT---CTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACcggttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat Alignment from Spaln_aa2Genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGT---CTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat Alignment from Spaln_nt2Genome TTTATGTGGCTACATCCCGCCAGCTGAGACGG-CTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGTCTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat Alignment from Pairagon GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGT---CTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat Alignment from Exonerate_protein2genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGT---CTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat Alignment from Exonerate_coding2genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGT---CTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat Alignment from GeneWise GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG ggactaactcaggggactatcactaacttaactgttgttttcttctttagGTGTTTTATGTGGCTACATCCCGT---CTGAGACGGCTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTTAGCGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCCTTTGAACACCAGCAAAGATTTCTAGCAAACAGCGAGAAGCAGATAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgttaatctcccttaagcactcgcctaaatggatgtttctgatctctacat #### Acsl5_ID11598_3 --> 2 - 0 Original Alignment acAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagacAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc Alignment from CESAR acAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagacAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc Alignment from Spaln_aa2Genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagACAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc Alignment from Spaln_nt2Genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagACAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc Alignment from Pairagon ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagACAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc Alignment from Exonerate_protein2genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagACAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc Alignment from Exonerate_coding2genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagACAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc Alignment from GeneWise ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tgatccaaatgattcacagaatcagttattaataatttatcttattctagACAATGGGCCTTGCTTGGGGTACAGAAAGCCAAACCAGCCCTACAAGTGGATCTCCTATAAACAGgtaaggcaacaaactcatgctgtagcagtgtcctctgcctgcctatgcgc #### Acsl5_ID11603_8 --> 0 - 1 Original Alignment CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAggtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt Alignment from CESAR CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAggtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt Alignment from Spaln_aa2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAGgtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt Alignment from Spaln_nt2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAGgtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt Alignment from Pairagon CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAGgtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt Alignment from Exonerate_protein2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAGgtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt Alignment from Exonerate_coding2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAGgtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt Alignment from GeneWise CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtgggctatcttacaactttcttcccacagCCTCCAAAGCCAGAGGATCTGAGTGTGATCTGTTTCACCAGTGGAACTACAGgtgagtgcccagaggtcccagggagccagaaacaaggctaagccatgagt #### Acsl5_ID11604_9 --> 2 - 0 Original Alignment gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacaggtGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat Alignment from CESAR gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacaggtGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat Alignment from Spaln_aa2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacagGTGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat Alignment from Spaln_nt2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacagGTGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat Alignment from Pairagon GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacagGTGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat Alignment from Exonerate_protein2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacagGTGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat Alignment from Exonerate_coding2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacagGTGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat Alignment from GeneWise GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG acatgtaagccgcactgttgttctttctgtccccccccaccccccaacagGTGATCCTGAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTGAAATTTTTGGAGgtgggtagtaaaggacaggcccttgctataatgtgacttggctataggat #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact #### Acta2_ID6912_2 --> 0 - 0 Original Alignment GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca Alignment from CESAR GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca Alignment from Spaln_aa2Genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca Alignment from Spaln_nt2Genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca Alignment from Pairagon GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca Alignment from Exonerate_protein2genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca Alignment from Exonerate_coding2genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca Alignment from GeneWise GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG ttgatacatttcagggaagcactgacttcctgttccccttctctccacagGGAGTAATGGTAGGCATGGGCCAAAAAGACAGCTATCTGGGGGATGAAGCCCAGAGCAAGAGGGGGATCCTGATGCTAAAGTATCCAATAGAACATGGCATCATCACAAACTGGGATGACATGGAAAAGgtaagacctcaggtaatcaaagccttgcatcgccatctggcaagaagcca #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagcTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from CESAR cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagcTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Pairagon CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gcacatgcctgcagtgaaccggggcctggactgaagactttgatttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTTATCCACCGGCACCGGCCAGACCTTATTGACTATGCCAAGCTGCGCAAGgttagttgcacctctacaactcacaactctatagtctctgccctcagctg #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagaaATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAggtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagaaATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAggtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG ggtctggacacaaaggtcttcaggccaatcctatgtcttcttttctgcagAAATTGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCTGTAGAAGgtgagttgatgaggagtacatgaacagggccagctcaggctcttacccac #### Actr1a_ID9870_10 --> 0 - 2 Original Alignment ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCgggtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from CESAR ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCgggtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Spaln_aa2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Spaln_nt2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Pairagon ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Exonerate_protein2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from Exonerate_coding2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat Alignment from GeneWise ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gatatcagcaccccaggagagactgtactgagccgttttcactgctgcagATATCTGCACCCCAGGAGCGACTGTATTCCACATGGATCGGgtaataagcccttctaataggagtaggatgggaagtaagcttttgatcat #### Actr1a_ID9876_4 --> 0 - 0 Original Alignment GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg Alignment from CESAR GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg Alignment from Spaln_aa2Genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg Alignment from Spaln_nt2Genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg Alignment from Pairagon GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg Alignment from Exonerate_protein2genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg Alignment from Exonerate_coding2genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg Alignment from GeneWise GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG gatgccagtgggagtctgacagtgctacctagcactccctctgtccacagGAGCACCGGGGGCTGCTATCAATCCGTTACCCCATGGAGCATGGCATCGTCAAGGACTGGAATGACATAGAACGGATCTGGCAATATGTCTACTCTAAGGACCAGCTGCAGACTTTTTCAGAGGAGgtgagaccctgtatgtaggacacccctttgcaggatgctctgttaggttg #### Acy3_ID248_2 --> 1 - 0 Original Alignment tTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagtTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca Alignment from CESAR tTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagtTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca Alignment from Spaln_aa2Genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagTTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca Alignment from Spaln_nt2Genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagTTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca Alignment from Pairagon TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagTTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca Alignment from Exonerate_protein2genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagTTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca Alignment from Exonerate_coding2genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagTTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca Alignment from GeneWise TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgatcgggactgatgtccccttccctgtctgtccccttccagTTCCAGTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGCTAAATCAGCTGCTGGGTCCCAAGGGTACAGGGAAGGCTTTTGACTTTACCCTAGACCTGCATAACACTTCAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCATCTGTGCCAATACCTACAGgtaaggggggaggagccaagatggccgaataggaacagctctggtctaca #### Add3_ID11214_6 --> 0 - 0 Original Alignment GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac Alignment from CESAR GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac Alignment from Spaln_aa2Genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac Alignment from Spaln_nt2Genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac Alignment from Pairagon GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac Alignment from Exonerate_protein2genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac Alignment from Exonerate_coding2genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac Alignment from GeneWise GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG tgatggtgatgtgctgagactatgtatgtgtatctcgatttttcttacagGTGTCATCAATGAAATGTGGGATCCTTCTAATTTCCCAAGAGTCTATCATCTTGGGAGACGTAGCCTATTATGCCTACCAGGGGTCACTTGATGAGGATGAAGAAAGAATTGAACTTCAGAAAGTCCTGGGTTCAGGCTGTAAGgtgagaactgctctgtaagggctttctctgttgctgctgctacccttcac #### Add3_ID11215_7 --> 0 - 0 Original Alignment GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from CESAR GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Spaln_aa2Genome GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Spaln_nt2Genome GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Pairagon GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Exonerate_protein2genome GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from Exonerate_coding2genome GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt Alignment from GeneWise GTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcccacggttgttcaaggtagctccctttcattcctttcagGTGCTTGTCCTCAGGAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATTTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagtcccaaccctaccctgttttctattgctctacatgagccactagt #### Add3_ID11218_10 --> 0 - 0 Original Alignment TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc Alignment from CESAR TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc Alignment from Spaln_aa2Genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc Alignment from Spaln_nt2Genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc Alignment from Pairagon TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc Alignment from Exonerate_protein2genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc Alignment from Exonerate_coding2genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc Alignment from GeneWise TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG cttctttgatgcaaagcttcaccctagaaatgcttatgttttttctttagTGGATGAAAGCAGAAGATTCCTCTAAAGTCAGTAGTGGGACACCAATCAAAATTGAAGACCCCAATCAGTTCGTTCCTTTAAACACAAACCCGATGGAGGTGCTAGAAAAGAGAAATAAAgtatgcgacagctctttactcgtaagagacacttcttgaaggatactttc #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTgggtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTgggtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCG---TGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGG---GCCGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTGG gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gccaggctctcttcctagcttctgttgatgagagctctctctacccacagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCTGGGCCGCCGTGGgtaagtatcttggcctccccaccatgtggtcatactcagtcttttctggg #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAggtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAggtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagagagttttttttctaaaccactgtcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACCCCACGAAGCACCATGGTTAAGCTACAGGCTGAACAACAGAGAATCTCCTTCCCCGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCTAGCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtacgcggactaaatctgcacttagcacttgagacataacgagtcagccc #### Afap1l2_ID12249_14 --> 1 - 0 Original Alignment aCTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagaCTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga Alignment from CESAR aCTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagaCTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga Alignment from Spaln_aa2Genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagACTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga Alignment from Spaln_nt2Genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagACTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga Alignment from Pairagon ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagACTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga Alignment from Exonerate_protein2genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagACTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga Alignment from Exonerate_coding2genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagACTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga Alignment from GeneWise ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG ggcttgggttctaaaggggcctggatgcccccttgccatccctacttcagACTGATGCAGAGAAAGTTCTCTGAGCCCAACACATACATTGGCGGCCTGCCCAGTCGGGATTGCCAGGACGATCTGTTTGATGATGTGGAGGTATCAGAGCTAATAGCGGTGgtaaagacttggactggggatgggattggatatgatggactatgaacaga #### Afap1l2_ID12256_7 --> 2 - 0 Original Alignment agGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagagGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga Alignment from CESAR agGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagagGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga Alignment from Spaln_aa2Genome AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagAGGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga Alignment from Spaln_nt2Genome AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagAGGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga Alignment from Pairagon AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagAGGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga Alignment from Exonerate_protein2genome AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagAGGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga Alignment from Exonerate_coding2genome AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagAGGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga Alignment from GeneWise AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG gcttatgcgcaggtgctcatgccccacttaccaagtttctttcttgtcagAGGATGGAGAGGTTGTGAGCTGCTCCTATGAGTCCTATGATGAGGATGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCACCCGAGGCCAGTATTGAGCTGATGCGTGATGCCCGGATCTGTGCCTTTCTGTGGCGCAAGAAGTGGTTGGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGATACCAGGCTTTTGgtaagcccttatattctctatgggtgtattgggcaaggggttgtcagaga #### Afap1l2_ID12273_2 --> 2 - 1 Original Alignment caCAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTt ctggccatcctcagctgcagggtattgttctcttccctctcatcctgcagcaCAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTtgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg Alignment from CESAR caCAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTt ctggccatcctcagctgcagggtattgttctcttccctctcatcctgcagcaCAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTtgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg Alignment from Spaln_aa2Genome CACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT ctggccatcctcagctgcagggtattgttctcttccctctcatcctgcagCACAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg Alignment from Spaln_nt2Genome CACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT ctggccatcctcagctgcagggtattgttctcttccctctcatcctgcagCACAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg Alignment from Pairagon CACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT ctggccatcctcagctgcagggtattgttctcttccctctcatcctgcagCACAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg Alignment from Exonerate_protein2genome GCACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT ctggccatcctcagctgcagggtattgttctcttccctctcatcctgcaGCACAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg Alignment from Exonerate_coding2genome GCACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT ctggccatcctcagctgcagggtattgttctcttccctctcatcctgcaGCACAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg Alignment from GeneWise GAGCGCTACAAAGCACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT ctggccatcctcagctgcagggtattgttctcttcccTCTCATCCTGCAGCACAGGGCTGTTGCTGTCTAGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTgtgagtgtgagcctgcctgtgtcctctggagcagctacctggcctctagg #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg #### Aip_ID332_3 --> 0 - 0 Original Alignment CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg Alignment from CESAR CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg Alignment from Spaln_aa2Genome CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg Alignment from Spaln_nt2Genome CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg Alignment from Pairagon CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg Alignment from Exonerate_protein2genome CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg Alignment from Exonerate_coding2genome CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg Alignment from GeneWise CACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGGACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAG atttctggccagcaaatccagacaaatttcacagcctctctctaccacagCACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATAGCTGAGGGCAAGGACCCTCTGGAGGGACAGCGGCATTCCTGTGGGATTTCTCAGATGCATGAACACAGCTCCCTGGGCCATGCGGACCTGGATGCCCTGCAGCAGAACCCACAGCCTCTCATCTTCCACATTGAGATGCTGAAGgtgagtctgcctggctcaaagaggacactagctcttttccaatctccagg #### Aip_ID333_2 --> 0 - 0 Original Alignment GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc Alignment from CESAR GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc Alignment from Spaln_aa2Genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc Alignment from Spaln_nt2Genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc Alignment from Pairagon GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc Alignment from Exonerate_protein2genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc Alignment from Exonerate_coding2genome GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc Alignment from GeneWise GCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTGCCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAG gctggggcttttgtgaggctttttaactatttgtggtttctgaatcacagGCTACATTCCACTTTCGGACGCTGCACAGTGACAATGAAGGCTCTGTTATAGATGACAGTCGAACACGGGGCAAGCCCATGGAGCTAATCGTTGGTAAGAAGTTCAAGTTGCCTGTGTGGGAGCCAATTGTGTGCACCATGCGCGAGGGGGAGCTTGCCCAGTTTCTCTGTGACATCGAGgtaccagttcccggacatgtgctgtgtgtcctgtcttcaaggctcctgcc #### Aldh18a1_ID7971_12 --> 0 - 0 Original Alignment GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt Alignment from CESAR GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt Alignment from Spaln_aa2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt Alignment from Spaln_nt2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt Alignment from Pairagon GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt Alignment from Exonerate_protein2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt Alignment from Exonerate_coding2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt Alignment from GeneWise GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtaaagatactgcccgtttgttcaactcttctgcagGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGATTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtaagtggcctgccagtcccacccagtgttgaaatttgtatcaaatattt #### Aldh18a1_ID7980_3 --> 0 - 0 Original Alignment GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc Alignment from CESAR GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc Alignment from Spaln_aa2Genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc Alignment from Spaln_nt2Genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc Alignment from Pairagon GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc Alignment from Exonerate_protein2genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc Alignment from Exonerate_coding2genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc Alignment from GeneWise GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgacttgtgattcataattcatattttccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTGACCAGTGGAGCTGTTGCCTTTGGTAAACAGCGCCTACGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGACAGAACCATCTGAAGGAGATGgtaagtgctgcttctttggttctgttgtggggttctcaggtattccttcc #### Aldh1a1_ID4788_2 --> 0 - 0 Original Alignment ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta Alignment from CESAR ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta Alignment from Spaln_aa2Genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta Alignment from Spaln_nt2Genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta Alignment from Pairagon ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta Alignment from Exonerate_protein2genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta Alignment from Exonerate_coding2genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta Alignment from GeneWise ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG aacctgtggcatatttaagtgcatatccctcctgctctgatgggtcacagATCTTCATAAACAATGAATGGCACAATTCAGTGAGTGGAAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTTATCTGCCATGTGGAAGAAGGGGACAAGgtaaaggtaaaatttccaacacacacaggagtgtttgtttgttatcatta #### Aldh1a1_ID4793_6 --> 0 - 0 Original Alignment TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc Alignment from CESAR TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc Alignment from Spaln_aa2Genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc Alignment from Spaln_nt2Genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc Alignment from Pairagon TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc Alignment from Exonerate_protein2genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc Alignment from Exonerate_coding2genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc Alignment from GeneWise TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgatttgaaacaatgtacaggatctggtctcactgtgttaacctgcagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTTTAATAAAAGAGgtgaggttcatgaatttaaacgtgcatgcaaattctgagtccctgctttc #### Aldh1a1_ID4795_8 --> 0 - 1 Original Alignment GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACt aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACtgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta Alignment from CESAR GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACt aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACtgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta Alignment from Spaln_aa2Genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACTgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta Alignment from Spaln_nt2Genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACTgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta Alignment from Pairagon GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACTgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta Alignment from Exonerate_protein2genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACTgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta Alignment from Exonerate_coding2genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACTgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta Alignment from GeneWise GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT aaccacctgaaaacatactgagccttcttgaagcaaactcacccacacagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGCAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGAAAGAGCCCTTGTATCGTGTTTGCAGATGCTGACTgtaagtacaggtcccttgttagaatctgatagtctacctcctggtgccta #### Aldh1a1_ID4799_12 --> 1 - 2 Original Alignment gGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAAct aagatataaataaagtattatttaaaaactaattccagtcttgactccaggGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGctgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca Alignment from CESAR gGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAAct aagatataaataaagtattatttaaaaactaattccagtcttgactccaggGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGctgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca Alignment from Spaln_aa2Genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT aagatataaataaagtattatttaaaaactaattccagtcttgactccagGGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGCTgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca Alignment from Spaln_nt2Genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT aagatataaataaagtattatttaaaaactaattccagtcttgactccagGGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGCTgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca Alignment from Pairagon GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT aagatataaataaagtattatttaaaaactaattccagtcttgactccagGGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGCTgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca Alignment from Exonerate_protein2genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT aagatataaataaagtattatttaaaaactaattccagtcttgactccagGGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGCTgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca Alignment from Exonerate_coding2genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT aagatataaataaagtattatttaaaaactaattccagtcttgactccagGGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGCTgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca Alignment from GeneWise GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT aagatataaataaagtattatttaaaaactaattccagtcttgactccagGGTTAACTGCTATATGATGTTATCAGCCCAGTGCCCCTTTGGTGGATTCACGATGTCTGGAAATGGAAGAGAGCTgttagaaaagctccagattataaacattatttgataaaaaaagcttgtca #### Aldh1a7_ID4807_11 --> 0 - 2 Original Alignment ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGtg ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTAtggtggatgtgtcctttagatgtctaccatataagccaactaactctattag Alignment from CESAR ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGtg ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTAtggtggatgtgtcctttagatgtctaccatataagccaactaactctattag Alignment from Spaln_aa2Genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGTG ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTATGgtggatgtgtcctttagatgtctaccatataagccaactaactctattag Alignment from Spaln_nt2Genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGTG ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTATGgtggatgtgtcctttagatgtctaccatataagccaactaactctattag Alignment from Pairagon ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGTG ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTATGgtggatgtgtcctttagatgtctaccatataagccaactaactctattag Alignment from Exonerate_protein2genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGTG ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTATGgtggatgtgtcctttagatgtctaccatataagccaactaactctattag Alignment from Exonerate_coding2genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGTG ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTATGgtggatgtgtcctttagatgtctaccatataagccaactaactctattag Alignment from GeneWise ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGAGCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGATGGTGTG ttagggcctatagagtttctatactgttccttcactcaaattccttacagATATTTGGACCAGTGCAACAAATCATGAGGTTTAAATTGATGGATGATGTGATCAAGAGGGCAAACAACACCACCTATGGCTTAGCTGCAGGAGTTTTCACTAAAGACCTAGATAAGGCTATCACTGTGTCATCTGCTCTGCAAGCTGGGATGGTATGgtggatgtgtcctttagatgtctaccatataagccaactaactctattag #### Aldh1a7_ID4809_9 --> 2 - 0 Original Alignment tgGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagtgGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt Alignment from CESAR tgGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagtgGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt Alignment from Spaln_aa2Genome TGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagTGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt Alignment from Spaln_nt2Genome TGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagTGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt Alignment from Pairagon TGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagTGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt Alignment from Exonerate_protein2genome TGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagTGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt Alignment from Exonerate_coding2genome TGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagTGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt Alignment from GeneWise TGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTGTTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGCTAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAG attttctcaaagacatttcttctctcccactgttggattttcttcacaagTGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATCTGTGTTGCAGCTTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAATTTGTGAAGAGGAGTGTGGAGCGTGCTAAGAAATATATTCTAGGCAATCCTCTAAACTCCGGAATAAATCAAGGTCCTCAGgtaagaaacactggaaagataatagcacttcagaagggaaaaccagtctt #### Aldh1a7_ID4811_7 --> 0 - 0 Original Alignment GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc Alignment from CESAR GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc Alignment from Spaln_aa2Genome GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc Alignment from Spaln_nt2Genome GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc Alignment from Pairagon GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc Alignment from Exonerate_protein2genome GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc Alignment from Exonerate_coding2genome GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc Alignment from GeneWise GCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCTCCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAG ttttgtgaactgagttcatgattatcaaccaagccctgcttaccccacagGCAGGGTTTCCTCCTGGAGTGGTGAACATTGTCCCCAGTTATGGGCCAACGGCAGGAGGAGCCATCTCATCTCACATGGATATTGACAAAGTGTCTTTCACAGGATCAACTGAGgtatgcccatttaatggaagatctcgtgtctaacatacagctaaattctc #### Aldh1a7_ID4812_6 --> 0 - 0 Original Alignment TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc Alignment from CESAR TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc Alignment from Spaln_aa2Genome TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc Alignment from Spaln_nt2Genome TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc Alignment from Pairagon TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc Alignment from Exonerate_protein2genome TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc Alignment from Exonerate_coding2genome TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc Alignment from GeneWise TGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGGGAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAAGAG tcaagattttgagagatgccaagactctttccttattgtttttcttcaagTGGAATGGTCCATTGATTATTTTCACTTGGAAATTAGGCCCTGCCCTTAGTTGTGGGAACACAGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTCCACATGGCATCTTTAATAAAAGAGgtcaggtttccaaatctaaacatgcagtcaatttttggtcccaatttccc #### Aldh1a7_ID4813_5 --> 2 - 0 Original Alignment atGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagatGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca Alignment from CESAR atGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagatGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca Alignment from Spaln_aa2Genome ATGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagATGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca Alignment from Spaln_nt2Genome ATGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagATGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca Alignment from Pairagon ATGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagATGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca Alignment from Exonerate_protein2genome ATGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagATGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca Alignment from Exonerate_coding2genome ATGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagATGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca Alignment from GeneWise ATGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCT acttcctttttccctttaatcaatttatccagtgttggcttttctttcagATGGAAACATATTCACTTATACAAGACGTGAACCTATTGGGGTGTGTGGCCAAATCATCCCCgtaatccttctttcatgataatcaaaaaaaaagcctaattgcaactgaca #### Aldh1a7_ID4814_4 --> 0 - 1 Original Alignment ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTg taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTggtggggccatttgggattagttatggcatgattggacagggaattacttt Alignment from CESAR ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTg taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTggtggggccatttgggattagttatggcatgattggacagggaattacttt Alignment from Spaln_aa2Genome ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTG taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTGgtggggccatttgggattagttatggcatgattggacagggaattacttt Alignment from Spaln_nt2Genome ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTG taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTGgtggggccatttgggattagttatggcatgattggacagggaattacttt Alignment from Pairagon ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTG taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTGgtggggccatttgggattagttatggcatgattggacagggaattacttt Alignment from Exonerate_protein2genome ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTG taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTGgtggggccatttgggattagttatggcatgattggacagggaattacttt Alignment from Exonerate_coding2genome ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTG taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTGgtggggccatttgggattagttatggcatgattggacagggaattacttt Alignment from GeneWise ACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCATGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATCCATGGCCAAACAATACCCAGTG taggttttttgtttttctttttttttttgttgactagaggcacattacagACAATGGAATCAATGAACGCTGGGAAAGTCTTTGCTCATGCATACCTTTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTTGCAGGCTGGGCTGACAAGATTCATGGCCAAACAATACCTAGTGgtggggccatttgggattagttatggcatgattggacagggaattacttt #### Aldh3b1_ID200_7 --> 2 - 0 Original Alignment ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagccCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca Alignment from CESAR ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagccCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca Alignment from Spaln_aa2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagCCCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca Alignment from Spaln_nt2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagCCCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca Alignment from Pairagon CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagCCCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca Alignment from Exonerate_protein2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagCCCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca Alignment from Exonerate_coding2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagCCCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca Alignment from GeneWise CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG cagacatgatcctacctagggtttagacagtgccttctccgcacccacagCCCCTACAGTGTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATTCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGAGTTCATGAACCGGCGGGAGAAGCCACTGGCACTGTATGCCTTCTCCAAGCGGAGCCAGgtgagttatgtacctgaggtaagggcggatgtaggaggggtgtgttaaca #### Aldh3b1_ID203_4 --> 2 - 0 Original Alignment ggAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagggAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat Alignment from CESAR ggAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagggAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat Alignment from Spaln_aa2Genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagGGAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat Alignment from Spaln_nt2Genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagGGAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat Alignment from Pairagon GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagGGAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat Alignment from Exonerate_protein2genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagGGAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat Alignment from Exonerate_coding2genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagGGAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat Alignment from GeneWise GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG ctgccaccatgcatgattgccttctcctcatctcttgtcttcaataacagGGAATTGTGTCGTGCTTAAGCCGTCAGAGATTAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtaagtagaaatagtcaagtgctatacttggaaagtggggtctcctgcat #### Aldh3b1_ID205_2 --> 0 - 0 Original Alignment TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact Alignment from CESAR TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact Alignment from Spaln_aa2Genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact Alignment from Spaln_nt2Genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact Alignment from Pairagon TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact Alignment from Exonerate_protein2genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact Alignment from Exonerate_coding2genome TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact Alignment from GeneWise TCAGCCTTCGAGGCCGAGGTGTCTGAGATTGCCATCAGTCAGGCCGAGGTGGACCTGGCCCTCAGGAACCTGCGGTCTTGGATGAAGGATGAGAAAGTGTCCAAGAATCTG ccagcccaataccaacccaattcagcctttctttacctcctacattttagTCAGCCTTCGAGGCTGAGGTGTCTGAGATTGCTATCAGTCAGGCTGAGGTGGACCTGGCCCTTAGGAACCTGCGGTCTTGGATCAAGGATAAAAAGGTGTCTAAAAATCTGgtattggggatgagggggtgtggcggggtagtaggtggacttttggaact #### Aldh3b2_ID236_2 --> 1 - 0 Original Alignment gGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctaggGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt Alignment from CESAR gGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctaggGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt Alignment from Spaln_aa2Genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctagGGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt Alignment from Spaln_nt2Genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctagGGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt Alignment from Pairagon GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctagGGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt Alignment from Exonerate_protein2genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctagGGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt Alignment from Exonerate_coding2genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctagGGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt Alignment from GeneWise GCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG caaggttgacaaaagcacaaactaacaattaaccctctttgtcaacctaggGCAGGCCCCTCTGAGGCCACACTACACAGCCTGCAGGAGGCCCTCAATGCAGGACGGACTCGGCCTACTGAATTTCGGACTGCACAGCTGCGAAGCCTGGGTCGCTTCTTACAGGAAAATAAAGAGCTACTGCAAGATGCACTAACTAAGGATGTGGGCAAGgtgagttatgtgggatcagtggggcatctagattggatagcaatgccctt #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcaggaAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcaggaAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG gtatgcaagcaccaacctcccctcactatatggacattatttccttgcagGAAACTGTGTGGTATTGAAGCCATCTGAAATTAGTAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtaatgatggcttttcttgttcagcagttgatacacccacacctgtgtgc #### Ankrd13d_ID467_6 --> 2 - 2 Original Alignment agGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGag tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagagGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGCAG---AGG---GAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGaggtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga Alignment from CESAR agGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGag tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagagGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGCAG------AGGGAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGaggtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga Alignment from Spaln_aa2Genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagAGGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGCAG------AGGGAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGAGgtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga Alignment from Spaln_nt2Genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagAGGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGC-----AGAG-GGAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGAGgtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga Alignment from Pairagon AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagAGGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGCAG------AGGGAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGAGgtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga Alignment from Exonerate_protein2genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagAGGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGCAG------AGGGAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGAGgtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga Alignment from Exonerate_coding2genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagAGGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGCAG------AGGGAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGAGgtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga Alignment from GeneWise AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG tgtcactaatgcggcctccacctgcaactactcttgttttctttgaaaagAGGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGGAAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGGATGAACCCGAAGCACTACTGGCTGCCATGCAG------AGGGAGCATGTGGCCAGTCGGCTCACGTCTCCTATTGTATCTACCCACTTGGACACTCGCAATGTAGCCTTTGAGAGgtagggtgtaggttgccactatgggtgggaaagcgggagatacaagcaga #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTggtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTggtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from Exonerate_coding2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gctttggtcctcttttcccatgtattaagctctctgcttcctcctgcaagCATGACATTGAGCAGGAGGACCCCCAAGGGCGGACCCCCCTGGAGCTTGCTGTGACTTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCAACATAATGCCAATGTGGGCAAAGAAAGCCACCAAGGCTGGGCTGgtgagttactgggcagtgggtttccctttgagtttatcttccatgttggt #### Ankrd1_ID7095_8 --> 0 - 0 Original Alignment GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATT---CTCTTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca Alignment from CESAR GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATT---CTCTTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca Alignment from Spaln_aa2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATTCTC---TTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca Alignment from Spaln_nt2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATT---CTCTTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca Alignment from Pairagon GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATT---CTCTTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca Alignment from Exonerate_protein2genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATT---CTCTTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca Alignment from Exonerate_coding2genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATT---CTCTTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca Alignment from GeneWise GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT cttccttgcttcccagattgctacaaacaattcttgaattctggttttagGAAGGAGACACCCCATTGCATGATGCAGTGAGACTAAACCGTTACAAGATGATT---CTCTTGATGACTTTCGGTGCAGACCTGAAGGTGAAGAACTGTgtgagtagtcaaatcaacaagggcacaactattctgcttttgagttccca #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcggatgatggttattctccctcctttttttgttcttgtcttcccgcagCTCCTCAGCACAGCATTGCATGTGGCAGTGAGGACTGGCCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCCGATCTCAATGCCAGGGACAGAgtaactatttgacagctctgtgccagtgtcaccttctttgaagccaccca #### Ankrd1_ID7097_6 --> 0 - 0 Original Alignment CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg Alignment from CESAR CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg Alignment from Spaln_aa2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg Alignment from Spaln_nt2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg Alignment from Pairagon CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg Alignment from Exonerate_protein2genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg Alignment from Exonerate_coding2genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg Alignment from GeneWise CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG caaaattctccagcacactgccttccctacaatattttttttccaaatagCTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTGCTGCTGAACAAAGGAGCCAAAATTAGTGCCAGAGACAAGgtaaagcttggtccttccataggcttctacttccttgagagtcctatttg #### Ankrd1_ID7102_3 --> 0 - 0 Original Alignment CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc Alignment from CESAR CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc Alignment from Spaln_aa2Genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc Alignment from Spaln_nt2Genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc Alignment from Pairagon CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc Alignment from Exonerate_protein2genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc Alignment from Exonerate_coding2genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc Alignment from GeneWise CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG agaactcactcaatatttcacaactccttttgttgttgttgtttttacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAAAGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtgagtattatttaattattgcacattctcataagttgcagagatgagtc #### Ankrd2_ID8368_2 --> 0 - 0 Original Alignment AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACTAGAG------AAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga Alignment from CESAR AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACTA------GAGAAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga Alignment from Spaln_aa2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACTAGAG------AAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga Alignment from Spaln_nt2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACTAGAG------AAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga Alignment from Pairagon AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACT------AGAGAAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga Alignment from Exonerate_protein2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACTA------GAGAAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga Alignment from Exonerate_coding2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACTA------GAGAAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga Alignment from GeneWise AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatacttcttgtactctctcggtcagAAGCTTCGAAGATCTGCTCCTGGGAAGTTGTCCATGGACATGCTAGTACTAGAG------AAGCGCCTTGGGGTTCAGAGGCCTGCTTTACAAGAGTTCAAGgtaagcgtggacgaaggaagagtgtgtgcttaggcaacaggtctgttaga #### Anxa1_ID4761_9 --> 2 - 1 Original Alignment tgTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCg catgtgagtcagttactttgattacattattcacactcatctccccacagtgTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTggtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt Alignment from CESAR tgTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCg catgtgagtcagttactttgattacattattcacactcatctccccacagtgTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTggtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt Alignment from Spaln_aa2Genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttactttgattacattattcacactcatctccccacagTGTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTGgtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt Alignment from Spaln_nt2Genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttactttgattacattattcacactcatctccccacagTGTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTGgtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt Alignment from Pairagon TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttactttgattacattattcacactcatctccccacagTGTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTGgtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt Alignment from Exonerate_protein2genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttactttgattacattattcacactcatctccccacagTGTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTGgtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt Alignment from Exonerate_coding2genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttactttgattacattattcacactcatctccccacagTGTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTGgtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt Alignment from GeneWise TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttactttgattacattattcacactcatctccccacagTGTTTCAAAATTATGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAGCTGAAGGGTGATATTGAGAAGTGCCTGACAGCTGTTGgtaagcagtaatgcaggattgatgataaataatagaaatcaaatgctttt #### Anxa1_ID4764_6 --> 2 - 0 Original Alignment agCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagagCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc Alignment from CESAR agCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagagCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc Alignment from Spaln_aa2Genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc Alignment from Spaln_nt2Genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc Alignment from Pairagon AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc Alignment from Exonerate_protein2genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc Alignment from Exonerate_coding2genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc Alignment from GeneWise AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG ctatcttttcagaataatttgctactaacagtgtctctctcttcctccagAGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGACACATCTGGAGACTTTCGGAAAGCTTTGCTTGCTCTTGCCAAGgtaagtcatgaatgctctggtagtgcatttgctatgagtcgaataaaagc #### Anxa1_ID4768_2 --> 0 - 1 Original Alignment CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAg aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGggtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt Alignment from CESAR CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAg aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGggtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt Alignment from Spaln_aa2Genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGGgtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt Alignment from Spaln_nt2Genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGGgtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt Alignment from Pairagon CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGGgtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt Alignment from Exonerate_protein2genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGGgtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt Alignment from Exonerate_coding2genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGGgtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt Alignment from GeneWise CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG aataaataaatggatgaccaaatactaaccgtccttctgcttggtctcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAGGgtaagtgtgttttcattaatagacctccaaacattttacagcaatttctt #### Apba1_ID5230_3 --> 0 - 1 Original Alignment TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg tttagttgagctcttcccactttgaaataacttttttctgatatccgtagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga Alignment from CESAR TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg tttagttgagctcttcccactttgaaataacttttttctgatatccgtagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga Alignment from Spaln_aa2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgagctcttcccactttgaaataacttttttctgatatccgtagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga Alignment from Spaln_nt2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgagctcttcccactttgaaataacttttttctgatatccgtagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga Alignment from Pairagon TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgagctcttcccactttgaaataacttttttctgatatccgtagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga Alignment from Exonerate_protein2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgagctcttcccactttgaaataacttttttctgatatccgtagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga Alignment from Exonerate_coding2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG tttagttgagctcttcccactttgaaataacttttttctgatatccgtagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga Alignment from GeneWise tttagttgagctcttcccactttgaaataacttttttctgatatccgtagtcaagaaaaagcttggcttcattcccaacctatgttgaaggcaagccctgaagagacaaacaaaggggcgccatttatagatacctgtga #### Apba1_ID5236_6 --> 0 - 0 Original Alignment GCTCCTGAAGGCGAATCTCAGCCAATG---ACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata Alignment from CESAR GCTCCTGAAGGCGAATCTCAGCCAATG---ACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata Alignment from Spaln_aa2Genome GCTCCTGAAGGCGAATCTCAGCCA---ATGACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata Alignment from Spaln_nt2Genome GCTCCTGAAGGCGAATCTCAGCCA---ATGACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata Alignment from Pairagon GCTCCTGAAGGCGAATCTCAGCCA---ATGACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata Alignment from Exonerate_protein2genome GCTCCTGAAGGCGAATCTCAGCCA---ATGACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata Alignment from Exonerate_coding2genome GCTCCTGAAGGCGAATCTCAGCCA---ATGACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata Alignment from GeneWise GCTCCTGAAGGCGAATCTCAGCCAATG---ACTGAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTACTGAATGCGGATACACAG tagttctgttgattctgtcttagtaacatgtaagccttgtattcctttagGCTCCTGAAGGCGAGTCTCAGCCAATGATGACTCAGGTGGACCTGTTCATCTCTACCCAGAGGATCAAAGTGCTCAATGCAGATACACAGgtacgtgctaactcccactttagggatgaaactacaggaattctaagata #### Apba1_ID5238_8 --> 0 - 0 Original Alignment GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc Alignment from CESAR GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc Alignment from Spaln_aa2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc Alignment from Spaln_nt2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc Alignment from Pairagon GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc Alignment from Exonerate_protein2genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc Alignment from Exonerate_coding2genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc Alignment from GeneWise GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT actgcttcaagggattgtccagagtggggtctgatttattgaattctcagGCCCAGCTGATTGCACAATCTATAGGACAGGCATTCAGTGTTGCATACCAGGAATTCCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGCCAGAAGGAATCCAGTGACCTGCTTAACACCAAAGACATGTACAATGATGATTTCATCCACTCCTCCAAATCGGAAAATTGTAAAGACgtgagcactcccaggacttgttcctgaggtgtaccaggagggtggggctc #### Apba1_ID5239_9 --> 0 - 0 Original Alignment GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag Alignment from CESAR GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag Alignment from Spaln_aa2Genome GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag Alignment from Spaln_nt2Genome GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag Alignment from Pairagon GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag Alignment from Exonerate_protein2genome GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag Alignment from Exonerate_coding2genome GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag Alignment from GeneWise GTCTTCATAGAGAAGCAGAAAGGTGAGATCCTGGGAGTTGTGATTGTGGAGTCTGGCTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCACGGGGGCCCTGCAGAGAAGTCGGGGAAGCTGAATATCGGGGACCAGATCATGTCCATCAACGGCACCAGCCTGGTGGGCCTGCCTCTCTCTACCTGCCAGAGCATCATTAAG tggatcatacatggccgcttatttaagatcaagtatcctttcacttacagGTCTTCATAGAGAAGCAGAAAGGTGAGATCCTCGGAGTTGTCATCGTGGAGTCTGGGTGGGGATCCATTCTGCCAACCGTGATCATTGCCAACATGATGCATGGGGGCTCTGCAGAGAAGTCAGGGAAGCTGAATATTGGGGACCAGATCATGTCCATCAATGGCACCAGCCTGGTGGGCCTTCCTCTCTCAACTTGCCAGAGCATCATCAAGgtaagtaggcttgagaaaacctgtcagtgacaggcatgaagtggtgttag #### Apba1_ID5242_11 --> 0 - 0 Original Alignment ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag Alignment from CESAR ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag Alignment from Spaln_aa2Genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag Alignment from Spaln_nt2Genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag Alignment from Pairagon ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag Alignment from Exonerate_protein2genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag Alignment from Exonerate_coding2genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag Alignment from GeneWise ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcaaaaagcttatccatgattgcattagagattgtctctttagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAGAGAGGAGGTGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAGAGTGTTGTAGCCACACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagaaagcctggggctaaacagggtcgaagtagctgccatgtcag #### Arl2_ID1476_3 --> 1 - 0 Original Alignment aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg Alignment from CESAR aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg Alignment from Spaln_aa2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg Alignment from Spaln_nt2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg Alignment from Pairagon ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg Alignment from Exonerate_protein2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg Alignment from Exonerate_coding2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg Alignment from GeneWise ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctggggagcagacagactgcctggttttcttcttccccagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAGGACTGTCAGCAAGAGCTGCAAAGCCTACTGGTTGAGGAGgtaaggcccaggcctcgacttgtagctaggccaaaccctcaacacctgtg #### Arl3_ID9951_5 --> 0 - 0 Original Alignment GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc Alignment from CESAR GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc Alignment from Spaln_aa2Genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc Alignment from Spaln_nt2Genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc Alignment from Pairagon GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc Alignment from Exonerate_protein2genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc Alignment from Exonerate_coding2genome GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc Alignment from GeneWise GAACTAACGGAATTACTGGAGGAAGAAAAGCTGAGTTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCAGAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCGAGGGCGTCCAG atctatctctcctcctcctcccccttccaattttattttccctttcctagGAACTAACGGAACTACTGGAGGAAGAAAAGCTGAGCTGTGTGCCTGTGCTCATCTTTGCTAACAAGCAGGATCTACTCACAGCTGCCCCAGCCTCTGAGATTGCAGAAGGGCTAAACCTTCATACCATCCGGGACCGTGTCTGGCAGATCCAGTCCTGTTCAGCACTCACTGGTGAGGGTGTTCAGgtaagctggtggcaaggattgctttgcttcctgtccacatggcagctccc #### Arl3_ID9952_4 --> 0 - 0 Original Alignment ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg Alignment from CESAR ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg Alignment from Spaln_aa2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg Alignment from Spaln_nt2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg Alignment from Pairagon ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg Alignment from Exonerate_protein2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg Alignment from Exonerate_coding2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg Alignment from GeneWise ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tctctttctgcctgtgtgtgtaaaagtatgttctctcccgttgcccgcagATCTATGTAATTGACAGCGCCGACAGAAAGAGATTTGAAGAGACAGGCCAGgtaagtgaatgctttttgtattgacccttccccaaccccagcacttgtcg #### Asah2_ID6661_13 --> 0 - 2 Original Alignment CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAac tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAacgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt Alignment from CESAR CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAac tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAacgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt Alignment from Spaln_aa2Genome CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAAC tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAACgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt Alignment from Spaln_nt2Genome CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAAC tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAACgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt Alignment from Pairagon CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAAC tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAACgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt Alignment from Exonerate_protein2genome CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAAC tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAACgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt Alignment from Exonerate_coding2genome CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAAC tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAACgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt Alignment from GeneWise CTGACGATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCCCTGGGGAATTAAC tagatagggtagtttatgcacaacagtaaacatctctttcctgttcttagCTGACAATACCACATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCTTTGGCCATAGCTGCTATCCCTGGGGAATTAACgtaagtccttctgtccttctgttaaaaatcaagcctgcccacaagcactt #### Asah2_ID6663_11 --> 0 - 1 Original Alignment GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGggtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg Alignment from CESAR GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGggtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg Alignment from Spaln_aa2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg Alignment from Spaln_nt2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg Alignment from Pairagon GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg Alignment from Exonerate_protein2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg Alignment from Exonerate_coding2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg Alignment from GeneWise GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaacctgtgtccctttcttactatttaagcagcatccttgcatcttagGTGAAGACATGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGGgtgagtgaaagggttagggcatcggtatgctgatgagacttaaactgtgg #### Asah2_ID6672_2 --> 2 - 0 Original Alignment atTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagatTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt Alignment from CESAR atTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagatTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt Alignment from Spaln_aa2Genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagATTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt Alignment from Spaln_nt2Genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagATTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt Alignment from Pairagon ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagATTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt Alignment from Exonerate_protein2genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagATTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt Alignment from Exonerate_coding2genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagATTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt Alignment from GeneWise ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtaaagtgggataaagtgttgcgtttcacctcagtgcttccccccacagATTCAGGGAATCACTGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCTATTCCACAGACTCCAAACTTCCCTTCATTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATTAACTTGgtgagtacaccacttgggtccataaagatggcatgcaacaagtaattctt #### Asrgl1_ID2594_6 --> 2 - 1 Original Alignment gaGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAg tgtttcactccttgactgtggctgttcacacttgcagggtgtccccataggaGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAggtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat Alignment from CESAR gaGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAg tgtttcactccttgactgtggctgttcacacttgcagggtgtccccataggaGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAggtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat Alignment from Spaln_aa2Genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcactccttgactgtggctgttcacacttgcagggtgtccccatagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAGgtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat Alignment from Spaln_nt2Genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcactccttgactgtggctgttcacacttgcagggtgtccccatagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAGgtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat Alignment from Pairagon GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcactccttgactgtggctgttcacacttgcagggtgtccccatagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAGgtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat Alignment from Exonerate_protein2genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcactccttgactgtggctgttcacacttgcagggtgtccccatagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAGgtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat Alignment from Exonerate_coding2genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcactccttgactgtggctgttcacacttgcagggtgtccccatagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAGgtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat Alignment from GeneWise GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG tgtttcactccttgactgtggctgttcacacttgcagggtgtccccatagGAGCTGGAGGTTATGCAGGTAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTAAAGGTGAATCTGGCCAGACTTGCCCTGTTCCATGTCGATCAAGgtaagcaggcaatgaaacaggtgtatagctagtacgacaggtaaatagat #### Asrgl1_ID2598_2 --> 2 - 1 Original Alignment ccTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAg ctgaatctcttagaccagttcataatgataaatattttcttttctcatagccTCCATTGATGTGAGTCTTGTGGTGGTA---GATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAggtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg Alignment from CESAR ccTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAg ctgaatctcttagaccagttcataatgataaatattttcttttctcatagccTCCATTGATGTGAGTCTTGTGGTGGTA---GATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAggtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg Alignment from Spaln_aa2Genome CCTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG ctgaatctcttagaccagttcataatgataaatattttcttttctcatagCCTCCATTGATGTGAGTCTT---GTGGTGGTAGATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAGgtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg Alignment from Spaln_nt2Genome CCTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG ctgaatctcttagaccagttcataatgataaatattttcttttctcatagCCTCCATTGATGTGAGTCTTGTGGTGGTAG---ATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAGgtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg Alignment from Pairagon CCTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG ctgaatctcttagaccagttcataatgataaatattttcttttctcatagCCTCCATTGATGTGAGTCTTGTGGTGGTAG---ATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAGgtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg Alignment from Exonerate_protein2genome GCCTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG ctgaatctcttagaccagttcataatgataaatattttcttttctcataGCCTCCATTGATGTGAGTCTT---GTGGTGGTAGATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAGgtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg Alignment from Exonerate_coding2genome GCCTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG ctgaatctcttagaccagttcataatgataaatattttcttttctcataGCCTCCATTGATGTGAGTCTT---GTGGTGGTAGATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAGgtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg Alignment from GeneWise GCCTCCATCGATGTGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG ctgaatctcttagaccagttcataatgataaatattttcttttctcataGCCTCCATTGATGTGAGTCTTGTGGTGGTA---GATGGTGGTGGAGCAACCAACATCTCAGCCAACCGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCGGCAACTGAGGGTTATAAACTCCTCAAGGCAGGAGGGAGTGCGGTAGATGCTGTGGAAGGAGCTGTGACTGTCCTGGAAAATGACCCAGAGTTCAACGCAGgtaaattatgcttgccaggtgaatgattccaggccagagcaaagttcctg #### Atrnl1_ID12447_17 --> 2 - 1 Original Alignment taAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGc aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagtaAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCAtgtagggataaataggcagacatttaaccactctagggcattacaaaatga Alignment from CESAR taAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGc aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagtaAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCAtgtagggataaataggcagacatttaaccactctagggcattacaaaatga Alignment from Spaln_aa2Genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagTAAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtagggataaataggcagacatttaaccactctagggcattacaaaatga Alignment from Spaln_nt2Genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagTAAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtagggataaataggcagacatttaaccactctagggcattacaaaatga Alignment from Pairagon TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagTAAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtagggataaataggcagacatttaaccactctagggcattacaaaatga Alignment from Exonerate_protein2genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagTAAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtagggataaataggcagacatttaaccactctagggcattacaaaatga Alignment from Exonerate_coding2genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagTAAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtagggataaataggcagacatttaaccactctagggcattacaaaatga Alignment from GeneWise TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaaccaaagtaaccccattaaatgataacatcttttttcccttcacagTAAGCCCAAATCAGAACGCAAGACCGTGCAAGAAGCCATGCTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGCAGCACGAAGCACTGTGTGGACTCCAATGCTTACATCATCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtagggataaataggcagacatttaaccactctagggcattacaaaatga #### Atrnl1_ID12449_19 --> 2 - 1 Original Alignment ctTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAg cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagctTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAggtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa Alignment from CESAR ctTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAg cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagctTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAggtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa Alignment from Spaln_aa2Genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagCTTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAGgtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa Alignment from Spaln_nt2Genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagCTTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAGgtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa Alignment from Pairagon CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagCTTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAGgtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa Alignment from Exonerate_protein2genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagCTTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAGgtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa Alignment from Exonerate_coding2genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagCTTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAGgtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa Alignment from GeneWise CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtagctgatactaatctttgtgacaaaaatatcatattttttcttagCTTGCCAGTGTAATGGACACAGCACATGTATTAACAACAATGTCTGTGAGCAGTGTAAGAACCTAACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGGCAATGCACAGgtgagtactttcaacctattcaatgtgcatgagttaatcaaatgaagaaa #### Atrnl1_ID12454_21 --> 1 - 1 Original Alignment aTGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATt ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagaTGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATtgtaagggttggatctttttatttaacataaatgatttatagtgttagctt Alignment from CESAR aTGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATt ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagaTGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATtgtaagggttggatctttttatttaacataaatgatttatagtgttagctt Alignment from Spaln_aa2Genome ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagATGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATTgtaagggttggatctttttatttaacataaatgatttatagtgttagctt Alignment from Spaln_nt2Genome ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagATGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATTgtaagggttggatctttttatttaacataaatgatttatagtgttagctt Alignment from Pairagon ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagATGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATTgtaagggttggatctttttatttaacataaatgatttatagtgttagctt Alignment from Exonerate_protein2genome ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagATGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATTgtaagggttggatctttttatttaacataaatgatttatagtgttagctt Alignment from Exonerate_coding2genome ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagATGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATTgtaagggttggatctttttatttaacataaatgatttatagtgttagctt Alignment from GeneWise ATGTGACTCTGAAAATCGCTATGTTGGTAATCCACTTAGGGGGACATGCTATT ctttaatctacaatcgaatagttaagaattgccttcttgttctccactagATGTGATTCTGAAAACCACTATGTTGGTAATCCACTTAGGGGGACGTGCTATTgtaagggttggatctttttatttaacataaatgatttatagtgttagctt #### Atrnl1_ID12461_26 --> 1 - 0 Original Alignment tTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagtTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct Alignment from CESAR tTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagtTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct Alignment from Spaln_aa2Genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagTTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct Alignment from Spaln_nt2Genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagTTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct Alignment from Pairagon TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagTTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct Alignment from Exonerate_protein2genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagTTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct Alignment from Exonerate_coding2genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagTTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct Alignment from GeneWise TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG ttatataaaattcagcattattaggcaatattgcctgtttctcctggtagTTGTTTTTTGTCTTTACTTCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCCCGTCGGAGGGAGgtaagtagtgacattaacgagtctctctatgagggtcagtagacgtggct #### BC049760_ID1439_4 --> 1 - 0 Original Alignment gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtaggCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag Alignment from CESAR gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtaggCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag Alignment from Spaln_aa2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtagGCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag Alignment from Spaln_nt2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtagGCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag Alignment from Pairagon GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtagGCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag Alignment from Exonerate_protein2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtagGCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag Alignment from Exonerate_coding2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtagGCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag Alignment from GeneWise GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG ggggattgggtctcagggggctgggctcaaaccttgcatttgttttgtagGCTTGAGGAATCACTGTACGCAAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTCGACAACTTGgtagcttcagcccaagggctgctctttgccttggctcagcccccccccag #### Bbs1_ID722_12 --> 0 - 1 Original Alignment GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAg tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAggtaagtactctgacctgagtagcacactggtactggcatgaaggagatga Alignment from CESAR GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAg tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAggtaagtactctgacctgagtagcacactggtactggcatgaaggagatga Alignment from Spaln_aa2Genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAGgtaagtactctgacctgagtagcacactggtactggcatgaaggagatga Alignment from Spaln_nt2Genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAGgtaagtactctgacctgagtagcacactggtactggcatgaaggagatga Alignment from Pairagon GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAGgtaagtactctgacctgagtagcacactggtactggcatgaaggagatga Alignment from Exonerate_protein2genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAGgtaagtactctgacctgagtagcacactggtactggcatgaaggagatga Alignment from Exonerate_coding2genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAGgtaagtactctgacctgagtagcacactggtactggcatgaaggagatga Alignment from GeneWise GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAGGTGG tgctttctctcttgaggtcttttccaacgcctcttcctactcctttccagGATGCAGTGACCAGCTTGTGCTTTGGCAGATATGGGCGGGAAGACAACACCCTTATTATGACTACTAAAGGTAAgtactctgacctgagtagcacactggtactggcatgaaggagatga #### Bbs1_ID723_11 --> 0 - 0 Original Alignment GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct Alignment from CESAR GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct Alignment from Spaln_aa2Genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct Alignment from Spaln_nt2Genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct Alignment from Pairagon GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct Alignment from Exonerate_protein2genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct Alignment from Exonerate_coding2genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct Alignment from GeneWise GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG atttccacatgatgcccaggtccctgtgagagccctacccttgtgcccagGGCAAAAAGCTGTGGACAGTGCATATACCTGCAGCCATTCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGTGAAGTCAGAATTTACCGAGACAAGGCTCTGCTCAATGTCATCCATGCTCCAgtgagcaggccgcatggcgctggtgccaccataacccctgccaccgccct #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCaggtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCaggtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCAGgtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCAGgtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct Alignment from Pairagon GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCAGgtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCAGgtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct Alignment from Exonerate_coding2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCAGgtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct Alignment from GeneWise GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG ccatggctgccagtgctcccagactcacattgcttctcactttattttagGATCAGATTGACCCCTTGACCCTGAAAGATATGCTGGAGGATATCAGgtaagtgttcacctttcctccttggtgccccttcatcccaaaactctcct #### Bbs1_ID730_4 --> 0 - 0 Original Alignment CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg Alignment from CESAR CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg Alignment from Spaln_aa2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg Alignment from Spaln_nt2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg Alignment from Pairagon CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg Alignment from Exonerate_protein2genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg Alignment from Exonerate_coding2genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg Alignment from GeneWise CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcaacagaaagggaattggactttctgtttccagCTATTAGTGGGAGACCTTGGTGCAGGTGGACAGCAGCCCCGCCTAAAGGTGCTCAAAGGACCCACAGTGCTGATGGAGAGCCCGCTGCCTGCTCTGCCAGCCTCAGCTGCTACCTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGGAACAGGATGTTTGGAATCAAGCCAAAGAGgtgagtaacatagcaaacaagaactcagagagagcatcccccaaatgagg #### Best1_ID2632_7 --> 0 - 0 Original Alignment GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg Alignment from CESAR GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg Alignment from Spaln_aa2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg Alignment from Spaln_nt2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg Alignment from Pairagon GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg Alignment from Exonerate_protein2genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg Alignment from Exonerate_coding2genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg Alignment from GeneWise GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggggcagagtaacagagtctcagagcgcttaatacctctcttctcacagGTGGCAGAACAGCTCATCAACCCCTTTGGGGAAGACGATGATGACTTTGAAACAAACTGGATCATTGACAGAAACCTGCAGgtgagtggggtctgcagagactctgtcttatacacttctcaagagagggg #### Best1_ID2634_5 --> 0 - 0 Original Alignment GAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGAG---TGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc Alignment from CESAR GAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGAG---TGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc Alignment from Spaln_aa2Genome GAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGAG---TGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc Alignment from Spaln_nt2Genome GTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGAGTGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc Alignment from Pairagon GAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGA---GTGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc Alignment from Exonerate_protein2genome GAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGAG---TGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc Alignment from Exonerate_coding2genome GAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGAG---TGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc Alignment from GeneWise GAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCATTGGTGTACACACAG gagtgggagggtactgcagtggcaactctttttcctgtgtgttgtgacagGAG---TGTACTTTGCGTGCTCAGTGTGGACAGCTGTATGCCTATGACTGGATAAGTATCCCATTGGTGTATATGCAGgtaaagactgtgggaaactgcatctttactagagactgaatacaatctcc #### Best1_ID2636_3 --> 2 - 1 Original Alignment gtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAg gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcaggtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAggtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga Alignment from CESAR gtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAg gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcaggtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAggtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga Alignment from Spaln_aa2Genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga Alignment from Spaln_nt2Genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga Alignment from Pairagon GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga Alignment from Exonerate_protein2genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga Alignment from Exonerate_coding2genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga Alignment from GeneWise GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacagcttgttcccaccccacttgtatcacatgaagttcttgttgcagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTGATGATACAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTATGCCATCCTGGGCCAAGTGCTTATCCTGCGCAGCATCAGCACCTCGGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatccagtgtctggagtgggctgggcctgcagagccaggcctaactgga #### Blnk_ID8055_16 --> 0 - 0 Original Alignment GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt Alignment from CESAR GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt Alignment from Spaln_aa2Genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt Alignment from Spaln_nt2Genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt Alignment from Pairagon GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt Alignment from Exonerate_protein2genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt Alignment from Exonerate_coding2genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt Alignment from GeneWise GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG tgaatatggcctaaggagctattactaatctgtacttgtctgtccctcagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGATTCTAAGCAGCCATACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCTGTACGATTTATTGAAGCGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgtaagaaacttttacttctctgtttctttatttccttaatcttgagagtt #### Blnk_ID8057_14 --> 2 - 0 Original Alignment ggTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagattcattatatgtgcctttaatttttagggTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga Alignment from CESAR ggTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagattcattatatgtgcctttaatttttagggTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga Alignment from Spaln_aa2Genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagattcattatatgtgcctttaatttttagGGTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga Alignment from Spaln_nt2Genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagattcattatatgtgcctttaatttttagGGTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga Alignment from Pairagon GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagattcattatatgtgcctttaatttttagGGTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga Alignment from Exonerate_protein2genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagattcattatatgtgcctttaatttttagGGTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga Alignment from Exonerate_coding2genome GTCCATCAAAAGCCTGTACCCTTGCCAAGGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagATTCATTATATGTGCCTTTAATTTTTAGGGTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga Alignment from GeneWise GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG acctgcacagaagtgactaaagattcattatatgtgcctttaatttttagGGTTCCCAGAAGCAGGGAGCCCTGCTGCAGCTGGACCATTCCACAGCTTCCCATTTAATTCAACATTTGCAGACCAGgtacattataagcttgacttcagtgaattatttccagtgaatttctggga #### Blnk_ID8068_3 --> 1 - 1 Original Alignment gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcaggCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAggtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat Alignment from CESAR gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcaggCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAggtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat Alignment from Spaln_aa2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcagGCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAGgtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat Alignment from Spaln_nt2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcagGCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAGgtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat Alignment from Pairagon GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcagGCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAGgtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat Alignment from Exonerate_protein2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcagGCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAGgtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat Alignment from Exonerate_coding2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcagGCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAGgtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat Alignment from GeneWise GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG cctgtttactggtaacccttgcatgtgtgttctttctcttttgcttgcagGCTAAAAGTCAAAGGCCCTCCAAGTGTCCCTCGAAGTGACTACGCATTAGgtaagtatctttccaaaatatattaactggctcttgtctgggggtgacat #### Blnk_ID8069_2 --> 1 - 2 Original Alignment aCAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAaa aggaataaaccttgatcttaatattatgctggtttgcactcatgccacagaCAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAatgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt Alignment from CESAR aCAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAaa aggaataaaccttgatcttaatattatgctggtttgcactcatgccacagaCAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAatgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt Alignment from Spaln_aa2Genome ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA aggaataaaccttgatcttaatattatgctggtttgcactcatgccacagACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAATgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt Alignment from Spaln_nt2Genome ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA aggaataaaccttgatcttaatattatgctggtttgcactcatgccacagACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAATgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt Alignment from Pairagon ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA aggaataaaccttgatcttaatattatgctggtttgcactcatgccacagACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAATgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt Alignment from Exonerate_protein2genome ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA aggaataaaccttgatcttaatattatgctggtttgcactcatgccacagACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAATgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt Alignment from Exonerate_coding2genome ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA aggaataaaccttgatcttaatattatgctggtttgcactcatgccacagACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAATgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt Alignment from GeneWise AGACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA aggaataaaccttgatcttaatattatgctggtttgcactcatgccacAGACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATTATGGACAAGATAAAAATgtaagttagtcagtatgatgtatatgcactgagtcattgagtactgtatt #### Bloc1s2_ID8947_4 --> 2 - 1 Original Alignment atGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGg ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagatGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGggtgagtactttgatctctgttccaatcatttatgctttgttttataaaaa Alignment from CESAR atGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGg ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagatGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGggtgagtactttgatctctgttccaatcatttatgctttgttttataaaaa Alignment from Spaln_aa2Genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagATGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGGgtgagtactttgatctctgttccaatcatttatgctttgttttataaaaa Alignment from Spaln_nt2Genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagATGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGGgtgagtactttgatctctgttccaatcatttatgctttgttttataaaaa Alignment from Pairagon ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagATGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGGgtgagtactttgatctctgttccaatcatttatgctttgttttataaaaa Alignment from Exonerate_protein2genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagATGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGGgtgagtactttgatctctgttccaatcatttatgctttgttttataaaaa Alignment from Exonerate_coding2genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTG ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagATGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGggtgagtactttgatctctgttccaatcatttatgctttgttttataaaaa Alignment from GeneWise ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGGAAGCCAAGTACAAGAAGTTGGAGAAGCGA ttttcaccatactagctgactatatctgtctgtgtactttcttcctctagATGCTGAACTACAGCCATATCTAGACCAGATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAGCTTGATGCTTATTCCAAAAAACTGGGTGAGTACTTTGATCTCTGTTCCAATCATttatgctttgttttataaaaa #### Bloc1s2_ID8949_2 --> 2 - 1 Original Alignment atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg ggcataggggtaggagatttactcctcacattcccactttcctgcaacagacGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAggtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact Alignment from CESAR atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg ggcataggggtaggagatttactcctcacattcccactttcctgcaacagacGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAggtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact Alignment from Spaln_aa2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG ggcataggggtaggagatttactcctcacattcccactttcctgcaacagACGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAGgtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact Alignment from Spaln_nt2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG ggcataggggtaggagatttactcctcacattcccactttcctgcaacagACGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAGgtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact Alignment from Pairagon ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG ggcataggggtaggagatttactcctcacattcccactttcctgcaacagACGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAGgtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact Alignment from Exonerate_protein2genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG ggcataggggtaggagatttactcctcacattcccactttcctgcaacagACGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAGgtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact Alignment from Exonerate_coding2genome CCACCTCGAGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG ggcataggggtaggagatttactcctcacattcccactttCCTGCAACAGACGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAGgtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact Alignment from GeneWise ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG ggcataggggtaggagatttactcctcacattcccactttcctgcaacagACGATGCTGCAGTGGAGACAGCCGAGGAAGCAAAAGAGCCCGCCGAAGCTGACATCAATGAGCTCTGCCAGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTAACAGgtgatgtgtaataccttcttgctgactcagctgtgtatctgtatttgact #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG gcaagcataggaaaatggcagcacctgtctcccctttggctcttctccagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGCTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTGAACAAAAGCAGCTCCTGGAAGGCATGAGGCCGCCCCTAGAAATCTATACTGACTATAGGGAGAATTCAgtatccggctgacagagttgggaaacaactcttcaatgagccgtaattgt #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagagGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATggtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagagGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATggtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcacctgaatggtaacctatccccagAGGGCCAACTGTCAGAAGAAGAGAAACCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCCAGTGATGgtggaggcaccatgtgatgggcaggggcactgtgtggtggggaggtcact #### Btaf1_ID7217_2 --> 1 - 0 Original Alignment gCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG gctcaaaaggcgacacattcagattaactttgctgatgttggctttacaggATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg Alignment from CESAR gCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG gctcaaaaggcgacacattcagattaactttgctgatgttggctttacaggATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg Alignment from Spaln_aa2Genome GCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG gctcaaaaggcgacacattcagattaactttgctgatgttggctttacagGATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg Alignment from Spaln_nt2Genome GCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG gctcaaaaggcgacacattcagattaactttgctgatgttggctttacagGATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg Alignment from Pairagon GCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG gctcaaaaggcgacacattcagattaactttgctgatgttggctttacagGATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg Alignment from Exonerate_protein2genome AGGCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG gctcaaaaggcgacacattcagattaactttgctgatgttggctttacAGGATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg Alignment from Exonerate_coding2genome AGGCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG gctcaaaaggcgacacattcagattaactttgctgatgttggctttacAGGATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg Alignment from GeneWise GCGGTCTCCAGGCTTGATCGTCTTTTTATCTTACTGGATACTGGTACTACTCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTTCATCCTCATGAATTAAATAATTTGTTATCTAAG caaaaggcgacacattcagattaactttgctgatgttgg---CTTTACAGGATTGATCGTCTATTTATCTTACTTGATACTGGTACTACCCCAGTTACAAGAAAGGCTGCTGCACAGCAACTTGGAGAAGTGGTGAAGCTACATCCTCATGAATTGAATAATTTGTTATCCAAGgtctgaactcagggtccttaatacaagtgtaagaacttgtctgtggttgg #### Btaf1_ID7224_7 --> 1 - 0 Original Alignment cAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagcAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt Alignment from CESAR cAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagcAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt Alignment from Spaln_aa2Genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagCAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt Alignment from Spaln_nt2Genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagCAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt Alignment from Pairagon CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagCAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt Alignment from Exonerate_protein2genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagCAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt Alignment from Exonerate_coding2genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagCAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt Alignment from GeneWise CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG agagcatttggactattcatatacttgggctctccccgactcacccctagCAATGACAGCACTGATGGAGAGCCAGAAGAGAAGAGACAGAAAGTAGCGAATGTTGTTATTAATCAGACTGCAAGTGACTCCCAAGTCTTGATAGACAATGTTGCAGAGAGTTCTTCCTTAATTAAAGAGgtgcgctgaaattgtttacaattttattattttcaatttttagccttatt #### Btaf1_ID7229_12 --> 0 - 0 Original Alignment GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt Alignment from CESAR GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt Alignment from Spaln_aa2Genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt Alignment from Spaln_nt2Genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt Alignment from Pairagon GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt Alignment from Exonerate_protein2genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt Alignment from Exonerate_coding2genome GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt Alignment from GeneWise GATGTAATTAATACTTTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGATGACGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTAGTAGAAAGCCTTGTCTACCTTCAGACACAAAAG tagtaattgtgccatgggaaatttgcattctttatgtgttttgactgcagGATGTAATTAATACATTATTGCCTAAAGTCTTAACTCGAATAATCGAAGGACTCCAGGACCTTGACGATGATGTTAGAGCTGTTGCTGCAGCATCCCTGGTTCCTGTGGTAGAAAGCCTTGTCTACCTTCAGACACAAAAGgtgcgtaaaattctcccagcatgctcctcctatagagtatgtttacattt #### Btaf1_ID7240_19 --> 0 - 0 Original Alignment GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact Alignment from CESAR GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact Alignment from Spaln_aa2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact Alignment from Spaln_nt2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact Alignment from Pairagon GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact Alignment from Exonerate_protein2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact Alignment from Exonerate_coding2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact Alignment from GeneWise GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG tgcaatgatgtttcttttccctaaatctgcttcacgctcttcattcacagGAGTGTAAAGCTGTTACCCTAGCCGTGCAACCACGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGTATTAACAATAGATCAAGCAAACGACCTGgtgtgctaaaagagtcaagaagtaactttcttaattctagagcatgaact #### Btaf1_ID7241_20 --> 0 - 1 Original Alignment GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAg atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAggtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac Alignment from CESAR GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAg atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAggtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac Alignment from Spaln_aa2Genome GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAG atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGgtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac Alignment from Spaln_nt2Genome GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAG atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGgtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac Alignment from Pairagon GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAG atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGgtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac Alignment from Exonerate_protein2genome GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAG atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGgtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac Alignment from Exonerate_coding2genome GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAG atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGgtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac Alignment from GeneWise GTAACCACTATTTTTAATGAAGTCACATCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGTTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTACTGCAGCTGAGAGTACACACGTTTGCTGCGTGTGCTGTTGTGAGCTTGCAGCAGCTTCCGGAGAAACTAAATCCTATCATAAAACCATTAATGGAAACGATTAAAAAAGAAGAGAATACGCTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCAGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACGTGTCCAGTACCAACACAAAGTGGCCAGGAAAATTCTAAAG atttgggattattgtaattaatgatttttctaactgcatcccactccaagGTAACCACTATTTTTAATGAAGTCACGTCAACTTTTGATTTAAATCCTCAAGTGTTACAGCAGCTAGATAGTAAACGGCATCAGGTCCAAATGACAGTTGCAGAGACGAACCAGGAGTGGCAAGTATTGCAGCTGAGAGTACACACGTTTGCTGCATGTGCTGTTGTGAGCTTACAGCAGCTTCCAGAGAAGCTAAATCCTATCATAAAACCATTAATGGAGACGATTAAAAAAGAAGAGAATACACTAGTGCAGAACTATGCTGCTCAGTACATAGCTAAGCTTCTTCAGCGGTGTACAACAAGGACACCATGCCCTAATTCAAAAGTTATTAAGAACCTCTGTAGCTCTCTTTGTGTGGACCCATACCTCACTCCCTGTGTTACATGTCCTGTACCAACACAAAGTGGCCAGGAAAATTCTAAAGgtatgcaatttattcttctacctcactccctgtggtacatgtccagtaac #### Btaf1_ID7242_21 --> 2 - 0 Original Alignment gaTCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtaggaTCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga Alignment from CESAR gaTCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtaggaTCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga Alignment from Spaln_aa2Genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtagGATCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga Alignment from Spaln_nt2Genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtagGATCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga Alignment from Pairagon GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtagGATCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga Alignment from Exonerate_protein2genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtagGATCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga Alignment from Exonerate_coding2genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtagGATCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga Alignment from GeneWise GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG tgcctttagctcatcaacattttgattaagtcagtgtctgtcccttgtagGATCCAACTCAGAAAAGGACGGAATGCACCATACTGTCACCAAGCACAGAGGGATCATGACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAGGCAATTAAAGCTCAGATAGCTGATCTTCCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAGgtaaggaggctgcccttcccccatgaatgtttttattcttaagtacttga #### Btaf1_ID7244_23 --> 2 - 0 Original Alignment atGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagatGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat Alignment from CESAR atGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagatGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat Alignment from Spaln_aa2Genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat Alignment from Spaln_nt2Genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGT---TGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat Alignment from Pairagon ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGT---TGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat Alignment from Exonerate_protein2genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat Alignment from Exonerate_coding2genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat Alignment from GeneWise ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccaatttagccccgaattacaaagtcttctcaaatatgatctcacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTGGTGAATTCCCTGCAAGTGTTCGAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtaatatgtgttgtgttttttgaaggataattttaatccttgaaat #### Btaf1_ID7245_24 --> 0 - 1 Original Alignment CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCt ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCtgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga Alignment from CESAR CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCt ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCtgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga Alignment from Spaln_aa2Genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga Alignment from Spaln_nt2Genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga Alignment from Pairagon CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga Alignment from Exonerate_protein2genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga Alignment from Exonerate_coding2genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga Alignment from GeneWise CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT ttttaagtattctctagtaagtaacatagaaaggccatgttgttatctagCTGGTACAGCACTTGCCTCATCTTTATATGTGCCTCCAGTACCCTAGCACTGCAGTGAGGCACATGGCAGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTGAAGAAGGTACTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCTgtgggtttgaatctgtcaaatctgaagtggtttatttattttatttaaga #### Btaf1_ID7247_26 --> 0 - 0 Original Alignment GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg Alignment from CESAR GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg Alignment from Spaln_aa2Genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg Alignment from Spaln_nt2Genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg Alignment from Pairagon GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg Alignment from Exonerate_protein2genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg Alignment from Exonerate_coding2genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg Alignment from GeneWise GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG ttatgtattactatctagtccaattctaggagttctgtttctctcctcagGCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCAACACTTTTTAGAGCAATTGTTAGACGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCCAAACTCAGGAAATATCAGCAAgtaagaaataccagcaacaggagtgtctaaatgcaaagccacttttcttg #### Btaf1_ID7248_27 --> 0 - 2 Original Alignment GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGaggtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt Alignment from CESAR GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGaggtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt Alignment from Spaln_aa2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt Alignment from Spaln_nt2Genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt Alignment from Pairagon GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt Alignment from Exonerate_protein2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt Alignment from Exonerate_coding2genome GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt Alignment from GeneWise GATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tgctctgcttacattttacataaatttcttaataacttttacttttgtagGATGGTGTGAACTGGTTAGCCTTTCTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagtgaagacaaaatttgaaaatgatggccctaaatcctgatcaatgt #### Btaf1_ID7255_34 --> 0 - 0 Original Alignment GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa Alignment from CESAR GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa Alignment from Spaln_aa2Genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa Alignment from Spaln_nt2Genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa Alignment from Pairagon GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa Alignment from Exonerate_protein2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa Alignment from Exonerate_coding2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa Alignment from GeneWise GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttataatttgtgctcctttgcctgcagGCGTTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCTCAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACTGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCTTGAAACAGgtgggtgtatctgtaaatgataaaatagtttatttgatcaaataattaaa #### Btrc_ID9457_7 --> 1 - 0 Original Alignment gGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtaggGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga Alignment from CESAR gGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtaggGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga Alignment from Spaln_aa2Genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga Alignment from Spaln_nt2Genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga Alignment from Pairagon GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga Alignment from Exonerate_protein2genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga Alignment from Exonerate_coding2genome GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga Alignment from GeneWise GGGACAGTACTTATTCAAAAACAAACCTCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG tgctgccaagatccatgttacctcctcagtccttctcttcctccctgtagGGGACAGTACTTATGCAAGAACAAACCTCCTGATGAGAACACTCCTCCCAACTCCTTCTATAGAGCACTTTATCCTAAAATTATACAAGACATTGAGgtacccaagtgtaagttacaatcatatctttactaggaatgcatgtgaga #### Btrc_ID9461_10 --> 1 - 0 Original Alignment aGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagaGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt Alignment from CESAR aGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagaGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt Alignment from Spaln_aa2Genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagAGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt Alignment from Spaln_nt2Genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagAGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt Alignment from Pairagon AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagAGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt Alignment from Exonerate_protein2genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagAGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt Alignment from Exonerate_coding2genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagAGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt Alignment from GeneWise AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gcactcagggcatgtgttgcactaaatgatatttaatgatgattcaccagAGTGTGGGATATAAATGCAGGTGTGATGCTAAATACATTGATTCACCACTGTGAAGCTGTTCTTCACCTCCGATTCAATAATGGTATGATGGTGACCTGTTCTAAAGACCGTTCCATAGCTGTGTGGGATATGGCTTCCCCAACCGACATAACTCTCAGGAGGGTGCTGGTTGGACACCGAGCTGCGGTTAATGTTGTAGACTTTGATGACAAGTACATAGTTTCTGCCTCTGGAGATAGAACCATAAAGgtaccagatcatttttctatatattcactagctgcaataggagtttgtgt #### C030046E11Rik_ID6299_13 --> 0 - 0 Original Alignment ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc Alignment from CESAR ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc Alignment from Spaln_aa2Genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc Alignment from Spaln_nt2Genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc Alignment from Pairagon ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc Alignment from Exonerate_protein2genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc Alignment from Exonerate_coding2genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc Alignment from GeneWise ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctaccaatctgatatgtaggtatagttcacagccttgcttccgtcacagATCTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGAgtgagcatgtctcccattagtgttgtgtggtcatcctggggggtgagccc #### C030046E11Rik_ID6300_14 --> 0 - 0 Original Alignment TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag Alignment from CESAR TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag Alignment from Spaln_aa2Genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag Alignment from Spaln_nt2Genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag Alignment from Pairagon TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag Alignment from Exonerate_protein2genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag Alignment from Exonerate_coding2genome TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag Alignment from GeneWise TTTTCAGCTATTGATAAACTTGGACAAAATATTGCTGTGGCTGGCAAGTTTGGATTTGCTCATTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAG ttagatactttaggccatgtgcggtcaaccatgctcgtctctcttgacagTTTTCAGCTATTGATAAACTTGGACAAAATATTGCCGTGGCTGGCAAGTTTGGATTTGCTCACTATTCTCTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACTCAGgtaatcccttattttttttttttcattttttatgaagaataaatttcaag #### C030046E11Rik_ID6304_18 --> 0 - 0 Original Alignment GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt Alignment from CESAR GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt Alignment from Spaln_aa2Genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt Alignment from Spaln_nt2Genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt Alignment from Pairagon GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt Alignment from Exonerate_protein2genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt Alignment from Exonerate_coding2genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt Alignment from GeneWise GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT gtctttcttgttcagaaacttgttttcacccttgctctctcctactgcagGCTTGTGATGCAGAAAGCATAATGCTGAACCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagaacagctagacggcacttaagcttaggggtgacgaggacagtggt #### C030046E11Rik_ID6305_19 --> 0 - 0 Original Alignment CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga Alignment from CESAR CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga Alignment from Spaln_aa2Genome CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga Alignment from Spaln_nt2Genome CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga Alignment from Pairagon CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga Alignment from Exonerate_protein2genome CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga Alignment from Exonerate_coding2genome CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga Alignment from GeneWise CTGCCGTTCTGTCCTCCTGTTGTACTAGCCCAGTCGGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCGGGGATGAAGGTTTGGCTCCCTCTCTTCCCCAGGGATCATCGCAAGCCCCACTCCTTCCTGTCCCAGCGGATCATGCTGCCGTTTCATATCAACATTTACCCCCTGGCCGTTCTGTTTGAAGACGCGTTGGTCCTTGGTGCTGTCAACGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGGGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGCCAGCTCCTGGTCAGGAACCTGGGCGAGCAGGCGCTCCTCCTGGCTCAGTCCTGCGCTGCGTTACCTTACTTCCCTCACGTGTTGGAGCTGATGCTCCACGAGGTGCTGGAGGAAGAAGCTACCTCCCGGGAGCCCATTCCCGACCCGCTGCTGCCCACCGTGGCCAAGTTCATCACCGAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACTGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAG ctatatttattgggaaaactaggcctcaactctcatttctcccttcccagCTGCCATTCTGTCCTCCTGTTGTGCTAGCCCAGTCAGTGGAAAATGTCTGGACTACCTGTCGAGCAAACAAACAAAAGCGTCACCTTCTTGAGGCCCTCTGGTTGAGCTGTGGTGGTGCAGGGATGAAGGTATGGCTCCCTCTTTTCCCTAGGGATCATCGCAAGCCCCATTCCTTCCTGTCCCAGCGGATCATGCTGCCATTTCATATCAACATTTACCCCCTGGCTGTTCTGTTTGAAGATGCACTGGTCCTTGGTGCTGTCAATGACACTCTCCTCTATGATTCTCTGTATACCCGGAGCAGTGCCAGAGAGCAGCTGGAGGTGCTCTTTCCCTTCTGTGTTGTGGAGAGGACCTCTCAGATCTACCTCCACCATATCCTCCGTCAGCTGCTGGTCAGGAACCTGGGTGAGCAGGCACTCCTATTGGCTCAGTCCTGTGCTGCATTACCGTACTTCCCTCATGTGTTGGAGCTGACGCTCCATGAGGTGCTGGAGGAAGAGGCTACCTCCCGGGAGCCCATTCCTGACCCACTGCTGCCAACTGTGGCCAAGTTCATCACCAAGTTCCCCCTCTTCCTTCAGACAGTCGTGCACCGTGCCAGGAAGACTGAGTATGCTCTGTGGAATTACCTTTTTGCAGCTGTCGGAAACCCCAAGGATTTATTTGAGGAATGCTTGATGGCTCAGGATTTGGATACAGCTGCCTCTTACCTTATTATCTTACAGgtaagatgcattgtgaagggataaggatcattggtcataattttcagaga #### C030046E11Rik_ID6306_20 --> 0 - 0 Original Alignment AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt Alignment from CESAR AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt Alignment from Spaln_aa2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt Alignment from Spaln_nt2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt Alignment from Pairagon AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt Alignment from Exonerate_protein2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt Alignment from Exonerate_coding2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt Alignment from GeneWise AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG cctttcaatcttattaaatgtaatgttaaatttttaaatatgttttgtagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCCGAGACCCCTCCATCCACACCTACATCTCAGgtgagaataaattatacagattttgtatgcatacagcctcaaagcatctt #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGGTAAGTTTTCCCCTACTTATTTCCACatggcagcatttctgaatagtgtg #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from CESAR TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Spaln_aa2Genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Spaln_nt2Genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Pairagon TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Exonerate_protein2genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from Exonerate_coding2genome TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc Alignment from GeneWise TTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGAC tgcaaggtgaggtggtgtaaaggacatgtgtggtgttctgttccctgcagTTTGACAAGGATAGGGATGGATGGATCATGGTGGCAGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtaagaaaccctacagacacctcacccatgcctctattactgtgaagctc #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTGGGCCCTGAGGAGTTGGAGg gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGggtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from CESAR GATCGTGAACTGGGCCCTGAGGAGTTGGAGg gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGggtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Spaln_aa2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Spaln_nt2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Pairagon GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Exonerate_protein2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from Exonerate_coding2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt Alignment from GeneWise GATCGTGAACTGGGCCCTGAGGAGTTGGAGG gaggctagaagacgtggcaaatggagagccgaccacctcgccacggccagGATCGTGAACTGGGCCCTGAGGAGTTGGAGGgtaagggtccctcactgttgttgggaggtggaaaggaactctggtacagt #### Cacul1_ID13280_3 --> 1 - 0 Original Alignment tTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagtTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata Alignment from CESAR tTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagtTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata Alignment from Spaln_aa2Genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagTTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata Alignment from Spaln_nt2Genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagTTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata Alignment from Pairagon TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagTTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata Alignment from Exonerate_protein2genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagTTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata Alignment from Exonerate_coding2genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagTTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata Alignment from GeneWise TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG ttagcgaagaagtgtgtggtatgtttcttctgtcccgtgtctccccacagTTGTGTGTATAAGTGTGTGTGCCAGCAGCATTCAGAGCAAATGTACAGTGACCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAACTGCAGgtactgagtggagtgcaccggtgtttgttgctttgaaagtttgtgacata #### Capn1_ID1360_16 --> 2 - 0 Original Alignment acAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagacAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag Alignment from CESAR acAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagacAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag Alignment from Spaln_aa2Genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagACAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag Alignment from Spaln_nt2Genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagACAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag Alignment from Pairagon ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagACAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag Alignment from Exonerate_protein2genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagACAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag Alignment from Exonerate_coding2genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagACAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag Alignment from GeneWise ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT tttttgttgttggttctaagccccccaacctgtgttctcttcctgtgcagACAAAGACCTGCGCACGAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACGGTGAACCTCATGGATgtgagttttcacctacaccggtgtctgatggagtttggagtgaggctaag #### Capn1_ID1363_13 --> 1 - 0 Original Alignment gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcaggGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from CESAR gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcaggGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Spaln_aa2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Spaln_nt2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Pairagon GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Exonerate_protein2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from Exonerate_coding2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctccctatgtccccaggcccctctgacttgtctgtctgtctgtctggcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag Alignment from GeneWise ---------------------------------------------------GAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG CTCCCTATGTCCCCAGGCCCCTCTGACTTGTCTGTCTGTCTGTCTGGCAGGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgggcagttcctttgtctcccctgatattcaatgggatgtgagctccag #### Capn1_ID1364_12 --> 0 - 2 Original Alignment CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCca agacagggtggattactacagccccttatcactcccattcttccttctagCTGGCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCcagtaagacctttgccacctccctatgtccccaggcccctctgactgaatct Alignment from CESAR CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCca agacagggtggattactacagccccttatcactcccattcttccttctagCTGGCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCcagtaagacctttgccacctccctatgtccccaggcccctctgacttgtctg Alignment from Spaln_aa2Genome CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacagggtggattactacagccccttatcactcccattcttccttctagCTGGCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCCAgtaagacctttgccacctccctatgtccccaggcccctctgactgaatct Alignment from Spaln_nt2Genome CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacagggtggattactacagccccttatcactcccattcttccttctagCTGGCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCCAgtaagacctttgccacctccctatgtccccaggcccctctgactgaatct Alignment from Pairagon CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacagggtggattactacagccccttatcactcccattcttccttctagCTGGCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCCAgtaagacctttgccacctccctatgtccccaggcccctctgactgaatct Alignment from Exonerate_protein2genome GTCCCTCGGGAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacagggtggattactacagccccttatcactcccatTCTTCCTTCTAGCTGGCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCCAgtaagacctttgccacctccctatgtccccaggcccctctgactgaatct Alignment from Exonerate_coding2genome GTCCCTCGGGAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacagggtggattactacagccccttatcactcccatTCTTCCTTCTAGCTGGCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCCAgtaagacctttgccacctccctatgtccccaggcccctctgactgaatct Alignment from GeneWise GTCCCTCGGGAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacagggtggattactacagccccttatcactcccattcttccttctagCTG------------GCAGGTCAGCCTGTGCACTTGAAGCGTGACTTATTCCTGGCTAACGCTTCTCGTGCACAGACAGAGCACTTCATCAACCTTCGGGAAGTCAGTAACCATATCCGCCTGCCACCTGGGGAGTACATAGTCGTGCCCTCAACCTTCGAGCCCAACAAAGAAGGTGACTTCCTACTTCGTTTCTTCTCAAAGAAGAAGGCTGGGACCCAgtaagacctttgccacctccctatgtccccaggcccctctgactgaatct #### Capn1_ID1367_9 --> 1 - 1 Original Alignment gATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAg attcatggtggaggactgtgggtggttccaacacctctccctctgcccaggATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAagtactggcttgggaggggcatcacgggggtgagcagacccacctggctga Alignment from CESAR gATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAg attcatggtggaggactgtgggtggttccaacacctctccctctgcccaggATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAagtactggcttgggaggggcatcacgggggtgagcagacccacctggctga Alignment from Spaln_aa2Genome GATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAG attcatggtggaggactgtgggtggttccaacacctctccctctgcccagGATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAAgtactggcttgggaggggcatcacgggggtgagcagacccacctggctga Alignment from Spaln_nt2Genome GATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAG attcatggtggaggactgtgggtggttccaacacctctccctctgcccagGATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAAgtactggcttgggaggggcatcacgggggtgagcagacccacctggctga Alignment from Pairagon GATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAG attcatggtggaggactgtgggtggttccaacacctctccctctgcccagGATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAAgtactggcttgggaggggcatcacgggggtgagcagacccacctggctga Alignment from Exonerate_protein2genome GATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAG attcatggtggaggactgtgggtggttccaacacctctccctctgcccagGATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAAgtactggcttgggaggggcatcacgggggtgagcagacccacctggctga Alignment from Exonerate_coding2genome GATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAG attcatggtggaggactgtgggtggttccaacacctctccctctgcccagGATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAAgtactggcttgggaggggcatcacgggggtgagcagacccacctggctga Alignment from GeneWise GATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCACCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAG attcatggtggaggactgtgggtggttccaacacctctccctctgcccagGATGTCATTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATCTGCAACCTTACACCGGATGCCCTTAAGAGCAGGACACTCCGGAATTGGAATACGACATTTTATGAGGGCACCTGGCATCGGGGAAGCACCGCTGGAGGTTGCAGGAACTACCCAAgtactggcttgggaggggcatcacgggggtgagcagacccacctggctga #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACaggtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACaggtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAGgtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAGgtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg Alignment from Pairagon GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAGgtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAGgtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg Alignment from Exonerate_coding2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAGgtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgtgggacaaggtcatgacacgtacctttctctgctcctgcagGTAACTTACCAGGGTCAGCGGGTGAACCTTATCCGAATGTGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAGgtgaggggaggttgggggaatcccggagatgtggtggacacccatgcttg #### Capn1_ID1371_5 --> 1 - 0 Original Alignment aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagaGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa Alignment from CESAR aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagaGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa Alignment from Spaln_aa2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagAGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa Alignment from Spaln_nt2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagAGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa Alignment from Pairagon AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagAGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa Alignment from Exonerate_protein2genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagAGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa Alignment from Exonerate_coding2genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagAGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa Alignment from GeneWise AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gacactggtccttcttgatgatgctacctctccatctaactgctcctcagAGTGAATGGCAGCTATGAGGCTCTTTCAGGGGGCTGCACCTCAGAGGCCTTTGAGGACTTTACTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGTTAGGCTGCTCCATAAATgtgagctgtggctaagttcccctgacaaacctccattctgaaggttctaa #### Capn1_ID1372_4 --> 0 - 2 Original Alignment CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTaa gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTaagtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt Alignment from CESAR CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTaa gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTaagtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt Alignment from Spaln_aa2Genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTAAgtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt Alignment from Spaln_nt2Genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTAAgtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt Alignment from Pairagon CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTAAgtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt Alignment from Exonerate_protein2genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTAAgtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt Alignment from Exonerate_coding2genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTAAgtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt Alignment from GeneWise CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA gtactttgagggccagccccagggcagggaccatcccttctgcccttcagCTGTGGCAGTTTGGGGAGTGGGTTGATGTGGTCATAGATGCATTACTGCCCACCAAAGACGGGAAACTGGTGTTTGTGCACTCGGCCCAGGGCAATGACTTCTGGAGCGCACTGCTGGAGAAGGCCTACACTAAgtaaggagccagagcacctcttctgtctccaggggcggagaggtagaagt #### Capn1_ID1374_3 --> 2 - 0 Original Alignment ggGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacaggaGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg Alignment from CESAR ggGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacaggaGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg Alignment from Spaln_aa2Genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacagGAGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg Alignment from Spaln_nt2Genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacagGAGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg Alignment from Pairagon GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacagGAGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg Alignment from Exonerate_protein2genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacagGAGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg Alignment from Exonerate_coding2genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacagGAGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg Alignment from GeneWise GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG ttgtaggcagatccaaagagcaagtctgagccccatggctttccttacagGAGACTGTTGGCTCCTGGCTGCCATTGCTTCCCTCACCCTCAATGAGGCTATTTTGCACCGAGTGGTTCCCTATGGCCAGAGCTTTCAGGATGGCTATGCTGGCATCTTTCATTTTCAAgtaggggtccctgcacccaccctgggcaggaggaatgtctgactttaggg #### Casp7_ID12088_3 --> 2 - 1 Original Alignment gtATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAg cctgatctgactagagtctgtttacccctggtttgtttttctcttcacaggtATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGtgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta Alignment from CESAR gtATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAg cctgatctgactagagtctgtttacccctggtttgtttttctcttcacaggtATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGtgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta Alignment from Spaln_aa2Genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG cctgatctgactagagtctgtttacccctggtttgtttttctcttcacagGTATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGTgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta Alignment from Spaln_nt2Genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG cctgatctgactagagtctgtttacccctggtttgtttttctcttcacagGTATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGTgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta Alignment from Pairagon GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG cctgatctgactagagtctgtttacccctggtttgtttttctcttcacagGTATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGTgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta Alignment from Exonerate_protein2genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG cctgatctgactagagtctgtttacccctggtttgtttttctcttcacagGTATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGTgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta Alignment from Exonerate_coding2genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG cctgatctgactagagtctgtttacccctggtttgtttttctcttcacagGTATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGTgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta Alignment from GeneWise GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG cctgatctgactagagtctgtttacccctggtttgtttttctcttcacagGTATGGACGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTTTTGAAGTGACTATTCACAATGACTGCTCTTGTGCAAAGATGCAGGATCTGCTTAGAAAGTgtgagtgtgagctgtgcatatggtgaggtgagcggttcctatctgtccta #### Casp7_ID12089_4 --> 2 - 0 Original Alignment ccTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagccTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc Alignment from CESAR ccTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagccTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc Alignment from Spaln_aa2Genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagCCTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc Alignment from Spaln_nt2Genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagCCTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc Alignment from Pairagon CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagCCTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc Alignment from Exonerate_protein2genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagCCTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc Alignment from Exonerate_coding2genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagCCTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc Alignment from GeneWise CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG acatttctgaatatcaccccagacactcagccttcccgtgtctgttgcagCCTCTACGGAGGACCACAGCAACTCGGCCTGCTTTGCTTGTGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTATGGGAAAGATGGTGCAACACCCATAAAGGACCTAACAGCTCATTTTAGGGGAGACCGATGCAAAATCCTGTTAGAAAAACCCAAACTCTTCTTCATTCAGgtatgtttggggccagtggtactgcaagtgggaaaagatgctaacagggc #### Catsper1_ID930_7 --> 2 - 2 Original Alignment gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaaggtGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCaagtaaggcactaacccgctccactgcccaaccactaggtctttataacaca Alignment from CESAR gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaaggtGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCaagtaaggcactaacccgctccactgcccaaccactaggtctttataacaca Alignment from Spaln_aa2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaagGTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCAAgtaaggcactaacccgctccactgcccaaccactaggtctttataacaca Alignment from Spaln_nt2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaagGTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCAAgtaaggcactaacccgctccactgcccaaccactaggtctttataacaca Alignment from Pairagon GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaagGTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCAAgtaaggcactaacccgctccactgcccaaccactaggtctttataacaca Alignment from Exonerate_protein2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaagGTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCAAgtaaggcactaacccgctccactgcccaaccactaggtctttataacaca Alignment from Exonerate_coding2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaagGTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCAAgtaaggcactaacccgctccactgcccaaccactaggtctttataacaca Alignment from GeneWise GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA ccacttgaacgggtggcaccttggacacttttttcttttctatgatgaagGTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTCATCCAATACTTTATCTTCCTCAAgtaaggcactaacccgctccactgcccaaccactaggtctttataacaca #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagcCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagcCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc #### Cbwd1_ID5364_6 --> 2 - 0 Original Alignment gtATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cataatactgatgactttaaaacatggcctcagcctatttttccacacaggtATAATAACTGTTGTTGATTCAAAATATGGACTAAAAgtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg Alignment from CESAR gtATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cataatactgatgactttaaaacatggcctcagcctatttttccacacaggtATAATAACTGTTGTTGATTCAAAATATGGACTAAAAgtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg Alignment from Spaln_aa2Genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cataatactgatgactttaaaacatggcctcagcctatttttccacacagGTATAATAACTGTTGTTGATTCAAAATATGGACTAAAAgtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg Alignment from Spaln_nt2Genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cataatactgatgactttaaaacatggcctcagcctatttttccacacagGTATAATAACTGTTGTTGATTCAAAATATGGACTAAAAgtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg Alignment from Pairagon GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cataatactgatgactttaaaacatggcctcagcctatttttccacacagGTATAATAACTGTTGTTGATTCAAAATATGGACTAAAAgtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg Alignment from Exonerate_protein2genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cataatactgatgactttaaaacatggcctcagcctatttttccacacagGTATAATAACTGTTGTTGATTCAAAATATGGACTAAAAgtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg Alignment from Exonerate_coding2genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cataatactgatgactttaaaacatggcctcagcctatttttccacacagGTATAATAACTGTTGTTGATTCAAAATATGGACTAAAAgtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg Alignment from GeneWise cataatactgatgactttaaaacatggcctcagcctatttttccacacaggtataataactgttgttgattcaaaatatggactaaaagtcagtagcaaataaatgtttaaacaccatgtttacactcccaaaaactg #### Cbwd1_ID5368_3 --> 2 - 2 Original Alignment ggAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCaa aggtccattactatgttgttctggctaggagcagacccgtgtctctccagggAGTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCaagtaagttcagcatctactctatgcctgctgagtaactttggatttctgat Alignment from CESAR ggAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCaa aggtccattactatgttgttctggctaggagcagacccgtgtctctccagggAGTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCaagtaagttcagcatctactctatgcctgctgagtaactttggatttctgat Alignment from Spaln_aa2Genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtccattactatgttgttctggctaggagcagacccgtgtctctccagGGAGTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtaagttcagcatctactctatgcctgctgagtaactttggatttctgat Alignment from Spaln_nt2Genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtccattactatgttgttctggctaggagcagacccgtgtctctccagGGAGTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtaagttcagcatctactctatgcctgctgagtaactttggatttctgat Alignment from Pairagon GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtccattactatgttgttctggctaggagcagacccgtgtctctccagGGAGTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtaagttcagcatctactctatgcctgctgagtaactttggatttctgat Alignment from Exonerate_protein2genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtccattactatgttgttctggctaggagcagacccgtgtctctccagGGAGTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtaagttcagcatctactctatgcctgctgagtaactttggatttctgat Alignment from Exonerate_coding2genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtccattactatgttgttctggctaggagcagacccgtgtctctccagGGAGTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtaagttcagcatctactctatgcctgctgagtaactttggatttctgat Alignment from GeneWise TGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtccattactatgttgttctggctaggagcagacccgtgtctctccagggagTGCTGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtaagttcagcatctactctatgcctgctgagtaactttggatttctgat #### Cbwd1_ID5369_2 --> 2 - 1 Original Alignment gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg gttttctcaaagctagtgtttgacctattaaacactgtactcttttacaggtGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt Alignment from CESAR gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg gttttctcaaagctagtgtttgacctattaaacactgtactcttttacaggtGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt Alignment from Spaln_aa2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gttttctcaaagctagtgtttgacctattaaacactgtactcttttacagGTGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt Alignment from Spaln_nt2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gttttctcaaagctagtgtttgacctattaaacactgtactcttttacagGTGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt Alignment from Pairagon GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gttttctcaaagctagtgtttgacctattaaacactgtactcttttacagGTGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt Alignment from Exonerate_protein2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gttttctcaaagctagtgtttgacctattaaacactgtactcttttacagGTGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt Alignment from Exonerate_coding2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gttttctcaaagctagtgtttgacctattaaacactgtactcttttacagGTGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt Alignment from GeneWise GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gttttctcaaagctagtgtttgacctattaaacactgtactcttttacagGTGCTGGAAAGACAACACTTCTGAACTACATCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagctcaatgactgtaagcttgcagtaatgtttgggccccttt #### Ccdc147_ID10409_8 --> 2 - 0 Original Alignment agGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagagGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc Alignment from CESAR agGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagagGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc Alignment from Spaln_aa2Genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagAGGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc Alignment from Spaln_nt2Genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagAGGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc Alignment from Pairagon AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagAGGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc Alignment from Exonerate_protein2genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagAGGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc Alignment from Exonerate_coding2genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagAGGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc Alignment from GeneWise AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG ctattctccttggattcattacattaccctctcttcttccttctgcccagAGGTGGAGTCTTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgttagttcattgcaacactggtacacaataccttctactcactatctggc #### Ccdc147_ID10418_11 --> 0 - 0 Original Alignment GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg Alignment from CESAR GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg Alignment from Spaln_aa2Genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg Alignment from Spaln_nt2Genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg Alignment from Pairagon GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg Alignment from Exonerate_protein2genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg Alignment from Exonerate_coding2genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg Alignment from GeneWise GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG gggcagtctgcttaccttatttgccaggagtctgttccttctgattttagGATGAAATCACAGAAATGAGGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAACTGAAGGAAGAAATCTCTGCCAAGGAAGCTGCCCTTGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAGgtcagtgccttacttagagcagtggctatagctggcagctttgggattgg #### Ccdc147_ID10422_12 --> 0 - 0 Original Alignment GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg Alignment from CESAR GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg Alignment from Spaln_aa2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg Alignment from Spaln_nt2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg Alignment from Pairagon GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg Alignment from Exonerate_protein2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg Alignment from Exonerate_coding2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg Alignment from GeneWise GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgcttagaccactcatctgtgtaatgtgttctaaattttccccattccagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATCGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagcggtccttgtgacccccacccccaacataaatcctttgccctttg #### Ccdc172_ID12726_6 --> 2 - 2 Original Alignment ttCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGcg ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagttCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGcggtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata Alignment from CESAR ttCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGcg ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagttCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGcggtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata Alignment from Spaln_aa2Genome TTCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata Alignment from Spaln_nt2Genome TTCT---TAAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata Alignment from Pairagon TTC---TTAAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata Alignment from Exonerate_protein2genome TTCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata Alignment from Exonerate_coding2genome TTCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata Alignment from GeneWise --GTTCTTAAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG ctaacatctgcaatctttcaatgattgtcactctcctgttgtgtccatagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtaagctgctgttagtgcttattcatgaagttagctgttttgagtttata #### Ccdc172_ID12729_7 --> 1 - 0 Original Alignment gCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccaggCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat Alignment from CESAR gCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccaggCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat Alignment from Spaln_aa2Genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccagGCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat Alignment from Spaln_nt2Genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccagGCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat Alignment from Pairagon GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccagGCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat Alignment from Exonerate_protein2genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccagGCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat Alignment from Exonerate_coding2genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccagGCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat Alignment from GeneWise GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG cgtacagaggatcaagtttgtattcttgatctgtgcttgtctctcaccagGCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtaattcccggctgctctcttctcctttctccagcagtttctgctgctat #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg cctccctgtgtttggatgacccttctccgccttgcattcatccactctagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAggtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg cctccctgtgtttggatgacccttctccgccttgcattcatccactctagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAggtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG cctccctgtgtttggatgacccttctccgccttgcattcatccactctagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGACGAGACCCTGGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGGGGGACGAAGCCCTGCATCATTCAGTCCAGGCGACACCCCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTCGGGGCACCGAGTACCTACAGCAAAGgtaaggcatagagtccttgaattgaagctcccattattttgtgtgagtgg #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcaggAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG ttctcgccttctcttcctccttataccttaaacgtgctgttctatgtcagGAAGGGCAGCTGGCTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACAGAAAGCTTGGGGGGCCCTCTGGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtgagtttaagggtctagtagccaggatgtccctgtgccatgtctcacac #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaactttaacacatcacaacaacccctctcacagAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat Alignment from GeneWise --------------------------------------------------AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GGGATGGCAGGGCTAACAACTTTAACACATCACAACAACCCCTCTCACAGAATGCCACACTGGTGGCAGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTCGAGGGACAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGAGTCAGCGGGCTCAGGAGCACAGTAGTTGCCTGCAGgtgagcatgagccacctggactccagcctattagtgtcattttatgccat #### Ccdc88b_ID1834_15 --> 0 - 2 Original Alignment GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGag tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGaggtatggatagtggctgagggacaggagctgatagatgagtaaggactagg Alignment from CESAR GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGag tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGaggtatggatagtggctgagggacaggagctgatagatgagtaaggactagg Alignment from Spaln_aa2Genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAG tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGgtatggatagtggctgagggacaggagctgatagatgagtaaggactagg Alignment from Spaln_nt2Genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAG tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGgtatggatagtggctgagggacaggagctgatagatgagtaaggactagg Alignment from Pairagon GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAG tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGgtatggatagtggctgagggacaggagctgatagatgagtaaggactagg Alignment from Exonerate_protein2genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAG tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGgtatggatagtggctgagggacaggagctgatagatgagtaaggactagg Alignment from Exonerate_coding2genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAG tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGgtatggatagtggctgagggacaggagctgatagatgagtaaggactagg Alignment from GeneWise GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAG tgagtgctgccttcttccccccctgctcctctttcccatttttccaatagGAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTAGGGGACCGGCTGGAGCACCTGCAGGAGGAGCTAGAACAGTCTGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAGGAGAACCAGCACCAGAGgtatggatagtggctgagggacaggagctgatagatgagtaaggactagg #### Ccdc88b_ID1835_14 --> 0 - 0 Original Alignment CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc Alignment from CESAR CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc Alignment from Spaln_aa2Genome CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc Alignment from Spaln_nt2Genome CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc Alignment from Pairagon CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc Alignment from Exonerate_protein2genome CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc Alignment from Exonerate_coding2genome CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc Alignment from GeneWise CACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGCCACCTGTGCCTAACAGGGATCCAGCAACTCCCTCGGCCCTCCATCACAGCCCCCAAAGCCCCGCTTGCCAGATAGGAGGTGAAGGCTCCGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCTGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGAGAGTCCTCTCCAGATGGTATCTCAGGATCCCCAGACCTCAGACCAAGCTCTCCAAGAATCAGACCCTACTGTGGAGACACATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATCGTCTGGGACCCACCACAGGGTCCAGAGGTCAGAATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGAAGCAGGGAGGCTCCCCAAGGGGAGTTGGTACACAAGGCCCAGGTCCTAAAACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAGCTCACCCTCCGGGAGCCTCTGAAGGACCAGAAGGCCCTGGATCGGGAACTAGAACTATCCAAGCAACAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAACTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGGAGCCAACCCCGGGGGAGACCCTGGTCAGTGCTATCCCAGAGGAGCAGGCCCTCAGAGATGAGGTAGCACAACTAAGGAGAGAGGTTGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAAAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAGCTGGCCCAAGCTCGCAGAACAGAGGCGGAGGCCCATCAGGAGGCAGAGGCCCAGGCCCGGGAGCAGGCCCGTCTGCGTGAAGCAGTGGATACGGCTAGCTTGGAGCTGGAGGCTGCATCTCGTGAGAGGGAGGCCCTGGCAGAGGCACTAGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACGTGACGGGCCCAGGCTGCGGGCTCAAGTTGAGGCTGCCGAGCAGCAGGTGCAGGCTCTGGAGAGCCAGGTCCGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCGGAGAAACAAGCCCTTCGGGAG cccacccatatactattattaactcctacttccttctcctttctcaacagCACCCTCTGCTGGAGGAGCAGAGGGAGAACTCCAGGCAGTCACCTGTGCCTAACAGGGATCCAGCAACCCCCTCAGCCCTTCATCACAGCCCCCAGAGTCCTGCTTGCCAGATAGGAGGTGAAGGTTCAGAATCTTTGGACCTGCCTTCTCCAGCATCATACTCCGACATCACAAGGTCACCCAAGTGTTCTCAGGCACCCGACTCACACCCAGAGTTGGGTAGTCCTCTTCAGATGGTATCTCAGGATCCACAGACCTCGGACCAAGCTCTGCAAGAATCAGACCCTACTGTGGAGACTCATCAGTGCCTGGAGAAGTCTGGTCATAGAGTCCCTCTCCAGAGTCCCATTGTCTGGGACCCACCACAGGGTCCAGAGGTCAGGATTGAAGTGCAGGAGTTGCTAGGAGAGACTGGGAGCAGAGAGGCTCCCCAAGGGGAGTTGGTGCACAAGGCCCAGGTCCTAAGACAAGAGAGCCCCAAATGCAGGCCCAGATCTGCTGAACTCACCCTTCGGGAGCCACTGAAGGACCAAAAGGCCCTTGATCGTGAACTAGAACTGTCCAAACAGCAGAAAGAGACAGGAAGGCATGAACAGAGGCCCAAGGGGTTGGAGAGTAAGCTGGGCCCTCAGAAACCACAGCAGACATCAGAAGGGGTGCCTGATGCCTGGTCCAGGGAGCACCCAACCCCAGGAGAGACACTGGTTAGTGCTATCCCAGAGGAGCAGGCCCTCAAAGATGAGGTCGCACAGCTAAGGAGAGAGGATGCAGGCCTTGAGGTTAAACTGCAAGCCCAAGCCCAGAGACTGGAGGCCCGAAGTGCAGAGGCTCTCTGCCTCTCTGAGGAACTCGCCCAAGCTCGTAGAACAGAAGCAGAGGCGCATCAGGAGGCAGAGGCCCAAGCTCGGGAGCAGACTCGTCTGCGTGAAGCAGTGGATACGGCGAGCTTGGGGCTGGAGGCTGCATCTCGTGAGAGGGAAGCCCTGGCAGAGGCACTGGCAGCAGCAGGCAGGGAGCGAAGGCAGTGGGAACATGACGGGCCCAGGCTGCGGGCCCAAGTTGAGGCTGCTGAGCAGCAGGTGCAGGCTCTTGAGAGTCAAGTCTGCTGTCATCTGGAGGAAGCTGAGAGGGAACATGCAGAGAAACAAGCACTTTGGGAGgtgagtggggtatagcagcaagtcaagaaattgaggcctgggacagctgc #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgcaaagggggtttgtaacatgcttcttacctgccaacctcttcccacagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAGCCCACTTGCTGCTGCCTGAGGCTCCTGCTAATGCATCTGCGGAGGGTGTCTCACACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtaagtgtctgaaggctcattaaggggtcagtgagatcctgacaggtcct #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagatTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagatTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggtgacttaagtgttttgttgttcaggtctcgaactctgactgttctagATTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGGTGACTTAAGTGTTTTGTTGTTCAGGTCTCGAACTCTGACTGTTCTAGATTATGCATTTCTAAATTATGCACCTTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGTCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtgagccgcttttctcttgcttttataattcgcaatcagcattttccttc #### Ccs_ID665_3 --> 2 - 1 Original Alignment gtGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAc cacatgcaatgccagtcccctgctgattttcttctttatcttccttctaggcGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTAcgtgagtgactggttataatctgagcttggactcttggggctggaccataa Alignment from CESAR gtGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAc cacatgcaatgccagtcccctgctgattttcttctttatcttccttctaggcGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTAcgtgagtgactggttataatctgagcttggactcttggggctggaccataa Alignment from Spaln_aa2Genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC cacatgcaatgccagtcccctgctgattttcttctttatcttccttctagGCGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTACgtgagtgactggttataatctgagcttggactcttggggctggaccataa Alignment from Spaln_nt2Genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC cacatgcaatgccagtcccctgctgattttcttctttatcttccttctagGCGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTACgtgagtgactggttataatctgagcttggactcttggggctggaccataa Alignment from Pairagon GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC cacatgcaatgccagtcccctgctgattttcttctttatcttccttctagGCGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTACgtgagtgactggttataatctgagcttggactcttggggctggaccataa Alignment from Exonerate_protein2genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC cacatgcaatgccagtcccctgctgattttcttctttatcttccttctagGCGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTACgtgagtgactggttataatctgagcttggactcttggggctggaccataa Alignment from Exonerate_coding2genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC cacatgcaatgccagtcccctgctgattttcttctttatcttccttctagGCGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTACgtgagtgactggttataatctgagcttggactcttggggctggaccataa Alignment from GeneWise GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC cacatgcaatgccagtcccctgctgattttcttctttatcttccttctagGCGTACAAAACGTGGATGTTCAGTTGGAGAACCAGATGGAGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAGGCACTCCTGGAAAGCTCAGGGAGGCAGGCTGTACTCAAGGGTATGGGGAGTAGCCAATTACgtgagtgactggttataatctgagcttggactcttggggctggaccataa #### Ccs_ID666_2 --> 0 - 1 Original Alignment TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAg ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAggtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag Alignment from CESAR TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAg ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAggtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag Alignment from Spaln_aa2Genome TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAG ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAGgtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag Alignment from Spaln_nt2Genome TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAG ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAGgtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag Alignment from Pairagon TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAG ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAGgtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag Alignment from Exonerate_protein2genome TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAG ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAGgtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag Alignment from Exonerate_coding2genome TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAG ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAGgtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag Alignment from GeneWise TTGGAGTTTGCAGTGCAGATGAGTTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAG ataggaggtgatgagtaaggtcatgtacgttcttgctttcctccctgcagCTGGAGTTTGCAGTGCAGATGAGCTGTCAGAGCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAGgtacaggcagtttgcgtccagctgaattccagttgcatagggggggaaag #### Cd5_ID2995_3 --> 2 - 1 Original Alignment atATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAg tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcagatATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAggtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg Alignment from CESAR atATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAg tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcagatATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAggtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg Alignment from Spaln_aa2Genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg Alignment from Spaln_nt2Genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg Alignment from Pairagon ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg Alignment from Exonerate_protein2genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg Alignment from Exonerate_coding2genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg Alignment from GeneWise GATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG tgacccaaccctccgtcacctgatgccttgtggtctcttttcctttgcaGATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCGCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGCTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAGgtatacgatagagtatggcacactgagcagagacttgggagggtacgtgg #### Cd6_ID3013_11 --> 2 - 1 Original Alignment gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAggtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from CESAR gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAggtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Spaln_aa2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Spaln_nt2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCAC---------------CTCGTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Pairagon GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTC---------------GTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Exonerate_protein2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Exonerate_coding2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from GeneWise GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg #### Cd6_ID3016_8 --> 2 - 1 Original Alignment ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagccGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAggtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact Alignment from CESAR ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagccGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAggtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact Alignment from Spaln_aa2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagCCGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact Alignment from Spaln_nt2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagCCGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact Alignment from Pairagon CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagCCGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact Alignment from Exonerate_protein2genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagCCGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact Alignment from Exonerate_coding2genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagCCGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact Alignment from GeneWise CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG gacagacacaatggaagttatgcaaaacttcacgttgcattcccttgcagCCGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAAGCAGGGATCAATAACTACCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaggagtcacctgtggggaaggcatggggaaaacagggagggtaaact #### Cd6_ID3017_7 --> 2 - 1 Original Alignment aaTCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACg tgatgaactgatcctctatctctttcattctatgtttcttccacctccagaaTCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATggtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga Alignment from CESAR aaTCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACg tgatgaactgatcctctatctctttcattctatgtttcttccacctccagaaTCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATggtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga Alignment from Spaln_aa2Genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcattctatgtttcttccacctccagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATGgtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga Alignment from Spaln_nt2Genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcattctatgtttcttccacctccagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATGgtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga Alignment from Pairagon AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcattctatgtttcttccacctccagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATGgtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga Alignment from Exonerate_protein2genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcattctatgtttcttccacctccagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATGgtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga Alignment from Exonerate_coding2genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcattctatgtttcttccacctccagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATGgtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga Alignment from GeneWise AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcattctatgtttcttccacctccagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCCACCATCTTCGTAGTTATTCTTCTCTTGAGAGCGAAAGGACAGTATGgtaagtatgacgtctccagtttctgcacaagaaactgcagttgtgaggga #### Cd6_ID3019_5 --> 2 - 1 Original Alignment agCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAg gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagagCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAggtacgtcttccacagcctctccacaactagaatttgtctacagattttgt Alignment from CESAR agCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAg gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagagCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAggtacgtcttccacagcctctccacaactagaatttgtctacagattttgt Alignment from Spaln_aa2Genome AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagAGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAGgtacgtcttccacagcctctccacaactagaatttgtctacagattttgt Alignment from Spaln_nt2Genome AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagAGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAGgtacgtcttccacagcctctccacaactagaatttgtctacagattttgt Alignment from Pairagon AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagAGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAGgtacgtcttccacagcctctccacaactagaatttgtctacagattttgt Alignment from Exonerate_protein2genome AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagAGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAGgtacgtcttccacagcctctccacaactagaatttgtctacagattttgt Alignment from Exonerate_coding2genome AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagAGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAGgtacgtcttccacagcctctccacaactagaatttgtctacagattttgt Alignment from GeneWise AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG gcagggattgggctcaaaatatttagcttaacagtgtctgtattacacagAGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGTGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACAGTGTGTGACAGCGAGTGGTACCCATCTAAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGTGGATCAGCAGTGGCGCGGCCCAGGGGGCTGCCACACTCCCTGGATGGTAGAATGTACTACCCCTGCAAAGGACAGGAGCCTGCCCTCAGCACCTGTTCCTGGCAATTCAATAACTCCAACCTGTGCAGTCAGTCACGGGCAGCCAGGGCTGTCTGCTCAGgtacgtcttccacagcctctccacaactagaatttgtctacagattttgt #### Cd6_ID3021_3 --> 2 - 1 Original Alignment agGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAg atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagagGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAggtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt Alignment from CESAR agGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAg atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagagGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAggtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt Alignment from Spaln_aa2Genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagAGGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAGgtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt Alignment from Spaln_nt2Genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagAGGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAGgtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt Alignment from Pairagon AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagAGGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAGgtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt Alignment from Exonerate_protein2genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagAGGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAGgtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt Alignment from Exonerate_coding2genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagAGGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAGgtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt Alignment from GeneWise AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG atgaaggacaaagatctgatgaagtccccatttctaccccctctccctagAGGACCGACTGGGGATCCGCCTGGTGAATGGGAGCAGTCGCTGCAGTGGCTCTGTGAAGGTTCTACTCGAGTCCTGGGAGCCTGTGTGCGCTGCACACTGGAACAGGGCTGCTACGGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCCCCCACCTCTGAGCTTCCTCCAGGAGCCACTTCTGGGAACCCAAGTAGTGCTGGGAATACAACATGGGCACGGGCACCAACCAAGAGATGCAGGGGAGCTAATTGGCAGTTCTGCAAGGTGCAAGACCAGGAATGTAGCAGTGACAGGCGTCTGGTGTGGGTCACCTGTGCAGgtgagcaagccaggtgacatatctgtcctacgacctcaagtttaaacatt #### Cdc37l1_ID6198_5 --> 0 - 0 Original Alignment AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc Alignment from CESAR AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc Alignment from Spaln_aa2Genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc Alignment from Spaln_nt2Genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc Alignment from Pairagon AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc Alignment from Exonerate_protein2genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc Alignment from Exonerate_coding2genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc Alignment from GeneWise AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgagctgagagctcacctcaattcatggcttgtccttactttccagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTGGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtatgtagtgacctgttgctgttaaatgagaaggttgggcaaagctacgc #### Cdc42bpg_ID1572_2 --> 2 - 0 Original Alignment ccAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagccAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGAGAT---GTTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg Alignment from CESAR ccAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagccAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGAGAT---GTTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg Alignment from Spaln_aa2Genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagCCAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGA---GATGTTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg Alignment from Spaln_nt2Genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagCCAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGA---GATGTTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg Alignment from Pairagon CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagCCAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGAGATG---TTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg Alignment from Exonerate_protein2genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagCCAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGA---GATGTTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg Alignment from Exonerate_coding2genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagCCAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGA---GATGTTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg Alignment from GeneWise CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG agactgtaagaaaaaaaaaacccttgctgcacctgtgatgtcgtccacagCCAGCCCTTTTGTAACAAAAGTGAAAGAGTTGCGTCTACAGAGAGAT---GTTGAGATCTTGAAGGTGATTGGCAGAGGTGCCTTTGGGGAAgtgagtaagtcttgggaggatgaggagtaggggctttcctgttggtttgg #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGC---GAACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGC---GAACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagaggtgagcactctgacttggctttgcatctgtttttctgatccctagGAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGTTGTGCCAAGCG---AACCGGCAGGAAGAAGTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGTCTGCTGCAGCTGGCCAGCTTCAGACCCTGAATACTCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAGgtaagcggtgaggcattcgaagggtccagggcattgggagccccatatgg #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ggtgagaaatatagtaaccctgaccttcgcatctctcttgacttctccagAAGGATTCTGCTAAGGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtatgtccccataccaaacctgaataaaggtaggtaggatttctccccca #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagccTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from CESAR ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagccTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Pairagon CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc Alignment from GeneWise CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG acacttactactcggactttgaccctccactgtggatgcttttttaacagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCAgtgagttgtgggggaccctggaggctggctgtgggaacgagggccagtcc #### Cdc42bpg_ID1599_29 --> 2 - 1 Original Alignment acCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATg tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagacCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATggtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg Alignment from CESAR acCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATg tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagacCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATggtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg Alignment from Spaln_aa2Genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg Alignment from Spaln_nt2Genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg Alignment from Pairagon ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg Alignment from Exonerate_protein2genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg Alignment from Exonerate_coding2genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg Alignment from GeneWise ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatattcgtctgttattggtgtacaacttccttcttctctgtctgcagACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaggagagggctgtgattagattagtgcaacacaacggcacgggaattg #### Cdc42bpg_ID1606_36 --> 2 - 0 Original Alignment taGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagtaGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt Alignment from CESAR taGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagtaGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt Alignment from Spaln_aa2Genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt Alignment from Spaln_nt2Genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt Alignment from Pairagon TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt Alignment from Exonerate_protein2genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt Alignment from Exonerate_coding2genome TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt Alignment from GeneWise TAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGCGAATCAGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG ccttagattgaaacaggtagtctgtccaccattaccattgtgtgtttcagTAGTGAAGAGGAAACCTTGGACATCTCTGTCCAGTGAATTAGTATCCTGCCCCCAGGGATCCCTGAGCCCTGCAGCATCCCTGATACAGgtaagacaaagggcagggctttccttctaccattcatggtctaggcactt #### Cdca5_ID1430_4 --> 0 - 0 Original Alignment GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg Alignment from CESAR GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg Alignment from Spaln_aa2Genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg Alignment from Spaln_nt2Genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg Alignment from Pairagon GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg Alignment from Exonerate_protein2genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg Alignment from Exonerate_coding2genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg Alignment from GeneWise GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG agaactgggcttagctattgattgatcacgcccgcctccccttgccacagGTCCCAGATGTCCACACGGTTAGAAGAACTCCTAGGgtaaattcagttctatttgttactgtttattgtatttactgttagagagg #### Cep78_ID3973_13 --> 0 - 2 Original Alignment CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgggtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca Alignment from CESAR CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgggtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca Alignment from Spaln_aa2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca Alignment from Spaln_nt2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca Alignment from Pairagon CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca Alignment from Exonerate_protein2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca Alignment from Exonerate_coding2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca Alignment from GeneWise CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgattttgaagaattacaccattttctttatctctctgcccacagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagcccacaggggggagattcctcagtggcttcaatcgtagcctacca #### Cep78_ID3980_6 --> 2 - 1 Original Alignment caCTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTg accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagcaCTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCggtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct Alignment from CESAR caCTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTg accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagcaCTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCggtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct Alignment from Spaln_aa2Genome CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagCACTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCGgtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct Alignment from Spaln_nt2Genome CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagCACTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCGgtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct Alignment from Pairagon CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagCACTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCGgtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct Alignment from Exonerate_protein2genome CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagCACTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCGgtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct Alignment from Exonerate_coding2genome CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagCACTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCGgtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct Alignment from GeneWise CACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCTTTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTG accatgaccactgtggggtcagtaagtaaactataatatttgcttttcagCACTTGACCTGCAACAGTGCGGCCTTACCAGCGAAGGGGCCAAGGCATTACTGGAGGCCCTGGAAACCAACAGAACTCTGGTCGTTCTGGATATAAGGAAGAACCCACTTATCGgtaagctgtttgcttaaaaatcaattgacaaatggcatagaagtgattct #### Cep78_ID3981_5 --> 0 - 1 Original Alignment TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAg atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTggtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta Alignment from CESAR TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAg atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTggtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta Alignment from Spaln_aa2Genome TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAG atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTGgtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta Alignment from Spaln_nt2Genome TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAG atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTGgtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta Alignment from Pairagon TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAG atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTGgtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta Alignment from Exonerate_protein2genome TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAG atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTGgtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta Alignment from Exonerate_coding2genome TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAG atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTGgtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta Alignment from GeneWise TATCAAACCATGAGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCTTACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCTTAGTGAGGACCTGTGGCTTCGAG atgccggatttacttctctgatgtctgacttccctttttcttcccttaagTATCAAACAATGAGAAGGCATGAAGAAACCTGGGCAGAGAGCCTCCGCTACAGGAGACCCGATCTAGACTGCATGGCTGGCTTACGGCGCATCACACTAAACTGTAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCTGACTCTCTTAGTGAGGACCTGTGGCTTCGTGgtaaggtcaatgaaccttggaaaagggaaactgtaccagcctttcctgta #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAagtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAagtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca #### Cep78_ID3984_2 --> 2 - 0 Original Alignment gtGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcaggtACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag Alignment from CESAR gtGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcaggtACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag Alignment from Spaln_aa2Genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag Alignment from Spaln_nt2Genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag Alignment from Pairagon GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag Alignment from Exonerate_protein2genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag Alignment from Exonerate_coding2genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag Alignment from GeneWise GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ggtagacattactaattttactgatcacatctgatctccatactcctcagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCGGTGAGATCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGGCTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAACAAAGgtaggacttgttgacccatggcacccgcaacatttttaagctgttttcag #### Chuk_ID8911_17 --> 2 - 2 Original Alignment atCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGag tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagatCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGaggtaggcaaactgctttattccctccttaatgtcattatatttgttttcct Alignment from CESAR atCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGag tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagatCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGaggtaggcaaactgctttattccctccttaatgtcattatatttgttttcct Alignment from Spaln_aa2Genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagATCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtaggcaaactgctttattccctccttaatgtcattatatttgttttcct Alignment from Spaln_nt2Genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagATCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtaggcaaactgctttattccctccttaatgtcattatatttgttttcct Alignment from Pairagon ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagATCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtaggcaaactgctttattccctccttaatgtcattatatttgttttcct Alignment from Exonerate_protein2genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagATCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtaggcaaactgctttattccctccttaatgtcattatatttgttttcct Alignment from Exonerate_coding2genome ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagATCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtaggcaaactgctttattccctccttaatgtcattatatttgttttcct Alignment from GeneWise ATCACTTGTACAGCGACAGCACAGAGATGGTGAAGATCATCGTGCACACCGTGCAGAGTCAGGACCGTGTTCTCAAGGAGCTGTTTGGTCACCTGAG tgttctgcaaaaaagaggttttatagtcttctctttctaatctaaaccagATCACTTATATAGTGACAGCACAGAGATGGCGAAGATAATTGTGCACACTGTGCAAAGTCATGACCGTGTACTCAAGGAGCTGTTTGGACACCTGAGgtaggcaaactgctttattccctccttaatgtcattatatttgttttcct #### Chuk_ID8913_15 --> 0 - 2 Original Alignment GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTct ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCctgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt Alignment from CESAR GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTct ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCctgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt Alignment from Spaln_aa2Genome GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTCT ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCCTgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt Alignment from Spaln_nt2Genome GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTCT ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCCTgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt Alignment from Pairagon GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTCT ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCCTgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt Alignment from Exonerate_protein2genome GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTCT ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCCTgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt Alignment from Exonerate_coding2genome GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTCT ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCCTgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt Alignment from GeneWise GTTGGTGTCATTGGTTATCTTGAGGATCAAATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGACGACGCCAGGGAGACTTGATGGAGTCTCT ttctatgtggtggtgagcttgccactatatacctctcttctcacccacagGTTGGTGTCATTGGTTATCTCGAGGATCAGATTATGTCTTTGCACACTGAAATCATGGAGCTGCAGAAGAGCCCCTATGGGCGACGCCAGGGAGATCTGATGGAGCCCCTgtaaccatgtctctatgctattggtcttgattttagaatactttctttgt #### Clcf1_ID429_2 --> 2 - 0 Original Alignment ggGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC ttttttagctccaggcgcttgatcatgcagggagctttgctgttttgcagcgGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc Alignment from CESAR ggGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC ttttttagctccaggcgcttgatcatgcagggagctttgctgttttgcagcgGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc Alignment from Spaln_aa2Genome GGGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC ttttttagctccaggcgcttgatcatgcagggagctttgctgttttgcagCGGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc Alignment from Spaln_nt2Genome GGGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC ttttttagctccaggcgcttgatcatgcagggagctttgctgttttgcagCGGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc Alignment from Pairagon GGGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC ttttttagctccaggcgcttgatcatgcagggagctttgctgttttgcagCGGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc Alignment from Exonerate_protein2genome GCAGGGGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC ttttttagctccaggcgcttgatcatgcagggagctttgctgttttGCAGCGGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc Alignment from Exonerate_coding2genome GCAGGGGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC ttttttagctccaggcgcttgatcatgcagggagctttgctgttttGCAGCGGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc Alignment from GeneWise GACCTCCGAGCAGGGGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTGCAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCACCCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTAC tccaggcgcttgatcatgcagggagctttgctgtttt---------GCAGCGGACTCATGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTACAGTGCCAGCTCTTAATCACATGGGAGATCCAAGCCCTGGCCCCTCCATCCAGAAAACATATGACCTCACCCGCTACCTGGAGCATCAACTGCGCAGCTTAGCCGGGACATATgtgtggttcccccttggcaagaggaggtggtggctttggggaagataagc #### Cnnm1_ID8741_9 --> 2 - 1 Original Alignment gcAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAACAGCAg tttttttagcttcctctaggcacagtggaacctgccctattttttcccaggcAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTT------CCAGCAggtaagagctgggtccagaacagaaaggggagcttgtcacctcgcaagcag Alignment from CESAR gcAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAACAGCAg tttttttagcttcctctaggcacagtggaacctgccctattttttcccaggcAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTTCCA------GCAggtaagagctgggtccagaacagaaaggggagcttgtcacctcgcaagcag Alignment from Spaln_aa2Genome GCAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAACAGCAG tttttttagcttcctctaggcacagtggaacctgccctattttttcccagGCAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTTCCAGCAGGTAAGAgctgggtccagaacagaaaggggagcttgtcacctcgcaagcag Alignment from Spaln_nt2Genome GCAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAACAGCAG tttttttagcttcctctaggcacagtggaacctgccctattttttcccagGCAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTTC------CAGCAGgtaagagctgggtccagaacagaaaggggagcttgtcacctcgcaagcag Alignment from Pairagon GCAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAACAGCAG tttttttagcttcctctaggcacagtggaacctgccctattttttcccagGCAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTTC------CAGCAGgtaagagctgggtccagaacagaaaggggagcttgtcacctcgcaagcag Alignment from Exonerate_protein2genome GCAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAA tttttttagcttcctctaggcacagtggaacctgccctattttttcccagGCAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTTCCAGCAGgtaagagctgggtccagaacagaaaggggagcttgtcacctcgcaagcag Alignment from Exonerate_coding2genome GCAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAA tttttttagcttcctctaggcacagtggaacctgccctattttttcccagGCAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTTCCAGCAGgtaagagctgggtccagaacagaaaggggagcttgtcacctcgcaagcag Alignment from GeneWise GCAGCCGCTCGGATGGTCTGAGAAGCCCAGGCGAGGTTGTGTACCTGAGGATGGAGGAGATGGCCTTCCCCCAAGAAGAGATGCCCAACTTTGAGGAGCACAGGTCACAGCAAGTCTCGCTGTCCCCTGTCGCAGTTCCTACAACAGCAG tttttttagcttcctctaggcacagtggaacctgccctattttttcccagGCAGCCGCTCAGACGGTCTG---AGCCCAGGTGAAGTTGTTTACCTGCGGATGGAGGAGATGGCATTCCCCCAAGAGGAGATGCCCAACTTTGAGAAGCACAGGTCACAGCAAGTCTCACTGTCCCCTGTTGCAGTTCCA------GCAGgtaagagctgggtccagaacagaaaggggagcttgtcacctcgcaagcag #### Cnnm2_ID10021_2 --> 2 - 1 Original Alignment ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagggAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACagtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga Alignment from CESAR ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagggAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACagtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga Alignment from Spaln_aa2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga Alignment from Spaln_nt2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga Alignment from Pairagon GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga Alignment from Exonerate_protein2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga Alignment from Exonerate_coding2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga Alignment from GeneWise GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgaccttttctcaaacattctcttttacacagGGAAATCCCACCTGGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACAgtaacatcctttacctctgtgcccttgttgcccctgctcttgcgcattga #### Cnnm2_ID10027_5 --> 0 - 1 Original Alignment GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAggttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg Alignment from CESAR GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAggttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg Alignment from Spaln_aa2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAGgttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg Alignment from Spaln_nt2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAGgttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg Alignment from Pairagon GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAGgttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg Alignment from Exonerate_protein2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAGgttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg Alignment from Exonerate_coding2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAGgttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg Alignment from GeneWise GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG gactggccttctatgttgttaaagctgaccatttccattttggtttccagGGGAAGGCGGAGGTGGAAGCTGAGAAAGAAGGCATGAAGTTTGAAGCCAGTGCCTTCTCCTACTATGGTGTAATGGCCCTCACAGCGCCTCCAGgttcgaagccctggcacctatttcaggaaggcccagccctcctccctctg #### Col17a1_ID10274_48 --> 2 - 1 Original Alignment gtCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGc aactcttttgtccacaacattctctggcaactgaacgtttttctccccaggtCCTGATGTTCGCAGCTTC---ATTGGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGGC---TTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAAcgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct Alignment from CESAR gtCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGc aactcttttgtccacaacattctctggcaactgaacgtttttctccccaggtCCTGATGTTCGCAGCTTCATT---GGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGGC---TTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAAcgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct Alignment from Spaln_aa2Genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC aactcttttgtccacaacattctctggcaactgaacgtttttctccccagGTCCTGATGTTCGCAGCTTCATT---GGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGGC---TTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAACgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct Alignment from Spaln_nt2Genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC aactcttttgtccacaacattctctggcaactgaacgtttttctccccagGTCCTGATGTTCGCAGCTTCA---TTGGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGG---CTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAACgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct Alignment from Pairagon GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC aactcttttgtccacaacattctctggcaactgaacgtttttctccccagGTCCTGATGTTCGCAGCTTCA---TTGGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGG---CTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAACgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct Alignment from Exonerate_protein2genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC aactcttttgtccacaacattctctggcaactgaacgtttttctccccagGTCCTGATGTTCGCAGCTTCATT---GGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGGC---TTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAACgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct Alignment from Exonerate_coding2genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC aactcttttgtccacaacattctctggcaactgaacgtttttctccccagGTCCTGATGTTCGCAGCTTCATT---GGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGGC---TTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAACgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct Alignment from GeneWise GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC aactcttttgtccacaacattctctggcaactgaacgtttttctccccagGTCCTGATGTTCGCAGCTTCATT---GGCCCTCCAGGCCCTCCGGGACCTCAGGGACCACCTGGAGATGGC---TTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGACGGGGCACTTCCTACAGCTCTTCCATGGGCACAGGTGGAACCAACGGAGGTTCCCAAGGTGAGGGTGGAGCCTATGGTGCAGGAGATGGGAGTCCCTATGGTACTGACATTGGCCCAGGCGGAGGCTACGGGGCAGCTGCAGGTGGCGGTATATATGGCATGAATGGTGACTCGTTCCGGGATGGCTTCACTGGGGATCTAGACTACAACAAGTTGGCTGTGCGGGTGTCAGAGAGCATGCAACgtacattggaacctgtggccctctgagggggaagcaaattgttcgcacct #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcaggtTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAggtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcaggtTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAggtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcagGTTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAGgtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcagGTTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAGgtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcagGTTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAGgtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcagGTTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAGgtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa Alignment from Exonerate_coding2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcagGTTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAGgtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG ccttcctaagcccaattgagcctaaaactgtaatgttttctttcccgcagGTTCTGGGATCAGCTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTACCAGGAACATCCTACGAAGAGTTACTGTCCATGCTCCGAGgtaagacaaaagcaaaatgtccatcaaacggttcaggatggaaactgaaa #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa gatagacactattgggcttctcgattcagaacaacatgtcttggtatcaggaAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa gatagacactattgggcttctcgattcagaacaacatgtcttggtatcaggaAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGT---------GTCAGTGGAGAAGGGTCTCTACTGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gatagacactattgggcttctcgattcagaacaacatgtcttggtatcagGAAATGATGTGTGGCAATACTTACGTCAAAATCTGGTGGGTCCTCCCAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCTCTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtgaataatcaggattaagggcaaccaaccccactgagattgccccagta #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctaggtGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctaggtGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagggGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAggtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagggGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAggtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Exonerate_coding2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from GeneWise GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga #### Col17a1_ID10295_27 --> 2 - 1 Original Alignment gtGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAg cccatcattgataggttttccctagacaccattgtacctgtctcccacaggtGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAggtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag Alignment from CESAR gtGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAg cccatcattgataggttttccctagacaccattgtacctgtctcccacaggtGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAggtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag Alignment from Spaln_aa2Genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcattgataggttttccctagacaccattgtacctgtctcccacagGTGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAGgtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag Alignment from Spaln_nt2Genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcattgataggttttccctagacaccattgtacctgtctcccacagGTGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAGgtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag Alignment from Pairagon GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcattgataggttttccctagacaccattgtacctgtctcccacagGTGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAGgtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag Alignment from Exonerate_protein2genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcattgataggttttccctagacaccattgtacctgtctcccacagGTGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAGgtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag Alignment from Exonerate_coding2genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcattgataggttttccctagacaccattgtacctgtctcccacagGTGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAGgtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag Alignment from GeneWise GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcattgataggttttccctagacaccattgtacctgtctcccacagGTGACCAGGGTGAGAAAGGACCCAGAGGTCTCACAGgtgggtgctacccaggtatttaacttatcccatgaccttctaggacttag #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cacagcatcgagaggaagtctagactgataatgctatggttcctccccaggtATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTggtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac Alignment from CESAR gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cacagcatcgagaggaagtctagactgataatgctatggttcctccccaggtATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTggtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcatcgagaggaagtctagactgataatgctatggttcctccccagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcatcgagaggaagtctagactgataatgctatggttcctccccagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac Alignment from Pairagon GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcatcgagaggaagtctagactgataatgctatggttcctccccagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcatcgagaggaagtctagactgataatgctatggttcctccccagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcatcgagaggaagtctagactgataatgctatggttcctccccagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac Alignment from GeneWise GTCAAGGACCTAAAGGAGACCGAGGCCTTCCTGGGACCCCAGGTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcatcgagaggaagtctagactgataatgctatggttcctccccagGT------------------------------------------ATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaagtgctcttgtccttctatgtacatttcctcgtgtatcccttcctac #### Col17a1_ID10302_20 --> 2 - 1 Original Alignment gaGACCGAGGCCTTCCTGGGACCCCAg aggactaggccacattctccatacatctgttatttgcatttgttatttaggaGACCGAGGCCTTCCTGGGACCCCAggtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc Alignment from CESAR gaGACCGAGGCCTTCCTGGGACCCCAg aggactaggccacattctccatacatctgttatttgcatttgttatttaggaGACCGAGGCCTTCCTGGGACCCCAggtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc Alignment from Spaln_aa2Genome GAGACCGAGGCCTTCCTGGGACCCCAG aggactaggccacattctccatacatctgttatttgcatttgttatttagGAGACCGAGGCCTTCCTGGGACCCCAGgtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc Alignment from Spaln_nt2Genome GAGACCGAGGCCTTCCTGGGACCCCAG aggactaggccacattctccatacatctgttatttgcatttgttatttagGAGACCGAGGCCTTCCTGGGACCCCAGgtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc Alignment from Pairagon GAGACCGAGGCCTTCCTGGGACCCCAG aggactaggccacattctccatacatctgttatttgcatttgttatttagGAGACCGAGGCCTTCCTGGGACCCCAGgtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc Alignment from Exonerate_protein2genome GAGACCGAGGCCTTCCTGGGACCCCAG aggactaggccacattctccatacatctgttatttgcatttgttatttagGAGACCGAGGCCTTCCTGGGACCCCAGgtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc Alignment from Exonerate_coding2genome GAGACCGAGGCCTTCCTGGGACCCCAG aggactaggccacattctccatacatctgttatttgcatttgttatttagGAGACCGAGGCCTTCCTGGGACCCCAGgtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc Alignment from GeneWise aggactaggccacattctccatacatctgttatttgcatttgttatttaggagaccgaggccttcctgggaccccaggtgagcggcctgcagtgatccctagtgcgggttgcttcagtattatgagc #### Col17a1_ID10304_18 --> 2 - 1 Original Alignment ggAATCTCAGAGGAAGTCCTGGTCCAAAAg aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagggAATCCCAGTGGAAGCCCCAGCCCTAAAggtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt Alignment from CESAR ggAATCTCAGAGGAAGTCCTGGTCCAAAAg aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagggAATCCCAGTGGAAGCCCCAGCCCTAAAggtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt Alignment from Spaln_aa2Genome GGAATCTCAGAGGAAGTCCTGGTCCAAAAG aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagGGAATCCCAGTGGAAGCCCCAGCCCTAAAGgtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt Alignment from Spaln_nt2Genome GGAATCTCAGAGGAAGTCCTGGTCCAAAAG aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagGGAATCCCAGTGGAAGCCCCAGCCCTAAAGgtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt Alignment from Pairagon GGAATCTCAGAGGAAGTCCTGGTCCAAAAG aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagGGAATCCCAGTGGAAGCCCCAGCCCTAAAGgtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt Alignment from Exonerate_protein2genome aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagggaatcccagtggaagccccagccctaaaggtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt Alignment from Exonerate_coding2genome aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagggaatcccagtggaagccccagccctaaaggtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt Alignment from GeneWise aagagagatggagactttcaacttgcttggtgctggtgctctgatttcagggaatcccagtggaagccccagccctaaaggtaaatgagtggccccacctttcccctaacggatgcgtgatttcctgggt #### Col17a1_ID10305_17 --> 2 - 1 Original Alignment cgGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACg gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagcgGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACggtacagagggcctaggtgcaggcccagatagcacactgggctgttgcctt Alignment from CESAR cgGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACg gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagcgGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACggtacagagggcctaggtgcaggcccagatagcacactgggctgttgcctt Alignment from Spaln_aa2Genome CGGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACG gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagCGGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACGgtacagagggcctaggtgcaggcccagatagcacactgggctgttgcctt Alignment from Spaln_nt2Genome CGGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACG gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagCGGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACGgtacagagggcctaggtgcaggcccagatagcacactgggctgttgcctt Alignment from Pairagon CGGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACG gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagCGGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACGgtacagagggcctaggtgcaggcccagatagcacactgggctgttgcctt Alignment from Exonerate_protein2genome CGGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACGGGAATCTCAGAGGAAGTCCTGGTCCAAAAG gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagCGGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACGGTACAGAGGGCCTAGGTGCAGGCCCAGATAgcacactgggctgttgcctt Alignment from Exonerate_coding2genome CGGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACGGGAATCTCAGAGGAAGTCCTGGTCCAAAAG gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagCGGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACGGTACAGAGGGCCTAGGTGCAGGCCCAGATAgcacactgggctgttgcctt Alignment from GeneWise CGGAGGAGGTAAGAAAGCTGAAGGCCCGCGTGGAGGAGCTGGAAAAGACCAAGGTGCTATATCATGACGTCCAGATGGACAAAAGCAACAGGGACCGCCTCCAGGCCGAGGCACCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTGGACGGCTACAGCCAGGAGGCCATCTGGCTGTTTGTAAGGAACAAGCTGATGACCGAGCAGGAGAACGGGAATCTCAGAGGAAGTCCTGGTCCAAAAGGTGACATGGGGA gtaagtaatggacttagtcttcagtgattcacaagctgcttctgctccagCGGAGGAGGTAAGAAAACTGAAGGCCCGTGTGGAGGAGCTGGAAAGGACCAAGGTGCTATATCAT---GTCCAGATGGACAAAAGCAACAGGGACCGTCTCCAGGCTGAGGCTCCCAGCCTGGGACCTGGATTAGGCAAGGCTGAGCTTGACGGCTGCAGCCAGGAGGCTATCTGGTTATTTGTAAGGAACAAGCTGATGACTGAGCAGGAGAACGGTACAGAGGGCCTAGGTGCAGGCCCAGATAGCACACTGGGCTgttgcctt #### Col17a1_ID10307_15 --> 2 - 1 Original Alignment gaGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAg ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcaggaGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAggtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt Alignment from CESAR gaGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAg ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcaggaGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAggtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt Alignment from Spaln_aa2Genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcagGAGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAGgtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt Alignment from Spaln_nt2Genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcagGAGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAGgtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt Alignment from Pairagon GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcagGAGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAGgtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt Alignment from Exonerate_protein2genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcagGAGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAGgtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt Alignment from Exonerate_coding2genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcagGAGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAGgtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt Alignment from GeneWise GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG ccaaacttgtgtatgtgcttttaggagaaaaagttgtgtgttttcatcagGAGACCTAAATACCGTGTCAACAAAGAGCAAGATGACGTCAGCAGgtgaggaagaatagtggtggagcactcagctcttctgtgttactgcccgt #### Col17a1_ID10315_7 --> 2 - 1 Original Alignment agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt attgactccctcatccacaacatcctggtaatctatacctctctttgcagagAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGAtgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa Alignment from CESAR agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt attgactccctcatccacaacatcctggtaatctatacctctctttgcagagAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGAtgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa Alignment from Spaln_aa2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT attgactccctcatccacaacatcctggtaatctatacctctctttgcagAGAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGATgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa Alignment from Spaln_nt2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT attgactccctcatccacaacatcctggtaatctatacctctctttgcagAGAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGATgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa Alignment from Pairagon AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT attgactccctcatccacaacatcctggtaatctatacctctctttgcagAGAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGATgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa Alignment from Exonerate_protein2genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT attgactccctcatccacaacatcctggtaatctatacctctctttgcagAGAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGATgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa Alignment from Exonerate_coding2genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT attgactccctcatccacaacatcctggtaatctatacctctctttgcagAGAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGATgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa Alignment from GeneWise AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT attgactccctcatccacaacatcctggtaatctatacctctctttgcagAGAGCAAAATTCGAGTTAGGTTGCAGAGCGCATCACCATCTACCAGATgtgagcgatcatggtactacccccatcagagtgtttgagaaacagagtaa #### Col17a1_ID10317_5 --> 2 - 1 Original Alignment ggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCg aaggataggataagtagccatatgtcctcctgactacttttctcccccagggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTagtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat Alignment from CESAR ggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCg aaggataggataagtagccatatgtcctcctgactacttttctcccccagggAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTagtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat Alignment from Spaln_aa2Genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG aaggataggataagtagccatatgtcctcctgactacttttctcccccagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTAgtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat Alignment from Spaln_nt2Genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG aaggataggataagtagccatatgtcctcctgactacttttctcccccagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTAgtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat Alignment from Pairagon GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG aaggataggataagtagccatatgtcctcctgactacttttctcccccagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTAgtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat Alignment from Exonerate_protein2genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG aaggataggataagtagccatatgtcctcctgactacttttctcccccagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTAgtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat Alignment from Exonerate_coding2genome GGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG aaggataggataagtagccatatgtcctcctgactacttttctcccccagGGAGCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTAgtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat Alignment from GeneWise CTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTCG aaggataggataagtagccatatgtcctcctgactacttttctcccccagggagCTCTAGCGGCAACTCCTCCCCTGAGTACCCACGAAAGGAACTTAgtaaacctcctccttaacttccagctgaaatgctttaatgatgtatgtat #### Cpeb3_ID7267_9 --> 2 - 0 Original Alignment ttGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagttGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt Alignment from CESAR ttGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagttGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt Alignment from Spaln_aa2Genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagTTGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt Alignment from Spaln_nt2Genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagTTGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt Alignment from Pairagon TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagTTGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt Alignment from Exonerate_protein2genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagTTGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt Alignment from Exonerate_coding2genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagTTGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt Alignment from GeneWise TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagttcccctttttgtgggtaaactcgacctccttcccctgctcttagTTGAACTTGCAATGATAATGGACCGTTTGTATGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttctcgaggagtatctttgtggcgttctctgtatt #### Cpeb3_ID7277_4 --> 2 - 1 Original Alignment ccAGGAGCTATGGGCGGAGACGAg tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagccAGGAGCTATGGGCGGAGACAAggtgagggtttcttataatgagattttcctgtctctttattatgattacag Alignment from CESAR ccAGGAGCTATGGGCGGAGACGAg tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagccAGGAGCTATGGGCGGAGACAAggtgagggtttcttataatgagattttcctgtctctttattatgattacag Alignment from Spaln_aa2Genome CCAGGAGCTATGGGCGGAGACGAG tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagCCAGGAGCTATGGGCGGAGACAAGgtgagggtttcttataatgagattttcctgtctctttattatgattacag Alignment from Spaln_nt2Genome CCAGGAGCTATGGGCGGAGACGAG tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagCCAGGAGCTATGGGCGGAGACAAGgtgagggtttcttataatgagattttcctgtctctttattatgattacag Alignment from Pairagon CCAGGAGCTATGGGCGGAGACGAG tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagCCAGGAGCTATGGGCGGAGACAAGgtgagggtttcttataatgagattttcctgtctctttattatgattacag Alignment from Exonerate_protein2genome CCAGGAGCTATGGGCGGAGACGAG tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagCCAGGAGCTATGGGCGGAGACAAGgtgagggtttcttataatgagattttcctgtctctttattatgattacag Alignment from Exonerate_coding2genome tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagccaggagctatgggcggagacaaggtgagggtttcttataatgagattttcctgtctctttattatgattacag Alignment from GeneWise tcaacattttgatacaaatacccatggttgtgttctttttgtgctgacagccaggagctatgggcggagacaaggtgagggtttcttataatgagattttcctgtctctttattatgattacag #### Cpn1_ID8872_8 --> 2 - 0 Original Alignment gtGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccaggtGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg Alignment from CESAR gtGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccaggtGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg Alignment from Spaln_aa2Genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccagGTGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg Alignment from Spaln_nt2Genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccagGTGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg Alignment from Pairagon GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccagGTGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg Alignment from Exonerate_protein2genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccagGTGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg Alignment from Exonerate_coding2genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccagGTGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg Alignment from GeneWise GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG acaatctttatgtttctttgctcactggcacactcactgtctgcttccagGTGAACAAGGGGATTATTTCCGGCTGCTGCTCCCGGGTACCTACTCTGTTACTGCCAAGGCACCTGGGTATGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTGgtaggccccaatctgactgttgtgctttatcttaaatggcccattgctgg #### Cpt1a_ID31_3 --> 1 - 0 Original Alignment tGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagtGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc Alignment from CESAR tGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagtGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc Alignment from Spaln_aa2Genome TGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagTGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc Alignment from Spaln_nt2Genome TGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagTGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc Alignment from Pairagon TGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagTGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc Alignment from Exonerate_protein2genome TGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagTGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc Alignment from Exonerate_coding2genome TGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagTGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc Alignment from GeneWise TGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGCGATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCACGGCAAAATGAGCCGCAGCACCAGAATCTGGATG cttctgtggccaggtcactcctgtcctctattctgatgatatcattttagTGGCCGCATGTCAAGCCAGACGAAAAACATTGTGAGTGGTGTGCTATTTGGCACAGGACTCTGGGTGGCCATCATCATGACTATGCGCTACTCACTGAAGGCACTGCTCACCTACCATGGCTGGATGTTTGCAGAGCATGGCAAAATGAGCCGCAGCACCATAATCTGGATGgtaagaacccatcacccagcataggacgcactcttttgctgtgcagaagc #### Cpt1a_ID34_6 --> 0 - 0 Original Alignment GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag Alignment from CESAR GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag Alignment from Spaln_aa2Genome GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag Alignment from Spaln_nt2Genome GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag Alignment from Pairagon GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag Alignment from Exonerate_protein2genome GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag Alignment from Exonerate_coding2genome GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag Alignment from GeneWise GTGAGTGACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCATG cacctgggcatgactgttcagtgtgctgttttattttcttacatttttagGTGAGTGACTGGTGGGAGGAATACATCTACCTGCAGGGGCGAGGGCCGATCATGGTTAACAGCAACTACTACACCATGgtaaaaattacaccactggcttcatgttgtttaaccacaacaggcttaag #### Cpt1a_ID36_8 --> 0 - 1 Original Alignment ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAg ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGggtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca Alignment from CESAR ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAg ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGggtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca Alignment from Spaln_aa2Genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGGgtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca Alignment from Spaln_nt2Genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGGgtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca Alignment from Pairagon ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGGgtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca Alignment from Exonerate_protein2genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGGgtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca Alignment from Exonerate_coding2genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGGgtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca Alignment from GeneWise ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ttggggatttttgattttgcccattggtccttcctttctgtctctcacagATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTATCCAATACTTCCCGCATCCCGGGGGAGGAGACGGgtgagtattgcttgttgggatttctgctgggacccagccagcatctgtca #### Cpt1a_ID38_10 --> 1 - 2 Original Alignment aGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACag acctcccaacctatacaactgttcttagcattgccttttctccattttagaGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACaggtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt Alignment from CESAR aGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACag acctcccaacctatacaactgttcttagcattgccttttctccattttagaGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACaggtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt Alignment from Spaln_aa2Genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagcattgccttttctccattttagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACAGgtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt Alignment from Spaln_nt2Genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagcattgccttttctccattttagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACAGgtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt Alignment from Pairagon AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagcattgccttttctccattttagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACAGgtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt Alignment from Exonerate_protein2genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagcattgccttttctccattttagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACAGgtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt Alignment from Exonerate_coding2genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagcattgccttttctccattttagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACAGgtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt Alignment from GeneWise AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagcattgccttttctccattttagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAACAATCTCTGGATGCAGTAGAAAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACAGACAGCTATGCCAAATCTTTACTGCACGGAAGATGTTTCGACAGgtgggtcccatttttaatctctggggttgatggggggttgcaggagatgt #### Cpt1a_ID41_13 --> 0 - 0 Original Alignment TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag Alignment from CESAR TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag Alignment from Spaln_aa2Genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag Alignment from Spaln_nt2Genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag Alignment from Pairagon TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag Alignment from Exonerate_protein2genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag Alignment from Exonerate_coding2genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag Alignment from GeneWise TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ctgaaaggctgtgcttccccactaagcacattgtctccgcctttcctcagTGCCAGGAAGTCATAGAAACGTCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCCTTTTGACACCTTTGGCAAAGGCTTGATCAAAAAATGCCGGACAAGTCCCGATGCCTTCATCCAGCTGGCACTGCAACTTGCACATTACAAGgtgtgtggggcactccctgttgaaaaaatgaaccgagtaacatgaactag #### Crtac1_ID8463_9 --> 1 - 1 Original Alignment tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagtGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAggtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag Alignment from CESAR tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagtGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAggtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag Alignment from Spaln_aa2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagTGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAGgtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag Alignment from Spaln_nt2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagTGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAGgtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag Alignment from Pairagon TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagTGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAGgtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag Alignment from Exonerate_protein2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagTGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAGgtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag Alignment from Exonerate_coding2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagTGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAGgtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag Alignment from GeneWise TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG gaccaggggcttgaagtgtccatgttggagatctatcatttctattccagTGTCATCCGCAGGGAGCATGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTAAAGgtaagtcacctgaaggctgtaggacctgtcctcatctcagaagttggtag #### Crtac1_ID8466_8 --> 0 - 2 Original Alignment GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCcg tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTcggtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag Alignment from CESAR GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCcg tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTcggtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag Alignment from Spaln_aa2Genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTCGgtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag Alignment from Spaln_nt2Genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTCGgtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag Alignment from Pairagon GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTCGgtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag Alignment from Exonerate_protein2genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTCGgtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag Alignment from Exonerate_coding2genome GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTCGgtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag Alignment from GeneWise GACATTGCTTCGCCCAAGTTCTCCACGCCCTCCCCTGTCCGGACTGTCATTGCTGCCGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGAAGCTCCTCAGCCAATCGCCTCTTCCG tgctctttgttaccctccggtttctgactatcctgtgtatatgtttgcagGACATTGCTTCACCCAAGTTCTCCACACCCTCCCCTGTCCGGACTGTCATTGCTGCTGACTTTGACAATGACCAGGAACTGGAAGTCTTCTTCAACAACATTGCCTACAGGAGCTCATCAGCCAATCATCCCTTTCGgtatgtaacccacaccattgacagatggacggcagatgataaagtcgaag #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag atatgaacacactacttccagtcccctaatccacctcttcatctccgcagatGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGaggtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag atatgaacacactacttccagtcccctaatccacctcttcatctccgcagatGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGaggtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg cttctatgacatcatcactgacactctgctctttgcatcttttcccttagaGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCggtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg cttctatgacatcatcactgacactctgctctttgcatcttttcccttagaGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCggtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG cttctatgacatcatcactgacactctgctctttgcatcttttcccttagAGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG cttctatgacatcatcactgacactctgctctttgcatcttttcccttagAGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG cttctatgacatcatcactgacactctgctctttgcatcttttcccttagAGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG cttctatgacatcatcactgacactctgctctttgcatcttttcccttagAGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga Alignment from Exonerate_coding2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG cttctatgacatcatcactgacactctgctctttgcatcttttcccttagAGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG cttctatgacatcatcactgacactctgctctttgcatcttttcccttagAGGTCACGATGTGGCACGTTGCATGGCTGACCCTGGGGACGATGTCATCACACAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTTGTAACTGGTCGGAGTGGGGCAGGGCCAGTGCGGTTTCTGGATGATGTGGTGGCTACAAAGGCACTCGgtaagtttgcatttatgagtaggtgtgggacttctaattggcaacctgga #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacaggcACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacaggcACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCacgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from Exonerate_coding2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC ggacaaggcgtggtaagttccagtcaagacggttgcccctttccccacagGCACAGCGGGCTCAGGGGCAGAGAACCTGATCTGCGAGATCCGAGCCTCTCGCTTCCTTTCCTGTGCCTGGCGAGAGGGGCCAGCAGCACCTGCAGATGTCCGGCACTCGCTGCGAGTCCTCAACTCCACgtgagtagtgatctcaggtcgggccttcatccatcatgggtgtggtttgc #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAggtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAggtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccactgcactattcccccaccctcactgagtctgtgctgtctacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGAAGCTGAGCTTCGTCAATGAAGgtgagtagggctgggggtgtttcagtgatgtcatcactaacaaataccag #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagctCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagctCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACC------GTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGgcgagtctcagtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGgcgagtctcagtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaggccacatgcaaccaaggcactccctgaaatttaaatgaatagCTCCAACCACACCATATGCTGGTTCAGCCCTCAACCTGATCTTTGACCCCTGGACTCGGACACTGACATGGGCCTGCGACACCGCTGCAGGGAATGTCATGGTGATGTCGTGCACTGTGACTGTGACCTCACGGGAGGCATCAATACACCGGCGAGTCTCAgtagtggggggtaggatgagagggccatgtcccataatgatgtcacttcc #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagagTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagagTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagAGTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagAGTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagAGTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagAGTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagAGTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatactggttctctcccgatgcctccagAGTTTAGAAATGCAACCTTCAGCTCGTTCCTACCATTGTTGGACAAAGATCCCCTGCCCCAGgtaagaatgctgtgttgaggagagacaaaggctccttaattctctttccc #### Ctsf_ID678_6 --> 2 - 1 Original Alignment aaGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAg cgttatgatctggttgggttcaagaccctctttttatttactctttctagaaGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTggtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag Alignment from CESAR aaGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAg cgttatgatctggttgggttcaagaccctctttttatttactctttctagaaGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTggtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag Alignment from Spaln_aa2Genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cgttatgatctggttgggttcaagaccctctttttatttactctttctagAAGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTGgtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag Alignment from Spaln_nt2Genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cgttatgatctggttgggttcaagaccctctttttatttactctttctagAAGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTGgtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag Alignment from Pairagon AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cgttatgatctggttgggttcaagaccctctttttatttactctttctagAAGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTGgtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag Alignment from Exonerate_protein2genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cgttatgatctggttgggttcaagaccctctttttatttactctttctagAAGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTGgtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag Alignment from Exonerate_coding2genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cgttatgatctggttgggttcaagaccctctttttatttactctttctagAAGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTGgtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag Alignment from GeneWise AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cgttatgatctggttgggttcaagaccctctttttatttactctttctagAAGCCCAGTGGCGGTTGACTGTTTTTGCAAGAAATATGATACGAGCACAGATGATTCAGGCCCTGGACCGTGGCACAGCTCAGTATGGCATCACAAAGTTCAGTGGCCTCACTGgtgagaacagcaaccaaagctgacacagagcttgtgactggtatggacag #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_aa2Genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_protein2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from Exonerate_coding2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtatcttgttatttggaaaacagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtcagtgtcctgatccatccccctttcttcagaccaaccccttcagaggg #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagagATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagagATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from GeneWise AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGggtgtgtggggttggacatgtgtcaagccatggaacctgctcaccttaccc Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGggtgtgtggggttggacatgtgtcaagccatggaacctgctcacctaatcc Alignment from Spaln_aa2Genome GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcaccttaccc Alignment from Spaln_nt2Genome GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcaccttaccc Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcaccttaccc Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagagaagttgcaaccatttccccggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcaccttaccc Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagagaagttgcaaccatttccccggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcaccttaccc Alignment from GeneWise GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG ccagtttgggctaatccaacccagggtagtccatattttgttcactacagAGAAGTTGCAACCATTTCCCCGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATCAAACACCAGCAGTTTGTGGATGTCTCTGTCCAGGgtgtgtggggttggacatgtgtcaagccatggaacctgctcaccttaccc #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagagTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCggtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagagTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCggtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ggccacttcctgcctcgagactgacctattttatgtccttttcttctcagAGTACACTCGCCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACCCCATTCAGTGACCTCACCGgtaagaaagtgggtgattggcagatgtgcaagggaaatttcccaccggat #### Cutc_ID8810_5 --> 2 - 1 Original Alignment ctCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAg atttggtaattagcccctttgagttgttgttattttctctcacacgtcagctCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAggtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt Alignment from CESAR ctCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAg atttggtaattagcccctttgagttgttgttattttctctcacacgtcagctCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAggtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt Alignment from Spaln_aa2Genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG atttggtaattagcccctttgagttgttgttattttctctcacacgtcagCTCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAGgtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt Alignment from Spaln_nt2Genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG atttggtaattagcccctttgagttgttgttattttctctcacacgtcagCTCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAGgtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt Alignment from Pairagon CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG atttggtaattagcccctttgagttgttgttattttctctcacacgtcagCTCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAGgtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt Alignment from Exonerate_protein2genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG atttggtaattagcccctttgagttgttgttattttctctcacacgtcagCTCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAGgtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt Alignment from Exonerate_coding2genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG atttggtaattagcccctttgagttgttgttattttctctcacacgtcagCTCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAGgtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt Alignment from GeneWise CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG atttggtaattagcccctttgagttgttgttattttctctcacacgtcagCTCTTTGCCGCCCTCTTTTGGTCACATTCCACAGAGgtgagttacttcatgatgtctcagtgatcttagttagtatcatagttctt #### Cutc_ID8812_7 --> 0 - 1 Original Alignment GCAAAAGGCAGGATTGTGGTAATGCCAg taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAggtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt Alignment from CESAR GCAAAAGGCAGGATTGTGGTAATGCCAg taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAggtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt Alignment from Spaln_aa2Genome GCAAAAGGCAGGATTGTGGTAATGCCAG taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAGgtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt Alignment from Spaln_nt2Genome GCAAAAGGCAGGATTGTGGTAATGCCAG taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAGgtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt Alignment from Pairagon GCAAAAGGCAGGATTGTGGTAATGCCAG taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAGgtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt Alignment from Exonerate_protein2genome GCAAAAGGCAGGATTGTGGTAATGCCAG taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAGgtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt Alignment from Exonerate_coding2genome GCAAAAGGCAGGATTGTGGTAATGCCAG taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAGgtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt Alignment from GeneWise GCAAAAGGCAGGATTGTGGTAATGCCAG taccaatctttgttcaatgactaatatggtaatatactcttgggtttcagGCAAAAGGGAGGATTGTGGTCATGCCAGgtatgacccatgaatgaccctgaaatggagttttgtaaaagtaaacaagt #### Cwf19l1_ID8940_4 --> 2 - 1 Original Alignment ctCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGg tgttcagagcagatccggacccatatggagagtcacccttccctttccagctCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGggtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat Alignment from CESAR ctCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGg tgttcagagcagatccggacccatatggagagtcacccttccctttccagctCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGggtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat Alignment from Spaln_aa2Genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccggacccatatggagagtcacccttccctttccagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGGgtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat Alignment from Spaln_nt2Genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccggacccatatggagagtcacccttccctttccagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGGgtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat Alignment from Pairagon CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccggacccatatggagagtcacccttccctttccagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGGgtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat Alignment from Exonerate_protein2genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccggacccatatggagagtcacccttccctttccagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGGgtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat Alignment from Exonerate_coding2genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccggacccatatggagagtcacccttccctttccagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGGgtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat Alignment from GeneWise CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG tgttcagagcagatccggacccatatggagagtcacccttccctttccagCTCCTATTCAGACATATGTGTTTGGTGCCAATAATGAGGAGACAGCAAATTATTTCCAGGGTGCTGATGGCTGTGAATTAGCTGAAAATATCACCTACCTGGgtaagtcaagaaaaattattttgtaatgaattgcgtacaaagaaaaaaat #### Cwf19l1_ID8942_2 --> 1 - 0 Original Alignment cTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT aatccatatacgtttccttaaatgacatctataatttgcttaacttctagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag Alignment from CESAR cTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT aatccatatacgtttccttaaatgacatctataatttgcttaacttctagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag Alignment from Spaln_aa2Genome CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT aatccatatacgtttccttaaatgacatctataatttgcttaacttctagCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag Alignment from Spaln_nt2Genome CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT aatccatatacgtttccttaaatgacatctataatttgcttaacttctagCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag Alignment from Pairagon CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT aatccatatacgtttccttaaatgacatctataatttgcttaacttctagCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag Alignment from Exonerate_protein2genome TTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT aatccatatacgtttccttaaatgacatctataatttgcttaacttctagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag Alignment from Exonerate_coding2genome TTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT aatccatatacgtttccttaaatgacatctataatttgcttaacttctagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag Alignment from GeneWise GCTCAGAAGCCACTGCGTCTCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT tttccttaaatgacatctataatttgctta------------ACTTCTAGCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagctgatcatttttactcaaattttgcactgtagtcaaacattaaag #### Cyb561a3_ID2892_4 --> 1 - 0 Original Alignment gAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacaggAAAAATGCCACCAAGCCC---------------------------------TACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAGgtaagtcaccggtctctctttccaggcagggtgttggcacatgttagaaa Alignment from CESAR gAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacaggAAAAATGCCACCAAGCCCTAC---------------------------------AGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAGgtaagtcaccggtctctctttccaggcagggtgttggcacatgttagaaa Alignment from Spaln_aa2Genome GAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacagGAAAAATGCCACCAAGCCCTAC---------------------------------AGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAGgtaagtcaccggtctctctttccaggcagggtgttggcacatgttagaaa Alignment from Spaln_nt2Genome GCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacaggaaaaatgccaccaagCCCTACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAGgtaagtcaccggtctctctttccaggcagggtgttggcacatgttagaaa Alignment from Pairagon GAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacagGAAAAATGCCACCAAGCCCT---------------------------------ACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAGgtaagtcaccggtctctctttccaggcagggtgttggcacatgttagaaa Alignment from Exonerate_protein2genome TGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacagGAAAAATGCCACCAAGCCCTACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAGgtaagtcaccggtctctctttccaggcagggtgttggcacatgttagaaa Alignment from Exonerate_coding2genome TGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacagGAAAAATGCCACCAAGCCCTACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAGgtaagtcaccggtctctctttccaggcagggtgttggcacatgttagaaa Alignment from GeneWise GAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAGCCCCTGTTGCATGACAGGGAA agaaaggaaagaaaatctgacaaataccccctgccgccctgtatccacagGAAAAATGCCACCAAGCCCTACAGC---------------------------------ACAGGGCTCTTGGTGGTGGCTTTTGGCTTACTAGTTCTCTATGTACTTCTGGCTTCATCATGGAAGCGTCCAGACCCAGGAGCTCTAACTGATAGACAG------GTAAGTCACCGGTCTctctttccaggcagggtgttggcacatgt #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTT------AGGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTT------AGGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAGGTGAAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTAGGC------ATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGGCATGTgtctctccaactctggtcttgtctactagccaaccactatgggg #### Cyp26a1_ID7417_5 --> 0 - 0 Original Alignment GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct Alignment from CESAR GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct Alignment from Spaln_aa2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct Alignment from Spaln_nt2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct Alignment from Pairagon GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct Alignment from Exonerate_protein2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct Alignment from Exonerate_coding2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct Alignment from GeneWise GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tgcatatgcaacgcacttagatctgtaaaattttgttattcttaatacagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACATGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtaagtgaggttttttattcctaggacattcctccacccccaccagtcct #### Cyp26c1_ID7406_3 --> 0 - 0 Original Alignment GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt Alignment from CESAR GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt Alignment from Spaln_aa2Genome GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt Alignment from Spaln_nt2Genome GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt Alignment from Pairagon GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt Alignment from Exonerate_protein2genome GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt Alignment from Exonerate_coding2genome GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt Alignment from GeneWise GTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGGCGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGCACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGCGCAAG cttgttggtgtggtttcatccccctgtgaaggctctgtctcctcactcagGTGTTGGCGCATGTATTCAGCCGATCCTCTCTGGAGCAATTTGTGCCACGGTTGCAGGGGGCACTGCGGCGAGAGGTGCGCTCTTGGTGTGCCGCCCAACGACCAGTGGCTGTTTACCAAGCAGCCAAAGCACTCGCCTTCCGCATGGCTGCCCGTATCCTACTGGGTCTGCAACTGGACGAAGCACGATGCACCAAGCTGGCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCATTACCCTTAGATGTACCACTCAGTGGCCTGCGCAAAgtgagtctgcctcacacctgagtcccaggcccagagagtccagataatgt #### Cyp26c1_ID7407_4 --> 0 - 0 Original Alignment GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga Alignment from CESAR GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga Alignment from Spaln_aa2Genome GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga Alignment from Spaln_nt2Genome GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga Alignment from Pairagon GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga Alignment from Exonerate_protein2genome GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga Alignment from Exonerate_coding2genome GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga Alignment from GeneWise GGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGAGAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAGCCCTCAGTGCAAGAGCTGAAG ctgcctctccagcattcctacaacaaccacatgttacggtttctttgcagGGCATCTGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCTGTCGCTGAGAAGCTTCAGGAAAAACAGACAGCAGACCCAGGTGATGCCCTGCTCTTTATTATTAACGGTGCGAGGGAGCTGGGCCATGAACCCTCAGTGCAAGAGCTGAAGgtgaggtattcagaggctgccccttcctccccctaggctctttcctcaga #### Cyp2c29_ID7761_4 --> 2 - 0 Original Alignment gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacaggc---TCCTGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata Alignment from CESAR gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacaggcTCC---TGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata Alignment from Spaln_aa2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacagGCTCC---TGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata Alignment from Spaln_nt2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacagGCT---CCTGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata Alignment from Pairagon GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacagGCT---CCTGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata Alignment from Exonerate_protein2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacagGCTCC---TGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata Alignment from Exonerate_coding2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacagGCTCC---TGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata Alignment from GeneWise GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccattttaatggcatattcccacttctccccttgtgttcacagGCTCC---TGTGACCCTACCTTTATCCCGAGCTGTGCTCCATGCAATGTCATCTGCTCTATTATTTTCCAGAACCGTTTTGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtatgttcatcttccttttgcggaaaggtatgatgctttattgtcacata #### Cyp2c38_ID7776_4 --> 2 - 0 Original Alignment gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtaggcTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt Alignment from CESAR gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtaggcTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt Alignment from Spaln_aa2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtagGCTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt Alignment from Spaln_nt2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtagGCTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt Alignment from Pairagon GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtagGCTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt Alignment from Exonerate_protein2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtagGCTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt Alignment from Exonerate_coding2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtagGCTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt Alignment from GeneWise GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctttgcctagctttacactatgttctccatcttttttttcatattgtagGCTCACCTTGCGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATCTTTCAAGATCGTTTTGATTACAAGGACAAAGATTTTCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAGgtgagttcaagaatgtttttcctccttgagaacacttctggtgccatatt #### Cyp2c39_ID7789_8 --> 0 - 1 Original Alignment GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCAT---GGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAggtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg Alignment from CESAR GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCAT---GGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAggtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg Alignment from Spaln_aa2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCAT---GGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAGgtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg Alignment from Spaln_nt2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCATG---GCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAGgtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg Alignment from Pairagon GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCATG---GCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAGgtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg Alignment from Exonerate_protein2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCAT---GGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAGgtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg Alignment from Exonerate_coding2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCAT---GGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAGgtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg Alignment from GeneWise GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG catttggaggctgttttttggtaacctggacatggcttttattgtcctagGGAACAACAGTAGTAACATCATTGACATCAGTTCTGCAT---GGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAGAGTGACAAATTCATGCCCTTTTCAGCAGgtaagcgaaagccattctcagggctctggtgacataaggtctatggagtg #### Cyp2c40_ID7817_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagctAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagctAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagCTAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagCTAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagCTAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagCTAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagCTAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tatgggctataattctcacattccaatataataatgccttttcttctcagCTAAAGTCCAGGAAGAGATTGATAATGTGATTGGGAGACACCGCAGTCCCTGTATGCAGGACAGGAACCATATGCCTTACACGAATGCCATGGTGCATGAGGTTCAGCGATACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACCAAGTTCAGAAACTACCTCATCCCCAAGgtagagatgcttctccctgttacacataagtatgatggggaggacaggaa #### Cyp2c40_ID7818_6 --> 0 - 1 Original Alignment AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAggtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa Alignment from CESAR AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAggtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa Alignment from Spaln_aa2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAGgtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa Alignment from Spaln_nt2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAGgtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa Alignment from Pairagon AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAGgtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa Alignment from Exonerate_protein2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAGgtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa Alignment from Exonerate_coding2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAGgtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa Alignment from GeneWise AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tgattgtgcaaagacaatttttctcagatttgttattcttccttgaatagAAAAATGGTATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTGGTGACTGATTTAGTTTTTGGCGGGACAGAGACATTAAGCTCAACAATGAGATTTGCCCTCGTGCTCTTGATGAAGCACACGCACATCACAGgtgagtattcaattaatgaggcacagcattcctaaaagttacacatacaa #### Cyp2c44_ID8889_2 --> 0 - 1 Original Alignment CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATg taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATggtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa Alignment from CESAR CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATg taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATggtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa Alignment from Spaln_aa2Genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATGgtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa Alignment from Spaln_nt2Genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATGgtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa Alignment from Pairagon CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATGgtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa Alignment from Exonerate_protein2genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATGgtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa Alignment from Exonerate_coding2genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATGgtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa Alignment from GeneWise CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG taaagagatttcataacatcatttgcaccgtcctccctgccttgctccagCTGGCCAAAGAGTATGGGCCTGTTTACACCTTGTACTTTGGATCCTGGCCTACTGTGGTCCTACATGGCTATGACGTGGTGAAGGAAGTGCTACTCAATCAGGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATAATTGAAGACAGCCAGAAGGGACATGgtacaattcaagccagaatgctggcaaactttgttgggattccagtgcaa #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGggtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGggtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGggtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGggtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGGgtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGGgtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGGgtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGGgtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGGgtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgagaagcaggtgtacttacctaatattctctgcctgtgcttgtgcccagTTATCAAGAGTTTATGGTCCAGTGTACACTTCATATTTAGGCAGGAAGCCAACTGTGGTATTGCATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTCTTTGCTGGACGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAACGGAATGGgtacgtatccatgtactgtatagtgtgtattgtaaaaggacagtggtagc #### Cyp2c55_ID7725_2 --> 0 - 1 Original Alignment TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGg ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTggtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca Alignment from CESAR TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGg ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTggtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca Alignment from Spaln_aa2Genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTGgtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca Alignment from Spaln_nt2Genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTGgtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca Alignment from Pairagon TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTGgtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca Alignment from Exonerate_protein2genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTGgtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca Alignment from Exonerate_coding2genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTGgtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca Alignment from GeneWise TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttagcctagaatcttcttatggtttccttcctaaaccttttggcacaaagTTATCAAAAGTCTATGGACCAGTGTTCACTTTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGAAGTTTTCAAATTTTTGAAAGAATTAATAATGATCTTGgtgcgagtgcatgtatgcaaatgcaggtttatgcatgcttaggctgagca #### Cyp2c65_ID7737_3 --> 2 - 1 Original Alignment ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg aacctttacttacctaggaagtccctacctttgtgtacttgactccacagggGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAggtaaggattgcacaccttatacttctctcatcttatgagatcctccagac Alignment from CESAR ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg aacctttacttacctaggaagtccctacctttgtgtacttgactccacagggGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAggtaaggattgcacaccttatacttctctcatcttatgagatcctccagac Alignment from Spaln_aa2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacttacctaggaagtccctacctttgtgtacttgactccacagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaaggattgcacaccttatacttctctcatcttatgagatcctccagac Alignment from Spaln_nt2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacttacctaggaagtccctacctttgtgtacttgactccacagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaaggattgcacaccttatacttctctcatcttatgagatcctccagac Alignment from Pairagon GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacttacctaggaagtccctacctttgtgtacttgactccacagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaaggattgcacaccttatacttctctcatcttatgagatcctccagac Alignment from Exonerate_protein2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacttacctaggaagtccctacctttgtgtacttgactccacagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaaggattgcacaccttatacttctctcatcttatgagatcctccagac Alignment from Exonerate_coding2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacttacctaggaagtccctacctttgtgtacttgactccacagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaaggattgcacaccttatacttctctcatcttatgagatcctccagac Alignment from GeneWise GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacttacctaggaagtccctacctttgtgtacttgactccacagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaaggattgcacaccttatacttctctcatcttatgagatcctccagac #### Cyp2c65_ID7739_5 --> 0 - 0 Original Alignment ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg Alignment from CESAR ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg Alignment from Spaln_aa2Genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg Alignment from Spaln_nt2Genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTA---ATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg Alignment from Pairagon ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTA---ATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg Alignment from Exonerate_protein2genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg Alignment from Exonerate_coding2genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg Alignment from GeneWise ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgaatgtgtgttcttaatggaagcactgtcttctttcagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaagttattattgaaacttaaggtagttatttgactgcttgagcagttg #### Cyp2c65_ID7740_6 --> 0 - 1 Original Alignment GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCTCTG---------CTCAAATATCCAGAAGTAACAagtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac Alignment from CESAR GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCT---------CTGCTCAAATATCCAGAAGTAACAagtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac Alignment from Spaln_aa2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCT---------CTGCTCAAATATCCAGAAGTAACAAgtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac Alignment from Spaln_nt2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCT---------CTGCTCAAATATCCAGAAGTAACAAgtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac Alignment from Pairagon GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCT---------CTGCTCAAATATCCAGAAGTAACAAgtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac Alignment from Exonerate_protein2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCT---------CTGCTCAAATATCCAGAAGTAACAAgtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac Alignment from Exonerate_coding2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCT---------CTGCTCAAATATCCAGAAGTAACAAgtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac Alignment from GeneWise GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG aattacgttgatgaatacatagttggatattaacctttttctcttttcagGAAAAGCACAACCCCAAGACGGAGTTTAGTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAAACAACAAGTACAACCCTGAGGTACTCTCTGCTC---------AAATATCCAGAAGTAACAAgtgagaactcagtttggcaacaaatgggtttcagaaagaaatgagaagac #### Cyp2c66_ID7747_2 --> 0 - 1 Original Alignment TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTggtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga Alignment from CESAR TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTggtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga Alignment from Spaln_aa2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga Alignment from Spaln_nt2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga Alignment from Pairagon TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga Alignment from Exonerate_protein2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga Alignment from Exonerate_coding2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga Alignment from GeneWise TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacatcttaatttgtttgtttgtgggctgagccggcgccccgcagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtcttaatccctaccaatatgtccacatgcctgtacctaagtgtccatga #### Cyp2c66_ID7753_8 --> 0 - 1 Original Alignment GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAggtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc Alignment from CESAR GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAggtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc Alignment from Spaln_aa2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc Alignment from Spaln_nt2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTT---TCCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc Alignment from Pairagon GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTT---TCCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc Alignment from Exonerate_protein2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc Alignment from Exonerate_coding2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc Alignment from GeneWise GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG ccttttacttttcaatcctgtatattattttccttctctgtcctctctagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTCGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtaagtaaaattgtttcctggtcttttcaatctaacaatattgccacccc #### Cyp2c68_ID7806_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagccAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagccAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagCCAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagCCAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagCCAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagCCAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagCCAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aggtacaggcaaatttttcccatatttgacttctttcttcttgatttcagCCAAAGTCCAGGAAGAGATTGATAATGTAATTGGAAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTCCAGCGATACATTGAGCTTGGCCCAAATGGTGTGGTGCATGAAGTGACCTGTGATACAAAGTTCAGAAACTACTTCATCCCCAAGgtaagtttgttttaccctgtctctgttatttctgttccttgttaatattt #### Cyp2c68_ID7807_6 --> 0 - 1 Original Alignment AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTACTTTTGATGAAGCACACACACATCACAggtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc Alignment from CESAR AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTACTTTTGATGAAGCACACACACATCACAggtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc Alignment from Spaln_aa2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTACTTTTGATGAAGCACACACACATCACAGgtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc Alignment from Spaln_nt2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTA------TTGCTCTCCTACTTTTGATGAAGCACACACACATCACAGgtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc Alignment from Pairagon AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTA------TTGCTCTCCTACTTTTGATGAAGCACACACACATCACAGgtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc Alignment from Exonerate_protein2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTACTTTTGATGAAGCACACACACATCACAGgtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc Alignment from Exonerate_coding2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTACTTTTGATGAAGCACACACACATCACAGgtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc Alignment from GeneWise AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTGTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gattctgcaatgacaataactctcagattgtctatctgtctgtcttgcagAAAAATGGCATTGAGCACATGGACTATTCCATTGAGCACCTGGCAACATTGGTGACTGATCTCGTGTTTGGTGGGACAGAGACCTTAAGCTCAACTATT------GCTCTCCTACTTTTGATGAAGCACACACACATCACAGgtctgaatacagacgttaaagcacagcattcctaaaagttgctaggagtc #### Cyp2c68_ID7811_2 --> 0 - 1 Original Alignment TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGg aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGggtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca Alignment from CESAR TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGg aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGggtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca Alignment from Spaln_aa2Genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGGgtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca Alignment from Spaln_nt2Genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGGgtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca Alignment from Pairagon TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGGgtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca Alignment from Exonerate_protein2genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGGgtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca Alignment from Exonerate_coding2genome TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGGgtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca Alignment from GeneWise TTTTCTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGATATTACATGGTTATGAGGCAATGAAAGAAGCCTTCATTGACTATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAAGTTTCTAAAGGAAAGG aggcaacgactttgtttttactaatcttctctgtactcccttcctgccagTTTTTTAAAATATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACGGCCTATTGTGATCTTACACGGTTATGAGGCAATGAAAGAAGCTTTCATTGATTATGGAGAAGAATTCTCGGGAAGAGGAAGGATACCAGTCTTTGACAAAGTTTCTAAGGGAAAGGgtaggagtgtatttgtgtgtctatgtgaatactgggcagtttccagagca #### Cyp2c69_ID7828_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagctAAAGTCCAGGAAGAGATTGAT---GTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagctAAAGTCCAGGAAGAGATTGAT---GTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagCTAAAGTCCAGGAAGAGATTGAT---GTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagCTAAAGTCCAGGAAGAGATTG---ATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagCTAAAGTCCAGGAAGAGATTG---ATGTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagCTAAAGTCCAGGAAGAGATTGAT---GTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagCTAAAGTCCAGGAAGAGATTGAT---GTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG cctaagaatacaggctatatttttcccataatgtgtatgtttattttcagCTAAAGTCCAGGAAGAGATTGAT---GTGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGATATGCCCTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACGTTGGCCCAACTAGTTTGGTGCATGAACTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAGgtaagcctggttcccgacagatttctgtgttcttggtgttcccagatgca #### Cyp2c70_ID7878_2 --> 0 - 1 Original Alignment CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAggtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc Alignment from CESAR CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAggtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc Alignment from Spaln_aa2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAGgtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc Alignment from Spaln_nt2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAGgtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc Alignment from Pairagon CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAGgtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc Alignment from Exonerate_protein2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAGgtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc Alignment from Exonerate_coding2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAGgtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc Alignment from GeneWise CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tggcatgtgtgggaaattcgcctacactgcatcaaacccttgcctcacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAGTTCTCCGATAAAACAGATTCAACATTACTCAGTAGAACCAGCCAAGGCCTAGgtaagtctccttgttggggtgcatccagaccatgcaagtggcaatgaagc #### D19Bwg1357e_ID5836_16 --> 2 - 2 Original Alignment gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag cttgaggggatacacatctggcacctacacatttgttggatttccttcaggtTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCaggtacccagctgggtcatgtaacacacacagacacttattttctttttttc Alignment from CESAR gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag cttgaggggatacacatctggcacctacacatttgttggatttccttcaggtTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCaggtacccagctgggtcatgtaacacacacagacacttattttctttttttc Alignment from Spaln_aa2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG cttgaggggatacacatctggcacctacacatttgttggatttccttcagGTTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCAGgtacccagctgggtcatgtaacacacacagacacttattttctttttttc Alignment from Spaln_nt2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG cttgaggggatacacatctggcacctacacatttgttggatttccttcagGTTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCAGgtacccagctgggtcatgtaacacacacagacacttattttctttttttc Alignment from Pairagon GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG cttgaggggatacacatctggcacctacacatttgttggatttccttcagGTTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCAGgtacccagctgggtcatgtaacacacacagacacttattttctttttttc Alignment from Exonerate_protein2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG cttgaggggatacacatctggcacctacacatttgttggatttccttcagGTTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCAGgtacccagctgggtcatgtaacacacacagacacttattttctttttttc Alignment from Exonerate_coding2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG cttgaggggatacacatctggcacctacacatttgttggatttccttcagGTTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCAGgtacccagctgggtcatgtaacacacacagacacttattttctttttttc Alignment from GeneWise GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG cttgaggggatacacatctggcacctacacatttgttggatttccttcagGTTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCGAGGTGCCATTATTCTCTCCAGgtacccagctgggtcatgtaacacacacagacacttattttctttttttc #### D19Bwg1357e_ID5844_8 --> 0 - 2 Original Alignment TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaa gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAaagtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca Alignment from CESAR TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaa gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAaagtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca Alignment from Spaln_aa2Genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca Alignment from Spaln_nt2Genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca Alignment from Pairagon TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca Alignment from Exonerate_protein2genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca Alignment from Exonerate_coding2genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca Alignment from GeneWise TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA gccatagctatctttaaccacatttggttcctgtctcctcttccccacagTCTGCAGATCACCCCACGCTGGACAAGGTACTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtagagaagcacttttattaatagtttaaaggcagcatatgagggagcca #### D19Bwg1357e_ID5847_5 --> 0 - 1 Original Alignment ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAg taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAggtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc Alignment from CESAR ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAg taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAggtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc Alignment from Spaln_aa2Genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc Alignment from Spaln_nt2Genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc Alignment from Pairagon ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc Alignment from Exonerate_protein2genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc Alignment from Exonerate_coding2genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc Alignment from GeneWise ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG taatgttagaagtagtgtaaatggtaaggcttctgattcttcactcatagATTGCCTTTGCACATGACTCAACACGTGTGATCCAGTGCTTCATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtaacattaatagcatgtgtttatcacacaataaggtcacttgtgatctc #### D19Bwg1357e_ID5851_2 --> 2 - 1 Original Alignment agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg aaggcacggagtcagtgaattaacacatttaacccttgcttctccagcagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGggtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga Alignment from CESAR agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg aaggcacggagtcagtgaattaacacatttaacccttgcttctccagcagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGggtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga Alignment from Spaln_aa2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG aaggcacggagtcagtgaattaacacatttaacccttgcttctccagcagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGGgtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga Alignment from Spaln_nt2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG aaggcacggagtcagtgaattaacacatttaacccttgcttctccagcagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGGgtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga Alignment from Pairagon AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG aaggcacggagtcagtgaattaacacatttaacccttgcttctccagcagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGGgtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga Alignment from Exonerate_protein2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG aaggcacggagtcagtgaattaacacatttaacccttgcttctccagcagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGGgtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga Alignment from Exonerate_coding2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG aaggcacggagtcagtgaattaacacatttaacccttgcttctccagcagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGGgtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga Alignment from GeneWise GTGAGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG aaggcacggagtcagtgaattaacacatttaacccttgcttctccagCAGAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTTGAGAAAGGCGCAACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCGAAGGATAAATTTCATAAGGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTGCGGgtgagttcgctcagggcattgctgaacctgcctgaccaggacatgcatga #### D19Ertd737e_ID13188_5 --> 0 - 0 Original Alignment TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat Alignment from CESAR TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat Alignment from Spaln_aa2Genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat Alignment from Spaln_nt2Genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat Alignment from Pairagon TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat Alignment from Exonerate_protein2genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat Alignment from Exonerate_coding2genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat Alignment from GeneWise TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG caggttttatctgttgcaggaaaatttagtgccttccctttgacctgcagTCGGGCCTTGAGAAGAGGGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaggcagacttagtcctgctatctgtcacccacatactattcccccat #### Dagla_ID2761_9 --> 1 - 0 Original Alignment gTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacaggTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag Alignment from CESAR gTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacaggTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag Alignment from Spaln_aa2Genome GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacagGTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag Alignment from Spaln_nt2Genome GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacagGTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag Alignment from Pairagon GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacagGTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag Alignment from Exonerate_protein2genome GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacagGTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag Alignment from Exonerate_coding2genome GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacagGTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag Alignment from GeneWise GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG tctagatagggccagtcacactatcttgctttcccacctatctcccacagGTGCTGTCTCTGCCCTGCACGACCCCGCTTTGCCCCTGGGGTCACCATCGAGGAAGACAACTGTTGTGGCTGCAATGCAATCGCTATCCGCCGCCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCAgtttgtgatcaggatcagactggggcccaatgtcatccaggggccactag #### Dagla_ID2766_5 --> 1 - 0 Original Alignment gCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagaCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct Alignment from CESAR gCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagaCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct Alignment from Spaln_aa2Genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagACACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct Alignment from Spaln_nt2Genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagACACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct Alignment from Pairagon GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagACACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct Alignment from Exonerate_protein2genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagACACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct Alignment from Exonerate_coding2genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagACACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct Alignment from GeneWise GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA ctcctgatcccgtgccataatctgacactaagggtctcttccctttctagACACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAGGTGTTCCTCTGTTGCACCCGGACAAAGGACTCTCAATCAgtatgaacccatagttgcttgccttgagtgttttcccgggtgggtcttct #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG gagcctccctaagtgtcagggcttggctcctgtgtttcctcttcttacagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAGTCCTTACTAAAGCAGTCAAGgtgagcgcattcagctgtacaatcaagcagccactaagctcccatctctg #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg cattggcactcatattttcagctgcttgtgaacatgacttctttttgcaggtGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAggtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg cattggcactcatattttcagctgcttgtgaacatgacttctttttgcaggtGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAggtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc #### Dclre1a_ID12125_2 --> 2 - 1 Original Alignment aaTGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCg tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagaaTGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTTT---GCAGCTGTGCCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACATCC---TCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTggtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg Alignment from CESAR aaTGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCg tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagaaTGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTTT---GCAGCTGTGCCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACATCC---TCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTggtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg Alignment from Spaln_aa2Genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagAATGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTTT---GCAGCTGTGCCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACATCC---TCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg Alignment from Spaln_nt2Genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagAATGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTT---TGCAGCTGTGCCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACAT---CCTCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg Alignment from Pairagon AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagAATGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTT---TGCAGCTGTGCCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACAT---CCTCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg Alignment from Exonerate_protein2genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagAATGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTTT---GCAGCTGTGCCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACATCC---TCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg Alignment from Exonerate_coding2genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagAATGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTTT---GCAGCTGTGCCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACATCC---TCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg Alignment from GeneWise AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG tagagtgcttttcagattctctttctactgtccctcttcctgcatcccagAATGTCCCGAGGGTTTGTTATGTACTTCCACAATTGCTTCCCATTATAAGAAATACACCCACATCCTGCTTGCTCAAAGTCGAGATAGCAAGGAACCCCTTGGTAGCCCCTCAGATGCATTGGCTGGGCTGTTTGCAGCTGTG---CCAGGCTCTCCTTGTAACCTTGAAGAAAGACGCTCTATGGCTCTTAAAACTGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCACAAACGTTGCCTGTTCCACAGTGTGCAGAGTTTGTCAAGAGAGACCAACTGGTGGGGGGTGGATCACCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCTGGGAGTATGGGATTGCCATTGCCAGAAAATGACACTGACAGCTGCGAGATTTCCTATTCTCCACTGCACAGTGATGAAGAAACTTATGACATAGACGAAGAGCTGGATGATTCACAGCAGGAGCTATTTTTTACCCAGGGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAATCTTCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCACGGCAAAGAGCCTGGTTGCCCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACTAGTAAGGCCAAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCAGCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGTAATCAGACTTCTTTGCCATTACTCACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTGAGACCCGAGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCCAGCATGCCTCTTGACAAGCCCTTGGGCACATCC---TCTGGCCCCAAGTGCAGCCCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATAGGCGTGTTCTTTGGACTACCACCCAAAAGACAAGAGACTTCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCAGTG---AGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAAAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAAAATTTAAATGAGAGTCAGCACTCTGTAGGACTGTGTGGAGAGAAGCGGCAACATCGAAGGAAGAGACATAAAACATCAAATTCACCACGGAAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCGTGGCAGGACACAAAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtaagatggaataccaacttcaccttatcaatgacaaccctgcagtagcg #### Ddb1_ID2920_5 --> 0 - 1 Original Alignment GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAggtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct Alignment from CESAR GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAggtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct Alignment from Spaln_aa2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAGgtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct Alignment from Spaln_nt2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAGgtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct Alignment from Pairagon GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAGgtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct Alignment from Exonerate_protein2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAGgtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct Alignment from Exonerate_coding2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAGgtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct Alignment from GeneWise GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgtttcctggtctccctttctagGATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCATCAATGGTGATGGCAGgtaagtgggtttgatgggagatccctgtaggatctggttctcccccctct #### Ddb1_ID2923_8 --> 0 - 0 Original Alignment ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt Alignment from CESAR ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt Alignment from Spaln_aa2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt Alignment from Spaln_nt2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt Alignment from Pairagon ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt Alignment from Exonerate_protein2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt Alignment from Exonerate_coding2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt Alignment from GeneWise ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG tatgactaagggttgatcctaattcccttctttttaaaaattcttcttagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGCGTTGTATTCGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTAAGGgtaggtaaccatcatcttcctggttttctttttacaatgcttgtaatttt #### Ddb1_ID2926_11 --> 2 - 2 Original Alignment gtTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAag gtcttgagtgctgactcatgatccattcttttctttttcataatgaataggtTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAaggtgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt Alignment from CESAR gtTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAag gtcttgagtgctgactcatgatccattcttttctttttcataatgaataggtTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAaggtgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt Alignment from Spaln_aa2Genome GTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAAG gtcttgagtgctgactcatgatccattcttttctttttcataatgaatagGTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAAGgtgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt Alignment from Spaln_nt2Genome GTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAAG gtcttgagtgctgactcatgatccattcttttctttttcataatgaatagGTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAAGgtgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt Alignment from Pairagon GTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAAG gtcttgagtgctgactcatgatccattcttttctttttcataatgaatagGTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAAGgtgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt Alignment from Exonerate_protein2genome GTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAAG gtcttgagtgctgactcatgatccattcttttctttttcataatgaatagGTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAAGgtgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt Alignment from Exonerate_coding2genome GTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAAG gtcttgagtgctgactcatgatccattcttttctttttcataatgaatagGTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAAGgtgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt Alignment from GeneWise GTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACGGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAAGAG gtcttgagtgctgactcatgatccattcttttctttttcataatgaatagGTTTATGGCCTCTGCGCTCTGACCCCGGTCGGGAGACAGATGTCACTTTGGTGCTCTCTTTTGTGGGTCAGACAAGGTgtgcgcaggcctgctcctttgtggagtgacagtgcaaggttgaggagt #### Ddb1_ID2927_12 --> 1 - 0 Original Alignment aGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagaGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt Alignment from CESAR aGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagaGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt Alignment from Spaln_aa2Genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagAGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt Alignment from Spaln_nt2Genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagAGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt Alignment from Pairagon AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagAGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt Alignment from Exonerate_protein2genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagAGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt Alignment from Exonerate_coding2genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagAGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt Alignment from GeneWise AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG tgaggagttggtctcaagcctaacctcaacgtattttatatgtttttaagAGTTCTCATGCTAAATGGAGAGGAGGTGGAAGAGACAGAACTGATGGGCTTCGTGGATGATCAGCAGACTCTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAAgtaagcgatgaggagcatcacttcacttcaattgtatataagagtggctt #### Ddb1_ID2933_18 --> 1 - 0 Original Alignment gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattaggAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata Alignment from CESAR gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattaggAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata Alignment from Spaln_aa2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattagGAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata Alignment from Spaln_nt2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattagGAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata Alignment from Pairagon GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattagGAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata Alignment from Exonerate_protein2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattagGAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata Alignment from Exonerate_coding2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattagGAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata Alignment from GeneWise GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG atggctcacactttgtcaagtggtaccacctgttctctgactggtattagGAAAATTTGCTATGAGGAAGTGTCTCAGTGCTTTGGGGTTCTATCCAGCCGCATTGAAGTCCAAGATAGTAGTGGAGGCACTACTGCGTTAAGGCCCAGTGCCAGCACCCAGgtaagtacagtggagaaggatggcagtggagtgagcaagcattcctcata #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagtgCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATggtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagtgCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATggtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAggtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAggtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aggacttcttagggagaagggttcaggaatcaattgaatttatttcctagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATTGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCTACCCCTACACAGGGCTCAGTGCTTTTTGGCACAGTCAATAGCATGATAGgtaagtgtcattcctggtgagcacacccggctacagccacctcatgccag #### Dnajc4_ID1966_2 --> 1 - 0 Original Alignment gTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcaggTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc Alignment from CESAR gTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcaggTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc Alignment from Spaln_aa2Genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcagGTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc Alignment from Spaln_nt2Genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcagGTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc Alignment from Pairagon GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcagGTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc Alignment from Exonerate_protein2genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcagGTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc Alignment from Exonerate_coding2genome GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcagGTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc Alignment from GeneWise GTCTGTCCCTACTAATTACTATGAATTGTTGGGCGTGCATCCGGGTGCCAGCGCTGAAGAGATTAAACGTGCTTTTTTCACCAAGTCAAAAGAG ggtgccctttgacctcctgagtacctacctcagacacacacccttctcagGTCAGTCCCTACTAATTATTATGAATTGTTGGGCGTGCATCCAGGTGCCAGCACTGAAGAGATTAAACGTGCTTTCTTCACCAAGCCAAAAGAGgtagggctaccccctgcccccaaggtcagggagataggagaaaccttagc #### Dnmbp_ID8853_13 --> 0 - 1 Original Alignment CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAggtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg Alignment from CESAR CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAggtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg Alignment from Spaln_aa2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg Alignment from Spaln_nt2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg Alignment from Pairagon CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg Alignment from Exonerate_protein2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg Alignment from Exonerate_coding2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg Alignment from GeneWise CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tgcagtttgctttttacctaacacagcttttttgtgattaaaaattatagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTCAATGCTGCGCAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAATCGTTGGCTCGTGGACAATGGAGgtatgagtctgactcaggatgtctttagagttaactcaatccctacagtg #### Dnmbp_ID8855_11 --> 0 - 0 Original Alignment AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTC---GCACCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac Alignment from CESAR AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTCGCA---CCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac Alignment from Spaln_aa2Genome AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTCGCA---CCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac Alignment from Spaln_nt2Genome AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTC---GCACCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac Alignment from Pairagon AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTCGC---ACCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac Alignment from Exonerate_protein2genome AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTC---GCACCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac Alignment from Exonerate_coding2genome AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTC---GCACCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac Alignment from GeneWise AAAGAGAGGACCGAGCGGCTCGTCATCAATCCCTTAAACCAGTTGTTGAACATGTTCACGGGGCCCTACAAGCTGGTGCAGAAGCGGTTCGACAAGCTCCTGGACTTCTACAACTGCACTGAGCGAGCGGAGAAGCTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAGCCCGAAACAACTACGAGGCCCTGAACTCGCAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGCCTCTTCACCAACTGCATCCACGGCTATGCCGAAGCCCACTGTGACTTCGTGCAGCAAGCCCTGGAGCAGCTGCAGCCGCTGCTGTCG gacttctgagtgtggggatgaagtgcaaccagatatgttcaaatccacagAAAGAGAGGACTGAGCGGCTTATCATCAATCCCTTAAACCAGTTGTTGAACATCTTCGCA---CCCTACAAGCTGGTGCAGAGGCGTTTTGACAAGCTTCTGGACTTCTACAACTGCATTGAGCGAGCAGAGAAACTGAAGGACAAGAAGACTCTGGAGGAGCTGCAGTCAACACGAAACAACTATGAAGCTTTGAACTCACAGCTGCTGGACGAGCTGCCCAAGTTCCAGCAGTACGCCCAGAGTCTCTTTACCAACTGCATCTACGGCTATGCTGAAGCCCACTGTGACTTTGTGCAGCAAGCTTTGGAGCAGCTGCAGCCACTGCTGTCAgtaccgctttcccttgtggtgccaagtcagtgctgaagtagtggtggaac #### Dnmbp_ID8858_8 --> 2 - 0 Original Alignment tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagtgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from CESAR tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagtgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Spaln_aa2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Spaln_nt2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Pairagon TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Exonerate_protein2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Exonerate_coding2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from GeneWise TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG tttggtgcaggggaagagctcttggccaatctattgtgtcttgttcccagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCCATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtaacatctgattttgtctatcagggtctgggcccacatacaaaagttac #### Dnmbp_ID8862_4 --> 2 - 0 Original Alignment acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagacATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg Alignment from CESAR acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagacATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg Alignment from Spaln_aa2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg Alignment from Spaln_nt2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg Alignment from Pairagon ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg Alignment from Exonerate_protein2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg Alignment from Exonerate_coding2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg Alignment from GeneWise ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG tcacagacatgactctcctcacttcccactgacctgacttattcttacagACATGACTCTCCTCACTTCCCAGTCTTCATCCCTGGCAGCCCCTTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGTTGGAAAAGAGAGCCAAGGTGGTAGCGGAGCTATTGCAGATGGAGAGAGACTATATCCGGGATTTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAAGCACAGgtaagtaatgggaggtagcccaacaatgtgcccccagcatgttggagttg #### Dntt_ID8078_4 --> 0 - 0 Original Alignment GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag Alignment from CESAR GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag Alignment from Spaln_aa2Genome GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag Alignment from Spaln_nt2Genome GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag Alignment from Pairagon GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag Alignment from Exonerate_protein2genome GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag Alignment from Exonerate_coding2genome GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag Alignment from GeneWise GATGCCCTTGATATCCTGGCTGAAAATGATGAGCTTAGAGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCGTCCTCTGTACTGAAATCTCTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTGAAGAGTATCATAGAG gtgggcttttgaatgactctcaggactgaacctgttctgtgcatttccagGATGCGCTTGATATCCTGGCTGAGAATGATGAGCTTAGGGAGAATGAAGGTTCTTGCCTGGCATTCATGCGAGCATCCTCTGTACTGAAGTCACTGCCATTCCCCATCACCAGCATGAAAGACACAGAGGGGATTCCTTGCCTAGGGGACAAGGTAAAAAGTATCATAGAGgtatcggaggactggactgggggacgactgtataactgtctagtgaacag #### Dntt_ID8081_7 --> 2 - 2 Original Alignment gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaaggaTTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCaggcaagtgatataactgtgttttggaaccccttttctctggaaggatgaaa Alignment from CESAR gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaaggaTTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCaggcaagtgatataactgtgttttggaaccccttttctctggaaggatgaaa Alignment from Spaln_aa2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaagGATTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCAGgcaagtgatataactgtgttttggaaccccttttctctggaaggatgaaa Alignment from Spaln_nt2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaagGATTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCAGgcaagtgatataactgtgttttggaaccccttttctctggaaggatgaaa Alignment from Pairagon GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaagGATTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCAGgcaagtgatataactgtgttttggaaccccttttctctggaaggatgaaa Alignment from Exonerate_protein2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaagGATTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCAGgcaagtgatataactgtgttttggaaccccttttctctggaaggatgaaa Alignment from Exonerate_coding2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaagGATTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCAGgcaagtgatataactgtgttttggaaccccttttctctggaaggatgaaa Alignment from GeneWise GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAGGGGTAAG tgtcgacatccagtcctctcatgcctcctttctgccttgtttgattgaagGATTCCAGTACTATGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCGCAGG---CAAgtgatataactgtgttttggaaccccttttctctggaaggatg #### Dock8_ID5376_2 --> 1 - 0 Original Alignment gTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgccctctctttctgtgttcaggTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc Alignment from CESAR gTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgccctctctttctgtgttcaggTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc Alignment from Spaln_aa2Genome GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgccctctctttctgtgttcagGTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc Alignment from Spaln_nt2Genome GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgccctctctttctgtgttcagGTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc Alignment from Pairagon GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgccctctctttctgtgttcagGTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc Alignment from Exonerate_protein2genome GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgccctctctttctgtgttcagGTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc Alignment from Exonerate_coding2genome GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgccctctctttctgtgttcagGTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc Alignment from GeneWise GCGCTCAAGATCAACAGGTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA gttagttagttgaaattaatcactttgtcgcccTCTCTTTCTGTGTTCAGGTATTCATCGTCAGAAATAAGGAAGCAGTTTACACTCCCACCCAACCTTGGACAGTACCATCGGCACAGTATTAGTACATCTGGGTTCCCCTCTCTTCAGCTAgtatgttgagttacaggtttgttgggtcagtggtcagggactgaagtacc #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACaagtagtgatgtctcagagtcccaaacacctactagaaacatctatatactc Alignment from CESAR GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAGTCC---AGGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACaagtagtgatgtctcagagtcccaaacacctactagaaacatctatatactc Alignment from Spaln_aa2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAG---TCCAGGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtagtgatgtctcagagtcccaaacacctactagaaacatctatatactc Alignment from Spaln_nt2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAGTCCA---GGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtagtgatgtctcagagtcccaaacacctactagaaacatctatatactc Alignment from Pairagon GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAGTCCA---GGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtagtgatgtctcagagtcccaaacacctactagaaacatctatatactc Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtagtgatgtctcagagtcccaaacacctactagaaacatctatatactc Alignment from Exonerate_coding2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtagtgatgtctcagagtcccaaacacctactagaaacatctatatactc Alignment from GeneWise GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAAG-- tatagagccccaaattcctctgactctggtcatttttggcttttcctcagGTCATCTATGGCAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAGTAgtgatgtctcagagtcccaaacacctactagaaacatctatatactc #### Dock8_ID5402_23 --> 0 - 0 Original Alignment ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat Alignment from CESAR ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat Alignment from Spaln_aa2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat Alignment from Spaln_nt2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat Alignment from Pairagon ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat Alignment from Exonerate_protein2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat Alignment from Exonerate_coding2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat Alignment from GeneWise ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG tctgctcatgatgtccaggaatttgccttttttttttataattttcctagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCTCTGGCAACAGTGAAGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtaagtagcagggcagaaaaagggtagcctcaccccaagagaggcttaat #### Dock8_ID5406_25 --> 0 - 0 Original Alignment GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt Alignment from CESAR GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt Alignment from Spaln_aa2Genome GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt Alignment from Spaln_nt2Genome GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt Alignment from Pairagon GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt Alignment from Exonerate_protein2genome GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt Alignment from Exonerate_coding2genome GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt Alignment from GeneWise GTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTTCGGAGGACTCGTTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACCTCGGAGATAGCAGCCCTTTTAGTGAAACCTCAGAAG aattgcttattcgccaacctttgtggtgtaatccattattctttgcctagGTGAAAAGCATGGCACAGTATGTCCATAACCTGGATAAACGGGACAGTTTCCGGAGGACTCGGTTTTCTGACCGCTTCAAAGATGACATAACTACCATTGTTAATGTGGTCACATCGGAGATAGCAGCTCTTTTAGTGAAACCTCAGAAGgtaagggtgcaattctgattaaacaattgtttgccttaactggctatgtt #### Dock8_ID5412_31 --> 0 - 0 Original Alignment CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt Alignment from CESAR CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt Alignment from Spaln_aa2Genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt Alignment from Spaln_nt2Genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt Alignment from Pairagon CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt Alignment from Exonerate_protein2genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt Alignment from Exonerate_coding2genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt Alignment from GeneWise CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG cttgtttccttgccatgctgcctggagctgtatttatttattttgtgcagCCCTATAAGCAGTACAACATGCTGAATGCAGACGCTACCCGCCACCTCATGATTTGCTTCCTCTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCCTCCATGCAGCTCAATAGGATTTTAGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAGgtaggaggtgggggtggaaaatcttttagctgttccagttctgtcttctt #### Dock8_ID5421_39 --> 1 - 0 Original Alignment aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagaATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg Alignment from CESAR aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagaATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg Alignment from Spaln_aa2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagAATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg Alignment from Spaln_nt2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagAATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg Alignment from Pairagon AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagAATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg Alignment from Exonerate_protein2genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagAATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg Alignment from Exonerate_coding2genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagAATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg Alignment from GeneWise AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG agcagtgatgttgaaaggttgtccatgattaataacttttacttttgtagAATTGCCAAGAGTTACCAGGCATCACCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACTCTAAGAAGAAGTGCTTCACAGAGGCTGCTATGTGCCTGGTGCATGCAGCTGCCCTGGTGGCTGAGTACCTGAGCATGCTGGAGGACCACAGATACCTGCCTGTAGGAAGCATTAGCTTCCAAgtgagtcaagcagtgcatccaaccaagagctggattccttccacttgagg #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct #### Dpf2_ID1311_3 --> 2 - 1 Original Alignment gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg attttttggggctggggcagtgtttaattctttctttcttcttttttcaggaCTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAggtaattactggggggtcagagagatcaattgcttagtggatttgcttagc Alignment from CESAR gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg attttttggggctggggcagtgtttaattctttctttcttcttttttcaggaCTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAggtaattactggggggtcagagagatcaattgcttagtggatttgcttagc Alignment from Spaln_aa2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctggggcagtgtttaattctttctttcttcttttttcagGACTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAGgtaattactggggggtcagagagatcaattgcttagtggatttgcttagc Alignment from Spaln_nt2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctggggcagtgtttaattctttctttcttcttttttcagGACTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAGgtaattactggggggtcagagagatcaattgcttagtggatttgcttagc Alignment from Pairagon GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctggggcagtgtttaattctttctttcttcttttttcagGACTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAGgtaattactggggggtcagagagatcaattgcttagtggatttgcttagc Alignment from Exonerate_protein2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctggggcagtgtttaattctttctttcttcttttttcagGACTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAGgtaattactggggggtcagagagatcaattgcttagtggatttgcttagc Alignment from Exonerate_coding2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctggggcagtgtttaattctttctttcttcttttttcagGACTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAGgtaattactggggggtcagagagatcaattgcttagtggatttgcttagc Alignment from GeneWise GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctggggcagtgtttaattctttctttcttcttttttcagGACTGGCCTCAGGCCAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCATCAATCAAACCAGgtaattactggggggtcagagagatcaattgcttagtggatttgcttagc #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGgagtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGgagtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac #### Dpp3_ID745_8 --> 1 - 1 Original Alignment tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagtTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAggtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from CESAR tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagtTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAggtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Spaln_aa2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Spaln_nt2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Pairagon TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Exonerate_protein2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Exonerate_coding2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from GeneWise TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGaggtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGaggtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagcccccagggtctgttgtcttcttgttccccagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCACTTTTGGATTCAGGACAAAGGCCCCATTGTAGAGAGgtaagttgccagcccatgtttccactcccccaacccccttccaatgcctt #### Dpp3_ID750_3 --> 0 - 0 Original Alignment GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga Alignment from CESAR GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga Alignment from Spaln_aa2Genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga Alignment from Spaln_nt2Genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga Alignment from Pairagon GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga Alignment from Exonerate_protein2genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga Alignment from Exonerate_coding2genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga Alignment from GeneWise GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG tcgcttctttctccttgaaggacaagcttactatctccattacctttcagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTAGAACCGAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagtcctatccttcaagaacctggtaaaaactgaaggcacccttgaga #### Dpp3_ID751_2 --> 0 - 0 Original Alignment GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt Alignment from CESAR GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt Alignment from Spaln_aa2Genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt Alignment from Spaln_nt2Genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt Alignment from Pairagon GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt Alignment from Exonerate_protein2genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt Alignment from Exonerate_coding2genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt Alignment from GeneWise GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG aggggaaaaagcagttgtgtaacatgtttttctaatttttttcttcttagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAAgtcggttgtggttagagaataaagaggggactcttgttggagtcaaaggt #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCtgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCtgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag Alignment from Exonerate_coding2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccatgtgttggggatgcaagaatgaactttctgcttcctgtttctctagACGCGGATCAAAAAGATCATGCAGACAGATGAAGAGATTGGGAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtgaggtaccaggggccagttaggctgaggggcatggggtgggactacag #### Dtx4_ID3398_6 --> 0 - 0 Original Alignment GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga Alignment from CESAR GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga Alignment from Spaln_aa2Genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga Alignment from Spaln_nt2Genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga Alignment from Pairagon GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga Alignment from Exonerate_protein2genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga Alignment from Exonerate_coding2genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga Alignment from GeneWise GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG cttgctgtacatgagtcataattgctacctgagtctggttttgtctatagGACTGTACCTTCTGTATGGAGCGTCTCACGACCCCTTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTGTCAAGGTGTGGTCACATCTACCACATTCACTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtaagataagttatgtgagcaagctgtgtcaggtcaagactggttcctga #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCggtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCggtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtccatacatgatctgcactcaccctctcacccggcgatctacccgcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtaagagtcacttgtgatattgagtagagcttcctcacccccctgcctcc #### Ehbp1l1_ID1219_16 --> 2 - 2 Original Alignment gtGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGct tctaccctgaggcatctctggtgactggtcccatttcactcatgttacaggtGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGctgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc Alignment from CESAR gtGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGct tctaccctgaggcatctctggtgactggtcccatttcactcatgttacaggtGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGctgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc Alignment from Spaln_aa2Genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT tctaccctgaggcatctctggtgactggtcccatttcactcatgttacagGTGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGCTgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc Alignment from Spaln_nt2Genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT tctaccctgaggcatctctggtgactggtcccatttcactcatgttacagGTGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGCTgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc Alignment from Pairagon GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT tctaccctgaggcatctctggtgactggtcccatttcactcatgttacagGTGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGCTgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc Alignment from Exonerate_protein2genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT tctaccctgaggcatctctggtgactggtcccatttcactcatgttacagGTGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGCTgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc Alignment from Exonerate_coding2genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT tctaccctgaggcatctctggtgactggtcccatttcactcatgttacagGTGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGCTgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc Alignment from GeneWise GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT tctaccctgaggcatctctggtgactggtcccatttcactcatgttacagGTGCCAACAGGCTACAGGAGGAGGTGCTAATTCAGGAATGGTTTACCCTGGCCAATAAGAAAAATGCGCTCATCCGGAGGCAGGATCAGCTGCAGCTGCTgtgagctggctttaaccctcttattgctaggtctctgtccacctgcccgc #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctaggtGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctaggtGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Pairagon GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Exonerate_coding2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from CESAR GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Spaln_aa2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Spaln_nt2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Pairagon GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Exonerate_protein2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from Exonerate_coding2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt Alignment from GeneWise GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctggtgttgttcccagaaactctgtgtccagttttcctgtttccctagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaagttactgggtacagcagacctccaattgagatcttaaggctccagt #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Exonerate_protein2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from Exonerate_coding2genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gataaggactcagcagtggtggggaataggacatgcttctatcttctcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTCGGCACTGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAGGgtgagtgccctgagcttggacatgggcaggcactgcagagagctcatggg #### Ehbp1l1_ID1233_2 --> 1 - 0 Original Alignment gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcaggCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa Alignment from CESAR gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcaggCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa Alignment from Spaln_aa2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcagGCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa Alignment from Spaln_nt2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcagGCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa Alignment from Pairagon GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcagGCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa Alignment from Exonerate_protein2genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcagGCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa Alignment from Exonerate_coding2genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcagGCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa Alignment from GeneWise GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ggaaaccggattgagtgtagctaagtagtttctatctcttctctgagcagGCAGCCTGACAAGCTGGTAGTGGTATGGACTCGGCGGAATCGAAGGATCTGCTCCAAGgtgggtaaggtaagcttggggctgggtagggggagggctcaatatgggaa #### Ehd1_ID1563_4 --> 0 - 0 Original Alignment GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga Alignment from CESAR GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga Alignment from Spaln_aa2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga Alignment from Spaln_nt2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCAA---TGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga Alignment from Pairagon GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCAA---TGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga Alignment from Exonerate_protein2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga Alignment from Exonerate_coding2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga Alignment from GeneWise GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG gagggtagcatgccaagcaagaccctgacatggtgataactgttttgcagGTCCATGCCTACATCATCAGCTCTCTCAAGAAGGAGATGCCCAATGTTTTTGGGAAAGAGAGCAAGAAGAAAGAACTGGTGAACAACCTGGGAGAGATCTACCAGAAGATTAAGCAGGAGCACCAAATCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgagtacattaggccagcctatccagggctgggtatccagctctgtaga #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG tgcatgatttaactgatgaactagctagattttctcttgattttccctagGTCCTCAGGACTCCGGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaagtagcatccattcatggtattgagttatgtccttaactttctccta #### Eif3a_ID13310_20 --> 2 - 2 Original Alignment gtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCag ttgataaattgttaaaaaaaatgatgttatgactgtgttgtgttcttcaggtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATGT---AGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCaggtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt Alignment from CESAR gtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCag ttgataaattgttaaaaaaaatgatgttatgactgtgttgtgttcttcaggtGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATGT---AGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCaggtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt Alignment from Spaln_aa2Genome GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaatgatgttatgactgtgttgtgttcttcagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATGT---AGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt Alignment from Spaln_nt2Genome GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTC------AGAAGACCCAG ttgataaattgttaaaaaaaatgatgttatgactgtgttgtgttcttcagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATG---TAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt Alignment from Pairagon GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaatgatgttatgactgtgttgtgttcttcagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATG---TAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt Alignment from Exonerate_protein2genome TTGTCAAGCCAGGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaatgatgttatgactgtgtTGTGTTCTTCAGGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATGT---AGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt Alignment from Exonerate_coding2genome TTGTCAAGCCAGGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGAT------CGATTCAGAAGACCCAG ttgataaattgttaaaaaaaatgatgttatgactgtgtTGTGTTCTTCAGGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATGT---AGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt Alignment from GeneWise GTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGAGAGAGATGGGGACCGGGAGGATCGATTCAGA------AGACCCAG ttgataaattgttaaaaaaaatgatgttatgactgtgttgtgttcttcagGTGGATGGAGAGAGAAAGAAAAGGCTAGAGAAGAGAGCTGGGCCCCACCTCGAGAATTAAGACCATCAGAAGAACGTGAATGT---AGAGACAAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGAGGGAGAGATGGGGACCGGGAGGATCGATTCCGATTCAGAAGACCCAGgtaagaaatgacataactgtggtaacaggtttgtttctctcgaattcagt #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttctgatgcaacaaagtaagtataatcctctcttgttcttttgctcagGATCTTGAAGAACTGGACCCAGATTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAAGAAAAAAAGGAACTTCAGGAACGCCTGAAGACTCAAGAAAAGAAGgtacacgtgggtcattgataggttctaaaccaaactggacctaaactgct #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG catacagtcgaaatatatgcttggatatttcctgctgttttgtcatctagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAGTCATCAGACCTGCACACATTCTGgtaagcgtcttgaggagagatgatctgcacaaactttgatatggtgaggg #### Eif3a_ID13320_10 --> 0 - 0 Original Alignment GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa Alignment from CESAR GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa Alignment from Spaln_aa2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa Alignment from Spaln_nt2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa Alignment from Pairagon GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa Alignment from Exonerate_protein2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa Alignment from Exonerate_coding2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa Alignment from GeneWise GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tgtagttatgtagtggctgttcacactacggcaaccttctcaccccacagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtgagtgttataaagaggagtggcaggttagtaggaacttgagtactgaa #### Eif3a_ID13321_9 --> 0 - 0 Original Alignment GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg Alignment from CESAR GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg Alignment from Spaln_aa2Genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg Alignment from Spaln_nt2Genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg Alignment from Pairagon GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg Alignment from Exonerate_protein2genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg Alignment from Exonerate_coding2genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg Alignment from GeneWise GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG gtgtctggtgaatatgaactttttttttaacactgttttctttttttcagGTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCACCAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGgtaagcgcaaatgatctatggagaggctgatatttgtgccccggaatatg #### Elovl3_ID9745_2 --> 1 - 2 Original Alignment gGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCag aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttaggGCA------ATTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTCCTTC---CTGGCAACATTCaggtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg Alignment from CESAR gGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCag aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttagg------GCAATTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTCC---TTCCTGGCAACATTCaggtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg Alignment from Spaln_aa2Genome GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttagG------GCAATTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTCC---TTCCTGGCAACATTCAGgtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg Alignment from Spaln_nt2Genome GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttagGG------CAATTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTC---CTTCCTGGCAACATTCAGgtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg Alignment from Pairagon GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttagGGCAA------TTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTC---CTTCCTGGCAACATTCAGgtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg Alignment from Exonerate_protein2genome GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttagG------GCAATTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTCC---TTCCTGGCAACATTCAGgtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg Alignment from Exonerate_coding2genome GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttagG------GCAATTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTCC---TTCCTGGCAACATTCAGgtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg Alignment from GeneWise GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggcattcttttaagcaatgcccactgtaaaatcatttttcttttcttagG------GCAATTCTCATAGTAGTTGTCTATTTGTTGCTCATAATTGTTGGCCAGACCTACATGAGAATGCGGAAGAGCTTCAGCTTACAGAGGCCTCTCATCCTCTGGTCCTTC---CTGGCAACATTCAGgtaaaatcgcactccaccctgtgctctccatcaattttttagtccatatg #### Elovl3_ID9746_3 --> 1 - 1 Original Alignment tATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGg ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagtATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAggtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga Alignment from CESAR tATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGg ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagtATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAggtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga Alignment from Spaln_aa2Genome TATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGG ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagTATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAGgtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga Alignment from Spaln_nt2Genome TATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGG ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagTATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAGgtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga Alignment from Pairagon TATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGG ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagTATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAGgtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga Alignment from Exonerate_protein2genome TATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGG ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagTATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAGgtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga Alignment from Exonerate_coding2genome TATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGG ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagTATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAGgtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga Alignment from GeneWise TATCCTGGGTACTCTGAGGATGTGGAAGTTTATGGCAACAGTGATGTTTACAGTGGGCCTCAAGCAAACCGTGTGCTTTGCCATCTACACGGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGCAAGGTTGTTGAACTGG ccttgccaactggtgaccttttgataccccctctgttgtctcctggtcagTATCCTGGGTACTTTGAGGATGTGGAAGTTTATGGCGATTGTGATGTTCACCGTCGGCCTCAAGCAAACTGTGTGCTTTGCCATCTATACAGATGACGCCGTAGTCAGATTCTGGTCCTTTCTCTTTCTTCTCAGTAAGGTTGTTGAACTAGgtgagtataggctttgtcttaagtgcaggggctgatatctggtgcaatga #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACacgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACacgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC attattctgccttactgggagccatgggcggcttgtcctcttttgtgcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAGAAGAAGAGTTGGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTGAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGCAGCAGCAGCAGTGGGGCAGGCTCACCTGGTCCTCCAGGAATCCTCAGGCCGGTGCAACCCCTCCAGCGTTCGGACACgtaagctagctagtatggatgggaaagctgattaacgggcttgacttttt #### Eml3_ID2504_4 --> 1 - 2 Original Alignment gCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGag aaagctgattaacgggcttgactttttaaatctttaactgcattatttaggCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGaggtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct Alignment from CESAR gCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGag aaagctgattaacgggcttgactttttaaatctttaactgcattatttaggCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGaggtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct Alignment from Spaln_aa2Genome GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG aaagctgattaacgggcttgactttttaaatctttaactgcattatttagGCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGAGgtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct Alignment from Spaln_nt2Genome GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG aaagctgattaacgggcttgactttttaaatctttaactgcattatttagGCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGAGgtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct Alignment from Pairagon GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG aaagctgattaacgggcttgactttttaaatctttaactgcattatttagGCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGAGgtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct Alignment from Exonerate_protein2genome GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG aaagctgattaacgggcttgactttttaaatctttaactgcattatttagGCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGAGgtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct Alignment from Exonerate_coding2genome GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG aaagctgattaacgggcttgactttttaaatctttaactgcattatttagGCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGAGgtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct Alignment from GeneWise GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG aaagctgattaacgggcttgactttttaaatctttaactgcattatttagGCCCCGGAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAAAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTACTATTGCGGTCAGGGAGCACAGAGAGgtacgtaagggtcacttccttccttgaaatttgctgtgacccacattcct #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagtTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTtggtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagtTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTtggtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagtCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from CESAR cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagtCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Pairagon CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactggtatgtttgttgtttcctgcagGGACACACTGACGAGCTC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactgatgttttcatatccacttttagGGACACACTGACGAGCTC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGGTAAGGACTGGTATGTTTGTTGTTTCCtgCAGGGACACACTGACGAGCTC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGGTAAGGACTGGTATGTTTGTTGTTTCCTGCAGGGACACACTGACGAGCTC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactggtatgtttgttgtttcctgcagGGACACACTGACGAGCTC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactggtatgtttgttgtttcctgcagGGACACACTGACGAGCTC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactggtatgtttgttgtttcctgcagGGACACACTGACGAGCTC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagacaaatggttagtatgctcttgcttactttcttttcaatacaagATTCCAGAACACTTTGGGGCAGTGAGAGCCATTGCTGAAGGGCTTGGTTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaaggactggtatgtttgttgtttcctgcagGGACACACTGACGAGCTC #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccaggTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAggtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccaggTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAggtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgcctccttggttctccctctgtcccttccagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACGGATGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAGgtactcgtgcccaccccagacctgggtcctggcctggctcttcttcatca #### Eml3_ID2520_19 --> 0 - 1 Original Alignment GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACt tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACtgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct Alignment from CESAR GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACt tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACtgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct Alignment from Spaln_aa2Genome GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACTgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct Alignment from Spaln_nt2Genome GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACTgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct Alignment from Pairagon GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACTgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct Alignment from Exonerate_protein2genome GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACTgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct Alignment from Exonerate_coding2genome GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACTgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct Alignment from GeneWise GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT tgaggaagggaaatgttggacatcttgtacatggattattaattcaacagGGGCACTCCAGTTTTATCACTCGCCTCGACTGGTCCAAGGACGGAAATTTCATCATGTCCAATTCCGGGGATTATGAGATTTTCTACTgtaagtggcagggagctgagggtcatttaattttcttttttttttcgtct #### Eno4_ID12840_12 --> 2 - 0 Original Alignment gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt Alignment from CESAR gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt Alignment from Spaln_aa2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt Alignment from Spaln_nt2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt Alignment from Pairagon GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt Alignment from Exonerate_protein2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt Alignment from Exonerate_coding2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt Alignment from GeneWise GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatcaccatcctgtacgaaatctctccccctccctttacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTTGATTTGgtaagtacaggaatgatggtcaaccgcataaatgccaaaccaccactttt #### Entpd1_ID8011_6 --> 0 - 0 Original Alignment GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct Alignment from CESAR GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct Alignment from Spaln_aa2Genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct Alignment from Spaln_nt2Genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct Alignment from Pairagon GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct Alignment from Exonerate_protein2genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct Alignment from Exonerate_coding2genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct Alignment from GeneWise GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG aacttggcaagaaggatgtccaggaattcctgtcactgtttctaccctagGAGCAGAGTTGGCTTAGCCTCATCTCAGACAGCCAGAAACAGGAAACCTTTGGTGCTTTGGATCTTGGTGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAATCCCCGCAAAACTCTCTGCAATTCCGTCTTTATGGTGAGGACTACACTGTGTATACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTGGCCAAGGACGTTCAGgtactggtacctaaattcttttgtgctctgctcacatctggtccactgct #### Entpd7_ID8800_9 --> 1 - 0 Original Alignment aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagaCTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCAT---CCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga Alignment from CESAR aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagaCTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCAT---CCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga Alignment from Spaln_aa2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagACTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCAT---CCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga Alignment from Spaln_nt2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagACTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCA---TCCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga Alignment from Pairagon ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagACTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCA---TCCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga Alignment from Exonerate_protein2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagACTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCAT---CCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga Alignment from Exonerate_coding2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagACTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCAT---CCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga Alignment from GeneWise ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG ctcacggtacgtttgatggtgtctctctattaaaatgtctcttccattagACTGCTTGGCCAGAAGACAGGCCTGAGCCCTGATAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGTCGGACATTGCTGAGCCCTCTGCTGGCCCGCTCCAATACTAGTCAGGCTTCGCTGAACGGAATTTACCAT---CCAATTGATTTCAACAACGGTGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCAGTGAAGATGTGCTGCGCATCGGTGGCCACTACCATGGGACCACATTTGCCAAGGCTGCTCAGgtaattcgttaagagtcaacatctcatattggtgtcttgcatttaatgga #### Erlin1_ID8901_3 --> 0 - 2 Original Alignment ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact Alignment from CESAR ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact Alignment from Spaln_aa2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact Alignment from Spaln_nt2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact Alignment from Pairagon ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact Alignment from Exonerate_protein2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact Alignment from Exonerate_coding2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact Alignment from GeneWise ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG aaaaaaacaccaaataggaataaatcttaaaactctatttctaatttcagACAACACTACAGACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaagcccccttcctttgtggcccattgacagcgctacagcgacagtact #### Ermp1_ID6319_11 --> 0 - 0 Original Alignment ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt Alignment from CESAR ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt Alignment from Spaln_aa2Genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt Alignment from Spaln_nt2Genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt Alignment from Pairagon ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt Alignment from Exonerate_protein2genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt Alignment from Exonerate_coding2genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt Alignment from GeneWise ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ctcactatcaagaatatgaattagtgatggttgatttttcttccttccagATTACCTTCATCTACCTCGTAAACAGCACAAAGAAAACAATTCTGACTCTAATATTGGTGTGTGCAGTCACCCTCCTCCTTGTCAGCAGTGGGGCCTTTTTCCCATATAGTTCTAATCCTGAGAGTCCGAAGCCAAAACGGGTGTTTCTTCAGgtagaggtcgcagcaatgagatttaagaggtgagaagtgccttgttagtt #### Ermp1_ID6320_10 --> 2 - 0 Original Alignment gtGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccaggtGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac Alignment from CESAR gtGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccaggtGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac Alignment from Spaln_aa2Genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccagGTGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac Alignment from Spaln_nt2Genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccagGTGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac Alignment from Pairagon GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccagGTGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac Alignment from Exonerate_protein2genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccagGTGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac Alignment from Exonerate_coding2genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccagGTGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac Alignment from GeneWise GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT tgtattgtgccctataaccacataggctcagtaatccatcctatccccagGTGCCCAAGGAAGATTTGTCACTCTGTACCTTTTGGGCATGTATATCCCGTACCTATACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGGTCAGAGATCCCCCCCGGTGTTGTGCTGGCCTCCGTCCTGGCTGTCTGTGTGATGATCCTATCTTCTTATTTTgtaagtaaatgtgtcctgttttacagtttattcagatgatgcctgaccac #### Exoc6_ID7364_3 --> 0 - 0 Original Alignment GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcagGTGCAGGTTACTGATACCAAT---CAGTTTCAAGATGCTGGAAAAGAGgtgtccaagtgagggtggagggcataggctccctcccttcattcataatc Alignment from CESAR GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcagGTGCAGGTTACTGATACCAATCAG---TTTCAAGATGCTGGAAAAGAGgtgtccaagtgagggtggagggcataggctccctcccttcattcataatc Alignment from Spaln_aa2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcagGTGCAGGTTACTGATACCAAT---CAGTTTCAAGATGCTGGAAAAGAGgtgtccaagtgagggtggagggcataggctccctcccttcattcataatc Alignment from Spaln_nt2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcagGTGCAGGTTACTGATACCAATC---AGTTTCAAGATGCTGGAAAAGAGgtgtccaagtgagggtggagggcataggctccctcccttcattcataatc Alignment from Pairagon GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcagGTGCAGGTTACTGATACCAATC---AGTTTCAAGATGCTGGAAAAGAGgtgtccaagtgagggtggagggcataggctccctcccttcattcataatc Alignment from Exonerate_protein2genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcagGTGCAGGTTACTGATACCAAT---CAGTTTCAAGATGCTGGAAAAGAGgtgtccaagtgagggtggagggcataggctccctcccttcattcataatc Alignment from Exonerate_coding2genome tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcaggtgcaggttactgataccaatcagtttcaagatgctggaaaagaggtgtccaagtgagggtggagggcataggctccctcccttcattcataatc Alignment from GeneWise GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatacatgcgtcaactggtgcctcatttcagGTGCAGGTTACTGATACCAATCAG---TTTCAAGATGCTGGAAAAGAGgtgtccaagtgagggtggagggcataggctccctcccttcattcataatc #### Exoc6_ID7367_6 --> 1 - 0 Original Alignment gTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttaggTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt Alignment from CESAR gTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttaggTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt Alignment from Spaln_aa2Genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt Alignment from Spaln_nt2Genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt Alignment from Pairagon GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt Alignment from Exonerate_protein2genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt Alignment from Exonerate_coding2genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt Alignment from GeneWise GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG ttcattgcctggccttgcataatgtttataactctatttctttcctttagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGAGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTAGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtaagtctgacagtctttatccagggtaatcagtgtgtccacgcatgctt #### Exoc6_ID7378_15 --> 0 - 2 Original Alignment CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAaggtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc Alignment from CESAR CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAaggtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Spaln_aa2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGgtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Spaln_nt2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGgtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Pairagon CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGgtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Exonerate_protein2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGgtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Exonerate_coding2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGgtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc Alignment from GeneWise CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG agaattttttttaaaatctcaaatgcagctaattatggtttctgttttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGgtacgactattcacatgaaacctgcttttataggaagtcaaaactttgtc #### Exosc1_ID8332_7 --> 0 - 1 Original Alignment ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAggtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag Alignment from CESAR ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAggtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag Alignment from Spaln_aa2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag Alignment from Spaln_nt2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag Alignment from Pairagon ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag Alignment from Exonerate_protein2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag Alignment from Exonerate_coding2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag Alignment from GeneWise ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG aacaaggaccggaaggaggtgaatatccgatgccttttctcttcttttagATCTCCCTAGGAGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtaatctcttgctttcaagtctgtcatcctgggaacaatggttatctaag #### Exosc1_ID8336_3 --> 0 - 0 Original Alignment GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt Alignment from CESAR GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt Alignment from Spaln_aa2Genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt Alignment from Spaln_nt2Genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt Alignment from Pairagon GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt Alignment from Exonerate_protein2genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt Alignment from Exonerate_coding2genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt Alignment from GeneWise GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG aaacctaggtttaaatatccactacactcaacctcactatccatatccagGTTCCTGTGGTGTCGGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAACCGTCGTCACCTGTAAGgtaaataggtctcagtgattgtgatatcactgctcagtagtctcctggtt #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCaggttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCaggttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatccttggggatggtgaagacagtgcttcccacccgcttgttttccagGACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATTTCACTGCCGGGGCTGAAGGGCTTCCTGGGGCTTTTTTTCATCGTCAGgttggtacatgtggtgggatgtacaggtaggcttggacatcatggttagc #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgatcctgcactctgacatggagaccttctttctttccatgtgtgctagCTGCAGGCAACCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacagacagaaacccgggaaacgggggtggtgcaaagacaagggatgga #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agggatggatagggaagcagaagccactataattcttttatttgtcttagcGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTtagtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta agggatggatagggaagcagaagccactataattcttttatttgtcttagcGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTtagtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA agggatggatagggaagcagaagccactataattcttttatttgtcttagCGTCTTCCCCACAATGCCACGACACAACTATCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTATGGCATCAAGTATGAGTCCAAACCCCTGCTTGCAGCCTTCGCAGACATTGTTTAgtactcatgaaccttggaagctggcagcagtaaagtgagagcgtgatcag #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACcagtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACcagtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtaagtactcttagtactgttgtacattctatgatggggtagcagtacca Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtaagtactcttagtactgttgtacattctatgatggggtagcagtacca Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaagtactcttagtactgttgtacattctatgatggggtagcagtacca Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaagtactcttagtactgttgtacattctatgatggggtagcagtacca Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaagtactcttagtactgttgtacattctatgatggggtagcagtacca Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaagtactcttagtactgttgtacattctatgatggggtagcagtacca Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaagtactcttagtactgttgtacattctatgatggggtagcagtacca Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccgtttatgttgaatttgacaagctccacgtgtgcaaattttatttgcagGACGGCCGGATAGCTGTAAAGGCCTGCAAGGGCTTGATGCTCTTGGTGAGCCTACCAGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGACCGGCAGACTTACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaagtactcttagtactgttgtacattctatgatggggtagcagtacca #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtatcttcccatat Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtaatcttcatttc Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcttcccatat Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcttcccatat Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcttcccatat Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcttcccatat Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcttcccatat Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcttcccatat #### Fam160b1_ID12363_14 --> 0 - 0 Original Alignment TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg Alignment from CESAR TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg Alignment from Spaln_aa2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg Alignment from Spaln_nt2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg Alignment from Pairagon TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg Alignment from Exonerate_protein2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg Alignment from Exonerate_coding2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg Alignment from GeneWise TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattaaagcaatgcttgatcaacagTTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTCTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTTGATCAGgtcagattttggaagggtccaatcttcatcgttttgtggttaaccccagg #### Fam178a_ID9219_2 --> 1 - 1 Original Alignment gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg tactcatacttggtgttatgatgttattctgtctttttttccctgtcaaggAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAggtatggatggtaatgcgtttttgatgggttgtcctacagggcctctccat Alignment from CESAR gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg tactcatacttggtgttatgatgttattctgtctttttttccctgtcaaggAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAggtatggatggtaatgcgtttttgatgggttgtcctacagggcctctccat Alignment from Spaln_aa2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tactcatacttggtgttatgatgttattctgtctttttttccctgtcaagGAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAGgtatggatggtaatgcgtttttgatgggttgtcctacagggcctctccat Alignment from Spaln_nt2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tactcatacttggtgttatgatgttattctgtctttttttccctgtcaagGAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAGgtatggatggtaatgcgtttttgatgggttgtcctacagggcctctccat Alignment from Pairagon GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tactcatacttggtgttatgatgttattctgtctttttttccctgtcaagGAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAGgtatggatggtaatgcgtttttgatgggttgtcctacagggcctctccat Alignment from Exonerate_protein2genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tactcatacttggtgttatgatgttattctgtctttttttccctgtcaagGAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAGgtatggatggtaatgcgtttttgatgggttgtcctacagggcctctccat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tactcatacttggtgttatgatgttattctgtctttttttccctgtcaagGAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAGgtatggatggtaatgcgtttttgatgggttgtcctacagggcctctccat #### Fam178a_ID9220_3 --> 2 - 0 Original Alignment acAAACATATGTTGGATTCGCCTCAAAAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTATCTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGA---TTGCCCAAAGAGATCAAGGCACAGAAGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGACAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAGCATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGGCTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATC---AACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTAGGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCTCAACTCTG aggggatttatatgggcgatgtatatgttctcctcccccgccccctgcagacAAACATATGCTGGATTCACCTCAAAAATCAAACATCAACTACAGAGGAAATGGATTATCTATCACTGGGACAGAGCAATTTGAAAGAAAATTATCCTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTCTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAGGATCGTGGTGTCCATGAGTCACGTCGCCCTTGTATGTTTCTGCGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGACGACTGCCTAAAGAGATTAAGGCACAGAAAAAAAAACACCAGTCTCCCAAGAGAAGGAAGTCACTGTTCATTCATGAAAGCAACAGAGAGAAGAATGACAGAGACCGGGGCAAAAACAGTGAAGATTCCAGAAAACAGGCCACAGCCACAGGAGGTGACATATTCAAGCATAGCTCTAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCACCCAGGAGAAAGCACACTGGGTGCAAGGTTC---CTGTCAATAGCTTCTTATTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCATCAACTCAGAAAATTCATTCTCAGAAGCCAGCAACCTTTCCTTACGGTCATCTGGTGTAGGGAAAAACTGTAAGCCACGGCATCAACATAGCAAGCACACTGAGGCTGTACCTGGGCAGAGTAATCTCTCAACTCTGgtttgtgcagtaacttctgctgtaccatgcccaaacctaagtctacaaat Alignment from CESAR acAAACATATGTTGGATTCGCCTCAAAAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTATCTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTAT---CGATTGCCCAAAGAGATCAAGGCACAGAAGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGACAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAGCATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGGCTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGA---ATCAACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTAGGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCTCAACTCTG aggggatttatatgggcgatgtatatgttctcctcccccgccccctgcagacAAACATATGCTGGATTCACCTCAAAAATCAAACATCAACTACAGAGGAAATGGATTATCTATCACTGGGACAGAGCAATTTGAAAGAAAATTATCCTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTCTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAGGATCGTGGTGTCCATGAGTCACGTCGCCCTTGTATGTTTCTGCGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGACGACTGCCTAAAGAGATTAAGGCACAGAAAAAAAAACACCAGTCTCCCAAGAGAAGGAAGTCACTGTTCATTCATGAAAGCAACAGAGAGAAGAATGACAGAGACCGGGGCAAAAACAGTGAAGATTCCAGAAAACAGGCCACAGCCACAGGAGGTGACATATTCAAGCATAGCTCTAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCACCCAGGAGAAAGCACACTGGGTGCAAGGTTC---CTGTCAATAGCTTCTTATTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCATCAACTCAGAAAATTCATTCTCAGAAGCCAGCAACCTTTCCTTACGGTCATCTGGTGTAGGGAAAAACTGTAAGCCACGGCATCAACATAGCAAGCACACTGAGGCTGTACCTGGGCAGAGTAATCTCTCAACTCTGgtttgtgcagtaacttctgctgtaccatgcccaaacctaagtctacaaat Alignment from Spaln_aa2Genome ACAAACATATGTTGGATTCGCCTCAAAAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTATCTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTAT---CGATTGCCCAAAGAGATCAAGGCACAGAAGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGACAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAGCATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGGCTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCAACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTAGGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCTCAACTCTG aggggatttatatgggcgatgtatatgttctcctcccccgccccctgcagACAAACATATGCTGGATTCACCTCAAAAATCAAACATCAACTACAGAGGAAATGGATTATCTATCACTGGGACAGAGCAATTTGAAAGAAAATTATCCTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTCTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAGGATCGTGGTGTCCATGAGTCACGTCGCCCTTGTATGTTTCTGCGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGACGACTGCCTAAAGAGATTAAGGCACAGAAAAAAAAACACCAGTCTCCCAAGAGAAGGAAGTCACTGTTCATTCATGAAAGCAACAGAGAGAAGAATGACAGAGACCGGGGCAAAAACAGTGAAGATTCCAGAAAACAGGCCACAGCCACAGGAGGTGACATATTCAAGCATAGCTCTAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCACCCAGGAGAAAGCACACTGGGTGCAAGGTTCCTGTCAATAGCTTCTTATTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCATCAACTCAGAAAATTCATTCTCAGAAGCCAGCAACCTTTCCTTACGGTCATCTGGTGTAGGGAAAAACTGTAAGCCACGGCATCAACATAGCAAGCACACTGAGGCTGTACCTGGGCAGAGTAATCTCTCAACTCTGgtttgtgcagtaacttctgctgtaccatgcccaaacctaagtctacaaat Alignment from Spaln_nt2Genome ACAAACATATGTTGGATTCGCCTCAAAAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTATCTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTAT---CGATTGCCCAAAGAGATCAAGGCACAGAAGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGACAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAGCATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGGCTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGA---ATCAACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTAGGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCTCAACTCTG aggggatttatatgggcgatgtatatgttctcctcccccgccccctgcagACAAACATATGCTGGATTCACCTCAAAAATCAAACATCAACTACAGAGGAAATGGATTATCTATCACTGGGACAGAGCAATTTGAAAGAAAATTATCCTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTCTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAGGATCGTGGTGTCCATGAGTCACGTCGCCCTTGTATGTTTCTGCGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGACGACTGCCTAAAGAGATTAAGGCACAGAAAAAAAAACACCAGTCTCCCAAGAGAAGGAAGTCACTGTTCATTCATGAAAGCAACAGAGAGAAGAATGACAGAGACCGGGGCAAAAACAGTGAAGATTCCAGAAAACAGGCCACAGCCACAGGAGGTGACATATTCAAGCATAGCTCTAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCACCCAGGAGAAAGCACACTGGGTGCAAGGTTC---CTGTCAATAGCTTCTTATTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCATCAACTCAGAAAATTCATTCTCAGAAGCCAGCAACCTTTCCTTACGGTCATCTGGTGTAGGGAAAAACTGTAAGCCACGGCATCAACATAGCAAGCACACTGAGGCTGTACCTGGGCAGAGTAATCTCTCAACTCTGgtttgtgcagtaacttctgctgtaccatgcccaaacctaagtctacaaat Alignment from Pairagon ACAAACATATGTTGGATTCGCCTCAAAAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTATCTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTAT---CGATTGCCCAAAGAGATCAAGGCACAGAAGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGACAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAGCATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGGCTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGA---ATCAACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTAGGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCTCAACTCTG aggggatttatatgggcgatgtatatgttctcctcccccgccccctgcagACAAACATATGCTGGATTCACCTCAAAAATCAAACATCAACTACAGAGGAAATGGATTATCTATCACTGGGACAGAGCAATTTGAAAGAAAATTATCCTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTCTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAGGATCGTGGTGTCCATGAGTCACGTCGCCCTTGTATGTTTCTGCGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGACGACTGCCTAAAGAGATTAAGGCACAGAAAAAAAAACACCAGTCTCCCAAGAGAAGGAAGTCACTGTTCATTCATGAAAGCAACAGAGAGAAGAATGACAGAGACCGGGGCAAAAACAGTGAAGATTCCAGAAAACAGGCCACAGCCACAGGAGGTGACATATTCAAGCATAGCTCTAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCACCCAGGAGAAAGCACACTGGGTGCAAGGTTC---CTGTCAATAGCTTCTTATTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCATCAACTCAGAAAATTCATTCTCAGAAGCCAGCAACCTTTCCTTACGGTCATCTGGTGTAGGGAAAAACTGTAAGCCACGGCATCAACATAGCAAGCACACTGAGGCTGTACCTGGGCAGAGTAATCTCTCAACTCTGgtttgtgcagtaacttctgctgtaccatgcccaaacctaagtctacaaat Alignment from Exonerate_protein2genome ACAAACATATGTTGGATTCGCCTCAAAAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTATCTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTAT---CGATTGCCCAAAGAGATCAAGGCACAGAAGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGACAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAGCATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGGCTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGA---ATCAACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTAGGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCTCAACTCTG aggggatttatatgggcgatgtatatgttctcctcccccgccccctgcagACAAACATATGCTGGATTCACCTCAAAAATCAAACATCAACTACAGAGGAAATGGATTATCTATCACTGGGACAGAGCAATTTGAAAGAAAATTATCCTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTCTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAGGATCGTGGTGTCCATGAGTCACGTCGCCCTTGTATGTTTCTGCGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGACGACTGCCTAAAGAGATTAAGGCACAGAAAAAAAAACACCAGTCTCCCAAGAGAAGGAAGTCACTGTTCATTCATGAAAGCAACAGAGAGAAGAATGACAGAGACCGGGGCAAAAACAGTGAAGATTCCAGAAAACAGGCCACAGCCACAGGAGGTGACATATTCAAGCATAGCTCTAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCACCCAGGAGAAAGCACACTGGGTGCAAGGTTC---CTGTCAATAGCTTCTTATTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCATCAACTCAGAAAATTCATTCTCAGAAGCCAGCAACCTTTCCTTACGGTCATCTGGTGTAGGGAAAAACTGTAAGCCACGGCATCAACATAGCAAGCACACTGAGGCTGTACCTGGGCAGAGTAATCTCTCAACTCTGgtttgtgcagtaacttctgctgtaccatgcccaaacctaagtctacaaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACAAACATATGTTGGATTCGCCTCAAAAATCAAACATCAAATACAGAGGAAATGGATTATCCATCACTGGGACAGAGCAATTTGAAAGGAAATTATCTTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTTTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAAGATCGTGGTGTCCATGAGTCACGGCGGCCTTGTATGTCTCTAAGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTAT---CGATTGCCCAAAGAGATCAAGGCACAGAAGAAAAAACACCAGTCTCCTGAGAGAAGGAAGTCACTGTTCATTCATGAAAGTAACAGGGAGAAGAATGACAGAGATCGAGGCAAGAACAGTGAAGACTCCAGAAAACAGGCCACAGCCACAGAAGGTGACATCTTCAAGCATAGCTCCAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCATCCAGGAGAAAGCACACTGGGGGCTAGGTTCCAGCTGTCATTAGCTTCTTACTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATC---AACTCGGAAAATTCTTTCTCAGAAGCAAGCAACCTTTCCTTAAAGTCGTCTGGTGTAGGGAAAAACTGTAAGCCGAGGCATGAGCATAGCAAGCACACTGAGGCTGTACCTGGGAAGAGTAATCTCTCAACTCTG aggggatttatatgggcgatgtatatgttctcctcccccgccccctgcagACAAACATATGCTGGATTCACCTCAAAAATCAAACATCAACTACAGAGGAAATGGATTATCTATCACTGGGACAGAGCAATTTGAAAGAAAATTATCCTCACCAAAAAAACTTAAACCTAAGAGGATGTCATCAGAAGAAAGTCCTATTCTAGAGGCTTTCATGAAAGGTGGGAAGGAGCACCACAAGGATCGTGGTGTCCATGAGTCACGTCGCCCTTGTATGTTTCTGCGCAAATATTTACCCAAAGGAGCTGGCATCTATGCTCCTTCCTCTTATCGACGACTGCCTAAAGAGATTAAGGCACAGAAAAAAAAACACCAGTCTCCCAAGAGAAGGAAGTCACTGTTCATTCATGAAAGCAACAGAGAGAAGAATGACAGAGACCGGGGCAAAAACAGTGAAGATTCCAGAAAACAGGCCACAGCCACAGGAGGTGACATATTCAAGCATAGCTCTAGAAGTATTAGTAGCAGAAGCAGCCTGTCCAGGCACCACCCAGGAGAAAGCACACTGGGTGCAAGGTTC---CTGTCAATAGCTTCTTATTGCCGAGAGCGAGAACAGAAGAAGTTGAGAAAGGAACAAATGGAGCAGAGAATCATCAACTCAGAAAATTCATTCTCAGAAGCCAGCAACCTTTCCTTACGGTCATCTGGTGTAGGGAAAAACTGTAAGCCACGGCATCAACATAGCAAGCACACTGAGGCTGTACCTGGGCAGAGTAATCTCTCAACTCTGgtttgtgcagtaacttctgctgtaccatgcccaaacctaagtctacaaat #### Fam178a_ID9227_8 --> 1 - 2 Original Alignment gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttatgtgcctcccagctcttagatacatggtctcattttggtcataggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaagtgagtaaatcatcacaaatgtttgaatatttttccctgtttgttctatg Alignment from CESAR gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttatgtgcctcccagctcttagatacatggtctcattttggtcataggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaagtgagtaaatcatcacaaatgtttgaatatttttccctgtttgttctatg Alignment from Spaln_aa2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttatgtgcctcccagctcttagatacatggtctcattttggtcatagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgagtaaatcatcacaaatgtttgaatatttttccctgtttgttctatg Alignment from Spaln_nt2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttatgtgcctcccagctcttagatacatggtctcattttggtcatagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgagtaaatcatcacaaatgtttgaatatttttccctgtttgttctatg Alignment from Pairagon GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttatgtgcctcccagctcttagatacatggtctcattttggtcatagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgagtaaatcatcacaaatgtttgaatatttttccctgtttgttctatg Alignment from Exonerate_protein2genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttatgtgcctcccagctcttagatacatggtctcattttggtcatagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgagtaaatcatcacaaatgtttgaatatttttccctgtttgttctatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttatgtgcctcccagctcttagatacatggtctcattttggtcatagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAAgtgagtaaatcatcacaaatgtttgaatatttttccctgtttgttctatg #### Fam178a_ID9236_17 --> 0 - 0 Original Alignment GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtatgcatgctgccatcttcatgggtttaatatttgtttgattgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtaggtagtatttagtcttattgtaaattattcttgtcattgggatacag Alignment from CESAR GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtatgcatgctgccatcttcatgggtttaatatttgtttgattgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtaggtagtatttagtcttattgtaaattattcttgtcattgggatacag Alignment from Spaln_aa2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtatgcatgctgccatcttcatgggtttaatatttgtttgattgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtaggtagtatttagtcttattgtaaattattcttgtcattgggatacag Alignment from Spaln_nt2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtatgcatgctgccatcttcatgggtttaatatttgtttgattgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtaggtagtatttagtcttattgtaaattattcttgtcattgggatacag Alignment from Pairagon GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtatgcatgctgccatcttcatgggtttaatatttgtttgattgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtaggtagtatttagtcttattgtaaattattcttgtcattgggatacag Alignment from Exonerate_protein2genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtatgcatgctgccatcttcatgggtttaatatttgtttgattgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtaggtagtatttagtcttattgtaaattattcttgtcattgggatacag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtatgcatgctgccatcttcatgggtttaatatttgtttgattgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtaggtagtatttagtcttattgtaaattattcttgtcattgggatacag #### Fam189a2_ID5250_8 --> 0 - 1 Original Alignment GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAggtaggacacacctttcctataccaggccataggactagagaggtctatag Alignment from CESAR GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAggtaggacacacctttcctataccaggccataggactagagaggtctatag Alignment from Spaln_aa2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAGgtaggacacacctttcctataccaggccataggactagagaggtctatag Alignment from Spaln_nt2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAGgtaggacacacctttcctataccaggccataggactagagaggtctatag Alignment from Pairagon GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAGgtaggacacacctttcctataccaggccataggactagagaggtctatag Alignment from Exonerate_protein2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAGgtaggacacacctttcctataccaggccataggactagagaggtctatag Alignment from Exonerate_coding2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAGgtaggacacacctttcctataccaggccataggactagagaggtctatag Alignment from GeneWise GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agataaaaaaccaaaaacaatgacccccgctgtatacactttgtctccagGAATCCTCATTCCAAATGCCTGAAGGACCGGAAACCGCTGCGAGTCCAGCAGAGCCAGTTTGTACACAGATAACTCAAGgtaggacacacctttcctataccaggccataggactagagaggtctatag #### Fam189a2_ID5254_6 --> 0 - 2 Original Alignment GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCA---GTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCag gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTT---TCCTGCACACCTCGTATGAACCGCaggttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag Alignment from CESAR GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCA---GTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCag gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTT---TCCTGCACACCTCGTATGAACCGCaggttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag Alignment from Spaln_aa2Genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTTTCCTGCACACCTCGTATGAACCGCAGgttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag Alignment from Spaln_nt2Genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACC---AGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTTTC---CTGCACACCTCGTATGAACCGCAGgttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag Alignment from Pairagon GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACC---AGTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTT---TCCTGCACACCTCGTATGAACCGCAGgttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag Alignment from Exonerate_protein2genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCA---GTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTT---TCCTGCACACCTCGTATGAACCGCAGgttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag Alignment from Exonerate_coding2genome GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCA---GTGCCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTT---TCCTGCACACCTCGTATGAACCGCAGgttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag Alignment from GeneWise GATGAATCCCAGATGTCTGCAGAGGACGTGGAAGAACACGGTCGGATTCCAGACCCAGATGACTTTGTGCCACCAGTG---CCTCCTCCTTCTTACTTTGCCACATTTTACTCCTGCACACCTCGGATGAACCGCAG gcgtggtacctgtgatccattgcttttcatttgtgattatttatttacagGATGAGTCCAAGATGTCTGCTGAGGACGTGGAAGAACATGGTTGGATTCCAGACCCAGATGACTTTGTGCCACCAGTAGTGCCTACTCCTTCGTACTTTGCCACATTT---TCCTGCACACCTCGTATGAACCGCAGgttaacctcctaaatcacactgtggtctctgtggtatgcccagtcttgag #### Fam189a2_ID5257_4 --> 0 - 0 Original Alignment GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta Alignment from CESAR GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta Alignment from Spaln_aa2Genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta Alignment from Spaln_nt2Genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta Alignment from Pairagon GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta Alignment from Exonerate_protein2genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta Alignment from Exonerate_coding2genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta Alignment from GeneWise GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG tactgtgtgtaattctcctccttgagtaatactactttgcttacattcagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgagatggctagtttatagcctctatcacaattgctccccaaggaccta #### Fam189a2_ID5258_3 --> 0 - 0 Original Alignment GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta Alignment from CESAR GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta Alignment from Spaln_aa2Genome GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta Alignment from Spaln_nt2Genome GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta Alignment from Pairagon GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta Alignment from Exonerate_protein2genome GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta Alignment from Exonerate_coding2genome GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta Alignment from GeneWise GTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTCGCAGGCTTCATCCTAGGCTGTCAAGGAGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTGATCTG tcaagaccacacactcagcctccttgtagttttttttatttcttcttcagGTGAATCTCTTTGTGCTGCTCTCTGTGGTTTGCATCCTCCTAAATCTTGCAGGCTTCATTCTAGGCTGTCAAGGAGCCCAGTTTGTGTCTAGCGTGCCCAGGTGTGATCTGgtaaggtccctatagccatactgttgtcccctgagctcatggagtgagta #### Fam45a_ID13334_2 --> 2 - 0 Original Alignment aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagaaAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac Alignment from CESAR aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagaaAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac Alignment from Spaln_aa2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac Alignment from Spaln_nt2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac Alignment from Pairagon AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac Alignment from Exonerate_protein2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac Alignment from Exonerate_coding2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac Alignment from GeneWise AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG atcaatccactaccttattggttctggtcttctgtttttgtcttttgtagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACGTCAGCTTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACCTGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAGgtaagactgactcaagataaaaagaaaagacaaaataaaacaaacgagac #### Fam45a_ID13338_6 --> 1 - 1 Original Alignment gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcaggACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAggtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg Alignment from CESAR gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcaggACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAggtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg Alignment from Spaln_aa2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcagGACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg Alignment from Spaln_nt2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGAC------ ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcagGACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTgcattcttacatgcaccttcatgctgaagagctagaaggcctacagatgtgcacaggtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg Alignment from Pairagon GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcagGACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg Alignment from Exonerate_protein2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcagGACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg Alignment from Exonerate_coding2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcagGACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg Alignment from GeneWise GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctgcagaaccttaccaactagataactgcccccctctcttttaaatgcagGACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtgaggggaaatatccaggggaagaaatattctgcttatatagattggtg #### Fas_ID6921_2 --> 0 - 1 Original Alignment GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTg ttgcttggtgcagaaatcactaacatcccgagttttctgctttgccccagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTggtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca Alignment from CESAR GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTg ttgcttggtgcagaaatcactaacatcccgagttttctgctttgccccagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTggtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca Alignment from Spaln_aa2Genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG ttgcttggtgcagaaatcactaacatcccgagttttctgctttgccccagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca Alignment from Spaln_nt2Genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG ttgcttggtgcagaaatcactaacatcccgagttttctgctttgccccagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca Alignment from Pairagon GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG ttgcttggtgcagaaatcactaacatcccgagttttctgctttgccccagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca Alignment from Exonerate_protein2genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG ttgcttggtgcagaaatcactaacatcccgagttttctgctttgccccagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca Alignment from Exonerate_coding2genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG ttgcttggtgcagaaatcactaacatcccgagttttctgctttgccccagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca Alignment from GeneWise CTGTGGATCTGGGCTGTCCTGCCTCTGGTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG gcagaaatcactaacatcccgag---------TTTTCTGCTTTGCCCCAGGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCCGAGAGTTTAAAACTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGATTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtgagtcacaaaaataaatgtgacgagcagggtgtgagattgaggtgtca #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAggtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAggtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaaaagtttgtgtatatgtagaccaccctgtcttactctttgcagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTTGCAGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCCGACCACTCTGGAGGTAGCAGGCCGCATGCTTGGAGgtaagaggtgggaggttagttcagtgctttttttcagagctaagtgaata #### Fbxl15_ID9851_3 --> 0 - 2 Original Alignment GTG---GGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCag cagtggcctgccctggtgacagactcatagctctctaaattttttcttagGTAGTAGGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCaggtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca Alignment from CESAR GTG---GGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCag cagtggcctgccctggtgacagactcatagctctctaaattttttcttagGTAGTAGGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCaggtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca Alignment from Spaln_aa2Genome GTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG cagtggcctgccctggtgacagactcatagctctctaaattttttcttaggtagtagGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca Alignment from Spaln_nt2Genome GTGGGTCCACAGAT---TCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG cagtggcctgccctggtgacagactcatagctctctaaattttttcttagGTAGTAGGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca Alignment from Pairagon ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG cagtggcctgccctggtgacagactcatagctctctaaattttttcttagGTAGTAGGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca Alignment from Exonerate_protein2genome GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG cagtggcctgccctggtgacagactcatagctctctaaattttttcttaggtaGTAGGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca Alignment from Exonerate_coding2genome GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG cagtggcctgccctggtgacagactcatagctctctaaattttttcttaggtaGTAGGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca Alignment from GeneWise ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG cagtggcctgccctggtgacagactcatagctctctaaattttttcttagGTAGTAGGCCCACAGATTCCACGGGCGGCACTGGCCCGGCTACTGCGGGATGCTGAGGGACTTCAGGAGCTGGCGCTGGCTCCGTGTCACAAATGGCTGTCGGACGAAGACCTGGTGCCAGTGCTGGCACGGAATCCCCAGCTCCAGAGCGTAGCACTAGCCGGCTGCGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACACCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCAGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGACGAGGCGATTGTGTACCTGGCACAGAGACGGGGTGCAGGCCTCCGCAGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGGCTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtaacaggacatgggggctgtggtactatcagaagtgggtagtcatttca #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttaggGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttaggGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG gcaaaaaaagggatttctggtccaaagacatgaatccattttgttcttagGGATTATGCAGCCATTGTCTTTTTTGCCAATAACCACTTTGAAACTGGAAAGAAAAGGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtaacgaaattccgtaccccccttgggactggttacctactgtcagttca #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagg Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGaggtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagc Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagg Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagg Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagg Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagg Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagg Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG gcccaagatggtttatgcatatacaacaagtgtctgcttggccctttcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAGgtaagtgtggggtgcatgaggcataggatacaacacacttagtttatagg #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCcggtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCcggtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgctagtggtgccaactctccccaccccattttagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGCTTCCGgtaggcggtgctaagcatgctggctagcttccttggcctccatgagactc #### Fkbp2_ID1945_4 --> 2 - 1 Original Alignment ggTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAg gt agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagggTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAggtaagacccctgccaccctgacttcatcattgtttaattttcctccaggt Alignment from CESAR ggTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAg gt agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagggTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAggtaagacccctgccaccctgacttcagttttgctcttgtctctggcaggt Alignment from Spaln_aa2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcatcattgtttaattttcctccagGT Alignment from Spaln_nt2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcatcattgtttaattttcctccagGT Alignment from Pairagon GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcatcattgtttaattttcctccagGT Alignment from Exonerate_protein2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcatcattgtttaattttcctccagGT Alignment from Exonerate_coding2genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAG GT agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGgtaagacccctgccaccctgacttcatcattgtttaattttcctccagGT Alignment from GeneWise GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGGT------------------------------------------------ agaagagagcctggcccccacttaacttacttatgtgtccaatgatttagGGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGGTAAGACCCCTGCCACCCTGACTTCATCATTGTTTAATTTTCCTCCAGGT #### Fra10ac1_ID7560_9 --> 2 - 2 Original Alignment gaTTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACag gtataattatatggattcagtagctcagactgatccttgactattcacaggaTTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACaggtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc Alignment from CESAR gaTTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACag gtataattatatggattcagtagctcagactgatccttgactattcacaggaTTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACaggtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc Alignment from Spaln_aa2Genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG gtataattatatggattcagtagctcagactgatccttgactattcacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACAGgtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc Alignment from Spaln_nt2Genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG gtataattatatggattcagtagctcagactgatccttgactattcacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACAGgtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc Alignment from Pairagon GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG gtataattatatggattcagtagctcagactgatccttgactattcacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACAGgtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc Alignment from Exonerate_protein2genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG gtataattatatggattcagtagctcagactgatccttgactattcacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACAGgtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc Alignment from Exonerate_coding2genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG gtataattatatggattcagtagctcagactgatccttgactattcacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACAGgtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc Alignment from GeneWise GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG gtataattatatggattcagtagctcagactgatccttgactattcacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACAGgtgagcttttttgcataaagtatcatctttaatgtttggtaatttagttc #### Frmd8_ID1280_8 --> 0 - 0 Original Alignment CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg Alignment from CESAR CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg Alignment from Spaln_aa2Genome CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg Alignment from Spaln_nt2Genome CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg Alignment from Pairagon CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg Alignment from Exonerate_protein2genome CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg Alignment from Exonerate_coding2genome CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg Alignment from GeneWise CATGTGCTGCTGGGCCTGCGCTTTCAGGAGCTGTCGTGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAGTTCGATGGTGACAGTGAGGGCACGCCTGTCAACAAGCTGCTAAGGATCTACTCCAAGCAG cagcaaaaaaggcgagcaatcagctctggctgataccttgttctctacagCATGTGTTGCTAGGCCTGCGCTTTCAGGAGTTGTCATGGGATCACACTTCCCCTGAGGAGGAAGAGCCTGTCCTGTGGCTGGAATTTGATGGTGACAGTGAGGGCACACCTGTCAATAAGCTGCTAAGAATCTACTCCAAGCAGgtgtgtctgtgctcacacacacttggactgatggactgactgaggggctg #### Frmd8_ID1285_3 --> 2 - 1 Original Alignment agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGg tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagagGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT---------ATGggtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac Alignment from CESAR agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGg tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagagGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT---------ATGggtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac Alignment from Spaln_aa2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagAGGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT---------ATGGgtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac Alignment from Spaln_nt2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGT tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagAGGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT-ATGGgtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac Alignment from Pairagon AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagAGGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT---------ATGGgtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac Alignment from Exonerate_protein2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagAGGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT---------ATGGgtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac Alignment from Exonerate_coding2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagAGGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT---------ATGGgtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac Alignment from GeneWise AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatgacaatgtttgctgagcaggtgccttctcttgaacatgtgcagAGGTGCAATTGAAGCCAAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAT---------ATGGgtgagtgtctgggaccagggggctttaagggaggctttagaagggtagac #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggcttgggctgatgatcaggatgacatctctctattacttccacagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAGTTGCACAAACTGGCGACTGACAAGAATGACCCCCATgtaggtattgggaacatgggatgggtgaaggagatgatttgctaggacct #### Fxn_ID5299_2 --> 0 - 2 Original Alignment CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAaggtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc Alignment from CESAR CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAaggtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc Alignment from Spaln_aa2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAAGgtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc Alignment from Spaln_nt2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAAGgtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc Alignment from Pairagon CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAAGgtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc Alignment from Exonerate_protein2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAAGgtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc Alignment from Exonerate_coding2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAAGgtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc Alignment from GeneWise CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG ctggagcagaatgaggatgtggtaattataaccctcccggacctctgcagCATTTGAACCTCCATTACCTGCAGATCTTGAACATCAAAAAGCAGAGCGTCTGTGTGGTGCATTTGAGGAACTTGGGTACATTGGACAATCCAAGgtattgtgaaaccaccttctaccttaggcatgcatccacttcctctctcc #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga acgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaaggcCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaaggcCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA acgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA acgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Pairagon -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA ACGATTGGGCAAGACCAAAGAGAAGTGCCTGCTGTTCTGTTTACCGAAAGGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA acgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA acgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from GeneWise -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA ACGATTGGGCAAGACCAAAGAGAAGTGCCTGCTGTTCTGTTTACCGAAAGGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagaGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagaGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagAGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagAGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagAGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagAGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagAGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG agctatagcctagccattgtttagcctatttctgaccttttttgttacagAGGTGGTGAGCCATACCGCCTGTACAATTTGGATGTGTTTCAGTATGAGCTAAACAACCCCATGGCTCTGTATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCCTCCAACACAGCTGGGAAGgtaagaccatggcatgggagacacatgggaagactttgccatgccttcta #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAggtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAggtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCAC------ATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggacggccatggtagcctcaacaatttcttctttctctttgtaaaataagCTAGTGGCTATTGTGGACCCCCACATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAATTGCAAAACCATGGACTGTATGTTAAGACTCGGGATGGCTCTGATTATGAGGGCTGGTGCTGGCCAGgtttgtccagctggaggggaggctatgaagcagtcaaagaggcaaagata #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc #### Gbf1_ID9778_3 --> 2 - 1 Original Alignment aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagaaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAggtaagaacttaggctttgatggctctgcagcactccatctcctggggcac Alignment from CESAR aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagaaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAggtaagaacttaggctttgatggctctgcagcactccatctcctggggcac Alignment from Spaln_aa2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAGgtaagaacttaggctttgatggctctgcagcactccatctcctggggcac Alignment from Spaln_nt2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAGgtaagaacttaggctttgatggctctgcagcactccatctcctggggcac Alignment from Pairagon AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAGgtaagaacttaggctttgatggctctgcagcactccatctcctggggcac Alignment from Exonerate_protein2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAGgtaagaacttaggctttgatggctctgcagcactccatctcctggggcac Alignment from Exonerate_coding2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAGgtaagaacttaggctttgatggctctgcagcactccatctcctggggcac Alignment from GeneWise AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggtttacaagtttcctccaccctccgctgcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCATTCTGAAGACACCACTGGTCCTATCACTGGCCTGGCGCTTACCTCTGTCAACAAGTTCCTGTCCTACACACTCATAGgtaagaacttaggctttgatggctctgcagcactccatctcctggggcac #### Gbf1_ID9782_5 --> 0 - 1 Original Alignment GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTg cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTggtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa Alignment from CESAR GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTg cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTggtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa Alignment from Spaln_aa2Genome GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTGgtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa Alignment from Spaln_nt2Genome GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTGgtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa Alignment from Pairagon GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTGgtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa Alignment from Exonerate_protein2genome GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTGgtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa Alignment from Exonerate_coding2genome GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTGgtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa Alignment from GeneWise GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG cagctgtactcaccctgttttgttcaacctgacctgtccacattgcccagGTTCTCCGAACTCTGGTGCTAACCCCAGTGGGGACCCACTTAACAAATGAATCTGTGTGTGAGATTATGCAATCCTGCTTTCGCATTTGCTTTAAGATGAGACTCAGTGgtgagacctcgaattcaatgtttttcatcatcctggcatatatggggaaa #### Gbf1_ID9790_9 --> 2 - 0 Original Alignment gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttaggtGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa Alignment from CESAR gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttaggtGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa Alignment from Spaln_aa2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttagGTGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa Alignment from Spaln_nt2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttagGTGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa Alignment from Pairagon GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttagGTGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa Alignment from Exonerate_protein2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttagGTGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa Alignment from Exonerate_coding2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttagGTGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa Alignment from GeneWise GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG gtctgtttgcctggctctctgccatcaatccaccgggctctgggggttagGTGGTGTGCCCTTCATTGATGCACCAACATCCATCTCCTCTGCAAGTTCAGAAACTGCCTCGACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCCTCCCAGACTACCTCCAAGGAGGACCTCACAGACCTGGAACAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGTAGTGAGACAGGCACTTCTGACCAACTTGACCCTCAGgtatgtctgactcctgaagatgcctcttcagatctacaggtcactaggaa #### Gbf1_ID9792_11 --> 2 - 0 Original Alignment gcACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacaggcACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc Alignment from CESAR gcACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacaggcACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc Alignment from Spaln_aa2Genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacagGCACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc Alignment from Spaln_nt2Genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacagGCACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc Alignment from Pairagon GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacagGCACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc Alignment from Exonerate_protein2genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacagGCACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc Alignment from Exonerate_coding2genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacagGCACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc Alignment from GeneWise GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG cagactgaggtagtaccaaacagctgggcctctatcttcttttgctacagGCACAGCTCTGGTCCCTTATGGTCTCCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATTTCCCTCACAAACCCACATGACCAACATAACTCTGAGGTGATGATCCACATGGGCTTGCATTTATTGACAGTGGCTCTTGAGTCGGCACCTGTGACCCAGTGTCAGACCCTCTTGGGTCCCATTAAGGATGAGATGTGCCAACACTTATTCCAGgtaggtctagacttagctattttttgtggtcaagatgctagcagaattcc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg accgattgatttcctgcctataagtcatctattcattctttccctcacagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCagtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg accgattgatttcctgcctataagtcatctattcattctttccctcacagctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCagtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG accgattgatttcctgcctataagtcatctattcattctttccctcacagCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGAACATGGAAAGCCAGGGTGCAGAGACCTGGAGGAAGCGGGTGACTCTGGCAgtgatggcccagtgtcttgactctaactgaactcccagccccctcaacag #### Gbf1_ID9801_20 --> 0 - 2 Original Alignment GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaa gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaagttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat Alignment from CESAR GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaa gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaagttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat Alignment from Spaln_aa2Genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAAgttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat Alignment from Spaln_nt2Genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAAgttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat Alignment from Pairagon GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAAgttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat Alignment from Exonerate_protein2genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAAgttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat Alignment from Exonerate_coding2genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAAgttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat Alignment from GeneWise GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA gggtggtatacagccctgataccagggacttcctacctcatcccctacagGACTTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAGGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAAgttagttatctgtaaagtgaagtatccgtagagagtaacacagtacctat #### Gbf1_ID9804_23 --> 0 - 0 Original Alignment TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc Alignment from CESAR TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc Alignment from Spaln_aa2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc Alignment from Spaln_nt2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc Alignment from Pairagon TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc Alignment from Exonerate_protein2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc Alignment from Exonerate_coding2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc Alignment from GeneWise TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG ggcttttctttacagagcctaccctggctaagatatgtcttgtcttccagTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgtaagtcctaatagaatgttcagcattaaaaagtcacagcctgagctgtc #### Gbf1_ID9810_29 --> 0 - 1 Original Alignment GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGg gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAagtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca Alignment from CESAR GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGg gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAagtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca Alignment from Spaln_aa2Genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAAgtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca Alignment from Spaln_nt2Genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAAgtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca Alignment from Pairagon GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAAgtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca Alignment from Exonerate_protein2genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAAgtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca Alignment from Exonerate_coding2genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAAgtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca Alignment from GeneWise GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG gggataactgtatccctgtccacccactcagactcctctcctttctccagGTCCTGCTCTCTCTGCGCATCTTGTTGCTGATGAAGCCCAGTGTGCTGTCCAGAGTCAGCCACCAGGTTGCGTATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACATGGGTGATGACTGGGCAACTCTCTTCACATTGCTGGAGTGCATTGGCTCAGGTGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGACGCTCCTGATGCAAgtaaggccttccccaggaaaagcagtaagcacctggcggagctgctatca #### Gbf1_ID9814_33 --> 0 - 1 Original Alignment TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAg gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAggtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat Alignment from CESAR TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAg gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAggtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat Alignment from Spaln_aa2Genome TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGgtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat Alignment from Spaln_nt2Genome TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGgtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat Alignment from Pairagon TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGgtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat Alignment from Exonerate_protein2genome TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGgtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat Alignment from Exonerate_coding2genome TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGgtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat Alignment from GeneWise TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG gaccagctttgttctcatcctgcacaatcccttccccctcccactttcagTTACTAGACCTGATGCATACCCTGCACACACGCGCAGCCTCTATCTATAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGATTCACACACTCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGgtctgtcaatctggaggtgccttcaggggcaggtggaacacagaccacat #### Gda_ID4896_8 --> 0 - 0 Original Alignment AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg Alignment from CESAR AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg Alignment from Spaln_aa2Genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg Alignment from Spaln_nt2Genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg Alignment from Pairagon AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg Alignment from Exonerate_protein2genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg Alignment from Exonerate_coding2genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg Alignment from GeneWise AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatcaacataaacaaaaatattgtttttaactttttagAGCCATATAAGTAAAAATCGTGAAGAAATTGAAGCTGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTAACGAACAAGgtaagttctgaattgcaatataccctctgaaataagctacacaagctgtg #### Gda_ID4898_7 --> 0 - 0 Original Alignment TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg Alignment from CESAR TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg Alignment from Spaln_aa2Genome TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg Alignment from Spaln_nt2Genome TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg Alignment from Pairagon TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg Alignment from Exonerate_protein2genome TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg Alignment from Exonerate_coding2genome TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg Alignment from GeneWise TATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAG tttataatctactacttgttctccccacatctgtgattttatttatttagTATCTAAGGGTGAAACCCATAGTGACCCCAGGCTTCACCCTTTCCTGCATGGAAACTCTGATGAGTGAACTTGGTAACATTGCCAAGACTCATGATCTGTACATCCAGgtaagcgtttatctcaggtttgtgtgtgagacgaacacctgcttgtcttg #### Gda_ID4901_4 --> 0 - 1 Original Alignment AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGggtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag Alignment from CESAR AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGggtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag Alignment from Spaln_aa2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGGgtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag Alignment from Spaln_nt2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGGgtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag Alignment from Pairagon AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGGgtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag Alignment from Exonerate_protein2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGGgtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag Alignment from Exonerate_coding2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGGgtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag Alignment from GeneWise AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG actctgacctatggggggaactttgaaccttcccctcctcgtgactctagAGGAGAACACTTAAGAATGGCACCACCACAGCTTGCTACTTTGGGACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTATGGgtaagtagttaagaaccaagcaataacaactagaggatgcctagcaagag #### Gfra1_ID12603_5 --> 1 - 1 Original Alignment aTCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTg ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagaTCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTagtaagccaaggggagggagggaatggcaaaagaattctggattacggatc Alignment from CESAR aTCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTg ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagaTCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTagtaagccaaggggagggagggaatggcaaaagaattctggattacggatc Alignment from Spaln_aa2Genome ATCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTG ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagATCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTAgtaagccaaggggagggagggaatggcaaaagaattctggattacggatc Alignment from Spaln_nt2Genome ATCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTG ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagATCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTAgtaagccaaggggagggagggaatggcaaaagaattctggattacggatc Alignment from Pairagon ATCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTG ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagATCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTAgtaagccaaggggagggagggaatggcaaaagaattctggattacggatc Alignment from Exonerate_protein2genome ATCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTG ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagATCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTAgtaagccaaggggagggagggaatggcaaaagaattctggattacggatc Alignment from Exonerate_coding2genome ATCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTG ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagATCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTAgtaagccaaggggagggagggaatggcaaaagaattctggattacggatc Alignment from GeneWise ATCTCGCCTTGCAGATTTTTTTACCAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCGGGACTGATTG ggcctgaggggtttccagtaccctccttcttctccttcttgtctgcccagATCTCGCCTTGCAGATTTTTTTACAAACTGCCAGCCAGAGTCAAGGTCTGTCAGCAACTGTCTTAAGGAGAACTACGCAGACTGCCTCCTGGCCTACTCAGGACTGATTAgtaagccaaggggagggagggaatggcaaaagaattctggattacggatc #### Gfra1_ID12614_4 --> 2 - 2 Original Alignment tgGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGAC---AAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCag aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagttGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTaggtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga Alignment from CESAR tgGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGAC---AAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCag aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagttGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTaggtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga Alignment from Spaln_aa2Genome TGGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGAC---AAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCAG aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagTTGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTAGgtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga Alignment from Spaln_nt2Genome TGGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGA---CAAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCAG aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagTTGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTAGgtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga Alignment from Pairagon TGGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGA---CAAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCAG aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagTTGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTAGgtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga Alignment from Exonerate_protein2genome TGGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGAC---AAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCAG aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagTTGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTAGgtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga Alignment from Exonerate_coding2genome TGGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGAC---AAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCAG aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagTTGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTAGgtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga Alignment from GeneWise TGGAACACATTTCCAAAGGGAACAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGCAAGAAGTACAGGTCCGCCTACATCACCCCCTGTACCACCAGCATGTCCAATGAAGTCTGCAACCGCCGCAAGTGCCACAAAGCCCTCAGGCAGTTCTTCGAC---AAAGTTCCAGCCAAGCACAGCTACGGGATGCTCTTCTGCTCCTGCCGGGACGTCGCCTGCACCGAGAGGCGGCGACAGACTATCGTCCCTGTGTGCTCCTATGAAGAACGAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAGACAAATTACATCTGCAG aatacactcacacaagtgtgctgtgatcctgtgatggggtgacattacagTTGAACACATCTCCAAAGGGAATAACTGCCTCGATGCAGCCAAGGCCTGCAACCTGGATGACACCTGTAAGAAGTACAGGTCTGCCTACATCACGCCCTGTACCACCAGTATGTCCAATGAAGTCTGCAATCGTCGCAAGTGCCACAAAGCCCTCCGGCAGTTCTTTGACCGCAAAGTTCCAGCCAAGCACAGCTACGGGATGCTTTTCTGTTCCTGCCGGGATGTAGCTTGCACCGAGAGGCGGCGACAGACTATTGTCCCTGTGTGCTCATATGAAGAACAAGAGAGGCCCAACTGCCTGAATCTGCAAGACTCCTGCAAAACGAATTACATCTGTAGgtacctgcgcactcagcagttggtaaatgataccccatccccaggggaga #### Gfra1_ID12683_2 --> 2 - 1 Original Alignment atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagatTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtactgactacataaccccaccagcacactgtgcttcctagacaaccaga Alignment from CESAR atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagatTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtactgactacataaccccaccagcacactgtgcttcctagacaaccaga Alignment from Spaln_aa2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtactgactacataaccccaccagcacactgtgcttcctagacaaccaga Alignment from Spaln_nt2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtactgactacataaccccaccagcacactgtgcttcctagacaaccaga Alignment from Pairagon ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtactgactacataaccccaccagcacactgtgcttcctagacaaccaga Alignment from Exonerate_protein2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtactgactacataaccccaccagcacactgtgcttcctagacaaccaga Alignment from Exonerate_coding2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtactgactacataaccccaccagcacactgtgcttcctagacaaccaga Alignment from GeneWise ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gggtccccagtagtctgctgtattcaagaggtgttgtttggctaccgtagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTCGAGGCCAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtactgactacataaccccaccagcacactgtgcttcctagacaaccaga #### Gif_ID3282_6 --> 0 - 1 Original Alignment GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTg tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACC---AAGTGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTggtgaggacttcttagtgacctcccttcttacattataactgtgctactaa Alignment from CESAR GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTg tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACC---AAGTGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTggtgaggacttcttagtgacctcccttcttacattataactgtgctactaa Alignment from Spaln_aa2Genome GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTG tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACC---AAGTGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTGgtgaggacttcttagtgacctcccttcttacattataactgtgctactaa Alignment from Spaln_nt2Genome GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTG tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACC---AAGTGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTGgtgaggacttcttagtgacctcccttcttacattataactgtgctactaa Alignment from Pairagon GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTG tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACC---AAGTGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTGgtgaggacttcttagtgacctcccttcttacattataactgtgctactaa Alignment from Exonerate_protein2genome GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTG tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACC---AAGTGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTGgtgaggacttcttagtgacctcccttcttacattataactgtgctactaa Alignment from Exonerate_coding2genome GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTG tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACC---AAGTGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTGgtgaggacttcttagtgacctcccttcttacattataactgtgctactaa Alignment from GeneWise GCTCTCTCCGTGACACCTGAGCAACCTACCAAGAAGTGGGACTGTGAGAAGACTATGCATACAATACTCAACGAGATTAAGCAAGGGAAATTCCAAAACCCCATGTCCATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTG tatacgtatgatacatatatatctatcttgcattttatttttcttcacagGCTCTTTCTGTGACACCGGAGCAACCCACCAAG---TGGGACTGTGAGAAAACCATGCATACAATTCTCAATGAGATTAAGCAGGGGAAATTCCAAAACCACATGTCTATTGCCCAAATTCTCCCTTCCTTGAAAGGCAAGACTTACCTAGATGTGCCCCAAGTAACATGTGGTCCTGgtgaggacttcttagtgacctcccttcttacattataactgtgctactaa #### Gldc_ID6392_22 --> 2 - 1 Original Alignment ggTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATg gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagggTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATggtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat Alignment from CESAR ggTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATg gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagggTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATggtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat Alignment from Spaln_aa2Genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagGGTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat Alignment from Spaln_nt2Genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagGGTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat Alignment from Pairagon GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagGGTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat Alignment from Exonerate_protein2genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagGGTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat Alignment from Exonerate_coding2genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagGGTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat Alignment from GeneWise GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaaatgagacaatacaatccttatcttcaatctatgcctcccattctcagGGTATGTGGCTCATGAGTTTATCTTGGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtgagtcgtgctggacagtcacacagttgtgcctctaagctatgaaccat #### Gldc_ID6399_16 --> 1 - 0 Original Alignment cGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagtGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt Alignment from CESAR cGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagtGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt Alignment from Spaln_aa2Genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt Alignment from Spaln_nt2Genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt Alignment from Pairagon CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt Alignment from Exonerate_protein2genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt Alignment from Exonerate_coding2genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt Alignment from GeneWise CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA ggtaaagcttggaacccacaagactgactttctttttttttttttaatagTGGAGCACAGGGGGAGTATGCTGGACTGGCCACTATCAGAGCATACTTGGACCAAGAAGGAGAGAGACACAGAACAgtcagtgagcgtcagcagtattatttctgatattcccatcacactatagt #### Gldc_ID6400_15 --> 0 - 2 Original Alignment CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACaggtaagggactgcattgcatcctctatggttggcactctaaaattgatttt Alignment from CESAR CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACaggtaagggactgcattgcatcctctatggttggcactctaaaattgatttt Alignment from Spaln_aa2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACAGgtaagggactgcattgcatcctctatggttggcactctaaaattgatttt Alignment from Spaln_nt2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACAGgtaagggactgcattgcatcctctatggttggcactctaaaattgatttt Alignment from Pairagon CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACAGgtaagggactgcattgcatcctctatggttggcactctaaaattgatttt Alignment from Exonerate_protein2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACAGgtaagggactgcattgcatcctctatggttggcactctaaaattgatttt Alignment from Exonerate_coding2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACAGgtaagggactgcattgcatcctctatggttggcactctaaaattgatttt Alignment from GeneWise CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaacgagtcaaattcacacatgcttagcctgccactccacccctacagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTGGATCAAGCCCAGGGATACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGTGAGATCACAGGCTATGACCGAGTCTCATTCCAGTCGAACAGgtaagggactgcattgcatcctctatggttggcactctaaaattgatttt #### Gldc_ID6403_12 --> 0 - 2 Original Alignment GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATaggtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg Alignment from CESAR GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATaggtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg Alignment from Spaln_aa2Genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATAGgtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg Alignment from Spaln_nt2Genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATAGgtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg Alignment from Pairagon GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATAGgtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg Alignment from Exonerate_protein2genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATAGgtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg Alignment from Exonerate_coding2genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATAGgtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg Alignment from GeneWise GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG ttccagtgttatccctgtttccagcctcaatttttatatgttcctaatagGAATTAGTTTCTGAAGGCATGGGAGAGGAACAGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCATTCCTCACTCATCAGGTGTTCAATAGgtaaccttcagcaaattcagcattttgtgttctggtggtaggagtccctg #### Gldc_ID6404_11 --> 0 - 0 Original Alignment CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg Alignment from CESAR CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg Alignment from Spaln_aa2Genome CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg Alignment from Spaln_nt2Genome CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg Alignment from Pairagon CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg Alignment from Exonerate_protein2genome CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg Alignment from Exonerate_coding2genome CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg Alignment from GeneWise CTTGGCATTTCTTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTCGGCTGTGAGTCATCTGCA tggcctgaaatttgaagctgagaactttccaccctgtaccctgtctccagCTTGGCATTTCCTTGGATGAAACAGTCACTGAGAAAGATCTGGATGATTTACTGTGGATCTTTGGATGTGAATCATCTGTAgtactcaatctcatgttgctgtcttcatggtgactattagctatgtgttg #### Gldc_ID6405_10 --> 2 - 0 Original Alignment ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagggCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa Alignment from CESAR ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagggCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa Alignment from Spaln_aa2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagGGCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa Alignment from Spaln_nt2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagGGCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa Alignment from Pairagon GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagGGCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa Alignment from Exonerate_protein2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagGGCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa Alignment from Exonerate_coding2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagGGCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa Alignment from GeneWise GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ctggtgtgcagagtgctgtctgatatgaattctggcctctatgtctacagGGCTCAAGCGAGCTGGACACCAACTCCAGCACGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAAATCAATTTTCGACTCTTCGATGACGGCACAgtgaggcagacaatattagacatattcagttcatcatgtctcttttgaaa #### Gldc_ID6409_6 --> 1 - 0 Original Alignment aTATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagaTATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca Alignment from CESAR aTATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagaTATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca Alignment from Spaln_aa2Genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagATATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca Alignment from Spaln_nt2Genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagATATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca Alignment from Pairagon ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagATATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca Alignment from Exonerate_protein2genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagATATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca Alignment from Exonerate_coding2genome ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagATATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca Alignment from GeneWise ATATAGGGGGGTGCTTGTCGAGCTGAAGTTACCCCACGAAATGGATTTCAGTGGCAAAGACGTCTGTGGGGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAGGACTTCACAGAACTTGTAGACAGAGCCCATCAGACTGGG tggcgctacacaccatagtaaaaaggacgttattgatgattcctgcccagATATAGAGGTGTGCTTGTCGAGTTGAAGTTACCCCATGAAATGGATTTCAGTGGCAAAGATGTCTGTGGGGTACTGTTCCAGTACCCAGACACCGAGGGGAAGGTGGAGGACTTCACTGAACTTGTACACAGAGCCCATCAGACTGGGgtaagtaagccccctgctgaggttcaggatcctgtgtcccagttcccaca #### Gldc_ID6410_5 --> 1 - 2 Original Alignment aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagaCACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCaagtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from CESAR aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagaCACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCaagtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Spaln_aa2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCAAgtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Spaln_nt2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCAAgtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Pairagon ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCAAgtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Exonerate_protein2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCAAgtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from Exonerate_coding2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCAAgtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc Alignment from GeneWise ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gaagggaaaaaaaaatctttaagttcagatatcctttaaatttgtcttagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACAATAGCTGTTGTCCAGACTCGAGCCAAgtaagacgtgtaaattgtgttttgagccatgggtaatgttttatcatctc #### Gldc_ID6411_4 --> 1 - 2 Original Alignment gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtaggGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACaggtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct Alignment from CESAR gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtaggGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACaggtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct Alignment from Spaln_aa2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtagGGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACAGgtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct Alignment from Spaln_nt2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtagGGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACAGgtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct Alignment from Pairagon GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtagGGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACAGgtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct Alignment from Exonerate_protein2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtagGGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACAGgtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct Alignment from Exonerate_coding2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtagGGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACAGgtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct Alignment from GeneWise GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaatctcttcaggagaggcaagctttacttttctatgtctctgttgtagGGTCACCCAGTACACTCCATACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTGGACATGGCAAATGCTTCTCTACTGGATGAGGCAACCGCAGCTGCAGAGGCAATGCAACTGTGCCACAGgtaagtgtctatgtaggagcgcctgcccctctggaagacaggcatcccct #### Glis3_ID5980_2 --> 0 - 0 Original Alignment GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttagGATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt Alignment from CESAR GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttagGATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt Alignment from Spaln_aa2Genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttagGATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt Alignment from Spaln_nt2Genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttagGATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt Alignment from Pairagon GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttagGATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt Alignment from Exonerate_protein2genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttagGATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt Alignment from Exonerate_coding2genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttagGATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt Alignment from GeneWise GTATCCATGTCCACGGATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG gacatggtttctgccctcaaattagattttactttgcttttgttttttag---------------GATTTTATGGCCAGCTGTAGACATTCGGTCCCCCACATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCAGCTCCTGCAGTATGGTGCCTCCCTTTGAGGATTGCGTGGTCCCCACGTCCATGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCGTCACAGgttagtgactggcataaccaatgagataagcaaccaactgcttttcgtgt #### Glyat_ID3430_3 --> 0 - 1 Original Alignment GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAa cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAagtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca Alignment from CESAR GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAa cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAagtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca Alignment from Spaln_aa2Genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAAgtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca Alignment from Spaln_nt2Genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAAgtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca Alignment from Pairagon GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAAgtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca Alignment from Exonerate_protein2genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAAgtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca Alignment from Exonerate_coding2genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAAgtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca Alignment from GeneWise GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA cattaaatcataaacaatctgcaatgtctgcttacttttttctttgctagGAAATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCAAAAGACCCCCAAAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAAgtacagacaatggaaaatggtagctttccctactatgtcttgtctcccca #### Glyat_ID3431_4 --> 2 - 2 Original Alignment gtTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCat cacatctctccctatcatctcactatggttctttttcttttttcccctaggtTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCatgtcaggttgacaagacctgctagatccttctatccttctacatctctctc Alignment from CESAR gtTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCat cacatctctccctatcatctcactatggttctttttcttttttcccctaggtTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCatgtcaggttgacaagacctgctagatccttctatccttctacatctctctc Alignment from Spaln_aa2Genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacatctctccctatcatctcactatggttctttttcttttttcccctagGTTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtcaggttgacaagacctgctagatccttctatccttctacatctctctc Alignment from Spaln_nt2Genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacatctctccctatcatctcactatggttctttttcttttttcccctagGTTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtcaggttgacaagacctgctagatccttctatccttctacatctctctc Alignment from Pairagon GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacatctctccctatcatctcactatggttctttttcttttttcccctagGTTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtcaggttgacaagacctgctagatccttctatccttctacatctctctc Alignment from Exonerate_protein2genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacatctctccctatcatctcactatggttctttttcttttttcccctagGTTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtcaggttgacaagacctgctagatccttctatccttctacatctctctc Alignment from Exonerate_coding2genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacatctctccctatcatctcactatggttctttttcttttttcccctagGTTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtcaggttgacaagacctgctagatccttctatccttctacatctctctc Alignment from GeneWise GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacatctctccctatcatctcactatggttctttttcttttttcccctagGTTCCCAGTCCTACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtcaggttgacaagacctgctagatccttctatccttctacatctctctc #### Gm8369_ID3206_2 --> 0 - 0 Original Alignment TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc Alignment from CESAR TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc Alignment from Spaln_aa2Genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc Alignment from Spaln_nt2Genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc Alignment from Pairagon TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc Alignment from Exonerate_protein2genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc Alignment from Exonerate_coding2genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc Alignment from GeneWise TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG tataccaattggttaaagatatataaccttatggattccaacttgaaaagGTCATTGTCTCAGGATCCTTGTCAATCGCAGCAGAAGTGAAAACTACAAAAAGCTTGgtaagtaatttggttgcttctgctatcaaaagggagtaattgtataaatc #### Gna14_ID4044_3 --> 0 - 2 Original Alignment GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAAta tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCA------GAGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAAtagtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct Alignment from CESAR GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAAta tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCA------GAGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAAtagtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct Alignment from Spaln_aa2Genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCA------GAGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAATAgtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct Alignment from Spaln_nt2Genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAG------AGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAATAgtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct Alignment from Pairagon GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAG------AGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAATAgtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct Alignment from Exonerate_protein2genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCA------GAGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAATAgtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct Alignment from Exonerate_coding2genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCA------GAGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAATAgtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct Alignment from GeneWise GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA tctgtcatgcttttgtgtgctccatatgctctctctctctcatttttcagGAAAATGCCCAGATCATCAGGGAAGCGGAAGTAGAAAAGGTCACTGCACTCTCTAGAGACCAGGTGGCA------GAGCAGCTATGGCTGGATCCTGGAATCCAGGAGTGTTACGACAGGAGGAGAGAGTACCAGCTGTCAGACTCTGCCAAATAgtgggtacttcggtggctgcaggtaagatggctgcaggtaagcccactct #### Gnaq_ID4030_5 --> 1 - 0 Original Alignment aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat Alignment from CESAR aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat Alignment from Spaln_aa2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat Alignment from Spaln_nt2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat Alignment from Pairagon AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat Alignment from Exonerate_protein2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat Alignment from Exonerate_coding2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat Alignment from GeneWise AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tatattgccatttttgatttttttttaatatatacattctttttaatcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagaactccctggaacaatgattgagcactttattcctagataggaat #### Got1_ID8752_3 --> 0 - 1 Original Alignment GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGggtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt Alignment from CESAR GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGggtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt Alignment from Spaln_aa2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGGgtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt Alignment from Spaln_nt2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGGgtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt Alignment from Pairagon GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGGgtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt Alignment from Exonerate_protein2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGGgtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt Alignment from Exonerate_coding2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGGgtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt Alignment from GeneWise GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gccaatctcactattcacaacaaccagtctaattccagtcttgactccagGTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGTGCTCTTCGGATTGGATCTGATTTCTTAGGGCAATGGTACAATGGTACAGATAACAAGAACACATCAATCTACGTATCATCACCTACCTGGGgtgagtctgctagcctaagaggggctgtgccaagtatctggaagggcagt #### Got1_ID8753_2 --> 2 - 0 Original Alignment cgTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagcaTACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGgcacgattcgtggcacatggatagtttctcattaggggctgtaaatgtcg Alignment from CESAR cgTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagcaTACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGgcacgattcgtggcacatggatagtttctcattaggggctgtaaatgtcg Alignment from Spaln_aa2Genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagCATACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGgcacgattcgtggcacatggatagtttctcattaggggctgtaaatgtcg Alignment from Spaln_nt2Genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagCATACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGgcacgattcgtggcacatggatagtttctcattaggggctgtaaatgtcg Alignment from Pairagon CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagCATACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGgcacgattcgtggcacatggatagtttctcattaggggctgtaaatgtcg Alignment from Exonerate_protein2genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagCATACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGgcacgattcgtggcacatggatagtttctcattaggggctgtaaatgtcg Alignment from Exonerate_coding2genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagCATACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGgcacgattcgtggcacatggatagtttctcattaggggctgtaaatgtcg Alignment from GeneWise CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG--------- gctgccttgcaggctgcctgatagtatgcactaaattttttcttctccagCATACCGAACAGATGAATCTCAACCCTGGGTTTTGCCAGTTGTGAGGAAGCTTGAACAGAAGATTGCTAATGACAACAGTCTCAACCATGAATACCTGCCTATTCTGGGCCTGGCAGAGTTCCGGAGTTGTGCTTCTCGCCTAGTGCTTGGGGACAACAGCCTGGCTGTTAGAGAGAATCGGGCACGATTCgtggcacatggatagtttctcattaggggctgtaaatgtcg #### Gpam_ID11530_19 --> 2 - 0 Original Alignment ctGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagccGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg Alignment from CESAR ctGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagccGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg Alignment from Spaln_aa2Genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagCCGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg Alignment from Spaln_nt2Genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagCCGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg Alignment from Pairagon CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagCCGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg Alignment from Exonerate_protein2genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagCCGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg Alignment from Exonerate_coding2genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagCCGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg Alignment from GeneWise CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgaggccttttgtttatattttcagCCGAGAGTGCCACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATCGGGgtgagcgtctacaccttgctgccatcgttctgtgtggcattgttctgtgg #### Gpam_ID11531_18 --> 0 - 1 Original Alignment GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACg ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATggtaaggacggtttcattttagctaaccattttttggaaaactttccctca Alignment from CESAR GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACg ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATggtaaggacggtttcattttagctaaccattttttggaaaactttccctca Alignment from Spaln_aa2Genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATGgtaaggacggtttcattttagctaaccattttttggaaaactttccctca Alignment from Spaln_nt2Genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATGgtaaggacggtttcattttagctaaccattttttggaaaactttccctca Alignment from Pairagon GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATGgtaaggacggtttcattttagctaaccattttttggaaaactttccctca Alignment from Exonerate_protein2genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATGgtaaggacggtttcattttagctaaccattttttggaaaactttccctca Alignment from Exonerate_coding2genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATGgtaaggacggtttcattttagctaaccattttttggaaaactttccctca Alignment from GeneWise GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG ctgactcttctctgcccttctgttgacctctacccttttctcctccacagGTGAGCCAGTCCAAGGAGCATCAGCAATTCATCACCTCTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGTCATCTTTGTCCATAACTTCAGTGGGCCAGTTCCTGAATCTGAGTAC---CAGAAACTGCACAGGTACCTTATCACCAGGACAGAAAGGAATATTGCTGTGTATGgtaaggacggtttcattttagctaaccattttttggaaaactttccctca #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG ctttaagtcaatacatagcccagttctccttatctttgctcccgctgcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtaaggttcgaattcggactccttgggcataggtcctgtgtgccatcatt #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Pairagon AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagaataatgctacagtgagtctctggttttattgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGCCACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtagaggtctctaccctggaagaagcgtgtgaagattcagcctgcctcca #### Grk5_ID13410_5 --> 0 - 2 Original Alignment TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTca agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCAcagtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta Alignment from CESAR TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTca agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCAcagtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta Alignment from Spaln_aa2Genome TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTCA agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCACAgtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta Alignment from Spaln_nt2Genome TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTCA agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCACAgtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta Alignment from Pairagon TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTCA agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCACAgtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta Alignment from Exonerate_protein2genome TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTCA agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCACAgtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta Alignment from Exonerate_coding2genome TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTCA agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCACAgtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta Alignment from GeneWise TCCCCAGTCTTCATTGCCCAAGTTGGACAGGACCTGGTCTCCCAGACAGAGAAGAAGCTCCTGCAGAGCCCCTGCAAAGAACTCTTCTCTGCTTGTGCTCA agctattgtgtctcttcctgatgaagtatgtctgtctgtctgtctcacagTCCCCAGTCTTCATTGCTCAAGTTGGACAGGACCTGGTCTCTCAGACAGAGAGGAAGCTTCTACAGAGCCCTTGCAAGGAACTCTTCTCGGCTCGTGCACAgtaagggttctcccataatgtgttgcccacctgggcaggtgccccaacta #### Grk5_ID13413_7 --> 1 - 0 Original Alignment aCAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagaCAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca Alignment from CESAR aCAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagaCAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca Alignment from Spaln_aa2Genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagACAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca Alignment from Spaln_nt2Genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagACAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca Alignment from Pairagon ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagACAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca Alignment from Exonerate_protein2genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagACAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca Alignment from Exonerate_coding2genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagACAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca Alignment from GeneWise ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG ttaattcttaatttcaggagacaaatttctttctttcattcatttttaagACAACCAGTGACCAAAAACGCTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAGgtaagtgggcactgagggagtgggctttttgctagcttccccttgtaaca #### Grk5_ID13420_13 --> 0 - 0 Original Alignment CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga Alignment from CESAR CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga Alignment from Spaln_aa2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga Alignment from Spaln_nt2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga Alignment from Pairagon CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga Alignment from Exonerate_protein2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga Alignment from Exonerate_coding2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga Alignment from GeneWise CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT agaccttccttgtctcttttgatctttgctcacgcctctctctcccgcagGTGCTCACCAAAGACTCAGAGCAGAGGCTGGGCTGCCAGGAGGAGGGTGCTGCCGAGGTCAAGCGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagtaggcacccttgttccaagtcacctctccaagctgtgttttttga #### Grk5_ID13422_15 --> 0 - 0 Original Alignment ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc Alignment from CESAR ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc Alignment from Spaln_aa2Genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc Alignment from Spaln_nt2Genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc Alignment from Pairagon ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc Alignment from Exonerate_protein2genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc Alignment from Exonerate_coding2genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc Alignment from GeneWise ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaaggagaccctaaagtgggagcatgggattgtcaccttttccctgtagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTCGGACCTAATGGTACCCTTTCGCCAGACCTGAATAGAAGTCAGCCTCCAGAACCACCAAAGAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtgaggcagccaacatggccagaatggccttagctctggggctttaaccc #### Gsto1_ID10375_3 --> 1 - 0 Original Alignment gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctaggCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta Alignment from CESAR gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctaggCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta Alignment from Spaln_aa2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctagGCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta Alignment from Spaln_nt2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctagGCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta Alignment from Pairagon GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctagGCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta Alignment from Exonerate_protein2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctagGCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta Alignment from Exonerate_coding2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctagGCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta Alignment from GeneWise GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG ttattttgggagacagcactcatttactctatttacattttaccctctagGCATAAAGTAATCAATGTCAACCTGAAAAATAAGTCAGAGTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAGAACAGCCAGGGTCACTTGGTCACTGAATCTGCCATCACCTGTGAGTACCTAGATGAGGCCTACCCAGAAAAAAAGTTATTTCCAGATGATCCATATAAGAAGACACGTCAGAAGATGACTCTTGAATCATTCTCTAAGgtgagtttgaaaaaaactcatacctaaagtaaaaccctccttttgttcta #### Gucy2g_ID11572_19 --> 2 - 1 Original Alignment gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctaggtCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTAcgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct Alignment from CESAR gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctaggtCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTAcgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct Alignment from Spaln_aa2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTACgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct Alignment from Spaln_nt2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTACgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct Alignment from Pairagon GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTACgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct Alignment from Exonerate_protein2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTACgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct Alignment from Exonerate_coding2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTACgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct Alignment from GeneWise GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC cagcttttagcacaacaggcatttagagcaactgctcccctctcgcctagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACGATGGAAAGCAGCAGCTTACgtaaatattaattgtggctgcaggtgctattgcctgaccactgctcctct #### Gucy2g_ID11574_17 --> 1 - 0 Original Alignment cTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagtTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct Alignment from CESAR cTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagtTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct Alignment from Spaln_aa2Genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct Alignment from Spaln_nt2Genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct Alignment from Pairagon CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct Alignment from Exonerate_protein2genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct Alignment from Exonerate_coding2genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct Alignment from GeneWise CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG cacaggcacgagtttgggaagactcatcacttgtgcctctgtccttccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTCGGGTTCACAAAGCTGTGTTCCCTTAGTTCCCCTCTGCAAGTGGTTAAGCTGCTCAATGACCTGTACAGCTTGTTTGACCATACTATACAGAGCCATGATGTATACAAGgtaatttgagatgcctgggcggtgatgcacagaccccccatccattgtct #### Habp2_ID12064_10 --> 2 - 1 Original Alignment ctTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAg agagatgggaccccactcagttctctccatttttaaattgttactaatagctCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAggtgagtcttccacatgtactccatactcacaggagatctgcaccattcat Alignment from CESAR ctTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAg agagatgggaccccactcagttctctccatttttaaattgttactaatagctCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAggtgagtcttccacatgtactccatactcacaggagatctgcaccattcat Alignment from Spaln_aa2Genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG agagatgggaccccactcagttctctccatttttaaattgttactaatagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAGgtgagtcttccacatgtactccatactcacaggagatctgcaccattcat Alignment from Spaln_nt2Genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG agagatgggaccccactcagttctctccatttttaaattgttactaatagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAGgtgagtcttccacatgtactccatactcacaggagatctgcaccattcat Alignment from Pairagon CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG agagatgggaccccactcagttctctccatttttaaattgttactaatagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAGgtgagtcttccacatgtactccatactcacaggagatctgcaccattcat Alignment from Exonerate_protein2genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG agagatgggaccccactcagttctctccatttttaaattgttactaatagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAGgtgagtcttccacatgtactccatactcacaggagatctgcaccattcat Alignment from Exonerate_coding2genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG agagatgggaccccactcagttctctccatttttaaattgttactaatagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAGgtgagtcttccacatgtactccatactcacaggagatctgcaccattcat Alignment from GeneWise ---AAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG agagatgggaccccactcagttctctccatttttaaattgttactaatagctctactcaagTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTAAAGACTGTATGTTTGCCCAGTGACCCCATTCCCTCTGGTACAGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAGgtgagtcttccacatgtactccatactcacaggagatctgcaccattcat #### Hectd2_ID7142_2 --> 0 - 1 Original Alignment GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATg agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATggtgatcatgtgattaacctactcttcaattgcactttaattatttaccat Alignment from CESAR GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATg agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATggtgatcatgtgattaacctactcttcaattgcactttaattatttaccat Alignment from Spaln_aa2Genome GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATG agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATGgtgatcatgtgattaacctactcttcaattgcactttaattatttaccat Alignment from Spaln_nt2Genome GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATG agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATGgtgatcatgtgattaacctactcttcaattgcactttaattatttaccat Alignment from Pairagon GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATG agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATGgtgatcatgtgattaacctactcttcaattgcactttaattatttaccat Alignment from Exonerate_protein2genome GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATG agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATGgtgatcatgtgattaacctactcttcaattgcactttaattatttaccat Alignment from Exonerate_coding2genome GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATG agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATGgtgatcatgtgattaacctactcttcaattgcactttaattatttaccat Alignment from GeneWise GGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATG agtcagtattatttaaatacttagttacttatggttggatttttttgtagGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACTCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACTCACCTTGCTCTCTCTAATATCAGGAATGgtgatcatgtgattaacctactcttcaattgcactttaattatttaccat #### Hectd2_ID7151_9 --> 1 - 1 Original Alignment aTTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTa aaaataagaaataaaagtattgactggacctctccctcttgctcctccagaTTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGCG---CTTagtaatttttgataatttttggattcttctgtttctctgaagaaggagtag Alignment from CESAR aTTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTa aaaataagaaataaaagtattgactggacctctccctcttgctcctccagaTTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGCG---CTTagtaatttttgataatttttggattcttctgtttctctgaagaaggagtag Alignment from Spaln_aa2Genome ATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTA aaaataagaaataaaagtattgactggacctctccctcttgctcctccagATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGCGCTT---Agtaatttttgataatttttggattcttctgtttctctgaagaaggagtag Alignment from Spaln_nt2Genome ATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTA aaaataagaaataaaagtattgactggacctctccctcttgctcctccagATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGC---GCTTAgtaatttttgataatttttggattcttctgtttctctgaagaaggagtag Alignment from Pairagon ATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTA aaaataagaaataaaagtattgactggacctctccctcttgctcctccagATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGC---GCTTAgtaatttttgataatttttggattcttctgtttctctgaagaaggagtag Alignment from Exonerate_protein2genome ATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCT aaaataagaaataaaagtattgactggacctctccctcttgctcctccagATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGCGcttagtaatttttgataatttttggattcttctgtttctctgaagaaggagtag Alignment from Exonerate_coding2genome ATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCT aaaataagaaataaaagtattgactggacctctccctcttgctcctccagATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGCGcttagtaatttttgataatttttggattcttctgtttctctgaagaaggagtag Alignment from GeneWise ATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTA aaaataagaaataaaagtattgactggacctctccctcttgctcctccagATTATCCCAGAAGAAATTCAAGCAACTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTTCCACCTCTAACGAAGTGTGCCTGGTGGATCCCATCAGCTGCTAAAATTCTGGCG---CTTAgtaatttttgataatttttggattcttctgtttctctgaagaaggagtag #### Hectd2_ID7152_10 --> 2 - 2 Original Alignment acACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACag aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagacACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACaggtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc Alignment from CESAR acACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACag aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagacACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACaggtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc Alignment from Spaln_aa2Genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagACACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACAGgtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc Alignment from Spaln_nt2Genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagACACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACAGgtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc Alignment from Pairagon ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagACACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACAGgtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc Alignment from Exonerate_protein2genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagACACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACAGgtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc Alignment from Exonerate_coding2genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagACACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACAGgtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc Alignment from GeneWise ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG aaaaaatcatgtgtgtggtgggagcaccccttgcaactctgccctttcagACACTGCCAACAATTTGGTTCACCCTCCACTTGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCGCATTGATCTCATGGAAGAGTATCACACATGGCAGAGCTTTGGGAACTCTCACAGgtagggccaatggccaatacaactgtccacctgacaggtgcaattaatgc #### Hells_ID7695_2 --> 0 - 0 Original Alignment GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta Alignment from CESAR GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta Alignment from Spaln_aa2Genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta Alignment from Spaln_nt2Genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta Alignment from Pairagon GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta Alignment from Exonerate_protein2genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta Alignment from Exonerate_coding2genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta Alignment from GeneWise GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG tgaatatccacagctcttttattttagattttttaacccttttcatgcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGATTGCAGCATTTGCTTGAAAAAAGCAATATATACTCAAAATTTTTGTTGACCAAAATGGAACAACAGCAATTGGAGgtgcgtctgtctgtttaacagcagcaattggaggtatgtctgtttgatta #### Hells_ID7703_10 --> 0 - 2 Original Alignment CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAag gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAaggtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta Alignment from CESAR CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAag gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAaggtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta Alignment from Spaln_aa2Genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta Alignment from Spaln_nt2Genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta Alignment from Pairagon CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta Alignment from Exonerate_protein2genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta Alignment from Exonerate_coding2genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta Alignment from GeneWise CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG gaattatgagattgattcttacaatcctgtttttcccgtttccaacccagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAACGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtatgttttatgtcttcttagaacctcaaaaaaagcagtgttctaagtta #### Hells_ID7708_15 --> 0 - 0 Original Alignment ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag Alignment from CESAR ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag Alignment from Spaln_aa2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag Alignment from Spaln_nt2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag Alignment from Pairagon ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag Alignment from Exonerate_protein2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag Alignment from Exonerate_coding2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag Alignment from GeneWise ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tgattagaaattatattaacattttcttataacggcctctctatctccagATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTCGGATCGAATGTTGCCTGAACTTAAAAAAAGAGGTCACAAGgttggcctgactagaatttgagatctttagcttcgtatggatcagtatag #### Hif1an_ID9068_6 --> 1 - 0 Original Alignment gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtaggTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca Alignment from CESAR gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtaggTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca Alignment from Spaln_aa2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca Alignment from Spaln_nt2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca Alignment from Pairagon GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca Alignment from Exonerate_protein2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca Alignment from Exonerate_coding2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca Alignment from GeneWise GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatcttcatctctccctccaactatctgttttgattctatttgtagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaagcattagtgattgtttttgttttttgtcatgattgatatgtccaca #### Hnrnpul2_ID2406_10 --> 0 - 1 Original Alignment TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAg tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAggtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt Alignment from CESAR TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAg tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAggtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt Alignment from Spaln_aa2Genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt Alignment from Spaln_nt2Genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt Alignment from Pairagon TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt Alignment from Exonerate_protein2genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt Alignment from Exonerate_coding2genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt Alignment from GeneWise TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG tttgtttaatgagttgttaacttaaaaccccttccccacttttttgacagTGTAATGTGTACAACTCGGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtaagctggaatagagagaatccactccatgctttgtgtaaccttgcttt #### Hoga1_ID8381_4 --> 0 - 0 Original Alignment GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa Alignment from CESAR GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa Alignment from Spaln_aa2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa Alignment from Spaln_nt2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa Alignment from Pairagon GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa Alignment from Exonerate_protein2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa Alignment from Exonerate_coding2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa Alignment from GeneWise GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT gcctgcagtcagaccaagacttgcttccgggtgcttacctggtgttgcagATTGCTGACGTTTCTCCAATCCCTGTGGTATTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAGCACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtgagtagctgcagcacccagattgctcagcttggtagcacgtagcccaa #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGggtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga Alignment from CESAR GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGggtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGGgtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGGgtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga Alignment from Pairagon GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGGgtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGGgtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGGgtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga Alignment from GeneWise GTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG ccaggctggtggttctgggctcggacctggtgaaattttttttctttaagGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTTCTGGCTAGCTATTCTGTGGgtaagtttcctgccgtttttgaaccgccctgtccaatcaagttgcacaga #### Hoga1_ID8383_6 --> 2 - 0 Original Alignment gaGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacaggaGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc Alignment from CESAR gaGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacaggaGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc Alignment from Spaln_aa2Genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacagGAGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc Alignment from Spaln_nt2Genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacagGAGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc Alignment from Pairagon GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacagGAGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc Alignment from Exonerate_protein2genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacagGAGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc Alignment from Exonerate_coding2genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacagGAGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc Alignment from GeneWise GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG ttgtagcaagtagtcatccctgatgtatagtcccactctcctatttacagGAGCTGTTGGTGGCATAAGTGGGTTGGCAAATGTCTTGGGGGCTCAGGTGTGTCAGCTGGAGAGACTCTGTCTCACAGGGCAGTGGGAAGCTGCCCAGGAATTGCAGCGCCGTCTCATTGAGCCCAACACCGCGgtaagttccccatgggccctactgacaagggggtcctgttcaatgtctcc #### Hps1_ID8612_16 --> 0 - 0 Original Alignment GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc Alignment from CESAR GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc Alignment from Spaln_aa2Genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc Alignment from Spaln_nt2Genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc Alignment from Pairagon GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc Alignment from Exonerate_protein2genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc Alignment from Exonerate_coding2genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc Alignment from GeneWise GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tacagaggtggcactcctgagagtaattccctgactttccttgtccccagGTCTGGGCTCTGGTCCGACTGGCACGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtacgagtgctcggtctctgggctagctaagggtgctcctgagagctatc #### Hps1_ID8616_12 --> 0 - 2 Original Alignment AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGgagtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt Alignment from CESAR AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGgagtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt Alignment from Spaln_aa2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGGAgtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt Alignment from Spaln_nt2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGGAgtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt Alignment from Pairagon AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGGAgtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt Alignment from Exonerate_protein2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGGAgtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt Alignment from Exonerate_coding2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGGAgtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt Alignment from GeneWise AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctctgtggagaacaacccgatacagtcataaccctgcttttccttccagAACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAAAGGTGAGCCAGGATCATCCTGGGAgtacctggctgtacttggggcaaaggggagatgttcattcatgaacagtt #### Hpse2_ID8673_7 --> 1 - 0 Original Alignment tTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagtTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag Alignment from CESAR tTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagtTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag Alignment from Spaln_aa2Genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagTTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag Alignment from Spaln_nt2Genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagTTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag Alignment from Pairagon TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagTTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag Alignment from Exonerate_protein2genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagTTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag Alignment from Exonerate_coding2genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagTTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag Alignment from GeneWise TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aggattgtatgttcaggattgtactgactgacttgcgtttatccctgcagTTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCTGACCAGATCAGGAAAATTCAGAAAgtaagtataatttcctgcaaggtggtgtgtttaggtacaaagacaaggag #### Hpse2_ID8681_4 --> 2 - 1 Original Alignment ccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATg ccttttgttcagttttgcaggttataagttgtggaatggcttctttctagccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATggtaagtaagagattatatcccgcacttgggccagagggtcctacacccat Alignment from CESAR ccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATg ccttttgttcagttttgcaggttataagttgtggaatggcttctttctagccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATggtaagtaagagattatatcccgcacttgggccagagggtcctacacccat Alignment from Spaln_aa2Genome CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttttgttcagttttgcaggttataagttgtggaatggcttctttctagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaagtaagagattatatcccgcacttgggccagagggtcctacacccat Alignment from Spaln_nt2Genome CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttttgttcagttttgcaggttataagttgtggaatggcttctttctagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaagtaagagattatatcccgcacttgggccagagggtcctacacccat Alignment from Pairagon CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttttgttcagttttgcaggttataagttgtggaatggcttctttctagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaagtaagagattatatcccgcacttgggccagagggtcctacacccat Alignment from Exonerate_protein2genome AACCTCATATTAACAGCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttttgttcagttttgcaggttataagttgtggAATGGCTTCTTTCTAGCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaagtaagagattatatcccgcacttgggccagagggtcctacacccat Alignment from Exonerate_coding2genome AACCTCATATTAACAGCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttttgttcagttttgcaggttataagttgtggAATGGCTTCTTTCTAGCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaagtaagagattatatcccgcacttgggccagagggtcctacacccat Alignment from GeneWise CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttttgttcagttttgcaggttataagttgtggaatggcttctttctagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaagtaagagattatatcccgcacttgggccagagggtcctacacccat #### Hrasls5_ID2197_3 --> 1 - 0 Original Alignment aGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagaGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc Alignment from CESAR aGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagaGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc Alignment from Spaln_aa2Genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc Alignment from Spaln_nt2Genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc Alignment from Pairagon AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc Alignment from Exonerate_protein2genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc Alignment from Exonerate_coding2genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc Alignment from GeneWise AAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagtccactctgctccacccggcagagagAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGGACAGAGTTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtcagtatgggatccatgggatgagttttttagtttgttggtcattcctc #### Hrasls5_ID2199_5 --> 2 - 0 Original Alignment gtGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactaggtGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg Alignment from CESAR gtGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactaggtGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg Alignment from Spaln_aa2Genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactagGTGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg Alignment from Spaln_nt2Genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactagGTGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg Alignment from Pairagon GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactagGTGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg Alignment from Exonerate_protein2genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactagGTGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg Alignment from Exonerate_coding2genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactagGTGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg Alignment from GeneWise GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGTGTGCCCAGGAGCCAGCAG gtaccctcctttactctttgtacatttcgacccagtttgttttcaactagGTGAGTTTGAGGCAGGGAGCATCACCTCAATTTTCAGCAACCGGGCTGTGGTGAAGTATAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCCTGGAAGATTAATAACAAGCTTGATGGTACATATCTGCCACTGCCAGTAGACAAGATCATGCAACGCACAGAAAACATGATAAACAAGATAGTACAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGATCTCAGATATGGTGTGCCCAGGAGCCAGCAGgtgagaccttgagtgccttcagtggctcctcaccgtctgatggtgtaatg #### Hspa12a_ID12809_6 --> 0 - 0 Original Alignment GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctatgctgccttgcttctcccgcagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGGTAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAGCAATTCATGAGAGAAGCAGCCTACCAAgtaagagacattgggatggtgattgtaaggaggggcagagggctggagct Alignment from CESAR GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctatgctgccttgcttctcccgcagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGGTAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAGCAATTCATGAGAGAAGCAGCCTACCAAgtaagagacattgggatggtgattgtaaggaggggcagagggctggagct Alignment from Spaln_aa2Genome GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctatgctgccttgcttctcccgcagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGGTAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAGCAATTCATGAGAGAAGCAGCCTACCAAgtaagagacattgggatggtgattgtaaggaggggcagagggctggagct Alignment from Spaln_nt2Genome GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctatgctgccttgcttctcccgcagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGGTAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAGCAATTCATGAGAGAAGCAGCCTACCAAgtaagagacattgggatggtgattgtaaggaggggcagagggctggagct Alignment from Pairagon GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctatgctgccttgcttctcccgcagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGGTAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAGCAATTCATGAGAGAAGCAGCCTACCAAgtaagagacattgggatggtgattgtaaggaggggcagagggctggagct Alignment from Exonerate_protein2genome GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctatgctgccttgcttctcccgcagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGGTAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAGCAATTCATGAGAGAAGCAGCCTACCAAgtaagagacattgggatggtgattgtaaggaggggcagagggctggagct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctatgctgccttgcttctcccgcagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGGTAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAGCAATTCATGAGAGAAGCAGCCTACCAAgtaagagacattgggatggtgattgtaaggaggggcagagggctggagct #### Hspa12a_ID12810_5 --> 0 - 0 Original Alignment GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG aaccaagggcatgatcccttgtaattaatccctgccctcttgtgccctagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTAAAGgtaggccctaagagcagtcagcccattagcccgactttgggttcttggcg Alignment from CESAR GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG aaccaagggcatgatcccttgtaattaatccctgccctcttgtgccctagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTAAAGgtaggccctaagagcagtcagcccattagcccgactttgggttcttggcg Alignment from Spaln_aa2Genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG aaccaagggcatgatcccttgtaattaatccctgccctcttgtgccctagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTAAAGgtaggccctaagagcagtcagcccattagcccgactttgggttcttggcg Alignment from Spaln_nt2Genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG aaccaagggcatgatcccttgtaattaatccctgccctcttgtgccctagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTAAAGgtaggccctaagagcagtcagcccattagcccgactttgggttcttggcg Alignment from Pairagon GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG aaccaagggcatgatcccttgtaattaatccctgccctcttgtgccctagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTAAAGgtaggccctaagagcagtcagcccattagcccgactttgggttcttggcg Alignment from Exonerate_protein2genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG aaccaagggcatgatcccttgtaattaatccctgccctcttgtgccctagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTAAAGgtaggccctaagagcagtcagcccattagcccgactttgggttcttggcg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG aaccaagggcatgatcccttgtaattaatccctgccctcttgtgccctagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTAAAGgtaggccctaagagcagtcagcccattagcccgactttgggttcttggcg #### Hspa12a_ID12813_2 --> 2 - 0 Original Alignment aaACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG gggctggcctgcatctctcttaagaggctgaagttttgcattttttacagaaACAGCCCCCACATCTACATATTCTTCTCCAGCCAGGAGTCTTGGGGACACAGGAATAACACCTCTGTCCCCGTCCCATATCTTGgtctgtaatgtgagtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgt Alignment from CESAR aaACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG gggctggcctgcatctctcttaagaggctgaagttttgcattttttacagaaACAGCCCCCACATCTACATATTCTTCTCCAGCCAGGAGTCTTGGGGACACAGGAATAACACCTCTGTCCCCGTCCCATATCTTGgtctgtaatgtgagtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgt Alignment from Spaln_aa2Genome AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG gggctggcctgcatctctcttaagaggctgaagttttgcattttttacagAAACAGCCCCCACATCTACATATTCTTCTCCAGCCAGGAGTCTTGGGGACACAGGAATAACACCTCTGTCCCCGTCCCATATCTTGgtctgtaatgtgagtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgt Alignment from Spaln_nt2Genome AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG gggctggcctgcatctctcttaagaggctgaagttttgcattttttacagAAACAGCCCCCACATCTACATATTCTTCTCCAGCCAGGAGTCTTGGGGACACAGGAATAACACCTCTGTCCCCGTCCCATATCTTGgtctgtaatgtgagtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgt Alignment from Pairagon AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG gggctggcctgcatctctcttaagaggctgaagttttgcattttttacagAAACAGCCCCCACATCTACATATTCTTCTCCAGCCAGGAGTCTTGGGGACACAGGAATAACACCTCTGTCCCCGTCCCATATCTTGgtctgtaatgtgagtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgt Alignment from Exonerate_protein2genome AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG gggctggcctgcatctctcttaagaggctgaagttttgcattttttacagAAACAGCCCCCACATCTACATATTCTTCTCCAGCCAGGAGTCTTGGGGACACAGGAATAACACCTCTGTCCCCGTCCCATATCTTGgtctgtaatgtgagtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAACAGCCCCCACATCTACATATTCCTCTCCGGCCAGGAGTCTCGGGGACACAGGAATAACACCTCTGTCCCCTTCCCATATCTTG gggctggcctgcatctctcttaagaggctgaagttttgcattttttacagAAACAGCCCCCACATCTACATATTCTTCTCCAGCCAGGAGTCTTGGGGACACAGGAATAACACCTCTGTCCCCGTCCCATATCTTGgtctgtaatgtgagtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgt #### Htr7_ID7073_2 --> 1 - 2 Original Alignment gTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGT---AGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGct tgctcctctgattaatagattttagaagtacatgtctactttgtttgcaggTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCAT---TATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGT---TGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGctgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac Alignment from CESAR gTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGT---AGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGct tgctcctctgattaatagattttagaagtacatgtctactttgtttgcaggTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCAT---TATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGT---TGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGctgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac Alignment from Spaln_aa2Genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT tgctcctctgattaatagattttagaagtacatgtctactttgtttgcagGTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCAT---TATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGTTGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGCTgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac Alignment from Spaln_nt2Genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATC---GTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT tgctcctctgattaatagattttagaagtacatgtctactttgtttgcagGTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCA---TTATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGT---TGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGCTgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac Alignment from Pairagon GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATC---GTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT tgctcctctgattaatagattttagaagtacatgtctactttgtttgcagGTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCA---TTATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGT---TGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGCTgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac Alignment from Exonerate_protein2genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGT---AGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT tgctcctctgattaatagattttagaagtacatgtctactttgtttgcagGTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCAT---TATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGT---TGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGCTgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac Alignment from Exonerate_coding2genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGT---AGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT tgctcctctgattaatagattttagaagtacatgtctactttgtttgcagGTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCAT---TATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGT---TGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGCTgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac Alignment from GeneWise GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGC---CTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT tgctcctctgattaatagattttagaagtacatgtctactttgtttgcagGTACCTTGGGATCACCAGGCCCCTTATGTACCCTGTGAGGCAGAACGGGAAATGTATGGCCAGAATGATCCTTTCAGTCTGGCTTCTCTCTGTCACAATCACCCTACCTCCTCTCTTTGGATGGGCTCAGAACGTCAACGATGACAAAGTGTGTTTGATCAGCCAAGATTTTGGATACACAATCTACTCCACTGCGCTGGCATTTTATATCCCAATGTTGGTCATGTTGTTTATGTACTATCAT---TATAAGGCAGCCAGGAAGAGTGCAGCCAAACATGAGTTCTCAGGGTTCCCACATGCACAGCCAGAAAGCATCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTAGAAGAGTGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGGAAGAACATTTCCATCTTTAAGAGGCAACAGAAGGCAGCTACTACCTTGGGCATCATCATAGGAGCATTCACAGTGTGCTGGCTGCCGTTCTTCTTCCTCTCCACAGCACGGCCCTTTATCTGTGGCACCTCCTGT---TGTATCCCTCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCAGGACTTGAGGACTACCTATCACAGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGACACTCTCTGCTGCGGGCATGCATGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAAAAGTGAGTTTGTGCTgtaagctcattcatcactccatccatttaccccctttcctctttcgtgac #### Ighmbp2_ID11_6 --> 0 - 0 Original Alignment GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta Alignment from CESAR GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta Alignment from Spaln_aa2Genome GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta Alignment from Spaln_nt2Genome GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta Alignment from Pairagon GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta Alignment from Exonerate_protein2genome GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta Alignment from Exonerate_coding2genome GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta Alignment from GeneWise GTCCTGTGCTGTGCTCCCTCCAACATCGCTGTGGACAACCTGGTGGAGCGTCTGGCTCTGTGCAAGAAGCGGATTCTGCGCCTGGGTCACCCCGCCCGCCTCCTGGAGTCCGTTCAGCACCACTCACTGGATGCAGTGCTAGCACGCAGTGACAACGCCCAGATTGTTGCTGACATCAGAAGGGACATAGACCAGGTCTTT aggttaactcaaggagaagttgctagaagtctcgcttgctgtccctgcagGTCTTGTGCTGTGCTCCCTCTAATATCGCTGTTGACAACCTAGTGGAACGTCTGGCTCTGTGCAAGGAGCGGATTCTGTGTCTGGGTCACCCCGCCCGACTCCTGGAGCCTGTTCAGCACCACTCACTGGATGCAGTGCTGGCACGCAGTGACAATGCCCAGATTGTTGCCGAAATCAGAAGGGACATAGACCAGGTCTTTgtttgtagcattgagtcggtaccggcatgcatgaacctgtctgagctcta #### Ighmbp2_ID14_3 --> 2 - 2 Original Alignment gtGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAaa aagtatgctggaaacaatcacattacatttttatctcttctttattccaggtGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAaagtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg Alignment from CESAR gtGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAaa aagtatgctggaaacaatcacattacatttttatctcttctttattccaggtGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAaagtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg Alignment from Spaln_aa2Genome GTGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAAA aagtatgctggaaacaatcacattacatttttatctcttctttattccagGTGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAAAgtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg Alignment from Spaln_nt2Genome GTGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAAA aagtatgctggaaacaatcacattacatttttatctcttctttattccagGTGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAAAgtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg Alignment from Pairagon GTGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAAA aagtatgctggaaacaatcacattacatttttatctcttctttattccagGTGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAAAgtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg Alignment from Exonerate_protein2genome GTGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAAA aagtatgctggaaacaatcacattacatttttatctcttctttattccagGTGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAAAgtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg Alignment from Exonerate_coding2genome GTGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAAA aagtatgctggaaacaatcacattacatttttatctcttctttattccagGTGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAAAgtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg Alignment from GeneWise GTGATATTGTGGGTCTGTATGATACTAATGAAAACAGTCAACTGGCCACTGGGGTCCTGACCCGAATCACCCAAAAATCAGTCACAGTGGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAATACCTACAGACTGCTGAAGCTTGCCAACGATGTCACCTACAAACGCCTGAAAAA aagtatgctggaaacaatcacattacatttttatctcttctttattccagGTGATATTGTGGGTCTGTATGATTCTAATGAAAACAGTCAACTAGCCACTGGGGTCCTGACCCGGATCACCCAAAAATCAGTCACAGTCGCTTTTGATGAGTCCCATGATCTCCAGCTGAACCTGGACAGAGAGAACACCTACAGACTCCTGAAACTTGCTAATGATGTCACCTACAAACGC---AAAAAgtaagtgtgcccgactggatctaatgggtcactttcttggatgggactcg #### Il33_ID6363_6 --> 2 - 0 Original Alignment gcGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccaggcGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac Alignment from CESAR gcGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccaggcGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac Alignment from Spaln_aa2Genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccagGCGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac Alignment from Spaln_nt2Genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccagGCGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac Alignment from Pairagon GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccagGCGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac Alignment from Exonerate_protein2genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccagGCGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac Alignment from Exonerate_coding2genome GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccagGCGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac Alignment from GeneWise GCGACGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACTCCGTGGAG tgccctaaatatatgtattcaccctgtaatccttttctcttgtttcccagGCGATGGTGTGGATGGGAAGAAGCTGATGGTGAACATGAGTCCCATCAAAGACACAGACATCTGGCTGCATGCCAACGACAAGGACTACCCCGTGGAGgtaggcgaaatatgaccctatgacagccacaattggttctacccattaac #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccaggGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcccgactactggcttgacagggcttacgtctgctcccctcctccccagGGAGATGCAGGAGAGAGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGGAAGgtaactggtttgcgaaaatgtgctccaggtgggatctgtgttaacctgag #### Incenp_ID2606_13 --> 0 - 2 Original Alignment GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGag ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGAAGGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGGGAGCAGGAGCAGGAGCGCCTTCGGGCCAAGaggttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca Alignment from CESAR GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGag ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGAAGGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGGGAGCAGGAGCAGGAGCGCCTTCGGGCCAAGaggttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca Alignment from Spaln_aa2Genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGA GCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAgcaagagaggcgaagggagcaggagcggcgggagcaggagcgaagGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGG---------------------------------------------GAGCAGGAGCAGGAGCGCCTTCGGGCCAAGAGgttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca Alignment from Spaln_nt2Genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGAAGGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGGGAGCAGGAGCAGGAGCGCCTTCGGGCCAAGAGgttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca Alignment from Pairagon GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGAAGGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGGGAGCAGGAGCAGGAGCGCCTTCGGGCCAAGAGgttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca Alignment from Exonerate_protein2genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGAAGGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGGGAGCAGGAGCAGGAGCGCCTTCGGGCCAAGAGgttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca Alignment from Exonerate_coding2genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGAAGGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGGGAGCAGGAGCAGGAGCGCCTTCGGGCCAAGAGgttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca Alignment from GeneWise GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ggcacaaacctggcttgggtgtcctgcactgatctcaggtccccacgcagGAGGAGGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAAGAGCGCCGCAAAGTGGCTGAGGCCAGATGCTTGGCGGAACAGCAGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGAAGGGAACAGGAGCGCAGGGAACAGGAACGGAAGGAGCAGGAGCGTCGGGAGCAGGAGCAGGAGCGCCTTCGGGCCAAGAGgttcgtcccactgaccatttgctactgatcagtgtcaggattgacaggca #### Incenp_ID2607_12 --> 0 - 0 Original Alignment GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAAG------GAAGATGTAGAGGCACAAAGGAAG---GAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc Alignment from CESAR GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAAG------GAAGATGTAGAGGCACAAAGGAAG---GAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc Alignment from Spaln_aa2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAAG------GAAGATGTAGAGGCACAAAGGAAG---GAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc Alignment from Spaln_nt2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAA------GGAAGATGTAGAGGCACAAAGGA---AGGAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc Alignment from Pairagon GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAA------GGAAGATGTAGAGGCACAAAGGA---AGGAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc Alignment from Exonerate_protein2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAAG------GAAGATGTAGAGGCACAAAGGAAG---GAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc Alignment from Exonerate_coding2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAAG------GAAGATGTAGAGGCACAAAGGAAG---GAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc Alignment from GeneWise GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG gctgcgtgctaaggtagaggctgctccacacacgtgttcttgacccccagGCTGCAGAGGAGCGTCTGGCAGAGAAAGCAAAGAAGAAGGCAACTGCCAAG------GAAGATGTAGAGGCACAAAGGAAG---GAGGAGGAGGCACGCAGGCTCAGGTGGGTCCAACAGgtaaggttgggtgtgaacagggaagcagtaggtaaaacgggtactgactc #### Incenp_ID2612_7 --> 2 - 2 Original Alignment aaGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCag accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagatGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCaggtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag Alignment from CESAR aaGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCag accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagatGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCaggtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag Alignment from Spaln_aa2Genome AAGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCAG accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagATGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCAGgtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag Alignment from Spaln_nt2Genome AAGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCAG accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagATGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCAGgtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag Alignment from Pairagon AAGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCAG accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagATGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCAGgtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag Alignment from Exonerate_protein2genome AAGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCAG accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagATGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCAGgtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag Alignment from Exonerate_coding2genome AAGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCAG accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagATGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCAGgtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag Alignment from GeneWise AAGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAGAGTGTCAG accccttcactatcgctcaaacaacttcaactcatgggcgctccctccagATGCGGAGCTTGACCAGACAGATGGGCACAGAGAACCACCCCAGAGTGTCAGgtgaggatctggaaaagggatgtgtagccagcctggagtgagcatctgag #### Incenp_ID2616_3 --> 1 - 1 Original Alignment gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagaTTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTtgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg Alignment from CESAR gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagaTTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTtgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg Alignment from Spaln_aa2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGG------GCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagATTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCC---ACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGCATTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTTgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg Alignment from Spaln_nt2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAGG------AGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagATTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGC---ATTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTTgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg Alignment from Pairagon GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagATTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGC---ATTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTTgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg Alignment from Exonerate_protein2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagATTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTTgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg Alignment from Exonerate_coding2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagATTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTTgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg Alignment from GeneWise GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT ggcacctcttgctttggattgtctcagtactttgtctgtctccctggcagATTATCCCGCAGAAAGTCTCGGAGCAGCCAGGTGGGTACCCGATACCTCCGGAGCAAGCCTGTCATTATTGTTGAGGTTGAGGAGAATGGTTTCCCTGTTTTGCAGCGGATAACTCGTGCCACAGCTGCAGCAGCAGCAGCAGCAGCAGCAACATCTGTTGCATCAGCTTCTTTCCCTTCCACTTCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTAGAGATAAGTACAAGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGGTAGCCTGCCTCCATCTCCAGTTTCCCAAGGCACTCTGACCTCAGATAAGGAACTGACACCCAAGAAGTCAGAGGCAGGAAAGTTGGACTCTGTCACAGTGAACTCCCTTAAGGCTACCCCTCAGAGCCCCAGGAACCGAGGAGTTGGGGAAGGACGTTCTGTCTCCAAGCTCAAGATTGCTCAGGCATCCTGGGGGCTGCAGGACTCTCCTGGTTCTACAGACTTGCCATGGCAAGAGCAGGTGCTTTCTCCTATTCTGCTGAATAACATCTTGCCCACAACCGCCCAGAGCCCTCTTGGGAATATTCAGTCAGTACGACGAAGCCTGATTTCCCAGGATTCCCATGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAGAATGGGAGTCGCAGATCAAGCAGAAGAATTGCAAAAAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTTgtaagtgtggagtagttgtggggtgatcatatggtaggtggtccctggtg #### Jak2_ID6228_4 --> 0 - 2 Original Alignment TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCag tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCaggtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat Alignment from CESAR TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCag tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCaggtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat Alignment from Spaln_aa2Genome TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAG tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGgtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat Alignment from Spaln_nt2Genome TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAG tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGgtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat Alignment from Pairagon TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAG tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGgtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat Alignment from Exonerate_protein2genome TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAG tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGgtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat Alignment from Exonerate_coding2genome TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAG tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGgtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat Alignment from GeneWise TGGCGGCATGATTTTGTTCACGGATGGATAAAAGTACCTGTGACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCGGTGTTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAG tgtacagtaaagtaaaaattaagccatgctctctgcctccctccccccagTGGCGGCATGATTTTGTTCATGGATGGATAAAAGTACCTGTTACTCATGAAACTCAGGAAGAGTGTCTTGGGATGGCAGTGCTAGACATGATGAGAATAGCTAAGGAGAAAGACCAGACTCCACTGGCTGTCTATAACTCTGTCAGgtgagttccactcacaaagcaatacatactaggtattgtttgggtgatat #### Jak2_ID6229_5 --> 1 - 0 Original Alignment cTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagcTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca Alignment from CESAR cTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagcTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca Alignment from Spaln_aa2Genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca Alignment from Spaln_nt2Genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca Alignment from Pairagon CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca Alignment from Exonerate_protein2genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca Alignment from Exonerate_coding2genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca Alignment from GeneWise CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG gttggtagaactagtttcctgaacttgttgtcactgtttgtctcttccagCTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCCGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAGgtgagtctaatgatacattctcgttatttcttctatatgttgaatgccca #### Jak2_ID6235_11 --> 0 - 0 Original Alignment AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa Alignment from CESAR AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa Alignment from Spaln_aa2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa Alignment from Spaln_nt2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa Alignment from Pairagon AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa Alignment from Exonerate_protein2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa Alignment from Exonerate_coding2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa Alignment from GeneWise AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatccatctttgttcacttcttgcttctttttttttttttcatggccagAATGAAAGTCTTGGCCAGGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagactgttagttggactctttacatggctttttacactatggataaa #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAggtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAggtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAGgtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAGgtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAGgtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAGgtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAGgtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gagtaagagcactttggagtgtgccttacctcaatacacttcctttccagAAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCCGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTGTCATCCGCGATCTTAACAGCCTGTTTACTCCAGgtgaaggctggtcaggctcctctgaccactgatgttctatgtttcttgct #### Jak2_ID6241_17 --> 2 - 0 Original Alignment atTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagatTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt Alignment from CESAR atTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagatTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt Alignment from Spaln_aa2Genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt Alignment from Spaln_nt2Genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt Alignment from Pairagon ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt Alignment from Exonerate_protein2genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt Alignment from Exonerate_coding2genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt Alignment from GeneWise ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ctagagacagtatctaaccatttaatgtaccatctccaattgtatcatagATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAGTTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgtgttgtcataagttttcaaatagaatataatttggaacaaaaggctt #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacaggtCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacaggtCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG ttaacaaaatacagcacaataaaacattcagcttgacgtcttctttacagGTCGGCGCAACCTAAGGTTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAAAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagtaccactccacatgtctcttgtatatggtgaactaagtcaagtta #### Kank1_ID5457_4 --> 2 - 2 Original Alignment taTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgg agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagtaTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgggtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact Alignment from CESAR taTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgg agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagtaTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgggtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact Alignment from Spaln_aa2Genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGgtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact Alignment from Spaln_nt2Genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGgtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact Alignment from Pairagon TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGgtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact Alignment from Exonerate_protein2genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGgtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact Alignment from Exonerate_coding2genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGgtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact Alignment from GeneWise TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG agtttctcacacaaccatgttaaggtctaacacattgcttctctctctagTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGgtgagtaacactggcggtggtggggtgcagggacatctatgtcccttact #### Kank1_ID5459_5 --> 1 - 2 Original Alignment gTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGag agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagtTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGaggtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc Alignment from CESAR gTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGag agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagtTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGaggtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc Alignment from Spaln_aa2Genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACACCATTGGGTACCCT---CCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagTTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGAGgtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc Alignment from Spaln_nt2Genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTG---ACACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagTTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGAGgtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc Alignment from Pairagon GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTG---ACACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagTTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGAGgtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc Alignment from Exonerate_protein2genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagTTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGAGgtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc Alignment from Exonerate_coding2genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagTTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGAGgtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc Alignment from GeneWise GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG agtctctatgggttcatcctgcatctcttttgtaatatctgaatggacagTTATGAGACGACTTCAAGTGATGAATCAAGCTCAGATGGAAGCTCTTCTTCCGAGTCAGATGAGGAGTGTGACAACACCATCGGGTACCCTCCTGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCATGACACTCGAGGAATGGCAGAGGGACACCATGCAGTTAACATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTCCCAGAATGTGAGCCAGAGAAAGAGGAACTCAGAGAGAGgtaagttacaccgcccctcccctccctgattctctccctgagtgaggtgc #### Kank1_ID5463_9 --> 0 - 0 Original Alignment GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc Alignment from CESAR GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc Alignment from Spaln_aa2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc Alignment from Spaln_nt2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc Alignment from Pairagon GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc Alignment from Exonerate_protein2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc Alignment from Exonerate_coding2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc Alignment from GeneWise GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttctcccccccagttggcacttctaactccatcactctttcctcctgcagCCAGGACAGACACCCCTCATGCTAGCCGTGAGTCATGGGCGAATAGATATGGTGAAGGGCCTGCTTGCTTGTGGCGCTGATGTCAATATCCAGGATGATGAGGGCTCCACCGCCCTGATGTGTGCAAGTGAACATGGGCATGTGGAGATTGTGAAGTTGCTGCTGGCCCAAAAAGGCTGCAATGGCCACCTGGAAGATAACgtagttaccacttgatctccagccaggatggggtgtgggcccctctttcc #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagtGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagtGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac #### Kazald1_ID9300_2 --> 2 - 0 Original Alignment agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagagCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa Alignment from CESAR agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagagCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa Alignment from Spaln_aa2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa Alignment from Spaln_nt2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa Alignment from Pairagon AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa Alignment from Exonerate_protein2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa Alignment from Exonerate_coding2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa Alignment from GeneWise AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaactgttctcaagcctcccctcatggtgtttcttcaatattacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGACGACCCTCATATCTCATTGCAGgtaagtgccagggtgcatggggctgaaaagacaaaaacaaaaataaggaa #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG aaaacttcaactggcttgctcttaggagctattgtttacaacttccttagGAAATGCTTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAGgtgagcgggtctgggttggctggaggctctggggtggatagaaggacact #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccataccaaagtgggttggcagagctgccactactgtgtctcccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtggggggccactgggggtaagaggggtggcatgtgagggcctgtggcaa #### Kcnip2_ID9608_4 --> 2 - 0 Original Alignment acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagacAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct Alignment from CESAR acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagacAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct Alignment from Spaln_aa2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagACAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct Alignment from Spaln_nt2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagACAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct Alignment from Pairagon ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagACAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct Alignment from Exonerate_protein2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagACAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct Alignment from Exonerate_coding2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagACAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct Alignment from GeneWise ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC atcccaggggcctaagctgcagtaaagtactcctctgtttgcctccctagACAGTGTGGAGGATGAGTTTGAACTATCCACGGTCTGCCACCGGCCTGAGGGTCTGGAACAACTACAGGAACAAGCCAAGTTCACACGCAGAGAGTTGCAGGTCTTGTATAGAGGCTTCAAGAACgtaaaggaagggtagaaccagctgggcaggggcctgaccttcaagttcct #### Kcnk7_ID1212_2 --> 2 - 1 Original Alignment gtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCA---------CTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTg acgggcagacatctcagaaacttgctgcgacacttatttttcttccttaggtTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTggtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat Alignment from CESAR gtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTT---------GTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTg acgggcagacatctcagaaacttgctgcgacacttatttttcttccttaggtTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTggtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat Alignment from Spaln_aa2Genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTT---------GTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG acgggcagacatctcagaaacttgctgcgacacttatttttcttccttagGTTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat Alignment from Spaln_nt2Genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACT---------TGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG acgggcagacatctcagaaacttgctgcgacacttatttttcttccttagGTTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat Alignment from Pairagon GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACT---------TGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG acgggcagacatctcagaaacttgctgcgacacttatttttcttccttagGTTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat Alignment from Exonerate_protein2genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTT---------GTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG acgggcagacatctcagaaacttgctgcgacacttatttttcttccttagGTTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat Alignment from Exonerate_coding2genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTT---------GTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG acgggcagacatctcagaaacttgctgcgacacttatttttcttccttagGTTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat Alignment from GeneWise GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCC---------CTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG acgggcagacatctcagaaacttgctgcgacacttatttttcttccttagGTTACGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATACAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCTGTGGCTGCTCTGCGCCACTGCCTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTCGCCATTCGCTGGCAGCTGGCACCAGCTAAGGCTGCTCTGCTTCAAGCAGCAGGACTGGGCCTCCTGGTGGCCTATGTCTTCATGCTGTTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTTGAAGCCATTTACTACTGCTTCGGCTCACTCAGCATGATTGGCCTAGGAGACCTGCTTCCTGCCCATGGACGTGGGCTGCACCCCGCCATTTACCACCTTGGGCAGTTTGCACTTCTTGgtaagcgcagagaacaaaaggttagggagggtcttgacaacaactcccat #### Kdm2a_ID502_18 --> 2 - 1 Original Alignment gaTTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAg aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttaggaTTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAggtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt Alignment from CESAR gaTTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAg aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttaggaTTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAggtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt Alignment from Spaln_aa2Genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttagGATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGgtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt Alignment from Spaln_nt2Genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttagGATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGgtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt Alignment from Pairagon GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttagGATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGgtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt Alignment from Exonerate_protein2genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttagGATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGgtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt Alignment from Exonerate_coding2genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttagGATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGgtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt Alignment from GeneWise GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG aaaggcattttcaacccagtatgtcatagctgattgcttttttgttttagGATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGGATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAGgtaaacctctgggtctgcctcactgcctatctgacctttttttctttttt #### Kdm2a_ID515_6 --> 0 - 2 Original Alignment GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaa ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaagtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt Alignment from CESAR GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaa ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaagtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt Alignment from Spaln_aa2Genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAAgtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt Alignment from Spaln_nt2Genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAAgtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt Alignment from Pairagon GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAAgtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt Alignment from Exonerate_protein2genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAAgtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt Alignment from Exonerate_coding2genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAAgtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt Alignment from GeneWise GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgcttttcctgaatcctaaatgccttgctttctctcctctcttagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAAgtcagtgacttattgtgcattttcctcagtgttctgcgaggtagtgaatt #### Keg1_ID3445_2 --> 0 - 0 Original Alignment GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc Alignment from CESAR GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc Alignment from Spaln_aa2Genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc Alignment from Spaln_nt2Genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc Alignment from Pairagon GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc Alignment from Exonerate_protein2genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc Alignment from Exonerate_coding2genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc Alignment from GeneWise GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG ataaccctttttttaacatgcttacattccttgactgcttgttttgacagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGGCCACAGGAAGAGgtaagtggcaatggatagtaattatgactgtaccagcatttgtgggattc #### Keg1_ID3447_4 --> 2 - 2 Original Alignment gtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTct gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaaggtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTctgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg Alignment from CESAR gtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTct gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaaggtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTctgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg Alignment from Spaln_aa2Genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTCT gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaagGTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTCTgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg Alignment from Spaln_nt2Genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTCT gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaagGTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTCTgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg Alignment from Pairagon GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTCT gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaagGTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTCTgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg Alignment from Exonerate_protein2genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTCT gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaagGTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTCTgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg Alignment from Exonerate_coding2genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTCT gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaagGTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTCTgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg Alignment from GeneWise GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGCTCACGCCTCT gttaatgtgattaattgtacatcacttgttaatttccttttaccctaaagGTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAATTTGGGCAAGGTCCAACATAAACAGTGCTTCCTCTATATGGTATGCCAATCAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCGAAAAACTTAGTAGTCAGCCGTAACAAGCTCACACCTCTgttagtgtaaccaaagctgatctgttagattccatattctcttattcatg #### Kif11_ID7314_4 --> 1 - 0 Original Alignment aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagaTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa Alignment from CESAR aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagaTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa Alignment from Spaln_aa2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa Alignment from Spaln_nt2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa Alignment from Pairagon ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa Alignment from Exonerate_protein2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa Alignment from Exonerate_coding2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa Alignment from GeneWise ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG gtatatgctgtttgacttagtgttattcacatggcctcttttctctacagATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAGGGCGAAAGATCACCTAATGAAGTATATACCTGGGAGGAGgtaagaattgttcttttatctcagttgtagcaaaaaactacccagctaaa #### Kif11_ID7317_7 --> 1 - 0 Original Alignment tCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagtCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga Alignment from CESAR tCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagtCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga Alignment from Spaln_aa2Genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga Alignment from Spaln_nt2Genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga Alignment from Pairagon TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga Alignment from Exonerate_protein2genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga Alignment from Exonerate_coding2genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga Alignment from GeneWise TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG tgttgatgggaaacggataaaggagtcacatattttgcctgatattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtacacatgctgccttgataccaccgtgctagtcttgatttcatcatgga #### Kif11_ID7321_11 --> 1 - 0 Original Alignment aGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagaGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga Alignment from CESAR aGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagaGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga Alignment from Spaln_aa2Genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagAGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga Alignment from Spaln_nt2Genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagAGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga Alignment from Pairagon AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagAGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga Alignment from Exonerate_protein2genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagAGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga Alignment from Exonerate_coding2genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagAGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga Alignment from GeneWise AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG tgtagaactcagaacaaaaaattaactatcaatttgtgtttctattttagAGCCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTCCTTGAGGAGGAACTCAGTAAGgtgggctctgggcacacaagcctgggtgacagggattactaaaatgacga #### Kif11_ID7322_12 --> 0 - 0 Original Alignment GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca Alignment from CESAR GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca Alignment from Spaln_aa2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca Alignment from Spaln_nt2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca Alignment from Pairagon GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca Alignment from Exonerate_protein2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca Alignment from Exonerate_coding2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca Alignment from GeneWise GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG acaacactgctccctgattaataaagaactctcttcactttcttggccagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAATCCGACCTGCAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagccttggtaaaactatcattacacaaattgtaatttatccattcca #### Kif11_ID7323_13 --> 0 - 1 Original Alignment TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTggtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg Alignment from CESAR TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTggtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg Alignment from Spaln_aa2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg Alignment from Spaln_nt2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg Alignment from Pairagon TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg Alignment from Exonerate_protein2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg Alignment from Exonerate_coding2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg Alignment from GeneWise TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG gcttttatattatcttctctagtttgtttaaaattcacaccttttatcagTTGCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATTGACGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAATAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaggtgtgagccctcctgtggtagtccattgcatggctgtgtgttcatg #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattaggGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat Alignment from CESAR gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattaggGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattagGGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattagGGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattagGGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattagGGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattagGGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gctacatgtgattaagttgttttttaatatactaactttgttttcattagGGAGACAGTTATTCATGAACGAGAAATATTGGAAGAAAATGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtgagctgatgataaaattaaaaatcttgatgtttcctcacgttaatgat #### Kif20b_ID7020_25 --> 0 - 0 Original Alignment GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg Alignment from CESAR GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg Alignment from Spaln_aa2Genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg Alignment from Spaln_nt2Genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg Alignment from Pairagon GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg Alignment from Exonerate_protein2genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg Alignment from Exonerate_coding2genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg Alignment from GeneWise GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatctgtataattacatatcagtactcaacctgtattctcttcaatgcagGAAACACTAACGGCACAGTTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCATGACCAACTAGTTACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCTAGCTGCAAGCACAAGGATGAAAAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACAGGGACAgtaacggggcttcttgtagaaaactacctttcaaaatcacttctcagctg #### Kif20b_ID7022_27 --> 0 - 0 Original Alignment GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt Alignment from CESAR GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt Alignment from Spaln_aa2Genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt Alignment from Spaln_nt2Genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt Alignment from Pairagon GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt Alignment from Exonerate_protein2genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt Alignment from Exonerate_coding2genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt Alignment from GeneWise GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaatttaacccttttatacttctagGATGGATCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAATGTACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaatcaactatctggatagtcagtatctggatagttagttttgtctgtt #### Kif20b_ID7024_28 --> 0 - 0 Original Alignment GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct Alignment from CESAR GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct Alignment from Spaln_aa2Genome GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct Alignment from Spaln_nt2Genome GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct Alignment from Pairagon GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct Alignment from Exonerate_protein2genome GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct Alignment from Exonerate_coding2genome GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct Alignment from GeneWise GACTTGGTGAAATGTGAAAATAAGAAGAATTCAACCCCCAGAAGTAATGTGAAGTTTCCCGTTTCAGAGCATAGAAATTCCCCTGTCAAAAAGGAACAAAAG attgtggtcaaaaaaataactagtactgtaagttattatctctgtcgcagGATTTGGTGAAATGTGAGAATAAGAAGAATTCAACCCCCAGAAGTAATGTAAAGTTTCCTGTTTCAAAGCATAGAAACTCCCCTGTCAAAAAGGAACAGAAGgtagggccactgtggtccacccaaccattttacaagatagagcaggacct #### Kif20b_ID7025_29 --> 0 - 1 Original Alignment GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAg ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAggtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from CESAR GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAg ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAggtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Spaln_aa2Genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Spaln_nt2Genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Pairagon GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Exonerate_protein2genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Exonerate_coding2genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from GeneWise GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG ctcacagtcacccacttaattattagtgggcctaactccttttaacccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtaagtgggatagtgaaatgaccttttcaattatatgcaatgtgtcttcc #### Kif20b_ID7026_30 --> 2 - 0 Original Alignment caAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagcgAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa Alignment from CESAR caAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagcgAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa Alignment from Spaln_aa2Genome CAAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagCGAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa Alignment from Spaln_nt2Genome CAAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagCGAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa Alignment from Pairagon CAAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagCGAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa Alignment from Exonerate_protein2genome CAAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagCGAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa Alignment from Exonerate_coding2genome CAAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagCGAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa Alignment from GeneWise CAAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACGGTAGAAGTAAGTAAAGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTG cttgataactcagaggtcagtaacaccacatgtcttgccctggccactagCGAAAAAGATAATTGAAACAATGAGTTCTCCAAAGTTATCAACAGTAGAAGTAAGCAAGGAAAATGTGTCCCAGCCAAAAAAAGCCAAACGGAAATTATACAGAAATGAAATTTCATCTCCCATCAACATATCTGGCCAAGTAgtgaattattttatttttctctttgacagaatcaagctataaatttacaa #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Exonerate_coding2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG cctgggactatttcccctggaggccaatgtgatttgtatttgtcccttagCTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtaggctccttgccccaacccgctaaaatagctgtggccttagcttcttc #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tggtagtaaaagaacgagggcaagggattgaacagccctcccattcccagGTGTGTGTGGAAGGCCGGTTGTACTTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCAAGAAGTATCCTGGCCATGCATgtgagatggcgccagcacctgagatgagggttggggactgagatgtggga #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from GeneWise CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga #### Lgals12_ID2187_6 --> 0 - 0 Original Alignment CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat Alignment from CESAR CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat Alignment from Spaln_aa2Genome CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat Alignment from Spaln_nt2Genome CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat Alignment from Pairagon CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat Alignment from Exonerate_protein2genome CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat Alignment from Exonerate_coding2genome CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat Alignment from GeneWise CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattttgcattttttttttctcacagCCCTTCCTGCTGTACAGTCCCAGGCTGgtaagtaactctcactccaggcctctcctgaaggtgaagggaaattccat #### Lgals12_ID2188_5 --> 0 - 0 Original Alignment CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt Alignment from CESAR CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt Alignment from Spaln_aa2Genome CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt Alignment from Spaln_nt2Genome CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt Alignment from Pairagon CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt Alignment from Exonerate_protein2genome CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt Alignment from Exonerate_coding2genome CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt Alignment from GeneWise CCATTTGTGGAGGGTAGCAGAGAGTATCCAGTTGGATAT aacatcccctcagttcttctgctacctcttgtaatgcccatgtgtttcagCCATCTGTGGAGGGTAGCAGGGAGTATCCAGTTGGATATgtaaacttctttccttaaattattttttttgattatttatttatttattt #### Lgi1_ID7577_2 --> 1 - 2 Original Alignment aTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCtt atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagaTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCttgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt Alignment from CESAR aTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCtt atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagaTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCttgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt Alignment from Spaln_aa2Genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCTTgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt Alignment from Spaln_nt2Genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCTTgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt Alignment from Pairagon ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCTTgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt Alignment from Exonerate_protein2genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCTTgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt Alignment from Exonerate_coding2genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCTTgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt Alignment from GeneWise ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT atgtgtgtctgtttgttttgtgtgtgtgttttgtctgccttatcttacagATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCCTATTCACACCATCGCTGCAGCTCTTgtaaatcacatctgtattagggctatttttattatggcatgtactcaggt #### Lgi1_ID7579_4 --> 1 - 2 Original Alignment aTTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACtt tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagaTTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACttgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt Alignment from CESAR aTTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACtt tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagaTTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACttgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt Alignment from Spaln_aa2Genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt Alignment from Spaln_nt2Genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt Alignment from Pairagon ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt Alignment from Exonerate_protein2genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt Alignment from Exonerate_coding2genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt Alignment from GeneWise ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT tcagtgctgctacttgtctgaccaaatgtcctctctctctctaactgtagATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagtaactattatttttttttaggctcccttgtttggctgaatttggt #### Lipa_ID6936_7 --> 0 - 0 Original Alignment TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG agagtattgccttagcactattttcctaagcatgggccttgcttttgtagTCTAGAGTGGATGTGTATACAACCCACTGCCCTTCAGGAACTTCTGTGCAAAACATGTTACACTGGGGTGAAgtatgtaaagagatccatcaaactcatgtcacattagtatttgataccat Alignment from CESAR TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG agagtattgccttagcactattttcctaagcatgggccttgcttttgtagTCTAGAGTGGATGTGTATACAACCCACTGCCCTTCAGGAACTTCTGTGCAAAACATGTTACACTGGGGTGAAgtatgtaaagagatccatcaaactcatgtcacattagtatttgataccat Alignment from Spaln_aa2Genome TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG agagtattgccttagcactattttcctaagcatgggccttgcttttgtagTCTAGAGTGGATGTGTATACAACCCACTGCCCTTCAGGAACTTCTGTGCAAAACATGTTACACTGGGGTGAAgtatgtaaagagatccatcaaactcatgtcacattagtatttgataccat Alignment from Spaln_nt2Genome TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG agagtattgccttagcactattttcctaagcatgggccttgcttttgtagTCTAGAGTGGATGTGTATACAACCCACTGCCCTTCAGGAACTTCTGTGCAAAACATGTTACACTGGGGTGAAgtatgtaaagagatccatcaaactcatgtcacattagtatttgataccat Alignment from Pairagon TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG agagtattgccttagcactattttcctaagcatgggccttgcttttgtagTCTAGAGTGGATGTGTATACAACCCACTGCCCTTCAGGAACTTCTGTGCAAAACATGTTACACTGGGGTGAAgtatgtaaagagatccatcaaactcatgtcacattagtatttgataccat Alignment from Exonerate_protein2genome TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG agagtattgccttagcactattttcctaagcatgggccttgcttttgtagTCTAGAGTGGATGTGTATACAACCCACTGCCCTTCAGGAACTTCTGTGCAAAACATGTTACACTGGGGTGAAgtatgtaaagagatccatcaaactcatgtcacattagtatttgataccat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG agagtattgccttagcactattttcctaagcatgggccttgcttttgtagTCTAGAGTGGATGTGTATACAACCCACTGCCCTTCAGGAACTTCTGTGCAAAACATGTTACACTGGGGTGAAgtatgtaaagagatccatcaaactcatgtcacattagtatttgataccat #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgggaggaatttcttggagacctggtcctaacttgctctttctccctaggtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCGAAGAAGATCAAAATGTTTTTAGTCTTGGCTCCTGTGTTGTCTCTCAATTTTGCTTCAGGCCCACTACTGCAATTGGGACATTTGCCAGATCCTCTGCTCAAAgtgagtgggccccacccagctcactgatactctcttttgaactgggaaat Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgggaggaatttcttggagacctggtcctaacttgctctttctccctaggtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCGAAGAAGATCAAAATGTTTTTAGTCTTGGCTCCTGTGTTGTCTCTCAATTTTGCTTCAGGCCCACTACTGCAATTGGGACATTTGCCAGATCCTCTGCTCAAAgtgagtgggccccacccagctcactgatactctcttttgaactgggaaat Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgggaggaatttcttggagacctggtcctaacttgctctttctccctagGTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCGAAGAAGATCAAAATGTTTTTAGTCTTGGCTCCTGTGTTGTCTCTCAATTTTGCTTCAGGCCCACTACTGCAATTGGGACATTTGCCAGATCCTCTGCTCAAAgtgagtgggccccacccagctcactgatactctcttttgaactgggaaat Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgggaggaatttcttggagacctggtcctaacttgctctttctccctagGTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCGAAGAAGATCAAAATGTTTTTAGTCTTGGCTCCTGTGTTGTCTCTCAATTTTGCTTCAGGCCCACTACTGCAATTGGGACATTTGCCAGATCCTCTGCTCAAAgtgagtgggccccacccagctcactgatactctcttttgaactgggaaat Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgggaggaatttcttggagacctggtcctaacttgctctttctccctagGTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCGAAGAAGATCAAAATGTTTTTAGTCTTGGCTCCTGTGTTGTCTCTCAATTTTGCTTCAGGCCCACTACTGCAATTGGGACATTTGCCAGATCCTCTGCTCAAAgtgagtgggccccacccagctcactgatactctcttttgaactgggaaat Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgggaggaatttcttggagacctggtcctaacttgctctttctccctagGTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCGAAGAAGATCAAAATGTTTTTAGTCTTGGCTCCTGTGTTGTCTCTCAATTTTGCTTCAGGCCCACTACTGCAATTGGGACATTTGCCAGATCCTCTGCTCAAAgtgagtgggccccacccagctcactgatactctcttttgaactgggaaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgggaggaatttcttggagacctggtcctaacttgctctttctccctagGTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCGAAGAAGATCAAAATGTTTTTAGTCTTGGCTCCTGTGTTGTCTCTCAATTTTGCTTCAGGCCCACTACTGCAATTGGGACATTTGCCAGATCCTCTGCTCAAAgtgagtgggccccacccagctcactgatactctcttttgaactgggaaat #### Lipa_ID6940_3 --> 2 - 2 Original Alignment gtCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCag aagcattatgtttgctgagaaggttcatcttactttgccttctttttcaggtCCCAGACCAGTTGTGTATCTTCAACATGGTTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCCTGGGTTTCCTCCTGGCAGACGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACATGGTCACTGAAGCACAAGACTCTTTCAGTTTCTCAGGACGAGTTCTGGGCCTTCaggtatggcacagttgactatgatttggatatgtccaagacatttacatctt Alignment from CESAR gtCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCag aagcattatgtttgctgagaaggttcatcttactttgccttctttttcaggtCCCAGACCAGTTGTGTATCTTCAACATGGTTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCCTGGGTTTCCTCCTGGCAGACGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACATGGTCACTGAAGCACAAGACTCTTTCAGTTTCTCAGGACGAGTTCTGGGCCTTCaggtatggcacagttgactatgatttggatatgtccaagacatttacatctt Alignment from Spaln_aa2Genome GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG aagcattatgtttgctgagaaggttcatcttactttgccttctttttcagGTCCCAGACCAGTTGTGTATCTTCAACATGGTTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCCTGGGTTTCCTCCTGGCAGACGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACATGGTCACTGAAGCACAAGACTCTTTCAGTTTCTCAGGACGAGTTCTGGGCCTTCAGgtatggcacagttgactatgatttggatatgtccaagacatttacatctt Alignment from Spaln_nt2Genome GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG aagcattatgtttgctgagaaggttcatcttactttgccttctttttcagGTCCCAGACCAGTTGTGTATCTTCAACATGGTTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCCTGGGTTTCCTCCTGGCAGACGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACATGGTCACTGAAGCACAAGACTCTTTCAGTTTCTCAGGACGAGTTCTGGGCCTTCAGgtatggcacagttgactatgatttggatatgtccaagacatttacatctt Alignment from Pairagon GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG aagcattatgtttgctgagaaggttcatcttactttgccttctttttcagGTCCCAGACCAGTTGTGTATCTTCAACATGGTTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCCTGGGTTTCCTCCTGGCAGACGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACATGGTCACTGAAGCACAAGACTCTTTCAGTTTCTCAGGACGAGTTCTGGGCCTTCAGgtatggcacagttgactatgatttggatatgtccaagacatttacatctt Alignment from Exonerate_protein2genome GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG aagcattatgtttgctgagaaggttcatcttactttgccttctttttcagGTCCCAGACCAGTTGTGTATCTTCAACATGGTTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCCTGGGTTTCCTCCTGGCAGACGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACATGGTCACTGAAGCACAAGACTCTTTCAGTTTCTCAGGACGAGTTCTGGGCCTTCAGgtatggcacagttgactatgatttggatatgtccaagacatttacatctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG aagcattatgtttgctgagaaggttcatcttactttgccttctttttcagGTCCCAGACCAGTTGTGTATCTTCAACATGGTTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCCTGGGTTTCCTCCTGGCAGACGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACATGGTCACTGAAGCACAAGACTCTTTCAGTTTCTCAGGACGAGTTCTGGGCCTTCAGgtatggcacagttgactatgatttggatatgtccaagacatttacatctt #### Lipa_ID6941_2 --> 0 - 1 Original Alignment ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAg atttttggagatggaaaacctagaattccagccccccttgctttgtacagACTGAGATAATCATGCGCTGGGGCTATCCTGGTGAGGAACATTCAGTTTTGACCGGAGATGGCTACATTCTGAGTATTCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAggtactattattttctggtgctaggcataaaaacctttggaagtcactgca Alignment from CESAR ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAg atttttggagatggaaaacctagaattccagccccccttgctttgtacagACTGAGATAATCATGCGCTGGGGCTATCCTGGTGAGGAACATTCAGTTTTGACCGGAGATGGCTACATTCTGAGTATTCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAggtactattattttctggtgctaggcataaaaacctttggaagtcactgca Alignment from Spaln_aa2Genome ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG atttttggagatggaaaacctagaattccagccccccttgctttgtacagACTGAGATAATCATGCGCTGGGGCTATCCTGGTGAGGAACATTCAGTTTTGACCGGAGATGGCTACATTCTGAGTATTCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAGgtactattattttctggtgctaggcataaaaacctttggaagtcactgca Alignment from Spaln_nt2Genome ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG atttttggagatggaaaacctagaattccagccccccttgctttgtacagACTGAGATAATCATGCGCTGGGGCTATCCTGGTGAGGAACATTCAGTTTTGACCGGAGATGGCTACATTCTGAGTATTCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAGgtactattattttctggtgctaggcataaaaacctttggaagtcactgca Alignment from Pairagon ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG atttttggagatggaaaacctagaattccagccccccttgctttgtacagACTGAGATAATCATGCGCTGGGGCTATCCTGGTGAGGAACATTCAGTTTTGACCGGAGATGGCTACATTCTGAGTATTCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAGgtactattattttctggtgctaggcataaaaacctttggaagtcactgca Alignment from Exonerate_protein2genome ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG atttttggagatggaaaacctagaattccagccccccttgctttgtacagACTGAGATAATCATGCGCTGGGGCTATCCTGGTGAGGAACATTCAGTTTTGACCGGAGATGGCTACATTCTGAGTATTCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAGgtactattattttctggtgctaggcataaaaacctttggaagtcactgca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG atttttggagatggaaaacctagaattccagccccccttgctttgtacagACTGAGATAATCATGCGCTGGGGCTATCCTGGTGAGGAACATTCAGTTTTGACCGGAGATGGCTACATTCTGAGTATTCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAGgtactattattttctggtgctaggcataaaaacctttggaagtcactgca #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCggtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from CESAR AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCggtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Pairagon AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from GeneWise AGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGATATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga #### Lipf_ID6850_6 --> 0 - 0 Original Alignment GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg Alignment from CESAR GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg Alignment from Spaln_aa2Genome GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg Alignment from Spaln_nt2Genome GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg Alignment from Pairagon GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg Alignment from Exonerate_protein2genome GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg Alignment from Exonerate_coding2genome GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg Alignment from GeneWise GTGATATTTGGTAACAAAATGTTCATGCCCCACAACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGCTTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTG tggggtttctggtgtgttgttgtgttctacactttctgtttctcttgcagGTCATATTTGGTAACAAGATGTTCATGCCTCACAACTACTTAGATCAATTTCTTGGTACCGAAGTGTGCTCACGGGAGCTGCTAGATTTACTCTGCAGCAACGCTTTATTCATTTTCTGTGGATTTGACAAGAAAAATTTAAATGTGgtaggttcatgtagtggtctccattcatgaaacttccctaaacaccactg #### Lipf_ID6851_7 --> 0 - 0 Original Alignment AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt Alignment from CESAR AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt Alignment from Spaln_aa2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt Alignment from Spaln_nt2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt Alignment from Pairagon AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt Alignment from Exonerate_protein2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt Alignment from Exonerate_coding2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt Alignment from GeneWise AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG tccaagtatcactaagcatgtgtatgcagaatgttaatgttctattttagAGTTGCTTTGATGTGTATCTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagactgtttcaaagttgtcagcattgatcctgaggggttgaattctt #### Lipk_ID6860_4 --> 1 - 1 Original Alignment cTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAg gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagcTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAggtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat Alignment from CESAR cTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAg gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagcTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAggtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat Alignment from Spaln_aa2Genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagCTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAGgtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat Alignment from Spaln_nt2Genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagCTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAGgtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat Alignment from Pairagon CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagCTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAGgtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat Alignment from Exonerate_protein2genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagCTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAGgtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat Alignment from Exonerate_coding2genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagCTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAGgtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat Alignment from GeneWise CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gggggcttatctaaggcgtcttcttcgaacttgttctcgttctcctccagCTGGGACGAGATGGCGAAATATGATCTTCCAGCTACGGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAGgtgggtaaggggcttgatgaaatggtagtgatgtcaagtgttattaacat #### Lipk_ID6862_6 --> 0 - 0 Original Alignment GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc Alignment from CESAR GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc Alignment from Spaln_aa2Genome GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc Alignment from Spaln_nt2Genome GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc Alignment from Pairagon GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc Alignment from Exonerate_protein2genome GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc Alignment from Exonerate_coding2genome GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc Alignment from GeneWise GTATTGTTTGGTGACAAAATGTTCTCCACTCACACGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTTCCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATG cttgatatccattatctaagatggttaggccttctgtgctttttgcctagGTATTGTTTGGTGACAAAATGTCCTCCACTCACACTTGGTTTGAACAATTCATTGCTACCAAA---TGCAATCAGAAATTATTTCATCAGCTATGCAGCAACTTCCTGTTTTCGCTAAGTGGATTTGATCCCCAAAACTTTAACACAgtacccataagtgctcacttcctgaaaaacaaggcttttgtgaggaagtc #### Lipm_ID6885_5 --> 2 - 0 Original Alignment gcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcaggcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt Alignment from CESAR gcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcaggcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt Alignment from Spaln_aa2Genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt Alignment from Spaln_nt2Genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt Alignment from Pairagon GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt Alignment from Exonerate_protein2genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt Alignment from Exonerate_coding2genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt Alignment from GeneWise GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttatgcattttatagtcaccaatgggggctttctttcctgcactgcagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagggtgatacccaggtgcttctgtctgtgaaaaaatcagaccagatt #### Lipm_ID6888_8 --> 0 - 0 Original Alignment GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt Alignment from CESAR GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt Alignment from Spaln_aa2Genome GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt Alignment from Spaln_nt2Genome GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt Alignment from Pairagon GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt Alignment from Exonerate_protein2genome GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt Alignment from Exonerate_coding2genome GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt Alignment from GeneWise GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactataacccatgtccctttttcatatttaaacaatatcatttcagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtaccgttgtcaacttacattcacaccactaaaaagacccaccaaccttt #### Lipn_ID6875_7 --> 0 - 0 Original Alignment AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg Alignment from CESAR AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg Alignment from Spaln_aa2Genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg Alignment from Spaln_nt2Genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg Alignment from Pairagon AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg Alignment from Exonerate_protein2genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg Alignment from Exonerate_coding2genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg Alignment from GeneWise AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ccttaaataactgctacttaggattccaatttctttgtacaattttacagAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATACAGAATATGCTGCACATCAAGCAGgtaatcacgttgcgacacaactctttacttgttacaatgactgtaaaagg #### Lipo1_ID6827_6 --> 0 - 0 Original Alignment CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga Alignment from CESAR CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga Alignment from Spaln_aa2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga Alignment from Spaln_nt2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga Alignment from Pairagon CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga Alignment from Exonerate_protein2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga Alignment from Exonerate_coding2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga Alignment from GeneWise CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG ggcaatacactttttcacactaaactgcgttttttctcgccctgagtcagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtaactgttcttttctgtcaaactcaacattagtgcgtgtgtgtgtgtga #### Lipo1_ID6830_3 --> 2 - 2 Original Alignment ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTaggtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag Alignment from CESAR ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTaggtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag Alignment from Spaln_aa2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTAGgtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag Alignment from Spaln_nt2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACG---TGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTAGgtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag Alignment from Pairagon CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAAC---ACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTAGgtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag Alignment from Exonerate_protein2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTAGgtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag Alignment from Exonerate_coding2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTAGgtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag Alignment from GeneWise CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggtaaactatttgcatgattgacagtccccctttcttcccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCCTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGGAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAATTCTGGGATTTTAGgtgaggaaccattccatttctacttttagtttaatagttttgtcaagaag #### Loxl4_ID8574_2 --> 2 - 0 Original Alignment gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttaggtCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag Alignment from CESAR gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttaggtCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag Alignment from Spaln_aa2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttagGTCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag Alignment from Spaln_nt2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttagGTCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag Alignment from Pairagon GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttagGTCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag Alignment from Exonerate_protein2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttagGTCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag Alignment from Exonerate_coding2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttagGTCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag Alignment from GeneWise GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gcccctcctttgaccactcctcttgccttttgttctgtgcttctctttagGTCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACGGCGCCAGCATGGATATCACTCCGAGAAGGTGTCCAATGCACTTGGGCCTCAGgtaagtcagttgtctagttcctgtcctgagccaaaggctggatggggcag #### Lpxn_ID3477_8 --> 2 - 0 Original Alignment gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccaggcTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat Alignment from CESAR gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccaggcTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat Alignment from Spaln_aa2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccagGCTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat Alignment from Spaln_nt2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccagGCTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTT---ACCCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat Alignment from Pairagon GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccagGCTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTT---ACCCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat Alignment from Exonerate_protein2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccagGCTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat Alignment from Exonerate_coding2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccagGCTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat Alignment from GeneWise GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagttttaaacagcccagaataaaaagcttcctccccctctccagGCTTCCATGAGAAGGACAAGAAGCCATATTGCCAAGAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGTCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTTTAC---CCAGAGTGCTTTGTGTGTGGGgtaaggatgctcagtagccttcagtttaagggaagattgaagggatttat #### Lrp5_ID105_19 --> 2 - 1 Original Alignment ctGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTg tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagctGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCggtaagatttcaggcggattcttggggtggtggggtctggtatggagattg Alignment from CESAR ctGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTg tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagctGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCggtaagatttcaggcggattcttggggtggtggggtctggtatggagattg Alignment from Spaln_aa2Genome CTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTG tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagCTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCGgtaagatttcaggcggattcttggggtggtggggtctggtatggagattg Alignment from Spaln_nt2Genome CTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTG tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagCTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCGgtaagatttcaggcggattcttggggtggtggggtctggtatggagattg Alignment from Pairagon CTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTG tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagCTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCGgtaagatttcaggcggattcttggggtggtggggtctggtatggagattg Alignment from Exonerate_protein2genome CTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTG tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagCTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCGgtaagatttcaggcggattcttggggtggtggggtctggtatggagattg Alignment from Exonerate_coding2genome CTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTG tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagCTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCGgtaagatttcaggcggattcttggggtggtggggtctggtatggagattg Alignment from GeneWise CTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGCGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCCTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGTG tagaaactcaggaggtctttggcacaaacatgtttattttcactttgcagCTGTCTGTCTGCCCAATCAGTTCCGGTGCACCAGTGGCCAGTGTGTCCTCATCAAGCAACAGTGTGACTCGTTCCCCGACTGTGCTGATGGGTCTGATGAGCTCATGTGCGgtaagatttcaggcggattcttggggtggtggggtctggtatggagattg #### Lrp5_ID114_10 --> 0 - 2 Original Alignment ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCT------ACTAAAgg gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagACAATCAGCCGTGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTCGACTACCCTGAAGGAATGTCT---GACTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACCAACAGGATTGAGGTGGCCCGGCCAGATGGGCAG---------------------------------------AGGTCATTGGCTCTAGATCCTACTAAAGCTAAAgggtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac Alignment from CESAR ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAgg gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagACAATCAGCCGTGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTCGACTACCCTGAAGGAATGTCT---GACTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACCAACAGGATTGAGGTGGCCCGGCCAGATGGGCAG---------------------------------------AGGTCATTGGCTCTAGATCCTACTAAAGCTAAAgggtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac Alignment from Spaln_aa2Genome ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAGG gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagACAATCAGCCGTGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTCGACTACCCTGAAGGAATGTCT---GACTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACCAACAGGATTGAGGTGGCCCGGCCAGATGGGCAG---------------------------------------AGGTCATTGGCTCTAGATCCTACTAAAGCTAAAGGgtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac Alignment from Spaln_nt2Genome ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACTAAAG------G gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagACAATCAGCCGTGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTCGACTACCCTGAAGGAATGTCT---GACTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACCAACAGGATTGAGGTGGCCCGGCCAGATGGGCAG---------------------------------------AGGTCATTGGCTCTAGATCCTACTAAAGCTAAAGGgtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac Alignment from Pairagon ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTA------CTAAAGG gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagACAATCAGCCGTGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTCGACTACCCTGAAGGAATGTCT---GACTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACCAACAGGATTGAGGTGGCCCGGCCAGATGGGCAG---------------------------------------AGGTCATTGGCTCTAGATCCTACTAAAGCTAAAGGgtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac Alignment from Exonerate_protein2genome gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagacaatcagccgtgccttcatgaatgggagctcagtggagcatgtgagtgagtttggcctcgactaccctgaaggaatgtctgactggatgggcaagaacctctattgggcagacacagagaccaacaggattgaggtggcccggccagatgggcagaggtcattggctctagatcctactaaagctaaagggtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac Alignment from Exonerate_coding2genome gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagacaatcagccgtgccttcatgaatgggagctcagtggagcatgtgagtgagtttggcctcgactaccctgaaggaatgtctgactggatgggcaagaacctctattgggcagacacagagaccaacaggattgaggtggcccggccagatgggcagaggtcattggctctagatcctactaaagctaaagggtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac Alignment from GeneWise ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACTAAA------GG gggtttgctgagccctcacatggccctttttagaactctttctgtcgtagACAATCAGCCGTGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTCGACTACCCTGAAGGAATGTCT---GACTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACCAACAGGATTGAGGTGGCCCGGCCAGATGGGCAG---------------------------------------AGGTCATTGGCTCTAGATCCTACTAAAGCTAAAGGgtaggtgctttttgcctgttttatgatgcttccccctcctgtctttccac #### Lrp5_ID115_9 --> 2 - 0 Original Alignment gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG actccacctttgacagctgctgccattcactctttactacactcctacaggaACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCGACCAAGTGTGGCTGTCCAATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAATAATGATGTGGCTATCCCACTCACAGGTGTCAAAGAGGCCTGTGCGCTGGACTTTGATGTGTCCAACAATCATATCTACTGGACTGATGTCAGTTTCAAGgtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc Alignment from CESAR gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG actccacctttgacagctgctgccattcactctttactacactcctacaggaACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCGACCAAGTGTGGCTGTCCAATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAATAATGATGTGGCTATCCCACTCACAGGTGTCAAAGAGGCCTGTGCGCTGGACTTTGATGTGTCCAACAATCATATCTACTGGACTGATGTCAGTTTCAAGgtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc Alignment from Spaln_aa2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG actccacctttgacagctgctgccattcactctttactacactcctacagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCGACCAAGTGTGGCTGTCCAATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAATAATGATGTGGCTATCCCACTCACAGGTGTCAAAGAGGCCTGTGCGCTGGACTTTGATGTGTCCAACAATCATATCTACTGGACTGATGTCAGTTTCAAGgtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc Alignment from Spaln_nt2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG actccacctttgacagctgctgccattcactctttactacactcctacagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCGACCAAGTGTGGCTGTCCAATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAATAATGATGTGGCTATCCCACTCACAGGTGTCAAAGAGGCCTGTGCGCTGGACTTTGATGTGTCCAACAATCATATCTACTGGACTGATGTCAGTTTCAAGgtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc Alignment from Pairagon GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG actccacctttgacagctgctgccattcactctttactacactcctacagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCGACCAAGTGTGGCTGTCCAATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAATAATGATGTGGCTATCCCACTCACAGGTGTCAAAGAGGCCTGTGCGCTGGACTTTGATGTGTCCAACAATCATATCTACTGGACTGATGTCAGTTTCAAGgtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc Alignment from Exonerate_protein2genome actccacctttgacagctgctgccattcactctttactacactcctacaggaaccaacccatgtgcagatggaaatggagggtgcagccatctgtgcttcttcaccccacgtgcgaccaagtgtggctgtccaattggcctggagctgttgagtgacatgaagacctgcataatccccgaggctttcctggtattcaccagcagagccaccatccacaggatttccctggagactaacaataatgatgtggctatcccactcacaggtgtcaaagaggcctgtgcgctggactttgatgtgtccaacaatcatatctactggactgatgtcagtttcaaggtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc Alignment from Exonerate_coding2genome actccacctttgacagctgctgccattcactctttactacactcctacaggaaccaacccatgtgcagatggaaatggagggtgcagccatctgtgcttcttcaccccacgtgcgaccaagtgtggctgtccaattggcctggagctgttgagtgacatgaagacctgcataatccccgaggctttcctggtattcaccagcagagccaccatccacaggatttccctggagactaacaataatgatgtggctatcccactcacaggtgtcaaagaggcctgtgcgctggactttgatgtgtccaacaatcatatctactggactgatgtcagtttcaaggtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc Alignment from GeneWise GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG actccacctttgacagctgctgccattcactctttactacactcctacagGAACCAACCCATGTGCAGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCGACCAAGTGTGGCTGTCCAATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCTTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATTTCCCTGGAGACTAACAATAATGATGTGGCTATCCCACTCACAGGTGTCAAAGAGGCCTGTGCGCTGGACTTTGATGTGTCCAACAATCATATCTACTGGACTGATGTCAGTTTCAAGgtaaagggcatgaggtagtaaatacttgcagctttctatgaggccttgcc #### Lrp5_ID124_2 --> 2 - 2 Original Alignment ccTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATgg agctgatttctgtcctgcatagccatccggttttgatgtctattccccagccTCACCAATCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCCGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAAAACATTGTCATCTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCTGAGACCAACCACATTGAGGTTGCCAACCTCAACGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATgggtagggctcagattttctccccctcctatggggatgcatggggaacaaga Alignment from CESAR ccTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATgg agctgatttctgtcctgcatagccatccggttttgatgtctattccccagccTCACCAATCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCCGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAAAACATTGTCATCTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCTGAGACCAACCACATTGAGGTTGCCAACCTCAACGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATgggtagggctcagattttctccccctcctatggggatgcatggggaacaaga Alignment from Spaln_aa2Genome CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG agctgatttctgtcctgcatagccatccggttttgatgtctattccccagCCTCACCAATCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCCGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAAAACATTGTCATCTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCTGAGACCAACCACATTGAGGTTGCCAACCTCAACGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGGgtagggctcagattttctccccctcctatggggatgcatggggaacaaga Alignment from Spaln_nt2Genome CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG agctgatttctgtcctgcatagccatccggttttgatgtctattccccagCCTCACCAATCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCCGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAAAACATTGTCATCTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCTGAGACCAACCACATTGAGGTTGCCAACCTCAACGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGGgtagggctcagattttctccccctcctatggggatgcatggggaacaaga Alignment from Pairagon CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG agctgatttctgtcctgcatagccatccggttttgatgtctattccccagCCTCACCAATCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCCGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAAAACATTGTCATCTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCTGAGACCAACCACATTGAGGTTGCCAACCTCAACGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGGgtagggctcagattttctccccctcctatggggatgcatggggaacaaga Alignment from Exonerate_protein2genome GCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGAT------GGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG agctgatttctgtcctgcatagccatccggttttgatgtctattccccaGCCTCACCAATCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGC---CTGGAGGATGCAGCTGCCGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAAAACATTGTCATCTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCTGAGACCAACCACATTGAGGTTGCCAACCTCAACGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGGgtagggctcagattttctccccctcctatggggatgcatggggaacaaga Alignment from Exonerate_coding2genome agctgatttctgtcctgcatagccatccggttttgatgtctattccccagcctcaccaatcctgttgtttgccaaccgccgggatgtgcggctagtggatgccggcggagtgaagttggagtccaccattgtggccagtggcctggaggatgcagctgccgtagacttccagttctccaagggtgctgtgtactggacagatgtgagtgaggaggccatcaaacagacctacctgaaccagactggagctgctgcacaaaacattgtcatctcaggccttgtgtcacctgatggcctggcctgtgactgggttggcaagaagctgtactggacagactctgagaccaaccacattgaggttgccaacctcaacgggacgtcccgtaaggttctcttctggcaggaccttgaccagccaagggccattgccctggatcctgcacatgggtagggctcagattttctccccctcctatggggatgcatggggaacaaga Alignment from GeneWise CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG agctgatttctgtcctgcatagccatccggttttgatgtctattccccagCCTCACCAATCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCCGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAAAACATTGTCATCTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACAGACTCTGAGACCAACCACATTGAGGTTGCCAACCTCAACGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGGgtagggctcagattttctccccctcctatggggatgcatggggaacaaga #### Ltbp3_ID1250_2 --> 2 - 1 Original Alignment tgGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAg tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagtaGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAggtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg Alignment from CESAR tgGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAg tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagtaGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAggtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg Alignment from Spaln_aa2Genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagTAGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg Alignment from Spaln_nt2Genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagTAGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg Alignment from Pairagon TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagTAGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg Alignment from Exonerate_protein2genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagTAGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg Alignment from Exonerate_coding2genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagTAGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg Alignment from GeneWise TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG tctgtttgtccctgcaagaaaccatgacctaaaacttaacttgattacagTAGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCCGCTGCAGGAACTGGAGCTGGCACTGGGAGTTTAGGCCCCGGTCTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCGCCCCTTGCCCCAGAAGGAGAATCTGTGGCTAGCAAACACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGTCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagaggagaagagcaaccccaaaactattaaagaactattaattgggg #### Ltbp3_ID1257_9 --> 2 - 0 Original Alignment gaGTGACCATGGATCCA ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtaggaGTGACCATGGATCCAgtaagggaggaagccccagcagagggggggggagacagaggggggaaggc Alignment from CESAR gaGTGACCATGGATCCA ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtaggaGTGACCATGGATCCAgtaagggaggaagccccagcagagggggggggagacagaggggggaaggc Alignment from Spaln_aa2Genome GAGTGACCATGGATCCA ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtagGAGTGACCATGGATCCAgtaagggaggaagccccagcagagggggggggagacagaggggggaaggc Alignment from Spaln_nt2Genome GAGTGACCATGGATCCA ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtagGAGTGACCATGGATCCAgtaagggaggaagccccagcagagggggggggagacagaggggggaaggc Alignment from Pairagon GAGTGACCATGGATCCA ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtagGAGTGACCATGGATCCAgtaagggaggaagccccagcagagggggggggagacagaggggggaaggc Alignment from Exonerate_protein2genome GAGTGACCATGGATCCA ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtagGAGTGACCATGGATCCAgtaagggaggaagccccagcagagggggggggagacagaggggggaaggc Alignment from Exonerate_coding2genome ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtaggagtgaccatggatccagtaagggaggaagccccagcagagggggggggagacagaggggggaaggc Alignment from GeneWise ctgcttaaccttctgttcggacactgatacttggtcatatttttctgtaggagtgaccatggatccagtaagggaggaagccccagcagagggggggggagacagaggggggaaggc #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagacGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagacGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Exonerate_coding2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from GeneWise ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgttgttttc Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgtcaccttg Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgttgttttc Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgttgttttc Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgttgttttc Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgttgttttc Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGGTATGTGTCAATTGGCAGAAGGGT---CATGgtcagggttatacgttgtt Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactggatgcttctccactccgcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCGACTGCCAGCGAGGCAGCTGAACTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTGgtatgtgtcaattggcagaagggtcatggtcagggttatacgttgttttc #### Map3k11_ID1201_2 --> 2 - 2 Original Alignment ttCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGag cacacacttcaagttggcacccctactaattttcctccttttcactttagtcCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGaggtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag Alignment from CESAR ttCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGag cacacacttcaagttggcacccctactaattttcctccttttcactttagtcCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGaggtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag Alignment from Spaln_aa2Genome TTCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAG cacacacttcaagttggcacccctactaattttcctccttttcactttagTCCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAGgtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag Alignment from Spaln_nt2Genome TTCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAG cacacacttcaagttggcacccctactaattttcctccttttcactttagTCCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAGgtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag Alignment from Pairagon TTCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAG cacacacttcaagttggcacccctactaattttcctccttttcactttagTCCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAGgtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag Alignment from Exonerate_protein2genome TTCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAG cacacacttcaagttggcacccctactaattttcctccttttcactttagTCCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAGgtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag Alignment from Exonerate_coding2genome TTCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAG cacacacttcaagttggcacccctactaattttcctccttttcactttagTCCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAGgtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag Alignment from GeneWise TTCTGTTGCTGCAGCCCATCGAGGGTGACGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAG cacacacttcaagttggcacccctactaattttcctccttttcactttagTCCTTTTGCTGCAGCCCATTGAGGGTGACGACATGGAACACAAGACGCTAAAGATTACTGACTTTGGCCTTGCCCGAGAGTGGCACAAAACCACCCAGATGAGTGCTGCGGGCACCTATGCTTGGATGGCACCTGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCAGCGACGTCTGGAGgtagggctaatgtttggactgaagagtgtggggccccagagggtgagaag #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGggtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGggtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaaccttaactcttattgtctctttcagGAACTACTTAGTCGGGAGGAGGAACTGACACGGGCTGCCCGTGTGCAGCGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAGCGTGAGCTAACGCTGCTACTGCAGCAGGTGGACCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTTCAAGTGGAGCAAACTTCGAGCAAGGGATGGTGGAGAACGCATCAGCATGCCCCTGGgtaggggctggggcttcaatgcctgcctgcaatttgttattgttggtggc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagcaGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACtggtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagcaGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACtggtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagtaaatgtggccctgggtcaatagtagccttccttttatagCAGACTTCGGGGTGTCAGGCGAGGCGACAGCATCCGTTGCCAAGAGACATTCTTTCATTGGCACTCCATACTGgtaagttggtccctggcaatgggtaaagggcacaaggagaggacacctgg #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacaggATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGaggtaagcctagcacttgccctttacctgttcccctgatgatccttgacgtc Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacaggATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGaggtaagcctagcacttgccctttacctgttcccctgatgatccttgacaac Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGAGgtaagcctagcacttgccctttacctgttcccctgatgatccttgacgtc Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGAGgtaagcctagcacttgccctttacctgttcccctgatgatccttgacgtc Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGAGgtaagcctagcacttgccctttacctgttcccctgatgatccttgacgtc Alignment from Exonerate_protein2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGAGgtaagcctagcacttgccctttacctgttcccctgatgatccttgacgtc Alignment from Exonerate_coding2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGAGgtaagcctagcacttgccctttacctgttcccctgatgatccttgacgtc Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcacaaggagaggacacctggccttcgcccaaccctgttttcctacagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGTGATGTCTGGGCCTTGGGTATCACTACGATTGAATTGAGTGAGCTGCAACCTCCACTGTTCCACCTGCACCCCATGAGgtaagcctagcacttgccctttacctgttcccctgatgatccttgacgtc #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAggtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAggtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG accagttgtccctgagggagtaactggactcaccctccttctgaccccagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtatcctgctgaattgtcgccatccaaagcacatgttggattgatgttta #### Mark2_ID2113_8 --> 0 - 0 Original Alignment GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt Alignment from CESAR GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt Alignment from Spaln_aa2Genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt Alignment from Spaln_nt2Genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt Alignment from Pairagon GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt Alignment from Exonerate_protein2genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt Alignment from Exonerate_coding2genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt Alignment from GeneWise GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG atttaaacttctaacatgagactgtattcacatcctcttttgttttgcagGCAGAAAACCTGCTCCTGGATGCTGATATGAACATTGAGATTGCAGACTTTGGCTTTAGCAACAAATTCACCTTTGGGAACGAACTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAGCTTTTCCAGGGCAAGAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACAGAACCTCATGgtaaaatgaagtgaaggcatcaatcattttacctgtcatttcctttaagt #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcaggaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from CESAR gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcaggaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Pairagon GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ctgccctcacccactgtactcactgtcctttcaaactctcctcccctcagGAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtctgcgtgtctccactctcggctgtagactcagcatggggatatggcgc #### Mark2_ID2120_2 --> 0 - 0 Original Alignment CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact Alignment from CESAR CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact Alignment from Spaln_aa2Genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact Alignment from Spaln_nt2Genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact Alignment from Pairagon CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact Alignment from Exonerate_protein2genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact Alignment from Exonerate_coding2genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact Alignment from GeneWise CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG gtgatgccttcccttctttgtcttcttcatttccttctcccaacatttagCCCACCTTAGGACACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTGCAGGGCCGCAACTCAGCCACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCTAAGGTGAAGTTGGCCCGGCACATCCTGACAGGGAAAGAGgtacgtactggggtcagggtattacattcccagcatgcagtgctgtgact #### Mbl2_ID6423_2 --> 2 - 1 Original Alignment gtCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAg aaagcacagaaccattaatattcacttatgatctctttctctgtactcaggtCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAggtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa Alignment from CESAR gtCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAg aaagcacagaaccattaatattcacttatgatctctttctctgtactcaggtCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAggtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa Alignment from Spaln_aa2Genome GTCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAG aaagcacagaaccattaatattcacttatgatctctttctctgtactcagGTCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAGgtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa Alignment from Spaln_nt2Genome GTCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAG aaagcacagaaccattaatattcacttatgatctctttctctgtactcagGTCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAGgtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa Alignment from Pairagon GTCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAG aaagcacagaaccattaatattcacttatgatctctttctctgtactcagGTCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAGgtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa Alignment from Exonerate_protein2genome GTCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAG aaagcacagaaccattaatattcacttatgatctctttctctgtactcagGTCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAGgtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa Alignment from Exonerate_coding2genome GTCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAG aaagcacagaaccattaatattcacttatgatctctttctctgtactcagGTCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAGgtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa Alignment from GeneWise GTCAAGGGCTCAGAGGCTTGCAAGGCCCTCCTGGAAAAGTAGGACCTACAGGACCCCCAGGGAATCCGGGGTTAAAAGGAGCAGTGGGACCGAAAGGAGACCGTGGGGACAGAGCAG aaagcacagaaccattaatattcacttatgatctctttctctgtactcagGTCAAGGGCTCAGAGGCTTGCAAGGCCCCCCTGGAAAAGTAGGACCCACAGGACCCCCCGGGAATCCAGGGTTAAAAGGGGAAGTGGGACCTAAAGGAGACCGTGGGGACAGAGCAGgtaggcagttcatttcagaatgtctgggtcaatgacactgcggtatagaa #### Mbl2_ID6424_3 --> 2 - 1 Original Alignment aaTTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACt actgcttagcttctcatactcactctgcttctctctccttatgtccccagaaTTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACtgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg Alignment from CESAR aaTTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACt actgcttagcttctcatactcactctgcttctctctccttatgtccccagaaTTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACtgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg Alignment from Spaln_aa2Genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT actgcttagcttctcatactcactctgcttctctctccttatgtccccagAATTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACTgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg Alignment from Spaln_nt2Genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT actgcttagcttctcatactcactctgcttctctctccttatgtccccagAATTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACTgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg Alignment from Pairagon AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT actgcttagcttctcatactcactctgcttctctctccttatgtccccagAATTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACTgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg Alignment from Exonerate_protein2genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT actgcttagcttctcatactcactctgcttctctctccttatgtccccagAATTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACTgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg Alignment from Exonerate_coding2genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT actgcttagcttctcatactcactctgcttctctctccttatgtccccagAATTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACTgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg Alignment from GeneWise AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT actgcttagcttctcatactcactctgcttctctctccttatgtccccagAATTTGATACTAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAGCTGAGAGCCCTGAGAAACTgtatgtatccgccctgggaggagtttttgctgctcccaggaacatatatg #### Mgea5_ID9586_12 --> 0 - 0 Original Alignment CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc Alignment from CESAR CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc Alignment from Spaln_aa2Genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc Alignment from Spaln_nt2Genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc Alignment from Pairagon CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc Alignment from Exonerate_protein2genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc Alignment from Exonerate_coding2genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc Alignment from GeneWise CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG gatgggtgcctactcaacactaatctgtcatggcccctctctcttggcagCGTTTGCTGCCAATTGATGGAGCAAATGATCTTTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGgtaagggtgtttccactagctttatggttctgtgtatgttcatcacttcc #### Mgea5_ID9592_9 --> 2 - 0 Original Alignment gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatccaatttgtttgttgctgtcctctgttctttttttttatctttccaggtAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtaagtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca Alignment from CESAR gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatccaatttgtttgttgctgtcctctgttctttttttttatctttccaggtAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtaagtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca Alignment from Spaln_aa2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAATAG aatccaatttgtttgttgctgtcctctgttctttttttttatctttccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAGTAAgtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca Alignment from Spaln_nt2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatccaatttgtttgttgctgtcctctgttctttttttttatctttccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtaagtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca Alignment from Pairagon GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatccaatttgtttgttgctgtcctctgttctttttttttatctttccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtaagtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca Alignment from Exonerate_protein2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatccaatttgtttgttgctgtcctctgttctttttttttatctttccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtaagtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca Alignment from Exonerate_coding2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatccaatttgtttgttgctgtcctctgttctttttttttatctttccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtaagtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca Alignment from GeneWise GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatccaatttgtttgttgctgtcctctgttctttttttttatctttccagGTAGGCAAGTTGCACACAGTGGAGCTAAAACAAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACGTTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGCATGGCCGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGCGGGCCCAAAGGAGCACAGAAGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtaagtgctcatcatctcatcagcagctcttcttggtgctgagaatgcca #### Mlana_ID6335_3 --> 0 - 0 Original Alignment GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag Alignment from CESAR GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag Alignment from Spaln_aa2Genome GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag Alignment from Spaln_nt2Genome GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag Alignment from Pairagon GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag Alignment from Exonerate_protein2genome GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag Alignment from Exonerate_coding2genome GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag Alignment from GeneWise GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattaatagtattattactatcttttctttaaaaaaaatcagGACAAAAGGCGTCATATTGGCATTCAAAAAACCTCAAGCGAAAGATGCTCGTGTGAGTGCCCTGATCACCAGGACAGCCGACTATCTTCTCAGGAGAAATCTCACCAGCCTGTGgtaagtggtagtagccctcaattcaaataaacaaaatttatctctagtag #### Mrpl11_ID769_4 --> 2 - 2 Original Alignment ggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAC---GTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGga tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCT---------TCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGgagtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag Alignment from CESAR ggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGga tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCT---------TCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGgagtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag Alignment from Spaln_aa2Genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagGGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCT---------TCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGAgtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag Alignment from Spaln_nt2Genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGA---AGCACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagGGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTC---------TTCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGAgtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag Alignment from Pairagon GGAAAGAGGTGGCAGGCCTGGTGAGTTTGA---AGCACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagGGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTC---------TTCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGAgtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag Alignment from Exonerate_protein2genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagGGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCT---------TCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGAgtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag Alignment from Exonerate_coding2genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagGGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCT---------TCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGAgtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag Alignment from GeneWise GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctggagaaatgtaatggcacttgaagatttttttcttttttttaatcagGGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCT---------TCTATCATTGGTTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGAgtgagttgcatcttgaaaggaacgcaactaagtttttcatctggtgggag #### Mrpl21_ID20_2 --> 2 - 2 Original Alignment ccTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAgg caacagatcttcacttgtgttacctactaggtcttgttttctttctccagccTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAgggtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg Alignment from CESAR ccTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAgg caacagatcttcacttgtgttacctactaggtcttgttttctttctccagccTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAgggtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg Alignment from Spaln_aa2Genome CCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGG caacagatcttcacttgtgttacctactaggtcttgttttctttctccagCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAGGgtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg Alignment from Spaln_nt2Genome CCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGG caacagatcttcacttgtgttacctactaggtcttgttttctttctccagCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAGGgtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg Alignment from Pairagon CCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGG caacagatcttcacttgtgttacctactaggtcttgttttctttctccagCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAGGgtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg Alignment from Exonerate_protein2genome CCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGG caacagatcttcacttgtgttacctactaggtcttgttttctttctccagCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAGGgtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg Alignment from Exonerate_coding2genome CCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGG caacagatcttcacttgtgttacctactaggtcttgttttctttctccagCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAGGgtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg Alignment from GeneWise CCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGCGCTTCATATCCACAAGG caacagatcttcacttgtgttacctactaggtcttgttttctttctccagCCTCCCTCTGGTCTGCTTCTCGAAGGTTCAATTCACAGAGTGCTTCATATCCACAAGGgtaaccatatcaacatgtgggcttggtgatcttccacttatctgtaaatg #### Mrpl21_ID22_4 --> 2 - 0 Original Alignment agGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagagGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc Alignment from CESAR agGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagagGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc Alignment from Spaln_aa2Genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagAGGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc Alignment from Spaln_nt2Genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagAGGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc Alignment from Pairagon AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagAGGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc Alignment from Exonerate_protein2genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagAGGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc Alignment from Exonerate_coding2genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagAGGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc Alignment from GeneWise AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG gaacctggtgcctgtacaattattcctaatattttaatgttccattttagAGGTTGTGAGGAGGGTGAATGAGCTGATTGCCACAGGGCAGTATGGACGGCTCTTTGCTGTTGTACACTTTGCCAGCCACCACTGGAAGGTGACTGCTGAGGACCTGATTCTAATTGAAAATGGGTTAGATATCAAGTGTGGAGAGAGAATTCGGCTGGAGAAGgtcagtcacaccttgtgttgtgggctcagagactccagcttctagtgagc #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg #### Ms4a10_ID3083_4 --> 0 - 0 Original Alignment AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc Alignment from CESAR AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc Alignment from Spaln_aa2Genome AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc Alignment from Spaln_nt2Genome AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc Alignment from Pairagon AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc Alignment from Exonerate_protein2genome AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc Alignment from Exonerate_coding2genome AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc Alignment from GeneWise AAGGTTCTCTGTGTGATAGCCAACGTTATCAGCTTGTTCTGCGCACTGGCCGGCTTCTTTGTCATTGCCAAGGACCTCTTCCTGGAGGGTCCTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACA tggattactaactttggccaccagctttcatatcccggcttgtttctcagAAGGTTCTCTGTGTGATAGCCAATGTTATCAGCTTGTTCTGTGCACAGGCTGGCTTCTTTGTCATTGCCAAGGATCTCTTCCTAGAGGGTCGTTTTCCATGGCCAATCTGGAGACCATACCCTGAACCCACAgtaagtctgcctcccctcatgggtcctctcagtccagggaggaaactggc #### Ms4a13_ID3144_3 --> 0 - 0 Original Alignment TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg Alignment from CESAR TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg Alignment from Spaln_aa2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg Alignment from Spaln_nt2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg Alignment from Pairagon TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg Alignment from Exonerate_protein2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg Alignment from Exonerate_coding2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg Alignment from GeneWise TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ttgctgagtgcccttcaacaagtttctagctatacccaattttcttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATGgtttggcgaaatgtggtgggatgttcctagtatgcactttcacaaaactg #### Ms4a18_ID3101_4 --> 0 - 0 Original Alignment GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca Alignment from CESAR GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca Alignment from Spaln_aa2Genome GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca Alignment from Spaln_nt2Genome GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca Alignment from Pairagon GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca Alignment from Exonerate_protein2genome GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca Alignment from Exonerate_coding2genome GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca Alignment from GeneWise GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG aaggatggaatgctgtcccaaatccccttaacctccgttctcccactcagGTGAATAGTAGCATTGGTATGAATGTTGTTTGCTCCATCTTCTCCTTGACTGGCATCATCATTATCATCGTACAGTTGTCCATTTACCCGAGTGAAATTAGTCCTCTGATGgtgagaataaaaatggaccagtccagatgcttcttacagaagcacttaca #### Ms4a2_ID3239_6 --> 0 - 0 Original Alignment GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact Alignment from CESAR GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact Alignment from Spaln_aa2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact Alignment from Spaln_nt2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact Alignment from Pairagon GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact Alignment from Exonerate_protein2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact Alignment from Exonerate_coding2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact Alignment from GeneWise GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG gtgggcatatactgtgatgttccctttttcaacgccgttttccccctcagGAACTGGTATTGATGATGCTGTTTCTCACCATCCTGGCTTTTTGCAGTGCTGTATTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAGgtacagagaatattgactagcatacattggagaatttgtgttttgctact #### Ms4a2_ID3241_4 --> 0 - 0 Original Alignment TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt Alignment from CESAR TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt Alignment from Spaln_aa2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt Alignment from Spaln_nt2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt Alignment from Pairagon TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt Alignment from Exonerate_protein2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt Alignment from Exonerate_coding2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt Alignment from GeneWise TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattttgatcactgtctgtttctgtttgtaatagTTTGTTTTGGCTGGATTTTTGTCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtttagtgctcaccactttgttcatgcctccaaagtgagaaagcaaagtt #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagtGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagtGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagggggttagaagactcttagaagggtttcctgtcttgtttcccagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAAAAAGAATTGGAGTTCCTGGGAgtaattgcctggcttttattcccagcccaaaatgctgcctagctctagga #### Ms4a4b_ID3191_5 --> 0 - 0 Original Alignment GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg Alignment from CESAR GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg Alignment from Spaln_aa2Genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg Alignment from Spaln_nt2Genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg Alignment from Pairagon GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg Alignment from Exonerate_protein2genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg Alignment from Exonerate_coding2genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg Alignment from GeneWise GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatatcccttgtgatgaatcggcccttactagctctcccttctcagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTCGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtaagtagcagttcctgtttggtgatggttagaaggtctctatcgttctg #### Ms4a4d_ID3223_3 --> 0 - 0 Original Alignment TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact Alignment from CESAR TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact Alignment from Spaln_aa2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact Alignment from Spaln_nt2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact Alignment from Pairagon TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact Alignment from Exonerate_protein2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact Alignment from Exonerate_coding2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact Alignment from GeneWise TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccgacaatttaaaaatgtttaaccttgatgtgtttcttccttggcagTTCATTTTTTCAGGATCCCTGTCAATTGCAGCCGGAGTGAAACCTACAAAAGCCACAgtaagaatcatggttaattttggtattgaaagggggtaatttcatgtact #### Ms4a4d_ID3224_4 --> 0 - 0 Original Alignment ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac Alignment from CESAR ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac Alignment from Spaln_aa2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac Alignment from Spaln_nt2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac Alignment from Pairagon ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac Alignment from Exonerate_protein2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac Alignment from Exonerate_coding2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac Alignment from GeneWise ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacacattattgataacatctgcttttgtctccacagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTAATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCACCgtaaaaattaactctgactgtggcatgccgtgtagaaggcaagaggacac #### Ms4a8a_ID3115_5 --> 0 - 0 Original Alignment CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc Alignment from CESAR CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc Alignment from Spaln_aa2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc Alignment from Spaln_nt2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc Alignment from Pairagon CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc Alignment from Exonerate_protein2genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc Alignment from Exonerate_coding2genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc Alignment from GeneWise CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagctttgcccttcctcctctcccctcccatctcccattttatttcctagCTGAATGGCAGCATAGACTTGAATATCTTCATCGCCATCTGT------GTGGGCATCATGCTCTTCATCACAGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTACTACCCTCACCAGGAGAACTTGGGTGTGgtaagagtgataaacaaaggtctctaccctcatttctatgcaaccatatc #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgacttatttccctttctccctccagttctctgtttttcctattttaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCcggtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg tatgacttatttccctttctccctccagttctctgtttttcctattttaggaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCcggtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGgtagttgggatgatcagggaggtggcctagggcgcaatggactgaaatct Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCGA-- tatgacttatttccctttctccctccagttctctgtttttcctattttagGAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCCCTCACAGACCGACAGATTGATCAATTTCTTGTGGTGGCCCGGTAgttgggatgatcagggaggtggcctagggcgcaatggactgaaatct #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTtagtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTta atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTtagtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Exonerate_coding2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga #### Mxi1_ID11268_4 --> 1 - 0 Original Alignment aCGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccaggctgtgcatgatatttgtaatttattctagaAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac Alignment from CESAR aCGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccaggctgtgcatgatatttgtaatttattctagaAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac Alignment from Spaln_aa2Genome ACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccaggctgtgcatgatatttgtaatttattctagAAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac Alignment from Spaln_nt2Genome ACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccaggctgtgcatgatatttgtaatttattctagAAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac Alignment from Pairagon ACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccaggctgtgcatgatatttgtaatttattctagAAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac Alignment from Exonerate_protein2genome ACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccaggctgtgcatgatatttgtaatttattctagAAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac Alignment from Exonerate_coding2genome ACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccaggctgtgcatgatatttgtaatttattctagAAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac Alignment from GeneWise ATCTACACACAATGAGTTGGAAAAGAACCGACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATCAAG atgtgtctagtggcatccagGCTGTGCATGATATTTGTAATTTATTCTAGAAGAGCTCACCTGCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCATACAACACTCGGTTTGCTCAACAAAGCCAAAGCACACATTAAGgtaactatcgtccttctatatttgaaccaattccagtgagtgtcatgtac #### Mxi1_ID11271_5 --> 0 - 1 Original Alignment AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAg ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAggtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat Alignment from CESAR AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAg ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAggtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat Alignment from Spaln_aa2Genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAGgtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat Alignment from Spaln_nt2Genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAGgtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat Alignment from Pairagon AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAGgtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat Alignment from Exonerate_protein2genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAGgtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat Alignment from Exonerate_coding2genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAGgtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat Alignment from GeneWise AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ttaccgttctggactggatcacaggtgtcctacagttctgttttttgcagAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCAGAGCGAGgtaagtagctcccacttcctaagcaagacctgagtctcagagtcacagat #### Myof_ID7445_52 --> 1 - 0 Original Alignment cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagcCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa Alignment from CESAR cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagcCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa Alignment from Spaln_aa2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagCCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa Alignment from Spaln_nt2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagCCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa Alignment from Pairagon CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagCCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa Alignment from Exonerate_protein2genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagCCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa Alignment from Exonerate_coding2genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagCCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa Alignment from GeneWise CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tgccagtttcgttcaagagttaacaagattgtgtcccccgcttatcctagCCGCCCAGAAACCTCTTACCTTTGGTTTACAAACCCTTGCAAGACCATGTGCTTCATAGTTTGGCGCCGGTTCAAGTGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTGTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCAgtaaccaaagtgctatggagtgtgatgaatctatggatctacaaccccaa #### Myof_ID7446_51 --> 0 - 2 Original Alignment GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAaa cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAaagtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa Alignment from CESAR GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAaa cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAaagtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa Alignment from Spaln_aa2Genome GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAAA cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAAAgtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa Alignment from Spaln_nt2Genome GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAAA cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAAAgtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa Alignment from Pairagon GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAAA cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAAAgtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa Alignment from Exonerate_protein2genome GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAAA cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAAAgtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa Alignment from Exonerate_coding2genome GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAAA cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAAAgtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa Alignment from GeneWise GGGAAAGTGGAGATGACACTGGAGGTGCTCAACGAGAGGGAGGCCGACGAGAGGCCAGCCGGGAAGGGGCGGAGTGAACCCAACATGAACCCCAAGCTTGACCCACCAAA cattcattgaacatgatgccgcatgtttgctataacgtatccttctacagGGGAAAGTGGAGATGACACTGGTGGTGATCAATGAGAGGGAGGCTGATGAGAGGCCAGCTGGGAAGGGACGGAGTGAATCCAACATGAACCCCAAGCTTGACCCACCAAAgtaggtgccctaatttctttgttctttctccagattgtttcctccccaaa #### Myof_ID7449_49 --> 0 - 1 Original Alignment GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGg caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAggtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc Alignment from CESAR GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGg caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAggtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc Alignment from Spaln_aa2Genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAGgtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc Alignment from Spaln_nt2Genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAGgtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc Alignment from Pairagon GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAGgtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc Alignment from Exonerate_protein2genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAGgtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc Alignment from Exonerate_coding2genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAGgtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc Alignment from GeneWise GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caattaaaagtaagggtgtgcccacaatacttttttttttctttttgaagGAGCATTTCTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTAGgtaaggcttacttttcagtcacaccattaacactgcacatggaattaacc #### Myof_ID7453_46 --> 0 - 2 Original Alignment GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGaa ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGaagtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg Alignment from CESAR GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGaa ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGaagtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg Alignment from Spaln_aa2Genome GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAA ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAAgtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg Alignment from Spaln_nt2Genome GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAA ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAAgtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg Alignment from Pairagon GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAA ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAAgtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg Alignment from Exonerate_protein2genome GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAA ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAAgtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg Alignment from Exonerate_coding2genome GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAA ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAAgtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg Alignment from GeneWise GGGAAACTTCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAA ggtttctcccatgggtgacctcggtctttccactctgcttctcctgacagGGAAAACTCCAGATGTGGGTGGATGTCTTCCCCAAGAGTTTAGGACCACCAGGCCCCCCTTTCAACATCACACCCAGGAAAGCCAAGAAgtgcgtaacctgagaaccctgcatcactggagtgggcactgctccagttg #### Myof_ID7466_36 --> 0 - 1 Original Alignment TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAg tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAggtaagtctataaggcacatctgtattttacagtattatacttcttttttt Alignment from CESAR TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAg tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAggtaagtctataaggcacatctgtattttacagtattatacttcttttttt Alignment from Spaln_aa2Genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtctataaggcacatctgtattttacagtattatacttcttttttt Alignment from Spaln_nt2Genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtctataaggcacatctgtattttacagtattatacttcttttttt Alignment from Pairagon TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtctataaggcacatctgtattttacagtattatacttcttttttt Alignment from Exonerate_protein2genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtctataaggcacatctgtattttacagtattatacttcttttttt Alignment from Exonerate_coding2genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtctataaggcacatctgtattttacagtattatacttcttttttt Alignment from GeneWise TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG tcctgttggatctggaaacaaaagaagacattccaacacccttcccctagTTATTGCCCAAGCAGGAATTGTACATGCCTCCACTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGGCAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCACTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtctataaggcacatctgtattttacagtattatacttcttttttt #### Myof_ID7471_31 --> 2 - 1 Original Alignment gaGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAg gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcaggaGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAggtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt Alignment from CESAR gaGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAg gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcaggaGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAggtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt Alignment from Spaln_aa2Genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcagGAGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAGgtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt Alignment from Spaln_nt2Genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcagGAGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAGgtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt Alignment from Pairagon GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcagGAGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAGgtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt Alignment from Exonerate_protein2genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcagGAGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAGgtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt Alignment from Exonerate_coding2genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcagGAGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAGgtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt Alignment from GeneWise GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagaaaaattctattgactgcatccgtctgtggttaatctatttcagGAGTCTACATTTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCGTTGGACAAAGACAGCTTTTCAGgtacgttgaaaatccctactaccctcttacatggccaggctaggttgggt #### Myof_ID7473_29 --> 0 - 0 Original Alignment GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt Alignment from CESAR GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt Alignment from Spaln_aa2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt Alignment from Spaln_nt2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt Alignment from Pairagon GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt Alignment from Exonerate_protein2genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt Alignment from Exonerate_coding2genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt Alignment from GeneWise GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT gaatagggggaagattattattcatcatatgcatgaattctcttgtgcagGCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCATTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCGCTGCCATCTTTAGACTCGAAGGTGCCCTTgtgagtagaagcaaaaatgtgactggtaatggtgtaaagggagtgtacgt #### Myof_ID7474_28 --> 2 - 0 Original Alignment gcTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacaggcTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac Alignment from CESAR gcTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacaggcTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac Alignment from Spaln_aa2Genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacagGCTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac Alignment from Spaln_nt2Genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacagGCTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac Alignment from Pairagon GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacagGCTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac Alignment from Exonerate_protein2genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacagGCTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac Alignment from Exonerate_coding2genome GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacagGCTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac Alignment from GeneWise GCTGGGAGTATGGGATTACCATTCCTCCTGATAATAAGCCCAAATCCTGGGTTGCAGCAGAAAAGATGTATCACACTCACAGGCGGCGGAGACTGGTCCGGAAACGCAAGAAAGATCTGACACAGACGGCTTCTAGTACCGCAAGG atgtatacaatgtatctcttttgggtcacgcacttgtgccccgcccacagGCTGGGAGTATGGAGTGACCATTCCGCCTGATAATAAGCCCAAATCCTGGGTTGCGGCAGAAAAGATGCATCACACTCACAGGCAACGGAGACTGGTTCGGAAACGCAAGAAAGATCTGACACAGACAGCTTCTAGTACTGCAAAGgtgagaggggtgtttggtgacattcccgaagatgtaggagatagctggac #### Myof_ID7486_16 --> 1 - 1 Original Alignment gGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAg tgaattaaagctataactttgcaggagatagaatttttcattaccaacaggGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAggtaagttacctaaggactggagttaagcagaactctatgcttctagaaga Alignment from CESAR gGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAg tgaattaaagctataactttgcaggagatagaatttttcattaccaacaggGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAggtaagttacctaaggactggagttaagcagaactctatgcttctagaaga Alignment from Spaln_aa2Genome GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG tgaattaaagctataactttgcaggagatagaatttttcattaccaacagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtaagttacctaaggactggagttaagcagaactctatgcttctagaaga Alignment from Spaln_nt2Genome GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG tgaattaaagctataactttgcaggagatagaatttttcattaccaacagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtaagttacctaaggactggagttaagcagaactctatgcttctagaaga Alignment from Pairagon GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG tgaattaaagctataactttgcaggagatagaatttttcattaccaacagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtaagttacctaaggactggagttaagcagaactctatgcttctagaaga Alignment from Exonerate_protein2genome GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG tgaattaaagctataactttgcaggagatagaatttttcattaccaacagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtaagttacctaaggactggagttaagcagaactctatgcttctagaaga Alignment from Exonerate_coding2genome GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG tgaattaaagctataactttgcaggagatagaatttttcattaccaacagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtaagttacctaaggactggagttaagcagaactctatgcttctagaaga Alignment from GeneWise GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG tgaattaaagctataactttgcaggagatagaatttttcattaccaacagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtaagttacctaaggactggagttaagcagaactctatgcttctagaaga #### Myof_ID7490_12 --> 0 - 1 Original Alignment CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGa aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGagtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga Alignment from CESAR CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGa aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGagtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga Alignment from Spaln_aa2Genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga Alignment from Spaln_nt2Genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga Alignment from Pairagon CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga Alignment from Exonerate_protein2genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga Alignment from Exonerate_coding2genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga Alignment from GeneWise CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA aaaacggctcttcctttgcaagtgtgatctttttttcacaatgactgtagCCCGAGAAACAGGACCGTGACAATGACAGTGAAGATGTGGAGAGCAAACTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagtcaagcatgtggtctccaattcagccatgtttga #### Myof_ID7492_10 --> 0 - 1 Original Alignment ATTGATGTTGGATTTGTTTATGATGAACCTg ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCggtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg Alignment from CESAR ATTGATGTTGGATTTGTTTATGATGAACCTg ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCggtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg Alignment from Spaln_aa2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCGgtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg Alignment from Spaln_nt2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCGgtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg Alignment from Pairagon ATTGATGTTGGATTTGTTTATGATGAACCTG ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCGgtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg Alignment from Exonerate_protein2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCGgtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg Alignment from Exonerate_coding2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCGgtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg Alignment from GeneWise ATTGATGTTGGATTTGTTTATGATGAACCTG ctttacaacctattcctgaccctaaaacttcaacatgtattctttcacagATTGATGTTGGCTTTGTTTATGATGAACCCGgtgagaaatgtccctttatcaacttgaagcctcagtcccttctaagtccg #### Myof_ID7494_8 --> 0 - 0 Original Alignment TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGgtatgtgaccagaaacaaagaattttcacccatctattgtccccgctgca Alignment from CESAR TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGgtatgtgaccagaaacaaagaattttcaccgtatctttactttctttgca Alignment from Spaln_aa2Genome TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGgtatgtgaccagaaacaaagaattttcacccatctattgtccccgctgca Alignment from Spaln_nt2Genome TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGgtatgtgaccagaaacaaagaattttcacccatctattgtccccgctgca Alignment from Pairagon TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGgtatgtgaccagaaacaaagaattttcacccatctattgtccccgctgca Alignment from Exonerate_protein2genome TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGgtatgtgaccagaaacaaagaattttcacccatctattgtccccgctgca Alignment from Exonerate_coding2genome TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGgtatgtgaccagaaacaaagaattttcacccatctattgtccccgctgca Alignment from GeneWise TTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGG-------------------------------------------------- cctgagccgctggctaatgtccaccaatctagttgtcttctcttctgcagTTATTTTTCTACAATGTGCACATCACACCCTCTGAGCTCATGGATGAGATCATCAGTATCCGGGTATGTGACCAGAAACAAAGAATTTTCACCCATCTATTGTCCCCGCTGCA #### Myof_ID7498_4 --> 1 - 0 Original Alignment aTTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagaTTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg Alignment from CESAR aTTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagaTTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg Alignment from Spaln_aa2Genome ATTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagATTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg Alignment from Spaln_nt2Genome ATTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagATTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg Alignment from Pairagon ATTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagATTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg Alignment from Exonerate_protein2genome ATTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagATTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg Alignment from Exonerate_coding2genome ATTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagATTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg Alignment from GeneWise ATTAATTGGCACAGCAACTGTCTCCCTGAAGGACCTGATTGGGGACCAGAACAGGTCTTTGCCCTACAAACAGACCTCCCTGCTAAATGAAAAGGGACAAGACACTGGG aacatgtactgtctcatatgccgctacatgtccctatctggtccccacagATTAATTGGCACAGCGAGTGTCTCCCTGCAG---------GGGGACCAGAACAAGTCTTTGCCTTACAAACAGACTTCCCTGCTAAATGAAAAGGGACAAGACACTGGGgtatgtgctcttctatggaaagacagaacaagattgtggaggaaaactgg #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCaggtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCaggtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagcCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagcCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaggtgggggaggtgagcctgcctttcatgtgttcttctttattggacagCCATGCAGGGAGTGAATTTAGTCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCACCTAAACTGGCCAATAAGgtaagtctgtacaagggcaggaggcttcctactcacctgctggttctttc #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gtacattgagtaatcaatggtaccctcagtgtatgttattgccttaacagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaactgtgccaggcaggtgggtgggggtgggggagatgggttgaaggag #### Myrf_ID2728_9 --> 0 - 2 Original Alignment CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCac aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTacgtaaggatccaacactgttggatggttcctggaaagcacagctccgtctt Alignment from CESAR CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCac aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTacgtaaggatccaacactgttggatggttcctggaaagcacagcttctgact Alignment from Spaln_aa2Genome CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCAC aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTACgtaaggatccaacactgttggatggttcctggaaagcacagctccgtctt Alignment from Spaln_nt2Genome CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCAC aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTACgtaaggatccaacactgttggatggttcctggaaagcacagctccgtctt Alignment from Pairagon CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCAC aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTACgtaaggatccaacactgttggatggttcctggaaagcacagctccgtctt Alignment from Exonerate_protein2genome CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCAC aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTACgtaaggatccaacactgttggatggttcctggaaagcacagctccgtctt Alignment from Exonerate_coding2genome CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCAC aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTACgtaaggatccaacactgttggatggttcctggaaagcacagctccgtctt Alignment from GeneWise CTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCAC aaggaattaatgcatctaccctgaggcgccttcctcctttcttctgacagCTAGAGGCCCTGAACCAGTCTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAGGAGGCCCTTCAACCCAGTTACgtaaggatccaacactgttggatggttcctggaaagcacagctccgtctt #### Myrf_ID2736_4 --> 1 - 1 Original Alignment cACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATg ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagcACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATggtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct Alignment from CESAR cACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATg ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagcACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATggtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct Alignment from Spaln_aa2Genome CACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATG ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagCACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATGgtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct Alignment from Spaln_nt2Genome CACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATG ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagCACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATGgtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct Alignment from Pairagon CACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATG ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagCACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATGgtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct Alignment from Exonerate_protein2genome CACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATG ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagCACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATGgtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct Alignment from Exonerate_coding2genome CACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATG ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagCACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATGgtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct Alignment from GeneWise CACACTGCCAGACTCGCCCCCAGACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATG ggatgggagagcttgtgacccaacttttctctctctctctctctctgcagCACACTGCCAGACTCACCGCCAGACTCAGGCTCGGAGGCCTATTCCCCTCAGCAGGTGAATGgtaagacaaccttcaccttggggttcgggctgactgttggtgtgcagcct #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggtctcgtctttttggt Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggttttctctttcatgt Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggtctcgtctttttggt Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggtctcgtctttttggt Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggtctcgtctttttggt Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggtctcgtctttttggt Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggtctcgtctttttggt Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGGTGAGCTCAAGTCCAGGAATGTCAGGGGGGGAAGGTCTCGTCTTTTTGGT #### Naaladl1_ID1450_9 --> 2 - 0 Original Alignment gcACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcaggcACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt Alignment from CESAR gcACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcaggcACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt Alignment from Spaln_aa2Genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcagGCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt Alignment from Spaln_nt2Genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcagGCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt Alignment from Pairagon GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcagGCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt Alignment from Exonerate_protein2genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcagGCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt Alignment from Exonerate_coding2genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcagGCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt Alignment from GeneWise GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG agtctctctgtgtcagaggaccttgtgttttttttttcctttcttatcagGCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTTGGACTGATTGGCTCTACAGAATTTACAGAGgtgagtagcctcatcaagtagggagtcattgaatgaagcggtggtggatt #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagccAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagccAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcagcagagctgtttttctccaatgccagCCAATGCTACTCTCCAGGCCCAGGGAACACCACCTGTACAAAGTGTACTATTCTCTTCAACCAAAGATgtgaggaggtgatgttcaaaggtatagggggggactatgtaatataggtt #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagtCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACaggtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagtCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACaggtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG ctggcacatgagctgctggcttgcagtgctcttctctctcactcctacagTCCTCTGCAGGTTCAAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtaggtctatgctgaaaccctggggaaagggggtggagtggtaacccctc #### Ndufb8_ID9059_2 --> 2 - 2 Original Alignment ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagccTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGgggtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg Alignment from CESAR ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagccTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGgggtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg Alignment from Spaln_aa2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGGGgtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg Alignment from Spaln_nt2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGGGgtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg Alignment from Pairagon CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGGGgtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg Alignment from Exonerate_protein2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGGGgtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg Alignment from Exonerate_coding2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGGGgtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg Alignment from GeneWise CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tcactgggtggggacctaaaaccaagtcgataacttatatttctgaccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCCTATCCTAGGACCCCAGAGGAACGTACCTCAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTACGAGCCATACCCTGACGATGGTATGGGgtaaggggggtggatgacttggtgcacttgttgcaggagcagatgggatg #### Ndufs8_ID191_5 --> 0 - 0 Original Alignment GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc Alignment from CESAR GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc Alignment from Spaln_aa2Genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc Alignment from Spaln_nt2Genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc Alignment from Pairagon GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc Alignment from Exonerate_protein2genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc Alignment from Exonerate_coding2genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc Alignment from GeneWise GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG atttagggagggccagccattatgacagcttatttttttccatgaactagGCCATCACCATTGAGGCAGAGCCAAGAGCCGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATCTACTGTGGTTTCTGCCAGGAGGCCTGCCCTGTTGATGCCATTGTGGAGgttcgtaggctgggtgaagtggctggttctgaggctccagagtagggttc #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcaggaCATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACagtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACa ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcaggaCATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACagtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACAgtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACAgtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACAgtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACAgtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACAgtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga Alignment from GeneWise GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACA ttgggggtcgaggagcagagcttcctggttactgtgggcattgatttcagGACATCTTAATGGACAAAGCCTTCATAGCAGTGCAGTGGCAGCGACATACAgtgggtagccaatattttgaattaagcttgtcagaccattgccacgctga #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcaggtGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcaggtGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG ttccccttcatggtggaaggcccttggcgttgatcctttgccttcttcagGTGTTGACTGGATGAACAAGGTGATAGCCCGATTTGTGAAGGGAGATGCCTGTCCAGCTGAGATTGACTCCCTGTGGGAGATCAGTAAGCAGATAGAAGGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagtaaggccctcctgtctcacaggaagggccgggcaccaacagccca #### Ndufv1_ID277_5 --> 0 - 1 Original Alignment GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGg gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGggtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga Alignment from CESAR GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGg gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGggtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga Alignment from Spaln_aa2Genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga Alignment from Spaln_nt2Genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga Alignment from Pairagon GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga Alignment from Exonerate_protein2genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga Alignment from Exonerate_coding2genome GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga Alignment from GeneWise GTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTGTGGAGAAGAGACGGCACTTATTGAATCCATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTTCCAGCAGATGTGG gctgactctggggtactgtagagctgggctgatgtccccaattcttccagGTAGCTATCCGAGAGGCCTATGAAGCAGGTCTGATTGGCAAGAATGCTTGTGGCTCCGACTATGATTTTGATGTGTTTCTGGTGCGTGGGGCTGGCGCCTACATCTGTGGAGATGAGACAGCACTTATTGAATCAATTGAAGGCAAGCAGGGAAAGCCACGCCTGAAGCCGCCCTTCCCAGCAGATGTGGgtgagtctttgcctagccctgcttctaccatatggctcagcactgtggga #### Ndufv1_ID278_4 --> 1 - 0 Original Alignment gCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtaggCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg Alignment from CESAR gCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtaggCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg Alignment from Spaln_aa2Genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtagGCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg Alignment from Spaln_nt2Genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtagGCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg Alignment from Pairagon GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtagGCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg Alignment from Exonerate_protein2genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtagGCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg Alignment from Exonerate_coding2genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtagGCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg Alignment from GeneWise GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG gaactcgatcctggtgggtgggtatctgacaccctttcctgcatctgtagGCCCAGGTATCTGGTGGTGAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATCATGCGGCATGACTCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCAGGCCATGGGGGCCCGGGCTGCCTATATCTACATACGAGGGGAATTCTACAATGAGGCATCCAATTTGCAGgtaagtacatgaacactggctgatggtgctggcacacctcacctcacatg #### Ndufv1_ID279_3 --> 1 - 2 Original Alignment gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag acaggggccatggcctcagaacagaactttttgtctcttctttatgataggCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCaggtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact Alignment from CESAR gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag tcaggggccatggcctcagaacagaactttttgtctcttctttatgataggCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCaggtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact Alignment from Spaln_aa2Genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG acaggggccatggcctcagaacagaactttttgtctcttctttatgatagGCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAGgtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact Alignment from Spaln_nt2Genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG acaggggccatggcctcagaacagaactttttgtctcttctttatgatagGCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAGgtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact Alignment from Pairagon ------------------------------------------------AGGCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG ACAGGGGCCATGGCCTCAGAACAGAACTTTTTGTCTCTTCTTTATGATAGGCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAGgtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact Alignment from Exonerate_protein2genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG acaggggccatggcctcagaacagaactttttgtctcttctttatgatagGCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAGgtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact Alignment from Exonerate_coding2genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG acaggggccatggcctcagaacagaactttttgtctcttctttatgatagGCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAGgtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact Alignment from GeneWise GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG acaggggccatggcctcagaacagaactttttgtctcttctttatgatagGCTAAAAGACGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAAATCCTGCTGAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGTGGCCGTGGTGGGGCTGGCTTCCCCACGGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAGgtaaggtgaggaagcaatcctagcctctggtcacagcagctctggtcact #### Neurl1a_ID10158_3 --> 0 - 1 Original Alignment ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAggtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg Alignment from CESAR ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAggtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg Alignment from Spaln_aa2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAGgtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg Alignment from Spaln_nt2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAGgtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg Alignment from Pairagon ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAGgtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg Alignment from Exonerate_protein2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAGgtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg Alignment from Exonerate_coding2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAGgtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg Alignment from GeneWise ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG ctgaccagggggggagaggtaagctgtgctcctccttggcttttgaacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGTTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCGCTACCCAAGTATGCCTGCCCTGATCTGGTATCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGACGTCTACAGCCTCACAAGGGGTGTTCAACTGTTAGgtgggttgcttccttatggcccaatagttctatggcccaatagttgcagg #### Neurl1a_ID10162_5 --> 2 - 1 Original Alignment gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg gaaactttttcctttagtcctatggcagatattaaaatctctttttgaaggcTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAggtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt Alignment from CESAR gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg gaaactttttcctttagtcctatggcagatattaaaatctctttttgaaggcTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAggtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt Alignment from Spaln_aa2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcagatattaaaatctctttttgaagGCTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAGgtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt Alignment from Spaln_nt2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcagatattaaaatctctttttgaagGCTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAGgtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt Alignment from Pairagon GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcagatattaaaatctctttttgaagGCTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAGgtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt Alignment from Exonerate_protein2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcagatattaaaatctctttttgaagGCTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAGgtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt Alignment from Exonerate_coding2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcagatattaaaatctctttttgaagGCTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAGgtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt Alignment from GeneWise GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcagatattaaaatctctttttgaagGCTCCACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGGCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCCCTAGGTGGCTCTACAGGAGgtaagtaccaagacccctctgtcggtcaatatacagaactctccagatgt #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gctgatgttgcgtaaggtgcatggggcatagaccttgtgtctaccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGAGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtgagaggtgctgccctgtcctgcagtggcatgatttctgaacagcctca #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagacGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagacGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG cggcagggctgcaacctctccttgtggctatatccatctgtccaccacagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGGTGGCAAGCCTTTGGGGACTTTTCTCCCACAGATGTTCATAAACAGgtatgtaggggctagagcctgtcctggagacagaactatggacatacatt #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tccgggagagtcctggatggcactttagttactctgattctcttttataggtGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAggtgggtgtcaggaatgcttgagggttagcatgcaccagctctctctctct Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tccgggagagtcctggatggcactttagttactctgattctcttttataggtGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAggtgggtgtcaggaatgcttgagggttagcatgcaccactgtgtgtttctg Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccagctctctctctct Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccagctctctctctct Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccagctctctctctct Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccagctctctctctct Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccagctctctctctct Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tccgggagagtcctggatggcactttagttactctgattctcttttatagGTGGCAGCCTTGGCTTTTTCTCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGTGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtgggtgtcaggaatgcttgagggttagcatgcaccagctctctctctct #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAggtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAggtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG agggaaagataggcttaaggtctggatggctgtgttctgtttctcctcagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCAGCCCTGCAGgtgagcttgcagtggtctctggtacctcaatcaagaggtgatatccttag #### Noc3l_ID7656_19 --> 0 - 2 Original Alignment AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGaggtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg Alignment from CESAR AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGaggtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg Alignment from Spaln_aa2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg Alignment from Spaln_nt2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg Alignment from Pairagon AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg Alignment from Exonerate_protein2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg Alignment from Exonerate_coding2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg Alignment from GeneWise AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG atgataatatggttggagaaacagtgaacttcttgcacacttgttcacagAGACATCACCATCTAATTGTGCAAAAGTTTGCAGCACACCTACTTGCTGGGGCACCATCTGAAGGCTCCGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtacactttacccctgtattgatttatgtgcctggtgttgagacctgctg #### Noc3l_ID7669_6 --> 2 - 0 Original Alignment agGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagagGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt Alignment from CESAR agGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagagGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt Alignment from Spaln_aa2Genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagAGGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt Alignment from Spaln_nt2Genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagAGGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt Alignment from Pairagon AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagAGGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt Alignment from Exonerate_protein2genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagAGGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt Alignment from Exonerate_coding2genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagAGGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt Alignment from GeneWise AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT atgagcctagtatgcatttattagcactcttgccctgtgttgtcacccagAGGTCATTGAAGATCCCAGGAAGGAGCTGACCATAGAAGAGCATGTAATTGAGAGAAAGAAGAAACTGCAAGACAAAAAAATACAGATTGCAGCCTTAGCATCTGCTATACTGTCAGATCCAGAGAGTCATgtaaggagttttagttacatgtaaggcgaaatgtgttatagagatatgtt #### Noc3l_ID7672_3 --> 2 - 2 Original Alignment ttAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTag tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagttAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTaggtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt Alignment from CESAR ttAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTag tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagttAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTaggtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt Alignment from Spaln_aa2Genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagTTAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTAGgtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt Alignment from Spaln_nt2Genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagTTAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTAGgtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt Alignment from Pairagon TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagTTAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTAGgtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt Alignment from Exonerate_protein2genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagTTAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTAGgtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt Alignment from Exonerate_coding2genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagTTAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTAGgtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt Alignment from GeneWise TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG tagggaaatgcacagttctaatccttatagccctgtcctcacctgaccagTTAAGAGGATGGAGAGGGAGGAGGACAAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAAGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGGTCTCTCTTCTAGgtaagtgttcacctgagtcatggctgcaattacaaagttctaaatgtcgt #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTggtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTggtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgtgcaggccaacactactcatgcttgtccttttctcttgcagCTGAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGATTGAGGTCTGGTTCAGGCCCAGTTCGGATC---------CATCAGATTGgtaaaaagagagaatcctttactcccaacctgccccagtctcagatccta #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagggTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagggTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc #### Nrxn2_ID1762_13 --> 2 - 2 Original Alignment gaCAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGgg acgttttgtgcaccaattctttcctgatttaaatcccatataacaaataggaCAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGgggtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc Alignment from CESAR gaCAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGgg acgttttgtgcaccaattctttcctgatttaaatcccatataacaaataggaCAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGgggtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc Alignment from Spaln_aa2Genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG acgttttgtgcaccaattctttcctgatttaaatcccatataacaaatagGACAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGGGgtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc Alignment from Spaln_nt2Genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG acgttttgtgcaccaattctttcctgatttaaatcccatataacaaatagGACAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGGGgtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc Alignment from Pairagon GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG acgttttgtgcaccaattctttcctgatttaaatcccatataacaaatagGACAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGGGgtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc Alignment from Exonerate_protein2genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG acgttttgtgcaccaattctttcctgatttaaatcccatataacaaatagGACAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGGGgtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc Alignment from Exonerate_coding2genome GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG acgttttgtgcaccaattctttcctgatttaaatcccatataacaaatagGACAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGGGgtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc Alignment from GeneWise GACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGG acgttttgtgcaccaattctttcctgatttaaatcccatataacaaatagGACAGATGGCAGGAGCCCACACTCAGCTGGAGTTCTACAACATTGAGACAGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCAAACTTTATTGGGCACCTGAGTGGGCTGGTGTTCAACGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATTGTGGCTGATCCCGTCACATTTAAGAGTCGCAGCAGCTACCTGGCATTAGCCACGCTGCAAGCTTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTTTAACTCAGGCAATGGCAACGACTTCATTGTCATCGAGTTGGTCAAGGGgtgagtggatggggaatgtgggcccaccctgatagagcaccaccctggcc #### Nrxn2_ID1773_17 --> 2 - 0 Original Alignment ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagcgGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt Alignment from CESAR ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagcgGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt Alignment from Spaln_aa2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagCGGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt Alignment from Spaln_nt2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagCGGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt Alignment from Pairagon CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagCGGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt Alignment from Exonerate_protein2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagCGGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt Alignment from Exonerate_coding2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagCGGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt Alignment from GeneWise CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT aaagattcactgacactacttcatctcccaggtttcgctttctccgatagCGGGGACCACATACATCTTCAGGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCTAATGACCGGCCCAGTACATGGATGGACCGCTTAGCCATAGGCTTCAGCACACACCAGCGGAGTGCTGTGCTGGTACGAGTGGACAGTGCGTCTGGAGTTGGGGAATTCTTGCAGTTGCGCATTgtatgtattgcaacgcagggcttatcctgccacaatctgagtgtcccatt #### Nrxn2_ID1775_18 --> 0 - 1 Original Alignment GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAg ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAggtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg Alignment from CESAR GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAg ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAggtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg Alignment from Spaln_aa2Genome GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAG ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAGgtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg Alignment from Spaln_nt2Genome GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAG ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAGgtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg Alignment from Pairagon GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAG ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAGgtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg Alignment from Exonerate_protein2genome GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAG ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAGgtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg Alignment from Exonerate_coding2genome GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAG ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAGgtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg Alignment from GeneWise GACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAG ggggatacttgcctcgtccccgttgttgctctgctggtttttcctcttagGACCAGGGAACTGTTGGAGTGATTTTTAATGTGGGCACAGATGACATTACAATTGATGAGCCCAATGCCATTGTGAGTGATGGCAAATATCATGTGGTGCGTTTTACTCGAAGTGGTGGCAATGCCACCTTGCAGGTGGATAGTTGGCCAGTCAATGAGAGGTACCCAGCAGgtgtgtgacacaggtccacagatgaaagctccctcatctattcatgtgtg #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Exonerate_coding2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCACG---TCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCACG---TCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Exonerate_coding2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct Alignment from Exonerate_coding2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT agggctttaggacttccattagtccaggcatgtgtgcttgttttaaccagCCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTTGACACTgtgaatgagaacacagtgtgtacaaggtcatgatccatcatcctcaccct #### Nudt22_ID1972_3 --> 0 - 2 Original Alignment GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCcagtaagccagttcctggacacatgatcctgggtgagatggccagggaagga Alignment from CESAR GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCcagtaagccagttcctggacacatgatcctgggtgagatggccagggaagga Alignment from Spaln_aa2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtaagccagttcctggacacatgatcctgggtgagatggccagggaagga Alignment from Spaln_nt2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtaagccagttcctggacacatgatcctgggtgagatggccagggaagga Alignment from Pairagon GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtaagccagttcctggacacatgatcctgggtgagatggccagggaagga Alignment from Exonerate_protein2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtaagccagttcctggacacatgatcctgggtgagatggccagggaagga Alignment from Exonerate_coding2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtaagccagttcctggacacatgatcctgggtgagatggccagggaagga Alignment from GeneWise GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA acagtcaggctactgagaagtcaacctgcatataatctttttattttcagGTAAACCTTCCACTCCACACCTTGAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATGAGACAAGTGCAGGCAGAGCCAGTGCAGAGTTCTATGTCCAgtaagccagttcctggacacatgatcctgggtgagatggccagggaagga #### Nxf1_ID2350_10 --> 0 - 2 Original Alignment TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCaggtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag Alignment from CESAR TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCaggtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag Alignment from Spaln_aa2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCAGgtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag Alignment from Spaln_nt2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCAGgtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag Alignment from Pairagon TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCAGgtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag Alignment from Exonerate_protein2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCAGgtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag Alignment from Exonerate_coding2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCAGgtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag Alignment from GeneWise TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG tgttcttagtaaggctgttttttccctttttcctccttttatatttacagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTTGGAGACCAGTCCAGCCATATCAGgtaaagtgaagcagttgtctatcctcctggggacaatcacccctggacag #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagccCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagccCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACA---GTATTGTCCTGTTTTATCCTAACAGAAACCTAGAGGTGGGgtgaata Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatttagtcaaagcctacatttggctttcttcatgatcatttctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtattgtcctgttttatcctaacagaaacctagaggtggggtgaatattg #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCTCAATGAAGTCTTCAAGGAAcgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCTCAATGAAGTCTTCAAGGAAcgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCTCAATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCTCAATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCTCAATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Exonerate_protein2genome gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagagtacattactgtgtctatccctcaatgaagtcttcaaggaacgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from Exonerate_coding2genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCTCAATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca Alignment from GeneWise AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG gctctagtagttggaaacctccattgctatgtcttgtccttgtctctgagAGTACATTACTGTGTCTATCCCTCAATGAAGTCTTCAAGGAACgtactaaattttagttctgaacctctgccattatcttagtgttccagcca #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCgggtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCgggtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Exonerate_protein2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from GeneWise -------ACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG gagCTGGCTTACTGTTTTTTGTTTTTCA---------------------GTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag #### Nxf1_ID2359_19 --> 1 - 2 Original Alignment gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa cattatttgtccacttgtttaagattataggcctctccaatgtgttgtaggCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAaagtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag Alignment from CESAR gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa cattatttgtccacttgtttaagattataggcctctccaatgtgttgtaggCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAaagtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag Alignment from Spaln_aa2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgtccacttgtttaagattataggcctctccaatgtgttgtagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAAAgtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag Alignment from Spaln_nt2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgtccacttgtttaagattataggcctctccaatgtgttgtagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAAAgtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag Alignment from Pairagon GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgtccacttgtttaagattataggcctctccaatgtgttgtagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAAAgtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag Alignment from Exonerate_protein2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgtccacttgtttaagattataggcctctccaatgtgttgtagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAAAgtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag Alignment from Exonerate_coding2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgtccacttgtttaagattataggcctctccaatgtgttgtagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAAAgtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag Alignment from GeneWise GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgtccacttgtttaagattataggcctctccaatgtgttgtagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGGTGCAAGCATTTTCCACCCAGTCTGGCATGAACCTTGACTGGTCTCAAAAgtaggtgctggtcctagttatgaggaccaagaggatcatcagacagtgag #### Obfc1_ID10235_2 --> 2 - 1 Original Alignment gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcaggtACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTggtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa Alignment from CESAR gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcaggtACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTggtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa Alignment from Spaln_aa2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcagGTACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTGgtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa Alignment from Spaln_nt2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcagGTACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTGgtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa Alignment from Pairagon GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcagGTACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTGgtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa Alignment from Exonerate_protein2genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcagGTACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTGgtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa Alignment from Exonerate_coding2genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcagGTACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTGgtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa Alignment from GeneWise GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG tttttgcaaggattgcttgcattgtttggcagccctgtttttgtcctcagGTACATATTTTTACAACGGGCATCCGATCAGGCGGGTAGATATCATGGGAGCTGTGATCAGTGTGAAAGAACGAGAGACTTTCTACAGTTATGGTGgtgagtgtgatcctctgagactatttgtacattcagaggcacgttgagaa #### Oosp2_ID3258_2 --> 2 - 0 Original Alignment tgGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagttGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct Alignment from CESAR tgGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagttGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct Alignment from Spaln_aa2Genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagTTGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct Alignment from Spaln_nt2Genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagTTGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct Alignment from Pairagon TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagTTGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct Alignment from Exonerate_protein2genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagTTGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct Alignment from Exonerate_coding2genome TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagTTGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct Alignment from GeneWise TGGATGTAAGTTGTTCTCAGGACTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACACGCACATCAATATGATTTCATATACCCTGTTTCTCACTGTGGCATCAGGACAAAG catcttgcagttaatggacttgacatttcttgttcttttgcccttgtcagTTGATGTAAGTTGTTCTCAAGAGTGGATGACGGTCAGTGTTAGTGCGTTTTCCCAGAACAAAAGAAATCCATATATTTTTGCTGATGAATTATATCTGGGACAGAACTGCCGTGTAACTCAAATACATGCACATCAATATGATTTTGTATACCCTGTTTCTCACTGTGGCATCAGGACAAAGgtaagtactctgtagtgccgtttgtggtagcaacacatgatcttcacgct #### Opalin_ID8090_5 --> 0 - 0 Original Alignment GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg Alignment from CESAR GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg Alignment from Spaln_aa2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg Alignment from Spaln_nt2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg Alignment from Pairagon GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg Alignment from Exonerate_protein2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg Alignment from Exonerate_coding2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg Alignment from GeneWise GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG acatacacttatatatcgcttatttatactattactgtctctgtccacagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCTAAAATATCTGAAgtaccgatgttttgacataatccctcagagtgacttaaaatagggcatgg #### Opalin_ID8091_4 --> 0 - 0 Original Alignment GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta Alignment from CESAR GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta Alignment from Spaln_aa2Genome GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta Alignment from Spaln_nt2Genome GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta Alignment from Pairagon GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta Alignment from Exonerate_protein2genome GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta Alignment from Exonerate_coding2genome GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta Alignment from GeneWise GACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAG ctcattcatgaagaatctggacttgtcttggttacccttccacaccatagGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTATTTACCTTGATCCAGCGAAGAAGAACCATTGATGATGAGCCTGTAGAGgtgagaacgggctctttgggcttcttgggcttcttgcatgtgaatgagta #### Opalin_ID8092_3 --> 0 - 0 Original Alignment ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacattatgttttcttatctgttggtcttttcttcatctcagACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact Alignment from CESAR ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacattatgttttcttatctgttggtcttttcttcatctcagACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact Alignment from Spaln_aa2Genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacattatgttttcttatctgttggtcttttcttcatctcagACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact Alignment from Spaln_nt2Genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacattatgttttcttatctgttggtcttttcttcatctcagACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact Alignment from Pairagon ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacattatgttttcttatctgttggtcttttcttcatctcagACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact Alignment from Exonerate_protein2genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacattatgttttcttatctgttggtcttttcttcatctcagACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact Alignment from Exonerate_coding2genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacattatgttttcttatctgttggtcttttcttcatctcagACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact Alignment from GeneWise ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACGACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA gtggacgacacATTATGTTTTCTTATCTGTTGGTCTTTTCTTCATCTCAGACATCCTCTCCAGTTGTCACTAGTGCCAAAGCCACGgtgaggacatgatctcatggcaattcagttgtttgcaaagatccagaact #### Opalin_ID8093_2 --> 0 - 0 Original Alignment AGTTTTTCACTGAACTTTACACTGCCATCGAATACG ggctgctaattgttcttgcaagttttaaccagtctctcatctttccccagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt Alignment from CESAR AGTTTTTCACTGAACTTTACACTGCCATCGAATACG ggctgctaattgttcttgcaagttttaaccagtctctcatctttccccagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt Alignment from Spaln_aa2Genome AGTTTTTCACTGAACTTTACACTGCCATCGAATACG ggctgctaattgttcttgcaagttttaaccagtctctcatctttccccagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt Alignment from Spaln_nt2Genome AGTTTTTCACTGAACTTTACACTGCCATCGAATACG ggctgctaattgttcttgcaagttttaaccagtctctcatctttccccagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt Alignment from Pairagon AGTTTTTCACTGAACTTTACACTGCCATCGAATACG ggctgctaattgttcttgcaagttttaaccagtctctcatctttccccagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt Alignment from Exonerate_protein2genome ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACG ggctgctaattgttcttgcaagttttaaccagtctctcatctttcccCAGAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt Alignment from Exonerate_coding2genome ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACG ggctgctaattgttcttgcaagttttaaccagtctctcatctttcccCAGAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt Alignment from GeneWise ggctgctaattgttcttgcaagttttaaccagtctctcatctttccccagagtttttcactgaactttacactgccatcaaatacagtaaaaggagtagttagacacacccctgtctctagccaagtgagcaaagt #### Osbp_ID3345_4 --> 0 - 1 Original Alignment GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACggtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc Alignment from CESAR GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACggtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc Alignment from Spaln_aa2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACGgtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc Alignment from Spaln_nt2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACGgtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc Alignment from Pairagon GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACGgtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc Alignment from Exonerate_protein2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACGgtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc Alignment from Exonerate_coding2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACGgtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc Alignment from GeneWise GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG ggggaagtctgactgttgaggcagccattaaccagcattttctttaccagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGAAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGTGCTGGGTCTGGTCACGgtaagtcagttggctgttgcacagctgttgtgggatgaccaagaggtttc #### Osbp_ID3348_7 --> 0 - 0 Original Alignment TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc Alignment from CESAR TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc Alignment from Spaln_aa2Genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc Alignment from Spaln_nt2Genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc Alignment from Pairagon TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc Alignment from Exonerate_protein2genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc Alignment from Exonerate_coding2genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc Alignment from GeneWise TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG agattatttgttctttgtaaccaatggataccacccctgcctccctgcagTACAAGCATCAGCTGGAGGAGACCAAAAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtgcgtccctcagacctgatatcctgataacatcttgttttataacatcc #### Osbp_ID3352_11 --> 0 - 0 Original Alignment TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTA---------GCAAGAAAG aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGGCGAGAAAGgtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat Alignment from CESAR TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGgcgagaaaggtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat Alignment from Spaln_aa2Genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGgcgagaaaggtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat Alignment from Spaln_nt2Genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGgcgagaaaggtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat Alignment from Pairagon TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGgcgagaaaggtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat Alignment from Exonerate_protein2genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGgcgagaaaggtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat Alignment from Exonerate_coding2genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGgcgagaaaggtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat Alignment from GeneWise TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG--------- aactcgggacagtcttcataaaactaatagcagcctgtgtccctccccagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGAGACAAGTGCAATCTTAAATTTGTTCCTTATACCTACTTCTCTCGGGATTTGGCAAGAAAGGCGAGAAAGgtaagtgttttttatttaatctgccctcatgcatgtgcatgtgtgtgtat #### Osbp_ID3353_12 --> 0 - 2 Original Alignment GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTAcc agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTAccgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca Alignment from CESAR GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTAcc agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTAccgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca Alignment from Spaln_aa2Genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACCgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca Alignment from Spaln_nt2Genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACCgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca Alignment from Pairagon GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACCgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca Alignment from Exonerate_protein2genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACCgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca Alignment from Exonerate_coding2genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACCgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca Alignment from GeneWise GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC agataggcggcctgctggtgttgttttattcttttttcttactcttgcagGTGACAGGTGAAGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCGACAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACCgtacgcgtggcatccctgtcttcttttgcatttaacttttgcatggtaca #### Ostf1_ID4426_4 --> 0 - 1 Original Alignment AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATg cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATggtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca Alignment from CESAR AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATg cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATggtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca Alignment from Spaln_aa2Genome AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATG cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATGgtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca Alignment from Spaln_nt2Genome AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATG cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATGgtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca Alignment from Pairagon AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATG cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATGgtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca Alignment from Exonerate_protein2genome AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATG cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATGgtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca Alignment from Exonerate_coding2genome AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATG cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATGgtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca Alignment from GeneWise AGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCGAGCAACTATG cccagatggtttcagatcagttccatgcgttgttctttctttccttgcagAGTGATACCAGCTGGTGGAAAGGGACATGCAAGGGCAGAACAGGACTGATCCCAAGCAACTATGgtgagttgtcagctgaaccaagagcttgctgcttaccaactggcttaaca #### Pacs1_ID873_21 --> 2 - 2 Original Alignment gtGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGgg acaggttaagggtgactacccctggttacaactgcgttgtctcctcacaggtGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGgggttggtttccctcagtctggctaatacctatctgttctattggtgttacg Alignment from CESAR gtGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGgg acaggttaagggtgactacccctggttacaactgcgttgtctcctcacaggtGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGgggttggtttccctcagtctggctaatacctatctgttctattggtgttacg Alignment from Spaln_aa2Genome GTGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGG acaggttaagggtgactacccctggttacaactgcgttgtctcctcacagGTGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGGGgttggtttccctcagtctggctaatacctatctgttctattggtgttacg Alignment from Spaln_nt2Genome GTGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGG acaggttaagggtgactacccctggttacaactgcgttgtctcctcacagGTGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGGGgttggtttccctcagtctggctaatacctatctgttctattggtgttacg Alignment from Pairagon GTGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGG acaggttaagggtgactacccctggttacaactgcgttgtctcctcacagGTGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGGGgttggtttccctcagtctggctaatacctatctgttctattggtgttacg Alignment from Exonerate_protein2genome GTGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGG acaggttaagggtgactacccctggttacaactgcgttgtctcctcacagGTGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGGGgttggtttccctcagtctggctaatacctatctgttctattggtgttacg Alignment from Exonerate_coding2genome GTGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGG acaggttaagggtgactacccctggttacaactgcgttgtctcctcacagGTGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGGGgttggtttccctcagtctggctaatacctatctgttctattggtgttacg Alignment from GeneWise GTGATGGGGACGATTCACCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGG acaggttaagggtgactacccctggttacaactgcgttgtctcctcacagGTGATGGGGATGATTCACCTGTGGTGAGCCTTACTGTGCCCTCTACATCTCCACCCTCAAGCTCAGGCCTGAGCCGAGATGCCACAGCAACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTTGCCATTGTGGGgttggtttccctcagtctggctaatacctatctgttctattggtgttacg #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcaggtTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAggtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcaggtTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAggtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcagGTTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAGgtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcagGTTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAGgtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcagGTTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAGgtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcagGTTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAGgtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcagGTTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAGgtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagttctgtagccaccaacacttcacttgtgttgctattttgtttttcagGTTCTCATCCAGTAGCCAAATACTTAGGTTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCGTGGAGAGATCTATTCAGCCGCTCGGAGCCTCTAGTGTCAGgtaatcacccccagtaggaaccaccaaccggttaggttctagtccccagt #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagcTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAggtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagcTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAggtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagaagaatgctgagacctaatatgatgacctctgttgttccttctccagCTGCAACTGCAACTCATCCATGCCAAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGTTTCCTCATCATTCTCCTAGgtaaggcctgaccattgaggagttctttgttaacagacctggttcctaca #### Pacs1_ID879_15 --> 0 - 2 Original Alignment TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCtagtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac Alignment from CESAR TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCtagtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac Alignment from Spaln_aa2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCTAgtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac Alignment from Spaln_nt2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCTAgtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac Alignment from Pairagon TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCTAgtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac Alignment from Exonerate_protein2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCTAgtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac Alignment from Exonerate_coding2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCTAgtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac Alignment from GeneWise TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA atctgggctttgcctccctatccagcatcatttaatttttctttgggcagTATGTGGCTGAACTGCTTCAGGACCAGAGGAAGCCTGTGGTATGCACATGCTCACCAGTAGAGGTCCAGGCAGTGCTGTCTGCCCTTCTCACCAGAATCCAGCGCTAgtaggtctttttcttagggtgttttgtttccacactgcttcacctgagac #### Pacs1_ID887_7 --> 0 - 0 Original Alignment GACCTATTCTATGAA---GATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa Alignment from CESAR GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa Alignment from Spaln_aa2Genome GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa Alignment from Spaln_nt2Genome GACCTATTCTATGAAGA---TGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa Alignment from Pairagon GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa Alignment from Exonerate_protein2genome GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa Alignment from Exonerate_coding2genome GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa Alignment from GeneWise GACCTATTCTATGAA---GATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG tgagaggccctggggatttcccagtctcttcttctgtatctcttctgtagGACCTATTCTATGAAGAAGATGAAGATCTTCGGAAGGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACCAGGgtgagctacccatgtctagggcatagaacaactcagactcttggtccaaa #### Pacs1_ID891_3 --> 0 - 0 Original Alignment GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag Alignment from CESAR GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag Alignment from Spaln_aa2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag Alignment from Spaln_nt2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag Alignment from Pairagon GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag Alignment from Exonerate_protein2genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag Alignment from Exonerate_coding2genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag Alignment from GeneWise GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG tttcatctgcatgcagtaacaagcattgtataaaacttttctgtttttagGGCTCAAAAAGGATTCTCCATTCCAATGAGATCATCCTTCCAGCCAGTGGTCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAGgtaggcgaagtctaaatagtgcccaaatgtcataactatatgagtgctag #### Papss2_ID6707_3 --> 2 - 0 Original Alignment gtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccaggtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact Alignment from CESAR gtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccaggtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact Alignment from Spaln_aa2Genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact Alignment from Spaln_nt2Genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact Alignment from Pairagon GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact Alignment from Exonerate_protein2genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact Alignment from Exonerate_coding2genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact Alignment from GeneWise GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG ctcctgagttaatcacacatcaccctagctgaccatctggtctcttccagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCATGCCATCCCATGTTACTCTCTGGACGGGGACAATGTCCGTCATGGCTTTAATAAGACCCTGGGATTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCCAGGCTTTCTGCTGATGCTGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtgagtgatttggcccagtgtgggagctggtattgaatcctccctgcact #### Papss2_ID6710_6 --> 0 - 0 Original Alignment AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt Alignment from CESAR AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt Alignment from Spaln_aa2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt Alignment from Spaln_nt2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt Alignment from Pairagon AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt Alignment from Exonerate_protein2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt Alignment from Exonerate_coding2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt Alignment from GeneWise AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG gtattccttggccactctcagcaacaatggttccttctcttgactaacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAGgtaaccgaatgcagactgtcaggaattcgggtttcttagaatctaacatt #### Papss2_ID6714_8 --> 2 - 0 Original Alignment atGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagatGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt Alignment from CESAR atGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagatGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt Alignment from Spaln_aa2Genome ATGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagATGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt Alignment from Spaln_nt2Genome ATGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagATGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt Alignment from Pairagon ATGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagATGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt Alignment from Exonerate_protein2genome ATGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagATGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt Alignment from Exonerate_coding2genome ATGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagATGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt Alignment from GeneWise ATGGAGTCATCAACATGAGTATTCCCATTGTATTGCCCGTTTCTGCGGATGACAAGGCACGGCTCGAAGGGTGCAGCAAATTTGCCTTGATGTACGAAGGTCGGAGGGTCGCTCTATTACAGGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACCCCCATATCAAA tgcctcacgtggtatatccacttatcccattcttcttagttcctatctagATGGAGTAATTAACATGAGTATTCCCATTGTATTACCCATTTCTGCAGATGACAAGGCAAGGATCGAAGGATGCAGCAAATTTGCGTTGATGTACGAAGGTCGGAGGGTTGCTCTATTACAAGACCCTGAATTCTATGAGCATAGGAAAGAGGAGCGCTGTTCTCGTGTGTGGGGAACAGCCACTGCAAAGCACTCCCATATCAAAgtacagctaaaacctttgccaggacttaagaaaacaaaaacaacttttgt #### Papss2_ID6715_9 --> 0 - 1 Original Alignment ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTg cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTggtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa Alignment from CESAR ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTg cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTggtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa Alignment from Spaln_aa2Genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTGgtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa Alignment from Spaln_nt2Genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTGgtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa Alignment from Pairagon ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTGgtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa Alignment from Exonerate_protein2genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTGgtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa Alignment from Exonerate_coding2genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTGgtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa Alignment from GeneWise ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG cacacacactccaaataaaacttaaacagtctcccttacctgctccccagATGGTGATGGAAAGTGGGGATTGGCTAATTGGCGGAGACCTGCAGGTGTTAGAGAGAATAAGGTGGGATGATGGGCTGGACCAATACCGCCTGACACCTCTGGAGCTCAAGCAGAAGTGTAAAGACATGAATGCTGgtgcggattaaggttccagaatatttgttaatatgcacctcaagtgctaa #### Papss2_ID6716_10 --> 2 - 0 Original Alignment atGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagatGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGT---TCAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga Alignment from CESAR atGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagatGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGT---TCAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga Alignment from Spaln_aa2Genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagATGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGT---TCAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga Alignment from Spaln_nt2Genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagATGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGTT---CAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga Alignment from Pairagon ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagATGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGTT---CAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga Alignment from Exonerate_protein2genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagATGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGT---TCAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga Alignment from Exonerate_coding2genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagATGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGT---TCAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga Alignment from GeneWise ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG ttataggcaaccatgattgttaactttggctgcccttctgtttgctacagATGCTGTGTTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGTCATGCCCTTCTCATGCAAGACACTCGCCGCAGGCTCTTAGAGAGAGGTTACAAACACCCGGTCCTCCTGCTCCACCCTCTTGGGGGT---TCAAAGGATGATGATGTACCTCTGGAATGGCGGATGAAACAGCATGCAGCCGTACTGGAGGAAAGGGTCCTTGATCCCAAGTCAACTATTGTTGCTCTCTTTCCATCTCCAATGTTATATGCTGGTCCTACAGAGgtaaggaatcccctgagttggacctaacatgaagaacaccagctagaaga #### Patl1_ID3314_2 --> 0 - 1 Original Alignment TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTg actatataaatgtcttgagaaattagtctacagtgtttcttccttaacagTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTggtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt Alignment from CESAR TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTg actatataaatgtcttgagaaattagtctacagtgtttcttccttaacagTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTggtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt Alignment from Spaln_aa2Genome TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG actatataaatgtcttgagaaattagtctacagtgtttcttccttaacagTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTGgtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt Alignment from Spaln_nt2Genome TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG actatataaatgtcttgagaaattagtctacagtgtttcttccttaacagTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTGgtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt Alignment from Pairagon TCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG actatataaatgtcttgagaaattagtctacagtgtttcttccttaacagTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTGgtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt Alignment from Exonerate_protein2genome GAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG actatataaatgtcttgagaaattagtctacagtgtttcttccttaaCAGTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTGgtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt Alignment from Exonerate_coding2genome GAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG actatataaatgtcttgagaaattagtctacagtgtttcttccttaaCAGTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTGgtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt Alignment from GeneWise TTCCGCTACGAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTG atgtcttgagaaattagtctacagtgtttcttccttaa---------CAGTCTTTGGAGGATTGTCCCCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAGAAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTCGGGTCAGGTGCAGTTGgtatgtaaggtatttaatactggcctttgttaatctcatcatgtgatttt #### Patl1_ID3323_8 --> 0 - 2 Original Alignment CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCag ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCaggtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt Alignment from CESAR CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCag ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCaggtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt Alignment from Spaln_aa2Genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCAGgtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt Alignment from Spaln_nt2Genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCAGgtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt Alignment from Pairagon CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCAGgtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt Alignment from Exonerate_protein2genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCAGgtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt Alignment from Exonerate_coding2genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCAGgtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt Alignment from GeneWise CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG ggtgacaattgcaagctcttctgtgtcatgcttattatgcttttaattagTTACAGCCTGGACGGATGTCTCCCAGTCAATTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTGCAAGGGCGCATTGGGCAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTAGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGCCCAGGACCACACCTACAAAACCTCAGgtaagtaaccatcccactgatattgatcatcagtgctcccttttagtttt #### Patl1_ID3330_15 --> 1 - 0 Original Alignment gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcaggCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt Alignment from CESAR gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcaggCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt Alignment from Spaln_aa2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt Alignment from Spaln_nt2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt Alignment from Pairagon GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt Alignment from Exonerate_protein2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt Alignment from Exonerate_coding2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt Alignment from GeneWise GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG tggtcttttcatattgcctttattgacatctggactcccaaactttgcagGCCCAGTGATGATCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCCGACATTCTCATGGCAACTGCCAGGAACCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaaggagcatgcagggcaattttcatatattcctcaagttagaaaactt #### Pax2_ID9153_5 --> 2 - 1 Original Alignment ttCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAg ctctaacctcaaccactctactgatagtctccttttctctctaccaacagttCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAggtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg Alignment from CESAR ttCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAg ctctaacctcaaccactctactgatagtctccttttctctctaccaacagttCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAggtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg Alignment from Spaln_aa2Genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctcaaccactctactgatagtctccttttctctctaccaacagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg Alignment from Spaln_nt2Genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctcaaccactctactgatagtctccttttctctctaccaacagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg Alignment from Pairagon TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctcaaccactctactgatagtctccttttctctctaccaacagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg Alignment from Exonerate_protein2genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctcaaccactctactgatagtctccttttctctctaccaacagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg Alignment from Exonerate_coding2genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctcaaccactctactgatagtctccttttctctctaccaacagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg Alignment from GeneWise TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctcaaccactctactgatagtctccttttctctctaccaacagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGCGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtaagtggatgggtgagctctcaccgcccccttgccatgctttttccatg #### Pcgf5_ID7128_4 --> 2 - 1 Original Alignment aaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAg ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagaaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAggtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt Alignment from CESAR aaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAg ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagaaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAggtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt Alignment from Spaln_aa2Genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagAAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt Alignment from Spaln_nt2Genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagAAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt Alignment from Pairagon AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagAAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt Alignment from Exonerate_protein2genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagAAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt Alignment from Exonerate_coding2genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagAAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt Alignment from GeneWise AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG ttttgtatttcagattcctacggttttcaatacttacttttctgtcacagAAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagcgtctgacagctcccagctcctctcatgtctgatttctgctatgt #### Pcgf5_ID7130_6 --> 0 - 0 Original Alignment GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta Alignment from CESAR GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta Alignment from Spaln_aa2Genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta Alignment from Spaln_nt2Genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta Alignment from Pairagon GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta Alignment from Exonerate_protein2genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta Alignment from Exonerate_coding2genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta Alignment from GeneWise GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG gagaattatagcaagtgaaagttttttacacttcctcttgactctgccagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtatgtaaagtcgtatgtatatatgaatttgatgattctgatctatagta #### Pcgf5_ID7131_7 --> 0 - 0 Original Alignment TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg Alignment from CESAR TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg Alignment from Spaln_aa2Genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg Alignment from Spaln_nt2Genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg Alignment from Pairagon TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg Alignment from Exonerate_protein2genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg Alignment from Exonerate_coding2genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg Alignment from GeneWise TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaattttctctgtactaagattaacctttccaattacattagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaagatgctctaatatttacatgcgtgtatacatagtaatagtttactg #### Pcgf6_ID10078_9 --> 0 - 0 Original Alignment GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa Alignment from CESAR GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa Alignment from Spaln_aa2Genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa Alignment from Spaln_nt2Genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa Alignment from Pairagon GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa Alignment from Exonerate_protein2genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa Alignment from Exonerate_coding2genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa Alignment from GeneWise GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG cataggttttgaagtatgaaagcgatcttctgtacctggggtccctacagGTAGATATCATCTGTGGGGACCACTTACTGGAGCGGTACCAAACTCTGCGGGAAATCCGACGTGCTATAGGTGATACAGCAATGCAGgtatgcccctatctcccatatcctggacatatcgaccaatggattagaaa #### Pcgf6_ID10081_6 --> 2 - 2 Original Alignment ctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgg ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTgggtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa Alignment from CESAR ctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgg ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTgggtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa Alignment from Spaln_aa2Genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTGGgtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa Alignment from Spaln_nt2Genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTGGgtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa Alignment from Pairagon CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTGGgtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa Alignment from Exonerate_protein2genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTGGgtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa Alignment from Exonerate_coding2genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTGGgtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa Alignment from GeneWise CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG ctgtgtaaatttgaatcctacatcaggtttgtctctcattggattttcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTACTACTTGAGTTCATTGGgtaagaaacctgttttaccactcacttatttttgtattttcaaagtaaaa #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ctgtgctgcctggggtctttgggtcaacccaccatgttacatcttaccagCCCGTGGACCAGGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagggcccacaggcagcagaagagcccgacaactcattagtacactta #### Pcnxl3_ID1166_27 --> 2 - 0 Original Alignment gcACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttaggcACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag Alignment from CESAR gcACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttaggcACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag Alignment from Spaln_aa2Genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag Alignment from Spaln_nt2Genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag Alignment from Pairagon GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag Alignment from Exonerate_protein2genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag Alignment from Exonerate_coding2genome GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag Alignment from GeneWise GCACATACTGCCAGCAGCGTGAGGTGGAGGCCATCACGGAAGGTGTGGAGGAAGACGAGGGCTGCTGTTGCTGTGAGCCTGGTCACCTGCCCCGGGTCCTGTCCTTCAATGCTGCCTTTGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCCAGCAAGTACGTGCTGGAAGGCTACAGCATCAGTGACAACAACGCAGCCTCCATGCTGCAGGTGTTTGACCTCCGCAAGATCCTCGTCACTTACTATGTCAAG gaaatcagggactatcctagtagctctgagacctcctttccctttcttagGCACATACTGCCAGCAGCGTGAGGTGGATGCTATCACAGAAGGTGTGGAGGAAGATGAGGGCTGCTGTTGCTGTGAGCCCGGTCACCTGCCTCGGGTCCTGTCCTTTAATGCTGCCTATGGGCAGCGCTGGCTGGCCTGGGAGGTGACAGCTAGCAAGTATGTGCTGGAAGGCTATAGAATCAGTGACAACAACGCAGCCTCAATGCTGCAGGTGTTTGACCTACGCAAGATCCTTGTCACTTATTATGTCAAGgtaagtacttagggctgtgaggcagctctaggtgaattgtgactaaacag #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacatgacatccaccattcggttccttcttttacaggaGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGggtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacatgacatccaccattcggttccttcttttacaggaGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGggtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat #### Pcnxl3_ID1176_17 --> 0 - 2 Original Alignment ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCtg gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCtggtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg Alignment from CESAR ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCtg gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCtggtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg Alignment from Spaln_aa2Genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg Alignment from Spaln_nt2Genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg Alignment from Pairagon ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg Alignment from Exonerate_protein2genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg Alignment from Exonerate_coding2genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg Alignment from GeneWise ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG gaggtccagcccagacactacccctggcggcttttcttttcttccttcagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaagttatgcttgaatctctgtgtatacagtgtacactctgtgggtgtg #### Pcnxl3_ID1181_12 --> 1 - 0 Original Alignment gACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG tttcccaacccccctgaaggacttggactgccctgtctcctctactacaggACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAgtgagtcctggttcctcaaatccacaactgtccagggccacctgcttccc Alignment from CESAR gACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG tttcccaacccccctgaaggacttggactgccctgtctcctctactacaggACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAgtgagtcctggttcctcaaatccacaactgtccagggccacctgcttccc Alignment from Spaln_aa2Genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG tttcccaacccccctgaaggacttggactgccctgtctcctctactacagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAgtgagtcctggttcctcaaatccacaactgtccagggccacctgcttccc Alignment from Spaln_nt2Genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG tttcccaacccccctgaaggacttggactgccctgtctcctctactacagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAgtgagtcctggttcctcaaatccacaactgtccagggccacctgcttccc Alignment from Pairagon GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG tttcccaacccccctgaaggacttggactgccctgtctcctctactacagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAgtgagtcctggttcctcaaatccacaactgtccagggccacctgcttccc Alignment from Exonerate_protein2genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG tttcccaacccccctgaaggacttggactgccctgtctcctctactacagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAgtgagtcctggttcctcaaatccacaactgtccagggccacctgcttccc Alignment from Exonerate_coding2genome GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG tttcccaacccccctgaaggacttggactgccctgtctcctctactacagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAgtgagtcctggttcctcaaatccacaactgtccagggccacctgcttccc Alignment from GeneWise GACACGTGGGGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAGAGCG tttcccaacccccctgaaggacttggactgccctgtctcctctactacagGACACGTGGGGTAATGGAGAACATTTTTGGTGTTGGGTTGAGCAGCCTGATTGCCATCCTTGGGTACCTGTTGCTGTTAAAGGGATTCTTCACTGACATC---GTCTTTCAGTTCTGTCTGGTCATTGCCTCCTGTCAGTACTCCCTGCTCAAAGTGAgtcctggttcctcaaatccacaactgtccagggccacctgcttccc #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcagttctgtgagaagggatgcatctctctgcttttttctagGTCCCGCCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACGTTTGACCAGGGTGAGATTGTGGAAAAACGCAACTCTACCATGGGGGAGAAGGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagggatcccaggccatgtcagggattgtcctttctctgggcttgtga #### Pcsk5_ID4232_35 --> 1 - 1 Original Alignment aTATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCg acctgccataggacaactgcaatatgccttcttggttgggcctctcctagaTATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAATGT---ggtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt Alignment from CESAR aTATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAGGGACAG------TGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCg acctgccataggacaactgcaatatgccttcttggttgggcctctcctagaTATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAATGT---ggtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt Alignment from Spaln_aa2Genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG acctgccataggacaactgcaatatgccttcttggttgggcctctcctagATATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAATGT---Ggtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt Alignment from Spaln_nt2Genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGTCC---ACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCA------AGGGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG acctgccataggacaactgcaatatgccttcttggttgggcctctcctagATATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAAT---GTGgtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt Alignment from Pairagon ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGG---TCCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCA------AGGGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG acctgccataggacaactgcaatatgccttcttggttgggcctctcctagATATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAAT---GTGgtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt Alignment from Exonerate_protein2genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG acctgccataggacaactgcaatatgccttcttggttgggcctctcctagATATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAATGT---Ggtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt Alignment from Exonerate_coding2genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG acctgccataggacaactgcaatatgccttcttggttgggcctctcctagATATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAATGT---Ggtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt Alignment from GeneWise ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGTCCA---CGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCA acctgccataggacaactgcaatatgccttcttggttgggcctctcctagATATTATGGAGAAAGCACCAGTGGGAGGTGTGAGAAGTGTGACAAAGGTTGCAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTCTTGTGATACATTTTTTTTCCTCCTTCGCTCCAAGGGACAGGGACAGTGCCACCGTGCTTGCCCTGAGCACTACTATGCAGACCAACATGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAATGTGgtgagtatattgctaggtcttgcatatgaaaatggaaatttgaaaaggtt #### Pcsk5_ID4243_26 --> 1 - 1 Original Alignment gTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCg gtcctagcattccaaaccttctcacagattctgggtttttttttttttaggTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGggtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt Alignment from CESAR gTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCg gtcctagcattccaaaccttctcacagattctgggtttttttttttttaggTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGggtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt Alignment from Spaln_aa2Genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG gtcctagcattccaaaccttctcacagattctgggtttttttttttttagGTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGGgtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt Alignment from Spaln_nt2Genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG gtcctagcattccaaaccttctcacagattctgggtttttttttttttagGTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGGgtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt Alignment from Pairagon GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG gtcctagcattccaaaccttctcacagattctgggtttttttttttttagGTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGGgtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt Alignment from Exonerate_protein2genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG gtcctagcattccaaaccttctcacagattctgggtttttttttttttagGTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGGgtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt Alignment from Exonerate_coding2genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG gtcctagcattccaaaccttctcacagattctgggtttttttttttttagGTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGGgtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt Alignment from GeneWise GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG gtcctagcattccaaaccttctcacagattctgggtttttttttttttagGTTTGAGCGGCATTGCTATAAAGTTTGTCCCGAAAAGACCTTTGGTGTGAAATGGGAATGCAGGGCCTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTCCTCTCGGgtaagattgtaagcaatctggaaaggatttcagagtctttgcatgctggt #### Pcsk5_ID4245_25 --> 2 - 2 Original Alignment atGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACat taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagatGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACatgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag Alignment from CESAR atGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACat taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagatGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACatgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag Alignment from Spaln_aa2Genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag Alignment from Spaln_nt2Genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag Alignment from Pairagon ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag Alignment from Exonerate_protein2genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag Alignment from Exonerate_coding2genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag Alignment from GeneWise ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaaccttttggtgatctcaatgtctggagaatggattctgcttttagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaggcctgggcctctttgttcatgattctgaaaccaatcactgacttag #### Pcsk5_ID4257_24 --> 2 - 1 Original Alignment gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg ataggggtaatcatccattcacctggttcctccatatccttctgttccaggtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGggtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac Alignment from CESAR gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg ataggggtaatcatccattcacctggttcctccatatccttctgttccaggtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGggtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac Alignment from Spaln_aa2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ataggggtaatcatccattcacctggttcctccatatccttctgttccagGTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac Alignment from Spaln_nt2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ataggggtaatcatccattcacctggttcctccatatccttctgttccagGTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac Alignment from Pairagon GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ataggggtaatcatccattcacctggttcctccatatccttctgttccagGTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac Alignment from Exonerate_protein2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ataggggtaatcatccattcacctggttcctccatatccttctgttccagGTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac Alignment from Exonerate_coding2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ataggggtaatcatccattcacctggttcctccatatccttctgttccagGTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac Alignment from GeneWise GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ataggggtaatcatccattcacctggttcctccatatccttctgttccagGTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGgtaaggcattgtttgtataagagatgatgacggggacactggtaagtgac #### Pcsk5_ID4263_20 --> 1 - 1 Original Alignment aTGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATg caactccaaaagcaataaagaggttcagctcactgccttcccctccccagaTGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATggtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat Alignment from CESAR aTGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATg caactccaaaagcaataaagaggttcagctcactgccttcccctccccagaTGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATggtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat Alignment from Spaln_aa2Genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG caactccaaaagcaataaagaggttcagctcactgccttcccctccccagATGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATGgtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat Alignment from Spaln_nt2Genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG caactccaaaagcaataaagaggttcagctcactgccttcccctccccagATGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATGgtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat Alignment from Pairagon ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG caactccaaaagcaataaagaggttcagctcactgccttcccctccccagATGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATGgtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat Alignment from Exonerate_protein2genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG caactccaaaagcaataaagaggttcagctcactgccttcccctccccagATGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATGgtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat Alignment from Exonerate_coding2genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG caactccaaaagcaataaagaggttcagctcactgccttcccctccccagATGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATGgtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat Alignment from GeneWise ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG caactccaaaagcaataaagaggttcagctcactgccttcccctccccagATGTGATAATAGCTGTCTGACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCCATCTGCAAGGATGgtaagtacagctatgtggtctaccctgttagctttgtgctttactatcat #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagggGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGaggtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagggGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGaggtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagGGGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGAGgtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagGGGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGAGgtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagGGGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGAGgtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag Alignment from Exonerate_protein2genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagGGGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGAGgtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag Alignment from Exonerate_coding2genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagGGGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGAGgtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag Alignment from GeneWise GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG tcctggggcttctcttcttttctgattctaagcctatgcgactcttacagGGGCTGGAGCAGATGGATTTATTAACTGCACTGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAGAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAGTCCTGCAAGAGgtaagctcatctactctggccctaacactcaatatgtgaagtccttgtag #### Pcsk5_ID4271_13 --> 1 - 1 Original Alignment gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagaCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAggtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca Alignment from CESAR gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagaCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAggtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca Alignment from Spaln_aa2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagACTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAGgtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca Alignment from Spaln_nt2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagACTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAGgtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca Alignment from Pairagon GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagACTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAGgtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca Alignment from Exonerate_protein2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagACTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAGgtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca Alignment from Exonerate_coding2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagACTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAGgtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca Alignment from GeneWise GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gtcagtgtgtggacatggatagctgatactgatgtgccccctgtccacagACTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCTGGGGATTGGGTCCTCGAAGTTTATGATACACCATCTCAGCTGAGAAACTTTAAGACTCCAGgtaaggaaccagtacaaataaacccacttgtggcataaaacaactgacca #### Pcsk5_ID4301_6 --> 1 - 1 Original Alignment gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg tggtgtgagtggaggatcttactttataagtttcttctcttgatctttaggCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAggtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac Alignment from CESAR gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg tggtgtgagtggaggatcttactttataagtttcttctcttgatctttaggCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAggtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac Alignment from Spaln_aa2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttataagtttcttctcttgatctttagGCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac Alignment from Spaln_nt2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttataagtttcttctcttgatctttagGCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac Alignment from Pairagon GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttataagtttcttctcttgatctttagGCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac Alignment from Exonerate_protein2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttataagtttcttctcttgatctttagGCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac Alignment from Exonerate_coding2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttataagtttcttctcttgatctttagGCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac Alignment from GeneWise GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG tggtgtgagtggaggatcttactttataagtttcttctcttgatctttagGCATGGAACCCGCTGTGCTGGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCACTGTTAGGATCACTTTCAACGCCAAGATTGGAGgtaggagacgcttccagggacatacctgtttttcagaatcctgttcaaac #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAGG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGC-AGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCA--------------------------------------------------- gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGGTAAGTTAGGAAGCCCTCCCCTGGCAGGGAGAGACAGTCTGGGTATTCTG #### Pcx_ID557_7 --> 2 - 0 Original Alignment ggGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagggGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc Alignment from CESAR ggGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagggGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc Alignment from Spaln_aa2Genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc Alignment from Spaln_nt2Genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc Alignment from Pairagon GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc Alignment from Exonerate_protein2genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc Alignment from Exonerate_coding2genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc Alignment from GeneWise GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG gagtcagctgaatgctaggtaaggcttatcccttctcttatctgaaccagGGGACCAGTTTGGGAACATCCTGCACCTGTATGAGCGAGACTGCTCCATCCAGCGTCGACACCAGAAGGTGGTAGAGATCGCCCCTGCCACCCACCTGGACCCCCAACTCCGATCACGTCTTACCAGTGACTCTGTCAAACTTGCCAAGCAGgtaagtacatgttccccagcaacatgagcccatgtttgccaagcgctctc #### Pcx_ID558_8 --> 0 - 2 Original Alignment GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAga tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAgagtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg Alignment from CESAR GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAga tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAgagtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg Alignment from Spaln_aa2Genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAGAgtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg Alignment from Spaln_nt2Genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAGAgtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg Alignment from Pairagon GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAGAgtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg Alignment from Exonerate_protein2genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAGAgtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg Alignment from Exonerate_coding2genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAGAgtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg Alignment from GeneWise GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA tcacagcgaggattaaataacacaacccactatatgtcttactgttttagGTAGGCTATGAGAACGCTGGCACTGTGGAGTTCCTGGTGGATAAGCATGGCAAACACTACTTCATTGAGGTCAATTCCCGCCTGCAGGTAGAGCACACAGTCACTGAAGAGATCACAGAgtgactgcagggcagggtaagaaaggggctcctggaggtggcggccgagg #### Pcx_ID562_11 --> 0 - 1 Original Alignment ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTggtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca Alignment from CESAR ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTggtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca Alignment from Spaln_aa2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca Alignment from Spaln_nt2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca Alignment from Pairagon ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca Alignment from Exonerate_protein2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca Alignment from Exonerate_coding2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca Alignment from GeneWise ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG tcccatcccccccctaagctgcccagcagaccacctttctctacacacagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCGGGCACAGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAGCTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtaggtctgtgctgcccttctctttcctgcagacttgttcttatctccca #### Pdcd11_ID10108_2 --> 0 - 0 Original Alignment GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt Alignment from CESAR GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt Alignment from Spaln_aa2Genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt Alignment from Spaln_nt2Genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt Alignment from Pairagon GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt Alignment from Exonerate_protein2genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt Alignment from Exonerate_coding2genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt Alignment from GeneWise GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gagagtctgggataacaggaattgtctccttctgtttcttctttgtccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGAAAAAGGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCAGTCAAATCTATAAAAGGGAAGTTTGAAATCCTTAGTCTCGAGgtaagacaacatttgctatctcttaacatattctctaagttcaggacgtt #### Pdcd11_ID10109_3 --> 0 - 0 Original Alignment TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc Alignment from CESAR TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc Alignment from Spaln_aa2Genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc Alignment from Spaln_nt2Genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc Alignment from Pairagon TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc Alignment from Exonerate_protein2genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc Alignment from Exonerate_coding2genome TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc Alignment from GeneWise TCCCTATGTGAGGGGATGCGGATTTTGGGCTGTGTGAAGGAGGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACGGCCTCCAAGGGTTTGTGCAAGTGACCGAAGTCTGTGACGCCTACACTCAGAAGCTGAATGAGCAGGTGGCACAAGAAGAACCTCTGGAG cagggagccaagcactccctctatcttgcagtcctttcatcctttcatagTCCCTCTGTGAGGGGATGCAGATTTTGGGCTGTGTGAAGGAAGTGAGTGAGCTGGAGCTGGTGGTCAGCCTTCCCAACAGCCTCCAAGGGTTTGTGAAAGTGACAGAAGTCTGTGATGCCTACACTCAGAAGCTCAATGAGCAGGTGGCACAAGAAGAACCTCTGGAGgtgagtgcagttgggatgcagctcgcactgggatttgcattcagccttgc #### Pdcd11_ID10118_12 --> 0 - 0 Original Alignment GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt Alignment from CESAR GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt Alignment from Spaln_aa2Genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt Alignment from Spaln_nt2Genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCT---TGATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt Alignment from Pairagon GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCT---TGATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt Alignment from Exonerate_protein2genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt Alignment from Exonerate_coding2genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt Alignment from GeneWise GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG ggttgtctcactaagagatgactggttgctgacctgtcttcaccttccagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATTATGACACTGAAAAAAAGTCTTGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCATGGCGTTATCATACGCATCAAGGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaagacttcctgcacaggcctcgtgtggttaatgactgtgaatgcaggt #### Pdcd11_ID10127_21 --> 1 - 0 Original Alignment tGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagtGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc Alignment from CESAR tGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagtGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc Alignment from Spaln_aa2Genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagTGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc Alignment from Spaln_nt2Genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagTGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc Alignment from Pairagon TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagTGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc Alignment from Exonerate_protein2genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagTGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc Alignment from Exonerate_coding2genome TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagTGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc Alignment from GeneWise TGAGTTGAAGGGTAGCTACAGTGCTCTTAATACTCACTCTGAGAGCCCCGTGGAGAAGATCAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAG aagtaagagtgtcccagtggttggcgtactgtgtgtgacgttgtctgcagTGAGTTGAAGGGTAGTTACAGTGCTCTTAAAACTCACTCTGAGAGCCCTGTGGAGAAGATTAGGCAGTACCAGGCTGGGCAGACTGTGACCTGCTTCTTCAAGAAGgtaaggggcagttactacccttactgaggcttttgagcctctttcagagc #### Pdcd11_ID10132_26 --> 1 - 2 Original Alignment gACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAgg agttaggccccagttaactggatgtatggtttgttatcatttttaataaggACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAgggtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc Alignment from CESAR gACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAgg agttaggccccagttaactggatgtatggtttgttatcatttttaataaggACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAgggtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc Alignment from Spaln_aa2Genome GACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAGG agttaggccccagttaactggatgtatggtttgttatcatttttaataagGACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAGGgtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc Alignment from Spaln_nt2Genome GACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAGG agttaggccccagttaactggatgtatggtttgttatcatttttaataagGACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAGGgtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc Alignment from Pairagon GACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAGG agttaggccccagttaactggatgtatggtttgttatcatttttaataagGACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAGGgtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc Alignment from Exonerate_protein2genome GACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAGG agttaggccccagttaactggatgtatggtttgttatcatttttaataagGACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAGGgtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc Alignment from Exonerate_coding2genome GACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAGG agttaggccccagttaactggatgtatggtttgttatcatttttaataagGACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAGGgtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc Alignment from GeneWise GACAAACAGAGAGACAAAAAACAGAATAGAAGATCCAGAAATCAACTCCATTGAGGACGTGAAGGAAGGGCAGCTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGCAGTGTGATCATAGG agttaggccccagttaactggatgtatggtttgttatcatttttaataagGACAAACAGAGAGACAATAAACAGAATAGAAGATCCAGAAATCAATTCCATTGAGGATGTGAAGAAGGGGCAGGTCCTGCGGGGCTATGTGAAATGTGTCCTGCCAAGGAGTGTGATCATAGGgtaagtaaccaagaccacacacagcccttgagcgttagatctggaaaacc #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacaggGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacaggGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG caggcctccagtgcagagctggtgaactggcttgtgttttttatttacagGGAGGAGCAGGAGAAGCTGAATGTGTGGGTGGCCTTGCTAAATCTGGAAAACATGTATGGCTCCCAGGAGTCCTTGACAAAGGTTTTCGAGCAAGCTGTGCAGTACAACGAGTCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtagtgtgttaagatccacacccaacatgccctagatgctagccccttga #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAAcgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAAcgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA------GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag #### Pdcd1lg2_ID6280_2 --> 2 - 1 Original Alignment ctTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAg tcaaaacgttacataaatacaaacaacataactttttttttgtattacagctTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAggtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta Alignment from CESAR ctTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAg tcaaaacgttacataaatacaaacaacataactttttttttgtattacagctTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAggtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta Alignment from Spaln_aa2Genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG tcaaaacgttacataaatacaaacaacataactttttttttgtattacagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta Alignment from Spaln_nt2Genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG tcaaaacgttacataaatacaaacaacataactttttttttgtattacagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta Alignment from Pairagon CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG tcaaaacgttacataaatacaaacaacataactttttttttgtattacagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta Alignment from Exonerate_protein2genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG tcaaaacgttacataaatacaaacaacataactttttttttgtattacagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta Alignment from Exonerate_coding2genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG tcaaaacgttacataaatacaaacaacataactttttttttgtattacagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta Alignment from GeneWise CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG tcaaaacgttacataaatacaaacaacataactttttttttgtattacagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTGTGAGCCTGGAGTGTGATTTTGACCGAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTCGAAAATGATACATCTCTGCAAAGTGAAAGAGCCACCCTGCTCGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAAGTGAGAGACTCTGGGCTGTACCGCTGCCTGGTTATCTGTGGGGCTGCGTGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagtgtccctcatatgcctctctgagtaagggctgtgaaaaaagggta #### Pdcd1lg2_ID6281_3 --> 2 - 1 Original Alignment ctTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGa acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagctTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGagtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga Alignment from CESAR ctTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGa acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagctTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGagtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga Alignment from Spaln_aa2Genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagCTTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGAgtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga Alignment from Spaln_nt2Genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagCTTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGAgtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga Alignment from Pairagon CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagCTTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGAgtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga Alignment from Exonerate_protein2genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagCTTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGAgtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga Alignment from Exonerate_coding2genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagCTTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGAgtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga Alignment from GeneWise CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA acaactgtacagcaatccaaaacaacttccctcctgacctcccttcacagCTTCTTACATGAGGATAGACACTAGGATACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGCCTCTACCAGGTCGCCAGTGTTCTGCGCCTCAAGCCTCAGCCCAGCAGAAACTTTAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGATCCTCTGAgtgagtgtgcctaccatttcctagtcttatcaattggagttcacatggga #### Pdcd4_ID11396_3 --> 2 - 0 Original Alignment gtGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcaggtGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat Alignment from CESAR gtGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcaggtGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat Alignment from Spaln_aa2Genome GTGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcagGTGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat Alignment from Spaln_nt2Genome GTGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcagGTGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat Alignment from Pairagon GTGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcagGTGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat Alignment from Exonerate_protein2genome GTGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcagGTGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat Alignment from Exonerate_coding2genome GTGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcagGTGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat Alignment from GeneWise GTGGTGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGATCCAAACTATGATGACGACCAG attagttcagattttaatatttgtacactccctttttgtccccatttcagGTGGTGCAGGTGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTTGGTGTGAAAGATCCGAACTATGATGATGACCAGgtaagaactattttttttataaattcagtgtctataagatttctaggtat #### Pdcd4_ID11399_6 --> 0 - 2 Original Alignment TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTcg gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTcggtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg Alignment from CESAR TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTcg gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTcggtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg Alignment from Spaln_aa2Genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTCGgtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg Alignment from Spaln_nt2Genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTCGgtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg Alignment from Pairagon TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTCGgtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg Alignment from Exonerate_protein2genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTCGgtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg Alignment from Exonerate_coding2genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTCGgtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg Alignment from GeneWise TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcatattaattcttttatatagccctttctctttctctctgcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTACATGCTCGgtatgtcaggctttgggagtgtgtatttttccgtatgcactcttcactgg #### Pdcd4_ID11403_10 --> 0 - 2 Original Alignment GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAag aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAaggtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt Alignment from CESAR GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAag aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAaggtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt Alignment from Spaln_aa2Genome GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAG aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAGgtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt Alignment from Spaln_nt2Genome GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAG aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAGgtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt Alignment from Pairagon GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAG aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAGgtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt Alignment from Exonerate_protein2genome GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAG aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAGgtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt Alignment from Exonerate_coding2genome GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAG aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAGgtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt Alignment from GeneWise GGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAG aggcaacacattacacagggtaacaggcacctgcccatgtcccaccgcagGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCACACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCCGTGATCTTTGTCCATCAAGgtcagttattcaagtcatcctttctcattgaaaaatgctgaatgaggggt #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc #### Pde6c_ID7534_4 --> 0 - 0 Original Alignment ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac Alignment from CESAR ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac Alignment from Spaln_aa2Genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac Alignment from Spaln_nt2Genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac Alignment from Pairagon ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac Alignment from Exonerate_protein2genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac Alignment from Exonerate_coding2genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac Alignment from GeneWise ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG cttctactcttcctccttctcatcctccctcatgctttttatgttcacagATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACGGTTTCACAAGGCACTGTACACCATCAGGACATACCTGAACTGTGATCGCTACTCCATCGGTCTTCTGGACATGACCAAGGAGAAGgtaagtatattccacctgcctcatatcacccctagctccctagacagtac #### Pde6c_ID7535_5 --> 0 - 0 Original Alignment GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc Alignment from CESAR GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc Alignment from Spaln_aa2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc Alignment from Spaln_nt2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc Alignment from Pairagon GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc Alignment from Exonerate_protein2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc Alignment from Exonerate_coding2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc Alignment from GeneWise GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tgacttgtggataagtctgattaataatacttacatatgtgtatccacagGAATTTTATGACAAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTTCAGATGGCCGGgtgagtgttttgtgtatgatgccaagagactaaagttttcagagggaacc #### Pde6c_ID7547_17 --> 1 - 2 Original Alignment gAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCat ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacaggAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCatgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag Alignment from CESAR gAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCat ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacaggAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCatgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag Alignment from Spaln_aa2Genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacagGAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCATgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag Alignment from Spaln_nt2Genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacagGAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCATgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag Alignment from Pairagon GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacagGAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCATgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag Alignment from Exonerate_protein2genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacagGAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCATgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag Alignment from Exonerate_coding2genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacagGAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCATgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag Alignment from GeneWise GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT ctaaactcattctctgtggaaaaatcatgctcatgtcctgccttctacagGAAGAGAACCATGTTTCAGAAGATTGTCGATACCTGTGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCTGACCCGACCAAAAAGGAAGTCATCATgtgggtagcagaatgttccctcctgaagggaaaaatagcatgtttcatag #### Pdzd8_ID12952_4 --> 0 - 1 Original Alignment GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAggtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac Alignment from CESAR GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAggtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac Alignment from Spaln_aa2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac Alignment from Spaln_nt2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac Alignment from Pairagon GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac Alignment from Exonerate_protein2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac Alignment from Exonerate_coding2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac Alignment from GeneWise GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgtattacttttatatcaatgatttccttaccaataacctttctttttagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTCATTGCTATTGGAGgtgagaacacactgtatagtgtaatatatgtgtacagagaaactagtgac #### Peli3_ID759_3 --> 0 - 0 Original Alignment GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg Alignment from CESAR GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg Alignment from Spaln_aa2Genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg Alignment from Spaln_nt2Genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg Alignment from Pairagon GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg Alignment from Exonerate_protein2genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg Alignment from Exonerate_coding2genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg Alignment from GeneWise GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG cttcacaacttctcttgtcgcctcagagctctttctgattgttccctcagGCCCTGAGTAACCGAGGCCAACACAGCATCTCATTCACACTGTCCCGAAGTCACTCAGTCATAGTGGAGTACGCGCATGACAGTGACAAAGACATGTTTCAAgtgagtccagccccatgacctttgctctgcagatgttcaggaccaggtgg #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt #### Pi4k2a_ID8403_6 --> 0 - 1 Original Alignment GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAtgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt Alignment from CESAR GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAtgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt Alignment from Spaln_aa2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt Alignment from Spaln_nt2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt Alignment from Pairagon GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt Alignment from Exonerate_protein2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt Alignment from Exonerate_coding2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt Alignment from GeneWise GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT ttattgtagagggcctgcctcctgcctgtttccttccaatatttttttagGACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTAGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCATgtgtgtccaagagcactgggctttgcctggtttgcagctgcagtagggtt #### Pik3ap1_ID8154_15 --> 2 - 0 Original Alignment gcAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctaggcAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga Alignment from CESAR gcAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctaggcAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga Alignment from Spaln_aa2Genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctagGCAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga Alignment from Spaln_nt2Genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctagGCAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga Alignment from Pairagon GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctagGCAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga Alignment from Exonerate_protein2genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctagGCAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga Alignment from Exonerate_coding2genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctagGCAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga Alignment from GeneWise GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggagtttcatacctcactccctaagttgttttttacattcctagGCAGCACGAGTAACCGGTCAAGTACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAATGATgtaagggagaggactccctgtctgtctgtctagtcttaggggtcatctga #### Pik3ap1_ID8163_6 --> 0 - 1 Original Alignment GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAa gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAagtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact Alignment from CESAR GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAa gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAagtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact Alignment from Spaln_aa2Genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact Alignment from Spaln_nt2Genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact Alignment from Pairagon GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact Alignment from Exonerate_protein2genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact Alignment from Exonerate_coding2genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact Alignment from GeneWise GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA gtacatgctagctagattttaaatcaaattttctctgttttgattttcagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAACATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtaggatagcaggtcatttggtcacagacggtatggcctgccacacaact #### Pik3ap1_ID8166_3 --> 2 - 0 Original Alignment atTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagatTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt Alignment from CESAR atTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagatTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt Alignment from Spaln_aa2Genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagATTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt Alignment from Spaln_nt2Genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagATTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt Alignment from Pairagon ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagATTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt Alignment from Exonerate_protein2genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagATTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt Alignment from Exonerate_coding2genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagATTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt Alignment from GeneWise ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccatttccagtgttctactgtcccacagATTCTGGCTGTGACTCAGTAACTGACACAGAGCCTGAGGATGAGAGAGAGCTTCCCTTCTCAAAGCAGACAAATCTGCCTCCGGAGATATCACCTGGGAACCTAATGGTTGTTCAGCCAGACCGCATTCGCTGTGGGgtaaagctggttatctggtacatctccatcagggcatcgactttcctagt #### Pik3ap1_ID8173_2 --> 2 - 1 Original Alignment ggTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAg agaaggagctggcattaatgagctttttgttctgtgctgctctctctcagggTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAggtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga Alignment from CESAR ggTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAg agaaggagctggcattaatgagctttttgttctgtgctgctctctctcagggTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAggtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga Alignment from Spaln_aa2Genome GGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG agaaggagctggcattaatgagctttttgttctgtgctgctctctctcagGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAGgtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga Alignment from Spaln_nt2Genome GGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG agaaggagctggcattaatgagctttttgttctgtgctgctctctctcagGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAGgtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga Alignment from Pairagon GGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG agaaggagctggcattaatgagctttttgttctgtgctgctctctctcagGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAGgtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga Alignment from Exonerate_protein2genome GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG agaaggagctggcattaatgagctttttgttctgtgctgcTCTCTCTCAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAGgtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga Alignment from Exonerate_coding2genome GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG agaaggagctggcattaatgagctttttgttctgtgctgcTCTCTCTCAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAGgtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga Alignment from GeneWise GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG agaaggagctggcattaatgagctttttgttctgtgctgcTCTCTCTCAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCAGAGGAATGGTGTCAGTACCTACAGGATCTTTTTGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACACAGACATATGAACTGGTTCCAGATGCATCTTTCTCTGCCCAGGACTTGTGGGTCTTCAGGGACGCACAATGTGTGCTGGTGCTACTATCAGTGGGGCAGGTAGGATGCTTCAGCCAGCCAGGACTGCTCCCAATGCGGCAGCGTGCCTGCCATCCGCCACAGCGTGTGGTGCGGCTACTGTGTGGGGTGCAGCCAGGTGATGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGACGATGAGCCAGAGACGTACCTGGCACCTGTGAGGAAGGCTATTTCTGAAGgtgggcgcttcaacaatgcgaagaaaagagagttcaacacaaattacaga #### Pitpnm1_ID305_2 --> 0 - 2 Original Alignment AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACAcg cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACAcggtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt Alignment from CESAR AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACAcg cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACAcggtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt Alignment from Spaln_aa2Genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt Alignment from Spaln_nt2Genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt Alignment from Pairagon AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt Alignment from Exonerate_protein2genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt Alignment from Exonerate_coding2genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt Alignment from GeneWise AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG cagaacttaagctaagggctggggtccctgacctacctgtatctgtgtagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGAAGCGGTGTGGAGGTCCTGGCGAACCGGCACTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACGAGGTGTACCATGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtgagcgtgtgagactgacacagacttgagacccgaaaggaagatgtgtt #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcaggTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTggtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gacttgagacccgaaaggaagatgtgttatcctaattccattttcttcagGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg Alignment from GeneWise ------------------------------------------------CGGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG GACTTGAGACCCGAAAGGAAGATGTGTTATCCTAATTCCATTTTCTTCAGGTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAAATAGAGACCTACTACTTGCCAGATGGGGGGCAGCAACCTAATGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTTGgtaattccttctggggtcactgtgtttcagcactaagtgaacccagactg #### Pitpnm1_ID308_5 --> 2 - 1 Original Alignment gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttaggcCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAggtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct Alignment from CESAR gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttaggcCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAggtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct Alignment from Spaln_aa2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttagGCCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAGgtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct Alignment from Spaln_nt2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttagGCCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAGgtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct Alignment from Pairagon GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttagGCCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAGgtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct Alignment from Exonerate_protein2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttagGCCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAGgtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct Alignment from Exonerate_coding2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttagGCCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAGgtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct Alignment from GeneWise GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG cagggcagtgggggtgggaggcacagctgctttgctttgttctttcttagGCCTGCACAGAGTGATGCTCCGTGCCCATCGCCAGGCCTGGTGTTGGCAGGATGAGTGGATAGAGCTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCACAGCGTATGGCTAAGTGCAACACTGGCAGTGAAGGACCAGAGGCTGAGACCCCTGGGAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTTGATGGACCTGAGGCCCGTCCTGGCCCCGATGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCTTCTTCCCGGTCCTCCTATTCATCCCAGCATGGAGgtgagtatggggtgaacagaacagaaatggtactgacagggccccaccct #### Pitpnm1_ID310_7 --> 2 - 1 Original Alignment aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagaaGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAggtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag Alignment from CESAR aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagaaGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAggtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag Alignment from Spaln_aa2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagAAGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAGgtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag Alignment from Spaln_nt2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagAAGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAGgtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag Alignment from Pairagon AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagAAGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAGgtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag Alignment from Exonerate_protein2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagAAGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAGgtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag Alignment from Exonerate_coding2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagAAGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAGgtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag Alignment from GeneWise AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG ggcaagttactaagtcaccctacttatgctcgggtttcatctttcttcagAAGGTTTCTCGGACAGTGATGTAGTCTTCCCTAAGGAGATGACCAAGTGGAATTCCAATGATTTTATTGATACCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAGgtgattttcacgcctaatgataccagatgcaagtatgctgtgtgcaccag #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCaagtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCaagtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCAAgtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCAAgtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCAAgtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCAAgtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCAAgtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA tattgctggcaggccactgctctggcacactttaatgctgctgtttctagGGCCTAGATGGAGCAGGGGATCTAGTGGTTGAGGCATGCTCTGTACATGACCTCTTCCTCATCCTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTGAGCACCGCTTTTGAAGCTGTCACCCGAGTCCATTTCCCCAAGGCCCTAGGTCATGTAGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCGGCTGCTTATGCCCTTGTCTCCAAgtgggcgctgagggtggaagaatggagcaaacacagggccagcaataatc #### Pitpnm1_ID317_14 --> 2 - 1 Original Alignment tgGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGg ttctacagacagacagaacatcctaccctctctgcctttttgttttccagtgGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGggtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt Alignment from CESAR tgGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGg ttctacagacagacagaacatcctaccctctctgcctttttgttttccagtgGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGggtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt Alignment from Spaln_aa2Genome TGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGG ttctacagacagacagaacatcctaccctctctgcctttttgttttccagTGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGGgtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt Alignment from Spaln_nt2Genome TGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGG ttctacagacagacagaacatcctaccctctctgcctttttgttttccagTGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGGgtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt Alignment from Pairagon TGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGG ttctacagacagacagaacatcctaccctctctgcctttttgttttccagTGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGGgtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt Alignment from Exonerate_protein2genome TGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGG ttctacagacagacagaacatcctaccctctctgcctttttgttttccagTGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGGgtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt Alignment from Exonerate_coding2genome TGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGG ttctacagacagacagaacatcctaccctctctgcctttttgttttccagTGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGGgtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt Alignment from GeneWise TGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGG ttctacagacagacagaacatcctaccctctctgcctttttgttttccagTGGCTCAGCTGCGTCCAGCCTGCGAGCAGATCTACAATCTCTTCCATGCCGCTGACCCCTGTGCCTCCCGCCTGGAACCCCTGCTGGCCCCCAAGTTCCAGGCCATCGCCCCCCTGGCTGTACCTCGTTACCAGAAGTTTCCCCTAGGAGACGGCTCGTCCTTGCTGCTGGgtaccacatccccaccccaggccactaaaggaaaaggagagaataaaagt #### Pkd2l1_ID8957_11 --> 0 - 2 Original Alignment AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGga aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGgagtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt Alignment from CESAR AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGga aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGgagtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt Alignment from Spaln_aa2Genome AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGGA aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGGAgtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt Alignment from Spaln_nt2Genome AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGGA aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGGAgtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt Alignment from Pairagon AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGGA aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGGAgtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt Alignment from Exonerate_protein2genome AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGGA aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGGAgtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt Alignment from Exonerate_coding2genome AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGGA aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGGAgtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt Alignment from GeneWise AGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGGA aaggtgccaagaacactgccagtgtcaaatgggtttgtgtttcgtttcagAGCTATAACAAGACCCTACTAAGGTTGCGCCTGAGGGAGGAGCGGGTTTCTGATGTGCAGAAGGTCCTGAAGGGTGGAGAACCAGAGATCCAGTTTGAAGATTCCACCAGCACCTTGAGGGAgtgaggcaatggaaatccactcttttttgaaattggctagaagtttgtgt #### Pkd2l1_ID8965_3 --> 2 - 0 Original Alignment tgACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagtgACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata Alignment from CESAR tgACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagtgACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata Alignment from Spaln_aa2Genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagTGACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata Alignment from Spaln_nt2Genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagTGACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata Alignment from Pairagon TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagTGACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata Alignment from Exonerate_protein2genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagTGACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata Alignment from Exonerate_coding2genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagTGACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata Alignment from GeneWise TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT tcatctcgagaggtggaccttgagaacatgtcatgtgcttgttcatgcagTGACATATGGAATGACAAGTTCTAGTGCTTATTACTACACCCAAGCAATGTCTGAATTGTTCCTACATGCCCCATCCGATTCTGGAGTCTCTTTCCAAACCATCAGCAGCATGTTTGACTTCTGGGATgtgtgaatggatagcactgctttcaccccacccccaccttcatctctata #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctaggaTACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctaggaTACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from GeneWise -------------------------------------------------GGATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG AGCAGCTTGGAAGTTTCAGCAGAGATCTCATGCCTGGCTTCTGTTCCTAGGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct #### Plcb3_ID1917_14 --> 2 - 0 Original Alignment ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagggCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt Alignment from CESAR ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagggCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt Alignment from Spaln_aa2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagGGCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt Alignment from Spaln_nt2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagGGCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt Alignment from Pairagon GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagGGCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt Alignment from Exonerate_protein2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagGGCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt Alignment from Exonerate_coding2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagGGCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt Alignment from GeneWise -----CCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG catcagtaccagcatgtggttctaacactctaagctcccggctgttacagGGCTGCCAAGCTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTTAGCCGGGAACCAAATGTGCCCATGCCTGACCGTGATCGTGATGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAATGGATCCAAAAAAGCCCACCACAGACGAGgtgagtaccaatagaggggagaagagtgtctgctgtgtggtagcctctgt #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATG---GGTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCggcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCggcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTGGGTCC- aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGGCAAGTgtcctgtcctgacttctacccctgaacctaatgatatattcacc #### Plcb3_ID1920_11 --> 2 - 2 Original Alignment cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagcaGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACtcgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag Alignment from CESAR cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagcaGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACtcgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag Alignment from Spaln_aa2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagCAGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACTCgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag Alignment from Spaln_nt2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagCAGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACTCgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag Alignment from Pairagon CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagCAGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACTCgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag Alignment from Exonerate_protein2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagCAGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACTCgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag Alignment from Exonerate_coding2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagCAGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACTCgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag Alignment from GeneWise CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC gtccaggtagaacaaggtagccagtggtcacctgccttcttactcaccagCAGGCCAGCTAGCTGGGCCATCATCAGTAGAAATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTCTGGAAGGGACGGCCACCTGAGGAAGAGCCGTTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTGCTCGAGGCTATTGCCGAGGCAGCCTTCAAGACCTCACCCTACCCTGTCATCCTTTCTTTTGAGAACCATGTTGACTCgtgaggggccctgacctgcggatctctagagagacttccggtaaaggcag #### Plcb3_ID1921_10 --> 2 - 1 Original Alignment acCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTg gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagatCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTggtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc Alignment from CESAR acCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTg gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagatCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTggtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc Alignment from Spaln_aa2Genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTGgtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc Alignment from Spaln_nt2Genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTGgtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc Alignment from Pairagon ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTGgtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc Alignment from Exonerate_protein2genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTGgtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc Alignment from Exonerate_coding2genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTGgtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc Alignment from GeneWise ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG gtgggtggggcccacctagcccatctgaccttacagtagtttgtgcgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGGTGAGGAGAACGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGTATGGACATGACTCAGCCACTGAGTGCTTATTTTATCAACTCGTCACATAACACTTATCTCACTGgtactagagacagtgtggagtgtgatcatgcacatcattcctcacactgc #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAgcgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAgcgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from Exonerate_coding2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagacct #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga Alignment from Exonerate_coding2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaagatataagcctgaggacccctccccacagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagcttaagattacatactcacagggccaagattgccaaagtataaga #### Plce1_ID7607_2 --> 0 - 1 Original Alignment ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAggtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from CESAR ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAggtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Spaln_aa2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Spaln_nt2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Pairagon ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Exonerate_protein2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from Exonerate_coding2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac Alignment from GeneWise ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacacttcgttcatgaactcttgcttatagATCTACAGTGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACTGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACTGGTTCTCTTCTAGAGGCGACTACGTCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaaggtttggaatatcattttcagcttttcagatttgcctttagagaac #### Plce1_ID7617_5 --> 1 - 0 Original Alignment gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttaggTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac Alignment from CESAR gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttaggTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac Alignment from Spaln_aa2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttagGTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac Alignment from Spaln_nt2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttagGTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac Alignment from Pairagon GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttagGTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac Alignment from Exonerate_protein2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttagGTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac Alignment from Exonerate_coding2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttagGTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac Alignment from GeneWise GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gatggcatagatccttagaccttaaaaagaattgtgtgtgctgattttagGTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGAAGGATGCCATGGCCCAGCATGAGTCTTCTGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTACACATCCCTGGCTGCAAAGTGGTCCCCTTCTGCGGGGTGTTCCTAAAGGAGCTCTGTGAAGTGTTAGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAGGAGAAAGCTCTGGAGgtaagttgttcctaagcaggcagcccctgatccccaagccttctatatac #### Plce1_ID7642_24 --> 2 - 0 Original Alignment acCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagacCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta Alignment from CESAR acCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagacCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta Alignment from Spaln_aa2Genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagACCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta Alignment from Spaln_nt2Genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagACCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta Alignment from Pairagon ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagACCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta Alignment from Exonerate_protein2genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagACCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta Alignment from Exonerate_coding2genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagACCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta Alignment from GeneWise ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtctcttctccattaaataatatgtagttgttttcttaaatatgttgtagACCTTCCTTTACATCTAAATGCTGCTATGTTCGAGGCGAATGGTGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgtgcacatccatgtggtctaagcaatgcaacatctactgatttagcta #### Plekhs1_ID12099_4 --> 1 - 2 Original Alignment cAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACag catctcaggttatgatgcatatccagtttatgttactgattctattgcagcAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACaggtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta Alignment from CESAR cAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACag catctcaggttatgatgcatatccagtttatgttactgattctattgcagcAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACaggtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta Alignment from Spaln_aa2Genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG catctcaggttatgatgcatatccagtttatgttactgattctattgcagCAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta Alignment from Spaln_nt2Genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG catctcaggttatgatgcatatccagtttatgttactgattctattgcagCAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta Alignment from Pairagon CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG catctcaggttatgatgcatatccagtttatgttactgattctattgcagCAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta Alignment from Exonerate_protein2genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG catctcaggttatgatgcatatccagtttatgttactgattctattgcagCAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta Alignment from Exonerate_coding2genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG catctcaggttatgatgcatatccagtttatgttactgattctattgcagCAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta Alignment from GeneWise CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG catctcaggttatgatgcatatccagtttatgttactgattctattgcagCAGCTCCACTGTAGAAGTTGGGATAAACTGCCAGGAAAAGATGCAATCGGTCCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtgagtagcctgtgtgttgaacaaaaaccttataccatagacagactgta #### Pnlip_ID12748_7 --> 2 - 1 Original Alignment gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAggtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa Alignment from CESAR gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAggtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa Alignment from Spaln_aa2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGgtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa Alignment from Spaln_nt2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGgtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa Alignment from Pairagon GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGgtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa Alignment from Exonerate_protein2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGgtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa Alignment from Exonerate_coding2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGgtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa Alignment from GeneWise GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG ttgatagtgttggggttgcatagtaatacgtagcttcaaatcccttccagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAATGGAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGgtaagtattatgtccatgaatttctcttgattgagggtatgcactgtgaa #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagggAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagggAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcctagctacaatagcttcctgttcagatgctactttcatcccttttagGGAAAGAGGTTTGTTATCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCAATTAGGCCCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCCTGCTCTACACTAACGAGAACCCAATTGCTTTCCAGgtaagtcttcatgagccctggggacaccttgttatcttttgacctgtttt #### Pnliprp2_ID12780_3 --> 0 - 0 Original Alignment ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac Alignment from CESAR ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac Alignment from Spaln_aa2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac Alignment from Spaln_nt2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac Alignment from Pairagon ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac Alignment from Exonerate_protein2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac Alignment from Exonerate_coding2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac Alignment from GeneWise ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgcagatggcccagagcaacattcagatttgctttaatgtattatgttagATAATTTCTGCCACAGACCCAGCCACCATCAATGCTTCAAACTTTCAACTGGACCGTAAGACACGCTTCATTATCCACGGATTCATAGACAAGGGTGAAGAAGGCTGGTTGCTGGACATGTGCAAGgtaaaaatctgtaggtagctatctgtccttagcacctacatctcactcac #### Pola2_ID1328_13 --> 0 - 2 Original Alignment AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAaggtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg Alignment from CESAR AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAaggtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg Alignment from Spaln_aa2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAAGgtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg Alignment from Spaln_nt2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAAGgtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg Alignment from Pairagon AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAAGgtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg Alignment from Exonerate_protein2genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAAGgtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg Alignment from Exonerate_coding2genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAAGgtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg Alignment from GeneWise AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG agcacacactaggggtctgtcccaagtgctgacacgaaccttttctacagAACTGTAAGTTGACAAGCCCATTTGAAGATGTTCTCAAGCAATGCCTGAGAACAGTTATTGAAGGAACAAGAAGgtaggtctcccagttgctgggcagaacccaaggctccccagggtcttctg #### Pola2_ID1329_12 --> 0 - 0 Original Alignment TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct Alignment from CESAR TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct Alignment from Spaln_aa2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct Alignment from Spaln_nt2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct Alignment from Pairagon TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct Alignment from Exonerate_protein2genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct Alignment from Exonerate_coding2genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct Alignment from GeneWise TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggggaggcagcagatgggcaggaggcagagtcttttcttcccaattctagTTTGGACCGTTGCTGGATGCTAAACATGAACAGGTGGAAgtaagagcctgggggtgggcctggaagtgtatctatgactacggcagcct #### Pola2_ID1331_10 --> 0 - 1 Original Alignment GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAggtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa Alignment from CESAR GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAggtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa Alignment from Spaln_aa2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAGgtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa Alignment from Spaln_nt2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAGgtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa Alignment from Pairagon GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAGgtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa Alignment from Exonerate_protein2genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAGgtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa Alignment from Exonerate_coding2genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAGgtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa Alignment from GeneWise GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggaggcaacatgggctgtgggtgtggcattaattttctcctccttttagGGCGTACCACTTCCATTCTATCAGCCTACTGAGGAGAAAGGAGgtatccattgtttcaaaattttccttgctaacaatgggggtggtatacaa #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagggGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAggtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagggGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAggtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt #### Polr2g_ID2376_7 --> 0 - 1 Original Alignment TTTGCCATTGGCTCTCTGATGGACGACTACTTGg cttgggattggggcatgctgcctcatctctctctctatttttttaaatagTTTGCTATTGGCTCTTTGATGGACGACTATCTGggtgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt Alignment from CESAR TTTGCCATTGGCTCTCTGATGGACGACTACTTGg cttgggattggggcatgctgcctcatctctctctctatttttttaaatagTTTGCTATTGGCTCTTTGATGGACGACTATCTGggtgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt Alignment from Spaln_aa2Genome TTTGCCATTGGCTCTCTGATGGACGACTACTTGG cttgggattggggcatgctgcctcatctctctctctatttttttaaatagTTTGCTATTGGCTCTTTGATGGACGACTATCTGGgtgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt Alignment from Spaln_nt2Genome TTTGCCATTGGCTCTCTGATGGACGACTACTTGG cttgggattggggcatgctgcctcatctctctctctatttttttaaatagTTTGCTATTGGCTCTTTGATGGACGACTATCTGGgtgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt Alignment from Pairagon TTTGCCATTGGCTCTCTGATGGACGACTACTTGG cttgggattggggcatgctgcctcatctctctctctatttttttaaatagTTTGCTATTGGCTCTTTGATGGACGACTATCTGGgtgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt Alignment from Exonerate_protein2genome TTTGCCATTGGCTCTCTGATGGACGACTACTTGGGG cttgggattggggcatgctgcctcatctctctctctatttttttaaatagTTTGCTATTGGCTCTTTGATGGACGACTATCTGGGTgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt Alignment from Exonerate_coding2genome cttgggattggggcatgctgcctcatctctctctctatttttttaaatagtttgctattggctctttgatggacgactatctgggtgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt Alignment from GeneWise cttgggattggggcatgctgcctcatctctctctctatttttttaaatagtttgctattggctctttgatggacgactatctgggtgagtgcacgggttctgagatctggaacttgttccctgaggaagggtgt #### Polr2g_ID2380_3 --> 1 - 0 Original Alignment aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagaTATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg Alignment from CESAR aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagaTATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg Alignment from Spaln_aa2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg Alignment from Spaln_nt2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg Alignment from Pairagon ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg Alignment from Exonerate_protein2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg Alignment from Exonerate_coding2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg Alignment from GeneWise ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG tggcttttcaggggcacttcacatagctccccgcccttctgctcccgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCGCTCAGGTTAACAAGgtaactgtatttttcatagaaaggttatgtggtatttcctgacatgcagg #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa ctcctgtcttccatgcggctggctgggtcgccctttgtctccatccacagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGaagtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa ctcctgtcttccatgcggctggctgggtcgccctttgtctccatccacagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGaagtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcttccatgcggctggctgggtcgccctttgtctccatccacagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGAAgtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcttccatgcggctggctgggtcgccctttgtctccatccacagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGAAgtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac Alignment from Pairagon ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcttccatgcggctggctgggtcgccctttgtctccatccacagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGAAgtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac Alignment from Exonerate_protein2genome CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcttccatgcggctggctgggtcgccctttgtctccatccaCAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGAAgtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac Alignment from Exonerate_coding2genome CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcttccatgcggctggctgggtcgccctttgtctccatccaCAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGAAgtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcttccatgcggctggctgggtcgccctttgtctccatcca------CAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACCGGGAAgtacgattcttcttcacagggaggtctgttgaatgcatgcataatgacac #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaaggcGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGtgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaaggcGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGtgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from GeneWise GTGGTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGC---GACATCCATGGACAGTACTACGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt #### Ppp1r32_ID2849_2 --> 2 - 2 Original Alignment gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gccactcatcacctttttggtgggctttccttgactccctttttctttaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAgggtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc Alignment from CESAR gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gccactcatcacctttttggtgggctttccttgactccctttttctttaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAgggtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc Alignment from Spaln_aa2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcatcacctttttggtgggctttccttgactccctttttctttagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc Alignment from Spaln_nt2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcatcacctttttggtgggctttccttgactccctttttctttagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc Alignment from Pairagon GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcatcacctttttggtgggctttccttgactccctttttctttagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc Alignment from Exonerate_protein2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcatcacctttttggtgggctttccttgactccctttttctttagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc Alignment from Exonerate_coding2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcatcacctttttggtgggctttccttgactccctttttctttagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc Alignment from GeneWise GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gccactcatcacctttttggtgggctttccttgactccctttttctttagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGTACAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCTGCCATAGGgtaagattcctatactctgttggatcttaaatattaaagaatgtcatgcc #### Ppp6r3_ID79_14 --> 0 - 2 Original Alignment GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCaagtaaaaatattttaatctttccttattatgacttcctacacacgttttga Alignment from CESAR GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCaagtaaaaatattttaatctttccttattatgacttcctacacacgttttga Alignment from Spaln_aa2Genome GCCTTTTCTGATTATCAGATGCAACAAATG---ACGTCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCAAgtaaaaatattttaatctttccttattatgacttcctacacacgttttga Alignment from Spaln_nt2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTC---CAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCAAgtaaaaatattttaatctttccttattatgacttcctacacacgttttga Alignment from Pairagon GCCTTTTCTGATTATCAGATGCAACAAATGA---CGTCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCAAgtaaaaatattttaatctttccttattatgacttcctacacacgttttga Alignment from Exonerate_protein2genome GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCAAgtaaaaatattttaatctttccttattatgacttcctacacacgttttga Alignment from Exonerate_coding2genome GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCAAgtaaaaatattttaatctttccttattatgacttcctacacacgttttga Alignment from GeneWise GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA gaatgccattataatcatgatatcactgtccttaataaaactcactaaagGCATTTTCTGATTATCAGATGCAACAAATGACATCATCCAATTTTATCGACCAGTATGGCTTCAATGATGAAAAGTTTGCAGACCAAGACGACATTGGCAAgtaaaaatattttaatctttccttattatgacttcctacacacgttttga #### Ppp6r3_ID85_9 --> 0 - 0 Original Alignment GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from CESAR GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Spaln_aa2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Spaln_nt2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAG---AGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Pairagon GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAG---AGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Exonerate_protein2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from Exonerate_coding2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca Alignment from GeneWise GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT aattgcttcagcattgatctgactaaagcgcttttgataaataatcacagGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTGGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAACATgtgagagctattcccccttattgtgttctccaaatgtgcagtgaattaca #### Prdx3_ID13362_5 --> 0 - 2 Original Alignment AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCaggtaagggctgttcctagatatgggatggttttgtatattttagtgttact Alignment from CESAR AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCaggtaagggctgttcctagatatgggatggttttgtatattttagtgttact Alignment from Spaln_aa2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCAGgtaagggctgttcctagatatgggatggttttgtatattttagtgttact Alignment from Spaln_nt2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCAGgtaagggctgttcctagatatgggatggttttgtatattttagtgttact Alignment from Pairagon AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCAGgtaagggctgttcctagatatgggatggttttgtatattttagtgttact Alignment from Exonerate_protein2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCAGgtaagggctgttcctagatatgggatggttttgtatattttagtgttact Alignment from Exonerate_coding2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCAGgtaagggctgttcctagatatgggatggttttgtatattttagtgttact Alignment from GeneWise AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG accctgttggtccagccatgaaaaccaggacagactcgttcctcccacagAATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCAGATATAACTAAGCAGATATCCCGAGACTACGGTGTGCTGTTGGAAAGTGCTGGCATAGCACTCAGgtaagggctgttcctagatatgggatggttttgtatattttagtgttact #### Prkg1_ID6489_17 --> 1 - 0 Original Alignment gTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccaggTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg Alignment from CESAR gTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccaggTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg Alignment from Spaln_aa2Genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccagGTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg Alignment from Spaln_nt2Genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccagGTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg Alignment from Pairagon GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccagGTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg Alignment from Exonerate_protein2genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccagGTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg Alignment from Exonerate_coding2genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccagGTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg Alignment from GeneWise GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT cttgttttagaaatagaaactattaacatttcatctgtgcctgatcccagGTGGTTTGAGGGTTTTAATTGGGAAGGCTCAAGAAAAGGCACTTTGACACCTCCCATAATTCCAAGTgtgagtagagtttttggctgtgaaaggtgtgcccttcatggtaccttttg #### Prkg1_ID6493_13 --> 1 - 0 Original Alignment gGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttaggGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta Alignment from CESAR gGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttaggGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta Alignment from Spaln_aa2Genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta Alignment from Spaln_nt2Genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta Alignment from Pairagon GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta Alignment from Exonerate_protein2genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta Alignment from Exonerate_coding2genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta Alignment from GeneWise GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG cccattccccaggatttcacacggggctgactctgtatgttttgatttagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCCTATCTTCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCAGGGCTATGCCAAACTGgtgagagtgcttcacacacaggctatattccaaacttagtgttctgttta #### Prkg1_ID6530_4 --> 2 - 2 Original Alignment ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcagctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAaggtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat Alignment from CESAR ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcagctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAaggtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat Alignment from Spaln_aa2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat Alignment from Spaln_nt2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat Alignment from Pairagon CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat Alignment from Exonerate_protein2genome ACTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcaGCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat Alignment from Exonerate_coding2genome ACTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcaGCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat Alignment from GeneWise CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgaaatggattaatttcccccttcagaaccggaatgggaaggcagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcattttgttgtttcttttcatcttgaaggctttgttgcctctat #### Prkg1_ID6589_2 --> 1 - 1 Original Alignment gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg gagaggttccatttggtcattctaatgcgttttctcatccatttgcttaggTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTATGTCATGGAAggtgagcattaggatcctgtctatcctctagcatatactcccttccgaact Alignment from CESAR gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg gagaggttccatttggtcattctaatgcgttttctcatccatttgcttaggTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTATGTCATGGAAggtgagcattaggatcctgtctatcctctagcatatactcccttccgaact Alignment from Spaln_aa2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gagaggttccatttggtcattctaatgcgttttctcatccatttgcttagGTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTATGTCATGGAAGgtgagcattaggatcctgtctatcctctagcatatactcccttccgaact Alignment from Spaln_nt2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gagaggttccatttggtcattctaatgcgttttctcatccatttgcttagGTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTATGTCATGGAAGgtgagcattaggatcctgtctatcctctagcatatactcccttccgaact Alignment from Pairagon GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gagaggttccatttggtcattctaatgcgttttctcatccatttgcttagGTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTATGTCATGGAAGgtgagcattaggatcctgtctatcctctagcatatactcccttccgaact Alignment from Exonerate_protein2genome gagaggttccatttggtcattctaatgcgttttctcatccatttgcttaggtcgaaggatctcataaaggaggctatccttgacaatgacttcatgaagaacttggagctgtcacagatccaggagattgtggattgtatgtaccctgtggaatacggcaaggacagctgcatcatcaaggaaggcgatgtggggtcactggtgtatgtcatggaaggtgagcattaggatcctgtctatcctctagcatatactcccttccgaact Alignment from Exonerate_coding2genome gagaggttccatttggtcattctaatgcgttttctcatccatttgcttaggtcgaaggatctcataaaggaggctatccttgacaatgacttcatgaagaacttggagctgtcacagatccaggagattgtggattgtatgtaccctgtggaatacggcaaggacagctgcatcatcaaggaaggcgatgtggggtcactggtgtatgtcatggaaggtgagcattaggatcctgtctatcctctagcatatactcccttccgaact Alignment from GeneWise GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG gagaggttccatttggtcattctaatgcgttttctcatccatttgcttagGTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTATGTCATGGAAGgtgagcattaggatcctgtctatcctctagcatatactcccttccgaact #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactacagtctgtttgctttccacgatagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATTTGGGACCTAAAGgtgagtggacatataggtcccatctggggccaacaggagggactagtggg #### Psat1_ID3961_8 --> 1 - 2 Original Alignment aTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACag tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagaTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACaggtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc Alignment from CESAR aTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACag tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagaTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACaggtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc Alignment from Spaln_aa2Genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAGgtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc Alignment from Spaln_nt2Genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAGgtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc Alignment from Pairagon ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAGgtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc Alignment from Exonerate_protein2genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAGgtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc Alignment from Exonerate_coding2genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAGgtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc Alignment from GeneWise ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tgataatgtacctcttagaaactcacatggcttgtctgggttctgtgcagATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAATGCCAAAGGAGACAAAGCTTTGGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAGgtcagaaaactttgtccccaggcctgtcagaggcacagagaataacacgc #### Psat1_ID3962_7 --> 1 - 2 Original Alignment cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc Alignment from CESAR cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc Alignment from Spaln_aa2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc Alignment from Spaln_nt2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc Alignment from Pairagon CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc Alignment from Exonerate_protein2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc Alignment from Exonerate_coding2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc Alignment from GeneWise CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttggcttttgggagcagaaatgacttggcctctgtcttcttcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCTATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcattatagatactatgaactagagactctttcgtgaagc #### Psat1_ID3966_3 --> 2 - 2 Original Alignment aaATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGct agtatttttgaacttttattttttcctcttgacctgaatgtgacctgcagaaATGAGTCACCGGGCATCAGATTTTGCCAAAATTATCGGCAATACAGAGAATCTTGTAAGGGAATTGctgtaggattttacatgtatattccaaagttttacctcatgctgtgtgtctg Alignment from CESAR tgtatttttgaacttttatttttttctctgtgattccttggcttccacagaaatgagtcaccgggcatcagattttgccaaaattatcggcaatacagagaatcttgtaagggaattgctgtaagtttttacatgtatattcaaaagttttaccccatgttgtgtgtctg Alignment from Spaln_aa2Genome tgtatttttgaacttttatttttttctctgtgattccttggcttccacagaaatgagtcaccgggcatcagattttgccaaaattatcggcaatacagagaatcttgtaagggaattgctgtaagtttttacatgtatattcaaaagttttaccccatgttgtgtgtctg Alignment from Spaln_nt2Genome tgtatttttgaacttttatttttttctctgtgattccttggcttccacagaaatgagtcaccgggcatcagattttgccaaaattatcggcaatacagagaatcttgtaagggaattgctgtaagtttttacatgtatattcaaaagttttaccccatgttgtgtgtctg Alignment from Pairagon AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT tgtatttttgaacttttatttttttctctgtgattccttggcttccacagAAATGAGTCACCGGGCATCAGATTTTGCCAAAATTATCGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacatgtatattcaaaagttttaccccatgttgtgtgtctg Alignment from Exonerate_protein2genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT tgtatttttgaacttttatttttttctctgtgattccttggcttccacagAAATGAGTCACCGGGCATCAGATTTTGCCAAAATTATCGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacatgtatattcaaaagttttaccccatgttgtgtgtctg Alignment from Exonerate_coding2genome AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTGGCAATACAGAGAATCTTGTGAGGGAATTGCT tgtatttttgaacttttatttttttctctgtgattccttggcttccacagAAATGAGTCACCGGGCATCAGATTTTGCCAAAATTATCGGCAATACAGAGAATCTTGTAAGGGAATTGCTgtaagtttttacatgtatattcaaaagttttaccccatgttgtgtgtctg Alignment from GeneWise tgtatttttgaacttttatttttttctctgtgattccttggcttccacagaaatgagtcaccgggcatcagattttgccaaaattatcggcaatacagagaatcttgtaagggaattgctgtaagtttttacatgtatattcaaaagttttaccccatgttgtgtgtctg #### Ptar1_ID5192_2 --> 1 - 1 Original Alignment aGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATg tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagaGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATggtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca Alignment from CESAR aGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATg tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagaGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATggtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca Alignment from Spaln_aa2Genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATGgtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca Alignment from Spaln_nt2Genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATGgtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca Alignment from Pairagon AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATGgtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca Alignment from Exonerate_protein2genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATGgtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca Alignment from Exonerate_coding2genome AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATGgtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca Alignment from GeneWise AGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCATTGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATG tcaaagggcagtaatctcctaaatgcctagtcttctggcttcatccccagAGATGAAATTGGCCTGATCCCATGCCCTGAAGCACGATATAACCGAAGCCCCATTGTCCTGGTTGAAAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTAAACAAAGATGgtaataatgtgcagccaagcctgggaggagatctggcttggggatgaaca #### Ptar1_ID5193_3 --> 2 - 2 Original Alignment aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagaaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCaggtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg Alignment from CESAR aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagaaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCaggtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg Alignment from Spaln_aa2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg Alignment from Spaln_nt2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg Alignment from Pairagon AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg Alignment from Exonerate_protein2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg Alignment from Exonerate_coding2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg Alignment from GeneWise AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG cagactctgcggggcagggccgtgtgccgctgacgcgtcccttcctgcagAACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGgtgagttgattccttcaggggtaaaaggtcatttttccacatcgcagggg #### Ptar1_ID5196_6 --> 0 - 2 Original Alignment ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACag ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTaggtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg Alignment from CESAR ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACag ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTaggtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg Alignment from Spaln_aa2Genome ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACAG ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTAGgtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg Alignment from Spaln_nt2Genome ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACAG ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTAGgtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg Alignment from Pairagon ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACAG ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTAGgtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg Alignment from Exonerate_protein2genome ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACAG ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTAGgtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg Alignment from Exonerate_coding2genome ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACAG ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTAGgtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg Alignment from GeneWise ATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCACAG ggaagaacccttgtgagtctccttctcacatcagcttgtcttatctttagATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCACCTATGCATGTCTCAGACCACAGTGGATTTCACTATCGCCAATTCTTGTTAAAGTCATTGATTAGCCAAACTACAATAGACAGTGCTGTACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGTAGCAGCCTCAACAGAGGAGCCAAGTGTGAATCTTCCCCTCCTCCTAGAAGAGGAGGTGGGATTCTGCACAGATCTTATTGATTCCTATCCAGGACATGAAACCCTTTGGTGTCGTAGgtaatggagaggaaacctgtttcttgttactaaccaggtgtgactgtatg #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg Alignment from Exonerate_coding2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggcagtggggcggccctgaccccttttcaccaagtgatctaattatgtagAGGATCTATTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAGAACACCATGGTGAACCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtgagtgaagcacataaggctgtgtggggggtgtcttatgttggtacttg #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagctTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagctTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt Alignment from GeneWise CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG atgggagttactcacattgggtccatgaaccacattttattctcctgcagCTTGCTTTCTGGACTCCATGGCCACCCTAGGGCTTGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtatggcacccagaccccaaccttgtggtgcttagtcacaataacaaggt #### Pygm_ID1692_16 --> 0 - 1 Original Alignment GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGggtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac Alignment from CESAR GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAg tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGggtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac Alignment from Spaln_aa2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGGgtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac Alignment from Spaln_nt2Genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGGgtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac Alignment from Pairagon GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGGgtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac Alignment from Exonerate_protein2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGGgtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac Alignment from Exonerate_coding2genome GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGGgtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac Alignment from GeneWise GCTGCACCCGGGTACCACATGGCTAAGATGATCATCAAGCTTATCACTGCCATTGGGGATGTGGTCAACCACGACCCTGCGGTAGGAGACCGCCTCCGAGTGATCTTCCTGGAGAACTACCGAGTCTCCCTTGCTGAGAAAG tcaagatgtgcaaaggagggggacacacctggctttaccaagaacctcagGCAGCACCTGGGTACCACATGGCTGAGATGATCATCAAGCTTATCACTGCTATTGGAGATGTGGTCAACCATGACCCCACGGTAGGAGACCGTCTCCGAGTGATCTTCCTGGAGAATTACCGAGTCTCCCTTGCTGAGAAGGgtaagagtggcagtcgctgtgggggagctatggcaggctgagaaggaaac #### Pygm_ID1693_17 --> 2 - 2 Original Alignment ttATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAACTTC---------------TTCATCTTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAgg ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagttATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAgggtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc Alignment from CESAR ttATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAG---------GAG---AACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAgg ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagttATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAgggtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc Alignment from Spaln_aa2Genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagTTATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAGGgtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc Alignment from Spaln_nt2Genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAACTT------------CTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagTTATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAGGgtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc Alignment from Pairagon TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAA---------------CTTCTTCATCTTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagTTATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAGGgtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc Alignment from Exonerate_protein2genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagTTATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAGGgtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc Alignment from Exonerate_coding2genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagTTATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAGGgtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc Alignment from GeneWise TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAAC------------TTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG ggtacagaattatgtaatgtttacttggtaacctttctggcttctattagTTATTCCTGCGGCAGACCTATCAGAGCAGATCTCCACTGCTGGCACTGAGGCCTCAGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGTGCCAATGTGGAAATGGCTGAGGAGGCAGGAGAGAAGAACTTAGAGAAGAACTTCTTCATCACCTTTGGAATGCGAGTGGAGGATGTGGAAAGGCTGGACCAGAGAGGgtgagtgggtaggaatgccagactgactggcttacagtgaagaggcatgc #### Pygm_ID1694_18 --> 1 - 2 Original Alignment gTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACcg gtagttggggagccctctgtggagaactcagccttcgcctgtatctacaggTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACcggtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag Alignment from CESAR gTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACcg gtagttggggagccctctgtggagaactcagccttcgcctgtatctacaggTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACcggtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag Alignment from Spaln_aa2Genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG gtagttggggagccctctgtggagaactcagccttcgcctgtatctacagGTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACCGgtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag Alignment from Spaln_nt2Genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG gtagttggggagccctctgtggagaactcagccttcgcctgtatctacagGTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACCGgtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag Alignment from Pairagon GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG gtagttggggagccctctgtggagaactcagccttcgcctgtatctacagGTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACCGgtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag Alignment from Exonerate_protein2genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG gtagttggggagccctctgtggagaactcagccttcgcctgtatctacagGTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACCGgtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag Alignment from Exonerate_coding2genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG gtagttggggagccctctgtggagaactcagccttcgcctgtatctacagGTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACCGgtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag Alignment from GeneWise GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG gtagttggggagccctctgtggagaactcagccttcgcctgtatctacagGTACAATGCCAAGGAGTACTACGACCGAATACCTGAGCTTCGGCAGATCATCAAACATTTAAGCAGCAGCTTCTTCTCCCCCAAGCAGCCCGATTTGTTCAAGGACATCGTCAATATGCTTATGCGCCATGACCGgtaagctgcgtggcaaggctgagtcgggtgcaggcatggggctcatggag #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga #### Pyroxd2_ID8604_4 --> 2 - 0 Original Alignment ggTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagggTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc Alignment from CESAR ggTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagggTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc Alignment from Spaln_aa2Genome GGTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagGGTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc Alignment from Spaln_nt2Genome GGTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagGGTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc Alignment from Pairagon GGTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagGGTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc Alignment from Exonerate_protein2genome GGTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagGGTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc Alignment from Exonerate_coding2genome GGTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagGGTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc Alignment from GeneWise GGTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG tagtggtgtttggcgtgactgattggttgtgtctcctctttgtttcgcagGGTTCAAGTTCTCCCGCGCATCCTATCTCCTAAGCTTACCCAGGTCACAGATTTGCACAGATCTCGACCTGAAGgtacgtcagcttgcctggtctggtgatttgtagaggacaggtgtgatccc #### Pyroxd2_ID8606_2 --> 2 - 0 Original Alignment gaCACAATGGGCTGGTGGCT aaagggactaatcacttaaagactatgtttccaacctgtttccatctcaggaCACAATGGGCTGGTGGCTgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc Alignment from CESAR gaCACAATGGGCTGGTGGCT aaagggactaatcacttaaagactatgtttccaacctgtttccatctcaggaCACAATGGGCTGGTGGCTgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc Alignment from Spaln_aa2Genome GACACAATGGGCTGGTGGCT aaagggactaatcacttaaagactatgtttccaacctgtttccatctcagGACACAATGGGCTGGTGGCTgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc Alignment from Spaln_nt2Genome GACACAATGGGCTGGTGGCT aaagggactaatcacttaaagactatgtttccaacctgtttccatctcagGACACAATGGGCTGGTGGCTgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc Alignment from Pairagon GACACAATGGGCTGGTGGCT aaagggactaatcacttaaagactatgtttccaacctgtttccatctcagGACACAATGGGCTGGTGGCTgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc Alignment from Exonerate_protein2genome GACACAATGGGCTGGTGGCT aaagggactaatcacttaaagactatgtttccaacctgtttccatctcagGACACAATGGGCTGGTGGCTgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc Alignment from Exonerate_coding2genome GACACAATGGGCTGGTGGCT aaagggactaatcacttaaagactatgtttccaacctgtttccatctcagGACACAATGGGCTGGTGGCTgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc Alignment from GeneWise aaagggactaatcacttaaagactatgtttccaacctgtttccatctcaggacacaatgggctggtggctgcaagtacctctttggcctcacttcagtgtccccaacagcaaaggggtcc #### Rab1b_ID844_4 --> 0 - 0 Original Alignment TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct Alignment from CESAR TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct Alignment from Spaln_aa2Genome TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct Alignment from Spaln_nt2Genome TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct Alignment from Pairagon TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct Alignment from Exonerate_protein2genome TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct Alignment from Exonerate_coding2genome TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct Alignment from GeneWise TGGGACACAGCTGGTCAGGAGCGGTTCAGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAG ggctagaagttctcctatggctgacttacccacctggtttcctcttgcagTGGGACACAGCTGGCCAGGAGCGGTTCAGGACTATCACTTCAAGCTACTATCGTGGGGCTCATGGGATCGTTGTGGTGTATGATGTCACTGACCAGgtgagtattgcagtcttgcctccttgccttgagttttgattcttgccgct #### Rab1b_ID846_2 --> 1 - 0 Original Alignment tGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT aaggggaagagttcctgcttgacttccagctctctccctccttacaaaagtGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt Alignment from CESAR tGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT aaggggaagagttcctgcttgacttccagctctctccctccttacaaaagtGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt Alignment from Spaln_aa2Genome TGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT aaggggaagagttcctgcttgacttccagctctctccctccttacaaaagTGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt Alignment from Spaln_nt2Genome TGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT aaggggaagagttcctgcttgacttccagctctctccctccttacaaaagTGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt Alignment from Pairagon TGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT aaggggaagagttcctgcttgacttccagctctctccctccttacaaaagTGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt Alignment from Exonerate_protein2genome GACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT aaggggaagagttcctgcttgacttccagctctctccctccttacaaaagtGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt Alignment from Exonerate_coding2genome GACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT aaggggaagagttcctgcttgacttccagctctctccctccttacaaaagtGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt Alignment from GeneWise AACCCCGAATAT------GACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCCTGCTCCTGCGGTTTGCT gggaagagttcctgcttgacttccagctctctc---CCTCCTTACAAAAGTGACTACCTGTTCAAGCTGCTCTTGATTGGTGACTCCGGTGTGGGCAAGTCATGCCTGCTCCTGCGGTATGCTgtaagtaatctggtcctggactttttttaattggtcagctattaattatt #### Rab3il1_ID2651_6 --> 0 - 0 Original Alignment GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatgaa Alignment from CESAR GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatatg Alignment from Spaln_aa2Genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatgaa Alignment from Spaln_nt2Genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatgaa Alignment from Pairagon GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatgaa Alignment from Exonerate_protein2genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatgaa Alignment from Exonerate_coding2genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatgaa Alignment from GeneWise GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tctagcatctcactcccatccctgattatgtttttttcttttaaatgtagGTGGATACAACACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGATGTGGGCCCTTGCCTAGACTTCACAGTACAGGAGgtatgtgctggggatccaatctagtagtgttctgtcaccatctcaatgaa #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctagtagtgttctgtcaccatctcaatatgtgtatttgttaccttccagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCTGCTGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtgagtttaacttgctgggtcccttcctacccacatggtaaagtccggct #### Rab3il1_ID2653_8 --> 1 - 0 Original Alignment cACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagcACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa Alignment from CESAR cACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagcACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa Alignment from Spaln_aa2Genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa Alignment from Spaln_nt2Genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa Alignment from Pairagon CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa Alignment from Exonerate_protein2genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa Alignment from Exonerate_coding2genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa Alignment from GeneWise CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG agcatctgtgacccacattcagcgccttcgctcttgttcttgctctgcagCACATGTGCCCTTAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtatgtcagctatcctttgcccttgtagtgggcaacatggtgcagtggaa #### Rbm20_ID11377_4 --> 1 - 1 Original Alignment tGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGg gaattccttgaagacactaagcccctcctggttccttttctatttttcagtGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGggtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta Alignment from CESAR tGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGg gaattccttgaagacactaagcccctcctggttccttttctatttttcagtGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGggtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta Alignment from Spaln_aa2Genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG gaattccttgaagacactaagcccctcctggttccttttctatttttcagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta Alignment from Spaln_nt2Genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG gaattccttgaagacactaagcccctcctggttccttttctatttttcagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta Alignment from Pairagon TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG gaattccttgaagacactaagcccctcctggttccttttctatttttcagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta Alignment from Exonerate_protein2genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG gaattccttgaagacactaagcccctcctggttccttttctatttttcagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta Alignment from Exonerate_coding2genome TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG gaattccttgaagacactaagcccctcctggttccttttctatttttcagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta Alignment from GeneWise TGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAGCACAGCTGTTTATAACCCCACTGGAAACGAGG gaattccttgaagacactaagcccctcctggttccttttctatttttcagTGCTGGCCTCCAGAGTATACGTGCATCAGGAGAGGGGACTCTGTCTGCCTCTGCTAATAGTACAGCTGTTTATAACCCAACTGGAAATGAGGgtaggtagggtgagtggaaggggccctcagagtgacaactgtgaacagta #### Rbm20_ID11380_7 --> 0 - 0 Original Alignment GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca Alignment from CESAR GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca Alignment from Spaln_aa2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca Alignment from Spaln_nt2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca Alignment from Pairagon GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca Alignment from Exonerate_protein2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca Alignment from Exonerate_coding2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca Alignment from GeneWise GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtggaccttctggacactgatctcacaacagtgcccaatctctccgcagGCTTTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCTATGGTCCAATACTACCAAGAAAAGCCTGCAATTATCAATGGTGAGAAGTTACTCATTCGAATGTCCACCAGGTACAAGGAATTGCAGCTGAAGgtaagtcatcctttcagtcatccattcaagaacccctcttctgtcagtca #### Rce1_ID576_6 --> 2 - 1 Original Alignment TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtagaactcaccttgtaaggccgtctttatttcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAggtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from CESAR TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtgcctctcaccttgtaaggccgtctttatttcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAggtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Spaln_aa2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtagaactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Spaln_nt2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtagaactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Pairagon TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtagaactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Exonerate_protein2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtagaactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Exonerate_coding2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtagaactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from GeneWise TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtagaactcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacaggGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacaggGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat #### Rcl1_ID6215_5 --> 0 - 2 Original Alignment ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGgcgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac Alignment from CESAR ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGgcgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac Alignment from Spaln_aa2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac Alignment from Spaln_nt2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac Alignment from Pairagon ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac Alignment from Exonerate_protein2genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac Alignment from Exonerate_coding2genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac Alignment from GeneWise ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctgctttctccaatgtttcctactccaaactgtctcttttggcatccaagATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGTGAAGTACTTTTCTCCTGTCCTGTGAGGAAGGTCTTGAAGCCTGTCCAGCTCACAGACCCAGGTAAAATCAAGCGGATCAGAGGAATGGCgtaacctttgcatcaaagtcctactttttctctttttgtcttatgaagac #### Rcl1_ID6218_7 --> 1 - 0 Original Alignment gTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtaggTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga Alignment from CESAR gTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtaggTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga Alignment from Spaln_aa2Genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtagGTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga Alignment from Spaln_nt2Genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtagGTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga Alignment from Pairagon GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtagGTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga Alignment from Exonerate_protein2genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtagGTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga Alignment from Exonerate_coding2genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtagGTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga Alignment from GeneWise GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG cacatctgtcttcatcatgtgctccatgtttcttcttgtctcttatgtagGTCTCCTGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGGATCTTCCTGAGTGCAGAACTGGCATCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGGgtaagacccttggctctgctggtgcagagaaagggacaatcaggaacaga #### Rcl1_ID6219_8 --> 0 - 2 Original Alignment GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACac accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACacgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt Alignment from CESAR GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACac accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACacgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt Alignment from Spaln_aa2Genome GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACACgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt Alignment from Spaln_nt2Genome GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACACgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt Alignment from Pairagon GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACACgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt Alignment from Exonerate_protein2genome GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACACgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt Alignment from Exonerate_coding2genome GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACACgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt Alignment from GeneWise GGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC accctctctggttgaaccatcattgatccctggcctgtcttctcttgcagGGTGGATGCATAGACTCAACTAACCAAAGCCTAGTTCAGCTGCTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTGGGGCCACTTTCTCCCTACACgtgagttgtccctttaggctgtccctttggccttgcccatatgtccggtt #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagttGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagttGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagtGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagtGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAggttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAggttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Exonerate_coding2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag #### Rela_ID1125_2 --> 2 - 1 Original Alignment atCTGTTTCCCCTCATCTTTCCCTCAg acgttgggcattggagtcagttaacaattgagagctgtgtctgtttgcagatTTCTTTCCTCTCATCTTTCCCTCAggtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg Alignment from CESAR atCTGTTTCCCCTCATCTTTCCCTCAg acgttgggcattggagtcagttaacaattgagagctgtgtctgtttgcagatTTCTTTCCTCTCATCTTTCCCTCAggtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg Alignment from Spaln_aa2Genome ATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaacaattgagagctgtgtctgtttgcagATTTCTTTCCTCTCATCTTTCCCTCAGgtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg Alignment from Spaln_nt2Genome ATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaacaattgagagctgtgtctgtttgcagATTTCTTTCCTCTCATCTTTCCCTCAGgtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg Alignment from Pairagon GACGATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaacaattgagagctgtgtctgtttGCAGATTTCTTTCCTCTCATCTTTCCCTCAGgtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg Alignment from Exonerate_protein2genome GATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaacaattgagagctgtgtctgtttgcaGATTTCTTTCCTCTCATCTTTCCCTCAGgtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg Alignment from Exonerate_coding2genome acgttgggcattggagtcagttaacaattgagagctgtgtctgtttgcagatttctttcctctcatctttccctcaggtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg Alignment from GeneWise acgttgggcattggagtcagttaacaattgagagctgtgtctgtttgcagatttctttcctctcatctttccctcaggtgagtcaaccatcagtcctcagttggcaggggctaggctggattggggg #### Rela_ID1132_9 --> 2 - 1 Original Alignment atGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATg gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagatGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATggtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc Alignment from CESAR atGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATg gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagatGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATggtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc Alignment from Spaln_aa2Genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagATGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc Alignment from Spaln_nt2Genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagATGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc Alignment from Pairagon ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagATGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc Alignment from Exonerate_protein2genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagATGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc Alignment from Exonerate_coding2genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagATGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc Alignment from GeneWise ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG gtgcagcccagataagcagagtaaaccaccctttgttcttgtgtttgcagATGATCGCCACAGGATTGACGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggttgaggcaagcctgagagagaggggtggacaggacaatgaagtcc #### Rfk_ID4224_2 --> 2 - 0 Original Alignment ccAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagccAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta Alignment from CESAR ccAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagccAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta Alignment from Spaln_aa2Genome CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagCCAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta Alignment from Spaln_nt2Genome CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagCCAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta Alignment from Pairagon CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagCCAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta Alignment from Exonerate_protein2genome CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagCCAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta Alignment from Exonerate_coding2genome CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagCCAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta Alignment from GeneWise CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG ttgggctatagggatcactcagggcaacccccccacctctgtctccatagCCAATTTTCCTGAACAAGTGGTAGACAATCTTCCAGCTGATGTATCTACTGGCATTTATTATGGTTGGGCCAGCATTGGGAGTGGTGATGTCCATAAAATGGTGGTGAGTATTGGATGGAACCCATACTATAAGAATGTGAAGAAGTCCATGgtaagcgccagatcttgctcttttaaatccaaacaaaacttgtcaactta #### Rfk_ID4225_3 --> 0 - 1 Original Alignment GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAggtgagaagtttatattaatctttggtattattacacctgcttctgcaaag Alignment from CESAR GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAggtgagaagtttatattaatctttggtattattacacctgcttctgcaaag Alignment from Spaln_aa2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAGgtgagaagtttatattaatctttggtattattacacctgcttctgcaaag Alignment from Spaln_nt2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAGgtgagaagtttatattaatctttggtattattacacctgcttctgcaaag Alignment from Pairagon GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAGgtgagaagtttatattaatctttggtattattacacctgcttctgcaaag Alignment from Exonerate_protein2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAGgtgagaagtttatattaatctttggtattattacacctgcttctgcaaag Alignment from Exonerate_coding2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAGgtgagaagtttatattaatctttggtattattacacctgcttctgcaaag Alignment from GeneWise GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG attaatcccaccccggctatttgaatctttacctctctgtcacccggcagGAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCTATTGTTGGCTATCTAAGACCTGAAAAGAACTTTGATTCTTTAGgtgagaagtttatattaatctttggtattattacacctgcttctgcaaag #### Rfx3_ID5875_15 --> 0 - 1 Original Alignment TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAggtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg Alignment from CESAR TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAggtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg Alignment from Spaln_aa2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAGgtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg Alignment from Spaln_nt2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAGgtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg Alignment from Pairagon TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAGgtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg Alignment from Exonerate_protein2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAGgtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg Alignment from Exonerate_coding2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAGgtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg Alignment from GeneWise TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatttttctaggagtaactactacaggaagttgctttgttttgcagTTTGGCGATTTAAATGCTGTATCTCCCGGGATTCTAGATAAAGgtgaggactgaaaattctgaagatctttttgactgagcatctgtgagagg #### Rfx3_ID5881_13 --> 0 - 2 Original Alignment GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACag ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACaggtagcagaaatttatagaaatgaatattttttctatttccacaagttatc Alignment from CESAR GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACag ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACaggtagcagaaatttatagaaatgaatattttttctatttccacaagttatc Alignment from Spaln_aa2Genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtagcagaaatttatagaaatgaatattttttctatttccacaagttatc Alignment from Spaln_nt2Genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtagcagaaatttatagaaatgaatattttttctatttccacaagttatc Alignment from Pairagon GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtagcagaaatttatagaaatgaatattttttctatttccacaagttatc Alignment from Exonerate_protein2genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtagcagaaatttatagaaatgaatattttttctatttccacaagttatc Alignment from Exonerate_coding2genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtagcagaaatttatagaaatgaatattttttctatttccacaagttatc Alignment from GeneWise GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG ataggaagctgctgagttgatctatgcttgtgtcttgctctgtcttgtagGAGCAGGCTTCCTGGGTGTGCCAGTGTGACGACAACATGGTTCAGAGACTAGAAACGGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtagcagaaatttatagaaatgaatattttttctatttccacaagttatc #### Rfx3_ID5891_8 --> 2 - 0 Original Alignment atGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagatGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata Alignment from CESAR atGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagatGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata Alignment from Spaln_aa2Genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagATGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata Alignment from Spaln_nt2Genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagATGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata Alignment from Pairagon ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagATGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata Alignment from Exonerate_protein2genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagATGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata Alignment from Exonerate_coding2genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagATGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata Alignment from GeneWise ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG ttgttaccatccacaataacttttcttctgtgaccccctcctctcggcagATGCATCTCGTGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTGCAGAGCCTTTATCGAGAGCACTGTGAGgtaggacgtttttaattgtagtttaagcacatgctaaattttgccatata #### Rfx3_ID5892_7 --> 1 - 1 Original Alignment gTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAg taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttaggTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAggtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta Alignment from CESAR gTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAg taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttaggTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAggtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta Alignment from Spaln_aa2Genome GTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAG taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttagGTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAGgtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta Alignment from Spaln_nt2Genome GTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAG taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttagGTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAGgtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta Alignment from Pairagon GTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAG taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttagGTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAGgtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta Alignment from Exonerate_protein2genome GTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAG taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttagGTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAGgtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta Alignment from Exonerate_coding2genome GTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAG taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttagGTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAGgtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta Alignment from GeneWise GTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAG taaattggttttcttgtttgtttgtgttaacccacggtccatcttgttagGTACAAGCCTATGCAGAAAGTGGATGGGGTTGCAGATGGTTTCACAGGAAGTGGCCAACAGACAGGCACATCTGTTGAGCAAACTGTAATTGCCCAAAGTCAACATCATCAACAGTTTTTAGgtgagctaaggtctaatgcatattagttgctagtagactttcatgttcta #### Rhod_ID529_2 --> 0 - 1 Original Alignment AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCg ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTggtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg Alignment from CESAR AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCg ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTggtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg Alignment from Spaln_aa2Genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTGgtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg Alignment from Spaln_nt2Genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTGgtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg Alignment from Pairagon AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTGgtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg Alignment from Exonerate_protein2genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTGgtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg Alignment from Exonerate_coding2genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTGgtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg Alignment from GeneWise AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG ggggtctggcttacttcagaacctttaatttttttttcatctttccccagAGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAAGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCTGgtaggggggggcttgtggggagatgtaaaggagaaggggagccctagtgg #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg tccttgctcatccttagggaagctcttcagacacatgtttctattcctagaGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg tccttgctcatccttagggaagctcttcagacacatgtttctattcctagaGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Pairagon AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from GeneWise AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt #### Rorb_ID4530_9 --> 2 - 0 Original Alignment acCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagacCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa Alignment from CESAR acCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagacCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa Alignment from Spaln_aa2Genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagACCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa Alignment from Spaln_nt2Genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagACCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa Alignment from Pairagon ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagACCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa Alignment from Exonerate_protein2genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagACCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa Alignment from Exonerate_coding2genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagACCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa Alignment from GeneWise ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG ggcaaagttcctgtcccctctcattattcattttgttcttataactatagACCGAGCCTGGCTGATTGAACCAAGAAAAGTTCAGAAGCTTCAGGAAAAGATTTATTTTGCGTTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTAGCAAAGgttaaacttaaaatcacagacttattcaccccaagcaaagcctgaatgaa #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG ctcctttggaactctgaattctttaatttgagctgtgtcatctcacacagCAATCTGAGGAGGATGTGAGCCAATTTGATGCACGATTCACACGGCAAACACCAGTGGATAGCCCAGATGACACAGCCCTAACTGAGAGTGCCAACCAAGCCTTCCTGgtgtgtgcctggggttatggggaaaaggattgcccctagggattggagat #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccactcttattctttcaaacccatttctgtcctgctgcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTCTGGGAGATGCTGCTGATGTCCAGgtatgaatggatatgtgataatgtacttaagctggaggaggacatggata #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcaggGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcaggGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gagtaccacagagggcctgcacttacccattccttaaccttctgttgcagGGCACCAGAGATTCTATTGCGCACTGGTCACAATCGGGCAGTGGACTGGTGGAGCCTGGGGGCCCTAATGTATGACATGCTCACTGAATCAgtaagccaacttcactggtgggtgttaaggagatgttgcggggagctctt #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt #### Rps6kb2_ID376_6 --> 2 - 2 Original Alignment gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccaggtGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCtggtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa Alignment from CESAR gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccaggtGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCtggtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa Alignment from Spaln_aa2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccagGTGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCTGgtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa Alignment from Spaln_nt2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccagGTGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCTGgtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa Alignment from Pairagon GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccagGTGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCTGgtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa Alignment from Exonerate_protein2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccagGTGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCTGgtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa Alignment from Exonerate_coding2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccagGTGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCTGgtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa Alignment from GeneWise GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagaaaccaaaactacagtagcaagtcatacctcattctcccttctccagGTGGTGAGCTTTTCACACATCTTGAGCGAGAAGGCATATTCCTGGAAGACACAGCCTGgtaagagtctgggggtactctgggggtactgggccttgcctacaccccaa #### Rps6kb2_ID378_4 --> 0 - 0 Original Alignment GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc Alignment from CESAR GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc Alignment from Spaln_aa2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc Alignment from Spaln_nt2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc Alignment from Pairagon GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc Alignment from Exonerate_protein2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc Alignment from Exonerate_coding2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc Alignment from GeneWise GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggtggtgggatgaggtaaaagaagttaactgtcttctccttactccccagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtacagcatttgcttagccaacagaagacagagtaaccattgaccccatc #### Rrp12_ID8292_31 --> 0 - 1 Original Alignment AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAg tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAggtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga Alignment from CESAR AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAg tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAggtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga Alignment from Spaln_aa2Genome AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAGgtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga Alignment from Spaln_nt2Genome AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAGgtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga Alignment from Pairagon AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAGgtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga Alignment from Exonerate_protein2genome AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAGgtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga Alignment from Exonerate_coding2genome AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAGgtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga Alignment from GeneWise AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG tatttattacagtctctcaataaacaatttactgactcgattgtttccagAAGAAGAAGCTTAAGCGGCAGAGGGAGGATGAAGAGGATGAGCTGGAGATCCCAACTCGGTACCAAGgtaccatatcctttccttggacatgagtcggcttctgcatcaggctggga #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagaTTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagaTTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggacagctttgtccctctcactccttccacccctagATTGTCTGTCCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAGCTGCCAGCAGTAAGTTATACTCTACCATCTGGCCCTACCTCGAGgtaagttatccttgtctccattcatgatatgcccagatttcaccctggtt #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCaggtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCaggtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Pairagon TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagagGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAGACAGCC---CCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagagGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGA---GACAGCCCCTCGCCGTGCTGTGCTGGAAA---TCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGA---GACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAGACAGCC---CCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt #### Rrp12_ID8308_15 --> 1 - 1 Original Alignment gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg ggacctctggtctggttcaattacctctgctccaccccgcccgccagcaggGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAggtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat Alignment from CESAR gGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAg ggacctctggtctggttcaattacctctgctccaccccgcccgccagcaggGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAggtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat Alignment from Spaln_aa2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ggacctctggtctggttcaattacctctgctccaccccgcccgccagcagGGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAGgtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat Alignment from Spaln_nt2Genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ggacctctggtctggttcaattacctctgctccaccccgcccgccagcagGGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAGgtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat Alignment from Pairagon GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ggacctctggtctggttcaattacctctgctccaccccgcccgccagcagGGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAGgtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat Alignment from Exonerate_protein2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ggacctctggtctggttcaattacctctgctccaccccgcccgccagcagGGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAGgtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat Alignment from Exonerate_coding2genome GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ggacctctggtctggttcaattacctctgctccaccccgcccgccagcagGGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAGgtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat Alignment from GeneWise GGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAG ggacctctggtctggttcaattacctctgctccaccccgcccgccagcagGGAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATTATGTCCGGGAAACCAGGCTTGGTTTCTTCACCACTTACTTCCTGCCCCTGGCCACAACTCTTAAGAGAAAAGgtgagtagcccctagttgtgtacagtctgaaatcaggctcctccctggat #### Rrp12_ID8309_14 --> 0 - 2 Original Alignment TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTga attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTgagtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa Alignment from CESAR TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTga attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTgagtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa Alignment from Spaln_aa2Genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTGAgtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa Alignment from Spaln_nt2Genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTGAgtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa Alignment from Pairagon TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTGAgtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa Alignment from Exonerate_protein2genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTGAgtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa Alignment from Exonerate_coding2genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTGAgtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa Alignment from GeneWise TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA attaaaccctgactccaccatcatgtctcatagcacactgccctcttcagTGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCATACAGCAGCCCTGGACCAGGCTGTGGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCTGTGCCCTTGGAAATCGATGGCTCTGAgtgagtgtgaacctgcttggctctgtatacaacttgcttggctcccagaa #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccggctgccaggccttttttgctgcctaggtgatgtcatcatcttacagGCATTCCGGCAGCTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaagtcttgggagggaggtggcagctctgcatttttatgaaatgtaata #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg #### Scd1_ID9002_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGg tgtggattcaagagctgtctatccagactaacccaaccctctcctcctaggTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGggtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGg tgtggattcaagagctgtctatccagactaacccaaccctctcctcctaggTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGggtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tgtggattcaagagctgtctatccagactaacccaaccctctcctcctagGTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGGgtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tgtggattcaagagctgtctatccagactaacccaaccctctcctcctagGTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGGgtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tgtggattcaagagctgtctatccagactaacccaaccctctcctcctagGTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGGgtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tgtggattcaagagctgtctatccagactaacccaaccctctcctcctagGTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGGgtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tgtggattcaagagctgtctatccagactaacccaaccctctcctcctagGTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGGgtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tgtggattcaagagctgtctatccagactaacccaaccctctcctcctagGTACTACAGGCCCAGCCTCCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAGACCTTTGTAAACAGCCTGTTTGTTAGCACCTTCTTGCGATACACTTTGGTGCTTAATGCGACCTGGCTGGTGAACAGTGCTGCACATCTCTACGGATATCGCCCTTACGTCAAGAACATTCAATCTCGGGAGAATATCCTGGTTTCCCTAGGTGCCGTGGgtgagtcgctagtaccaactaggaccatatccaggagtcttccagctgtg #### Scd1_ID9005_2 --> 0 - 1 Original Alignment ATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg caaatatcaagccccatggatgggcccctctgttctgctttctgttccagATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTggtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc Alignment from CESAR ATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg caaatatcaagccccatggatgggcccctctgttctgctttctgttccagATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTggtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc Alignment from Spaln_aa2Genome ATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caaatatcaagccccatggatgggcccctctgttctgctttctgttccagATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTGgtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc Alignment from Spaln_nt2Genome ATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caaatatcaagccccatggatgggcccctctgttctgctttctgttccagATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTGgtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc Alignment from Pairagon ATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caaatatcaagccccatggatgggcccctctgttctgctttctgttccagATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTGgtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc Alignment from Exonerate_protein2genome ATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caaatatcaagccccatggatgggcccctctgttctgctttctgttccagATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTGgtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc Alignment from Exonerate_coding2genome ATGCTCCAAGAGATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caaatatcaagccccatggatgggcccctctgttctgcTTTCTGTTCCAGATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTGgtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc Alignment from GeneWise CCGGCCCACATGCTCCAAGAGATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG agccccatggatgggcccctctgttctgc---------TTTCTGTTCCAGATCTCCAGTTCTTACACAACCACCACCACCATCACTGCACCTCCATCCGGAAATGAGCGAGAGAAGGTGAAGACAGTGCCCCTCCATCTGGAGGAAGACCTCCGTCCTCAAATGAAAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACCCAAACTGGAGTATGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTAGGAGGCCTGTATGGGATTATACTGATTCCCTCCTGTAAGCTCTTTACATGCCTTTTTGgtgagtatccctcatcctggtccagtgtctcagatttctgtttgctcttc #### Scd3_ID8973_2 --> 0 - 1 Original Alignment ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg gcaccatagtattagaggggagtgacttcagcccagcctttcccttgcagATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGA---GAGGTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTggtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc Alignment from CESAR ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg gcaccatagtattagaggggagtgacttcagcccagcctttcccttgcagATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGAGAG---GTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTggtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc Alignment from Spaln_aa2Genome ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattagaggggagtgacttcagcccagcctttcccttgcagATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGAGAG---GTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTGgtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc Alignment from Spaln_nt2Genome ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattagaggggagtgacttcagcccagcctttcccttgcagATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGAG---AGGTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTGgtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc Alignment from Pairagon ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattagaggggagtgacttcagcccagcctttcccttgcagATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGAG---AGGTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTGgtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc Alignment from Exonerate_protein2genome ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattagaggggagtgacttcagcccagcctttcccttgcagATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGAGAG---GTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTGgtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc Alignment from Exonerate_coding2genome ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattagaggggagtgacttcagcccagcctttcccttgcagATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGAGAG---GTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTGgtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc Alignment from GeneWise CCAGGGCACCTGCTGCAAGAAGAGATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattagaggggagtgacttcagcCCAGCCTTTCCCTTGCAG------ATGACGCCTTCATACACAACCACCACCACCATCACAGCACCTCCCTCTGGGAGCCTGCAGAATGGAAGAGAG---GTGAAAACAGTGCCTCTTTACCTGGAAGAAGACATCCGTCCTGAAATGAGAGAAGATATATATGACCCCACCTATCAGGATGAGGAAGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAACATCATTCTCATGGCCCTGCTACATGTTGGTGCCCTGCACGGGATCACACTGGTTCCCTCCTGCAAGCTCCATACCTGCCTCTTTGgtatgcaccttttactgttctgggttagtgagtgtaacagtttctccccc #### Scd4_ID8994_2 --> 0 - 1 Original Alignment ATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGg tcttgcaatctgatgtgtctgctactgatccctgaatttgtccccagcagATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGggtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt Alignment from CESAR ATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGg tcttgcaatctgatgtgtctgctactgatccctgaatttgtccccagcagATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGggtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt Alignment from Spaln_aa2Genome ATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGG tcttgcaatctgatgtgtctgctactgatccctgaatttgtccccagcagATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGGgtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt Alignment from Spaln_nt2Genome ATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGG tcttgcaatctgatgtgtctgctactgatccctgaatttgtccccagcagATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGGgtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt Alignment from Pairagon ATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGG tcttgcaatctgatgtgtctgctactgatccctgaatttgtccccagcagATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGGgtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt Alignment from Exonerate_protein2genome ATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGG tcttgcaatctgatgtgtctgctactgatccctgaatttgtccccagcagATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGGgtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt Alignment from Exonerate_coding2genome CCACAAGAGATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGG tcttgcaatctgatgtgtctgctactgatccctgaatttgtCCCCAGCAGATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGGgtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt Alignment from GeneWise ACGGCCCACTTGCCACAAGAGATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCGGCCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGGTCTACACCTGGCTCTTGG ctgatgtgtctgctactgatccctgaatt---------TGTCCCCAGCAGATCTCCAGCAGGTGTAGAACTACTAACATCATGGAACCCCACTCCCGGAGACAGAAGGATGGAGAAGAGAAGATGCCTCTTCAGGCAGAGGACATCCGACCTGAAATAAAAGATGATCTGTATGACCCCAGCTACCAAGATGAGGAGGGACCCCCACCCAAGCTTGAGTATGTCTGGAGGAACATCATCTTCATGGCCCTGCTGCATGTGGGAGCCCTATATGGGATCACACTTGTTCCCTCCTGCAAGGTCTTCACCTGGCTATTGGgtatgctccaccccttgccagcaccccatgtttcccccgcccccaacttt #### Scgb1a1_ID2589_2 --> 2 - 0 Original Alignment ctTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagctTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca Alignment from CESAR ctTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagctTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca Alignment from Spaln_aa2Genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca Alignment from Spaln_nt2Genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca Alignment from Pairagon CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca Alignment from Exonerate_protein2genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca Alignment from Exonerate_coding2genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca Alignment from GeneWise CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG cgcttagaaaacaagctacatgcttcctttaatgttggtgttctttttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAAGATATTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCCTACGgtaagacacatctgtcacacatattgattctaagtgatttgctaagcaca #### Sec31b_ID9033_19 --> 0 - 1 Original Alignment GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTg ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTggtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag Alignment from CESAR GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTg ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTggtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag Alignment from Spaln_aa2Genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag Alignment from Spaln_nt2Genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag Alignment from Pairagon GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag Alignment from Exonerate_protein2genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag Alignment from Exonerate_coding2genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag Alignment from GeneWise GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG ctacgtatggtgcacgatgtccgaaaatacctccccttgtgcctctccagGTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCATCATCAGTGATGCCCTTTAGCCCCTCCCAGCCTAGACCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTAAGGCCTGgtaactaaaggaagaactcttctggtggaatataaggtctcagtgaagag #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAggtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAggtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG tatattctggcttcagttggcatacagtattgttctccttatttttatagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGTGATCCCCACTACAGAAGgtggaatggtcctgggagagaggatataactgtataggggcaattgggaa #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcggacccggctggcattgtcctgtgtctccctaaagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtgagtttggagtctggtgaaactgactcctgggagtcaagagacatact #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from GeneWise ---GTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG--------------------- gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGCGAGTGGCAATTGCTTGAGAgtgttggagggaggagctttctgcgtgag #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct #### Sf1_ID1658_3 --> 2 - 2 Original Alignment tgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACag catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagtgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACaggtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc Alignment from CESAR tgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACag catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagtgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACaggtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc Alignment from Spaln_aa2Genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagTGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGgtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc Alignment from Spaln_nt2Genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagTGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGgtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc Alignment from Pairagon TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagTGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGgtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc Alignment from Exonerate_protein2genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagTGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGgtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc Alignment from Exonerate_coding2genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagTGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGgtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc Alignment from GeneWise TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG catccctttcacgattacccagttcttccctgtgcattcttctgtgtcagTGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGgtgagtaaacagttttcaccagctgactgtaatttttacccttttttttc #### Sf1_ID1665_6 --> 1 - 0 Original Alignment aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from CESAR aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_aa2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_nt2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Pairagon AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_protein2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_coding2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta Alignment from GeneWise AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG gagtaatctgaagaggagtaatttgccaactgtctgtttgccatgggcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAACGCCAAGATCATGATTCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagcgctgggcccgggagacctgataaccaatatatggtaggtgagta #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACcggtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACcggtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag #### Sf3b2_ID905_13 --> 0 - 0 Original Alignment GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt Alignment from CESAR GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt Alignment from Spaln_aa2Genome GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt Alignment from Spaln_nt2Genome GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt Alignment from Pairagon GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt Alignment from Exonerate_protein2genome GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt Alignment from Exonerate_coding2genome GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt Alignment from GeneWise GAAGAACAAAAAACCATGAAGTCAAAAATGAGAGAGAAGGTTCGGCCGAAGATGGGGAAGATCGACATTGACTACCAGAAGCTACACGATGCCTTCTTCAAGTGGCAGACCAAGCCGAAACTCACCATCCATGGGGACCTTTATTATGAG agacttgactactaacctaatagttcaccgcctgtgcttcccattttcagGAAGAACAAAACACCATGAAGTCAAAAATGAGAGAGAAAGTTCGGCCAAAGATGGGGAAGATTGATATTGACTATCAAAAGCTACACGATGCCTTTTTCAAGTGGCAGACCAAGCCAAAACTCACCTTTCATGGGGACCTTTATTATGAGgtcagtgaggaggcttgcggagggacaaggctgagtctttgtgttgaatt #### Sf3b2_ID906_12 --> 0 - 0 Original Alignment CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg Alignment from CESAR CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg Alignment from Spaln_aa2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg Alignment from Spaln_nt2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg Alignment from Pairagon CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg Alignment from Exonerate_protein2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg Alignment from Exonerate_coding2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg Alignment from GeneWise CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG catagggaattcatgatcatttctattaatctcgcctttccacttgacagCTGGTGGCCCGGCCCGATGTTGTGGAGATGCATGATGTGACAGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAGGCCCTACAGGAGAAGgtaggacaaggctggggcacaacctcttttagcagcttgcctccgacttg #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATTGAT---CCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat #### Sfxn2_ID9964_2 --> 1 - 2 Original Alignment gATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACag ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcaggATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACaggtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt Alignment from CESAR gATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACag ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcaggATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACaggtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt Alignment from Spaln_aa2Genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcagGATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt Alignment from Spaln_nt2Genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcagGATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt Alignment from Pairagon GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcagGATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt Alignment from Exonerate_protein2genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcagGATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt Alignment from Exonerate_coding2genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcagGATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt Alignment from GeneWise GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG ttaaaggtcaaggtttgggtcagagtccgcttgttctttcgatgctgcagGATGGGACTTGTACCCCCAGGCACCCAGATGGAGCAGCTGCTATATGCGAAGAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtaggcctcaaatgttggagtgaccaagtgggcctacatacagaaaatgt #### Sfxn3_ID9284_2 --> 1 - 2 Original Alignment gGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag acagctctgacttctgccacagccccttaaccagtcctcatatctggtaggGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACaggtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from CESAR gGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag acagctctgacttctgccacagccccttaaccagtcctcatatctggtaggGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACaggtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Spaln_aa2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Spaln_nt2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Pairagon GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Exonerate_protein2genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Exonerate_coding2genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from GeneWise GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct #### Sgms1_ID6687_2 --> 1 - 0 Original Alignment gTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcaggTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt Alignment from CESAR gTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcaggTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt Alignment from Spaln_aa2Genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcagGTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt Alignment from Spaln_nt2Genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcagGTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt Alignment from Pairagon GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcagGTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt Alignment from Exonerate_protein2genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcagGTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt Alignment from Exonerate_coding2genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcagGTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt Alignment from GeneWise GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG actgtagaatcttttgactggaaatctggaatgttcctctccttttgcagGTCTATTATTAGCCGAAGATTTTTCTGCATAGTTGGCACACTGTACCTGTATCAGTGTATTACAATG---GTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTTCGAAGgtaagctactccaccaagtccatccctcacttttgtatatttattttctt #### Sh3pxd2a_ID10169_13 --> 2 - 0 Original Alignment gcTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttataggcTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa Alignment from CESAR gcTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttataggcTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa Alignment from Spaln_aa2Genome GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttatagGCTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa Alignment from Spaln_nt2Genome GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttatagGCTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa Alignment from Pairagon GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttatagGCTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa Alignment from Exonerate_protein2genome GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttatagGCTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa Alignment from Exonerate_coding2genome GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttatagGCTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa Alignment from GeneWise GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTG tgctaggatactcaatgttactgctctttaatattctatcacctttatagGCTCTCCAAACCTGAGGACTAGACCTCCTCCGCGCAGGGAATCTAGCCTGgtgtgtagactgtctctccatcccttctgagactactcccagatcccaaa #### Sh3pxd2a_ID10187_8 --> 2 - 1 Original Alignment gtGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCg tgggactactgccagcctctgtctcacctttgacttttttttttttctaggtGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCggtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact Alignment from CESAR gtGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCg tgggactactgccagcctctgtctcacctttgacttttttttttttctaggtGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCggtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact Alignment from Spaln_aa2Genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG tgggactactgccagcctctgtctcacctttgacttttttttttttctagGTGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCGgtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact Alignment from Spaln_nt2Genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG tgggactactgccagcctctgtctcacctttgacttttttttttttctagGTGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCGgtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact Alignment from Pairagon GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG tgggactactgccagcctctgtctcacctttgacttttttttttttctagGTGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCGgtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact Alignment from Exonerate_protein2genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG tgggactactgccagcctctgtctcacctttgacttttttttttttctagGTGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCGgtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact Alignment from Exonerate_coding2genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG tgggactactgccagcctctgtctcacctttgacttttttttttttctagGTGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCGgtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact Alignment from GeneWise GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG tgggactactgccagcctctgtctcacctttgacttttttttttttctagGTGCTGACACCAACGCCGAGCCCATGATCCTGGAACAGTATGTGGTGGTGTCAAACTATAAGAAACAAGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATCGATAAGAATGAAAGCGgtaagtgcatgtcctctcgtggtcccagccttgctctcctgaggccgact #### Sh3pxd2a_ID10190_7 --> 2 - 1 Original Alignment tgTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAg ctatctaatggttttctatactgcttctacacagagctcttcctatgcagtgTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCggtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg Alignment from CESAR tgTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAg ctatctaatggttttctatactgcttctacacagagctcttcctatgcagtgTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCggtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg Alignment from Spaln_aa2Genome TGTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAG ctatctaatggttttctatactgcttctacacagagctcttcctatgcagTGTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCGgtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg Alignment from Spaln_nt2Genome TGTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAG ctatctaatggttttctatactgcttctacacagagctcttcctatgcagTGTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCGgtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg Alignment from Pairagon TGTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAG ctatctaatggttttctatactgcttctacacagagctcttcctatgcagTGTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCGgtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg Alignment from Exonerate_protein2genome TGTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAG ctatctaatggttttctatactgcttctacacagagctcttcctatgcagTGTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCGgtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg Alignment from Exonerate_coding2genome AGACTATGGCAGTTCCAAGAGGAAATCAGTGTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAG ctatctaatggttttctatacTGCTTCTACACAGAGCTCTTCCTATGCAGTGTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCGgtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg Alignment from GeneWise -GAAGACTATGGCAGTTCCAAGAGGAAATCAGTGTGGTTGTCCAGCTGGGCTGAGTCTCCCAAGAAGGACGTGACAG tactgcttctacacagagCTCTTCCTAT------------------GCAGTGTGGTTGTCCGGCTGGGCTGAGTCTCCCAAGAACGATGTGACCGgtgagttcacacatgaatccagtgtgttaacagcactgtcccagaatatg #### Sh3pxd2a_ID10196_5 --> 0 - 2 Original Alignment GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAga tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAgagtgagtagtggcatgaccgggggacaaatcagatgtctgtcgggaggaaa Alignment from CESAR GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAga tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAgagtgagtagtggcatgaccgggggacaaatcagatgtctgtcgggaggaaa Alignment from Spaln_aa2Genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAgtgagtagtggcatgaccgggggacaaatcagatgtctgtcgggaggaaa Alignment from Spaln_nt2Genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAgtgagtagtggcatgaccgggggacaaatcagatgtctgtcgggaggaaa Alignment from Pairagon GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAgtgagtagtggcatgaccgggggacaaatcagatgtctgtcgggaggaaa Alignment from Exonerate_protein2genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAgtgagtagtggcatgaccgggggacaaatcagatgtctgtcgggaggaaa Alignment from Exonerate_coding2genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAAGACTATGGCAGTTCCAAGAGGAAATC tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAGTGAGTAGTGGCATGACCGGGGGACAAatcagatgtctgtcgggaggaaa Alignment from GeneWise GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA tgctctctaaaacctcatacccaacaacttaactcatgccttgtttccagGCGCTTGTTCGGCTGCCACCCCACATTTCACAATGTGACGAAGTTTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAgtgagtagtggcatgaccgggggacaaatcagatgtctgtcgggaggaaa #### Shoc2_ID11415_2 --> 2 - 1 Original Alignment gtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAg aattagctaattattctttaatgcctacccccttctcttttgtacactaggtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAggtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt Alignment from CESAR gtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAg aattagctaattattctttaatgcctacccccttctcttttgtacactaggtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAggtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt Alignment from Spaln_aa2Genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG aattagctaattattctttaatgcctacccccttctcttttgtacactagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt Alignment from Spaln_nt2Genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG aattagctaattattctttaatgcctacccccttctcttttgtacactagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt Alignment from Pairagon GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG aattagctaattattctttaatgcctacccccttctcttttgtacactagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt Alignment from Exonerate_protein2genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG aattagctaattattctttaatgcctacccccttctcttttgtacactagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt Alignment from Exonerate_coding2genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG aattagctaattattctttaatgcctacccccttctcttttgtacactagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt Alignment from GeneWise GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG aattagctaattattctttaatgcctacccccttctcttttgtacactagGTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAGgtaagtggggaggatacaaacccttctgttaccaattagggaaaatcctt #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga gccaggtggatgtttactccctcagacccctctccaactctggtccccagggCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTgagtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga gccaggtggatgtttactccctcagacccctctccaactctggtccccagggCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTgagtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Exonerate_protein2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from Exonerate_coding2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg Alignment from GeneWise GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccaggtggatgtttactccctcagacccctctccaactctggtccccagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagctttccgccctaacatacccactcttgtgtttgtgtacttgcctg #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc #### Slc16a12_ID6974_4 --> 2 - 2 Original Alignment gtCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAag tcttgtccactcacagcaaaccaccattttttttttttttttaaatttaggaCTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAaggtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc Alignment from CESAR gtCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAag tcttgtccactcacagcaaaccaccattttttttttttttttaaatttaggaCTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAaggtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc Alignment from Spaln_aa2Genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcttgtccactcacagcaaaccaccattttttttttttttttaaatttagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAAGgtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc Alignment from Spaln_nt2Genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcttgtccactcacagcaaaccaccattttttttttttttttaaatttagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAAGgtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc Alignment from Pairagon GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcttgtccactcacagcaaaccaccattttttttttttttttaaatttagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAAGgtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc Alignment from Exonerate_protein2genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcttgtccactcacagcaaaccaccattttttttttttttttaaatttagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAAGgtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc Alignment from Exonerate_coding2genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcttgtccactcacagcaaaccaccattttttttttttttttaaatttagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAAGgtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc Alignment from GeneWise GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcttgtccactcacagcaaaccaccattttttttttttttttaaatttagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCCATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTAGCT------------CTCCTCATTGAACAGTTTTCCTGGCGCGGAGCACTTCTCATTCTTGGTGGGGCCATTCTGAATCTCTGTGTTTGCGGTGCCCTGATGCATCCAATTACCCTCAAAGAGGACCGATCAGTCCCAGAACGGAATCACAACCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCTCCC---TCACCACTGACCAAAGAATGTACAGAGACCCGCCTTTGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGTTTTATTCATGGCCTACGGCTGTAGCCCTCTTTCTGTGTATCTAGTGCCATATGCATTGAGTGTCGGAGTAAGCCACCATCAGGCTGCTTTCCTAATGTCCATCCTCGGGGTAATTGATATAGTTGGCAATATCACATTTGGCTGGCTAACTGATAGAAGgtaccttctggggcaagctgtaacttgcttttcctaggacgctttaattc #### Slc18a2_ID12941_9 --> 2 - 1 Original Alignment gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcaggcTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGggtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc Alignment from CESAR gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcaggcTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGggtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc Alignment from Spaln_aa2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc Alignment from Spaln_nt2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc Alignment from Pairagon GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc Alignment from Exonerate_protein2genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc Alignment from Exonerate_coding2genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc Alignment from GeneWise GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gacactcaggatgaaggtcccggcacaccctgtaatgtttcccctcgcagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATGCTGGAACCCGCCCTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtaagaacttgggtgggtcccatttatttacctgccctgcaagaccaccc #### Slc1a1_ID6162_2 --> 2 - 1 Original Alignment gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcaggaATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAggtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc Alignment from CESAR gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcaggaATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAggtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc Alignment from Spaln_aa2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAGgtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc Alignment from Spaln_nt2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAGgtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc Alignment from Pairagon GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAGgtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc Alignment from Exonerate_protein2genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAGgtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc Alignment from Exonerate_coding2genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAGgtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc Alignment from GeneWise GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG atgtgcgagagaactgaaaatgtttctctctttgttcttctgcatttcagGAATTGTCTTGGGAGTTGTGGTCCGAGGACGCAGTGGGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTTCTGGGGAAATTCTGATGAGGATGCTGAAGCTGGTCATTTTGCCACTGATCATATCTAGCATGATCACAGgtgagtggtgttctctgatcattttaggagtgtatgaggaccatggttgc #### Slc1a1_ID6164_3 --> 2 - 1 Original Alignment gtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAg ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacaggtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAggtgaggcttatctctgattccttggttctctttgtttgccattgcaactt Alignment from CESAR gtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAg ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacaggtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAggtgaggcttatctctgattccttggttctctttgtttgccattgcaactt Alignment from Spaln_aa2Genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgaggcttatctctgattccttggttctctttgtttgccattgcaactt Alignment from Spaln_nt2Genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgaggcttatctctgattccttggttctctttgtttgccattgcaactt Alignment from Pairagon GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgaggcttatctctgattccttggttctctttgtttgccattgcaactt Alignment from Exonerate_protein2genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgaggcttatctctgattccttggttctctttgtttgccattgcaactt Alignment from Exonerate_coding2genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgaggcttatctctgattccttggttctctttgtttgccattgcaactt Alignment from GeneWise GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggtctcaccttgccctttctacagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTTTGCGCGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgaggcttatctctgattccttggttctctttgtttgccattgcaactt #### Slc1a1_ID6166_5 --> 1 - 0 Original Alignment gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac Alignment from CESAR gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac Alignment from Spaln_aa2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac Alignment from Spaln_nt2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac Alignment from Pairagon GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac Alignment from Exonerate_protein2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac Alignment from Exonerate_coding2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac Alignment from GeneWise GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggcatgcttcccttacaagcgctgtccttctctttcccccagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagatcaatagctttcgtcctaagttggcccatcaaaacatacagcac #### Slc1a1_ID6170_8 --> 1 - 2 Original Alignment cTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCgg gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagcTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTgggtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta Alignment from CESAR cTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCgg gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagcTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTgggtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta Alignment from Spaln_aa2Genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagCTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTGGgtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta Alignment from Spaln_nt2Genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagCTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTGGgtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta Alignment from Pairagon CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagCTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTGGgtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta Alignment from Exonerate_protein2genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagCTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTGGgtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta Alignment from Exonerate_coding2genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagCTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTGGgtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta Alignment from GeneWise CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG gagaaaacttgtgacatcggaattgtgctcgccccctcttttccccgcagCTATATGCCAATTGGTATTTTGTTCTTGATTGGTGGGAAGATCATAGAAGTTGAAGACTGGGAGATATTCCGCAAGCTGGGGCTCTACATGGCCACTGTGCTGAGTGGgtgagtctgactcaagagaagtgaaaaagctccctgcagatttggggtta #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATggtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttaggTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATggtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctaatctgtctaacaaccccatgtccctccttagGTTTGCCTTTGGCTTCACCTTCTATGGCCTGGCCCTTGACCTGCAAGCCCTTGGAAGCAATATATTCCTGCTCCAGTCAATTATTGGGATTGTGGATTTCCCGGTGAAGACAGGCAGCTTGCTCTTGATCAGCCGCTTGGGCCAACGCCTTTGTCAGGTCAGCTTCCTGGTGCTCCCTGGACTCTGCATCCTTTCCAATATACTGGTGCCCCATGgtacgttgccatctggctgagggtgagcataaggacgcaaaactgtggtg #### Slc22a19_ID2205_8 --> 2 - 2 Original Alignment aaATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCag agagttatctatctgtctcactatactaaaccatgccttcctccatgcagaaATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCaggtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg Alignment from CESAR aaATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCag agagttatctatctgtctcactatactaaaccatgccttcctccatgcagaaATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCaggtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg Alignment from Spaln_aa2Genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatctatctgtctcactatactaaaccatgccttcctccatgcagAAATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCAGgtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg Alignment from Spaln_nt2Genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatctatctgtctcactatactaaaccatgccttcctccatgcagAAATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCAGgtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg Alignment from Pairagon AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatctatctgtctcactatactaaaccatgccttcctccatgcagAAATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCAGgtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg Alignment from Exonerate_protein2genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatctatctgtctcactatactaaaccatgccttcctccatgcagAAATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCAGgtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg Alignment from Exonerate_coding2genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatctatctgtctcactatactaaaccatgccttcctccatgcagAAATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCAGgtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg Alignment from GeneWise AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatctatctgtctcactatactaaaccatgccttcctccatgcagAAATGCAGATCCTGCGTGGATTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGCTTTTCCCCACCATAATCAGgtgagtcccagggtcatagcagagtttcttcagtccaatcacttttactg #### Slc22a19_ID2210_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCa ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacaggTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCagtaagccaaagatttttttattgggtggggggggtttgtttttatcctta Alignment from CESAR gTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCa ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacaggTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCagtaagccaaagatttttttattgggtggggggggtttgtttttatcctta Alignment from Spaln_aa2Genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacagGTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCAgtaagccaaagatttttttattgggtggggggggtttgtttttatcctta Alignment from Spaln_nt2Genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacagGTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCAgtaagccaaagatttttttattgggtggggggggtttgtttttatcctta Alignment from Pairagon GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacagGTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCAgtaagccaaagatttttttattgggtggggggggtttgtttttatcctta Alignment from Exonerate_protein2genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacagGTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCAgtaagccaaagatttttttattgggtggggggggtttgtttttatcctta Alignment from Exonerate_coding2genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacagGTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCAgtaagccaaagatttttttattgggtggggggggtttgtttttatcctta Alignment from GeneWise -TTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA ggctgcgaagtaagtaactcaccaccccgttgttctttcttcccccacagGTTTGGGAGGAAGCTCATTTTCACTTGCTCTTTACTGAAAATGGCCATTACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTTCTGTCAGGCATTTTTTCATCAACCCTGAGGACAAATAGTGCTCTGCTCAgtaagccaaagatttttttattgggtggggggggtttgtttttatcctta #### Slc22a26_ID2217_8 --> 2 - 2 Original Alignment aaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGT------------GAGCTGATGCCCACGGTGATCag ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagaaATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCaggtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg Alignment from CESAR aaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATAT------------TCAAGTGAGCTGATGCCCACGGTGATCag ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagaaATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCaggtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg Alignment from Spaln_aa2Genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTT------------CTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagAAATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCAGgtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg Alignment from Spaln_nt2Genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTA------------TATTCAAGTGAGCTGATGCCCACGGTGATCAG ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagAAATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCAGgtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg Alignment from Pairagon AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGT------------TCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagAAATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCAGgtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg Alignment from Exonerate_protein2genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTT------------CTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagAAATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCAGgtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg Alignment from Exonerate_coding2genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTT------------CTATATTCAAGTGAGCTGATGCCCACGGTGATCAG ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagAAATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCAGgtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg Alignment from GeneWise AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATAT------------TCAAGTGAGCTGATGCCCACGGTGATCAG ctgatagtgctacattctgcataaattcgcctttctctcccctcatccagAAATGCAGACTTTGCTAGTGGTTTTGATAACACTTGCAGGAGGGAGTTCTGCCATGATTTATAACAGTAATGTTCTCTATTCAAGTCTCTATTCAAGTGAGCTGATGCCTACAGTGATCAGgtgagtgactttttatcaacagaggtcaattgtaatgatagcaaatatgg #### Slc22a26_ID2218_7 --> 1 - 1 Original Alignment aTTTCTACAAATATCACCTACTGTAGGG---ATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAg agaaacatggattttaagcctataatgtttttttttcctcccttgcctagaTTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAggtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat Alignment from CESAR aTTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAg agaaacatggattttaagcctataatgtttttttttcctcccttgcctagaTTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAggtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat Alignment from Spaln_aa2Genome ATTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG agaaacatggattttaagcctataatgtttttttttcctcccttgcctagATTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAGgtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat Alignment from Spaln_nt2Genome ATTTCTACAAATATCACCTACTGTAGG---GATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG agaaacatggattttaagcctataatgtttttttttcctcccttgcctagATTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAGgtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat Alignment from Pairagon ATTTCTACAAATATCACCTACT---GTAGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG agaaacatggattttaagcctataatgtttttttttcctcccttgcctagATTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAGgtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat Alignment from Exonerate_protein2genome ATTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG agaaacatggattttaagcctataatgtttttttttcctcccttgcctagATTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAGgtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat Alignment from Exonerate_coding2genome ATTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG agaaacatggattttaagcctataatgtttttttttcctcccttgcctagATTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAGgtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat Alignment from GeneWise ATTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCTCAAG agaaacatggattttaagcctataatgtttttttttcctcccttgcctagATTCCTACAAATTTCACCTACTTTAGGAGGGATCAACATGAACCTCCGACATTTGAAAGGCAATGTATTCCTAACCCAGAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCCCTTGGAGGGTTTTTACCAAATTACATTGGTCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTGAGCATAGTGTCTGTGCCCCAAGgtaactaatgaccttaacaaaaagaaaagtagtaccaagtcccttttaat #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggttcttccctttgttgttagcagttactttttctctcctgcttctcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCaggtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggttcttccctttgttgttagcagttactttttctctcctgcttctcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCaggtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggttcttccctttgttgttagcagttactttttctctcctgcttctcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGACTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACCAGgtatcaacttttgattctcctctgtattttgaaattgtggggtaaccgtc #### Slc22a27_ID2230_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tattacagccaagctgaactaaccactagcaagtctgcatctcattccagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggtgagcattttggctcaatcagatctctctggcagggaacctatctagct Alignment from CESAR aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tattacagccaagctgaactaaccactagcaagtctgcatctcattccagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggtgagcattttggctcaatcagatctctctggcagggaacctatctagct Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactagcaagtctgcatctcattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtgagcattttggctcaatcagatctctctggcagggaacctatctagct Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactagcaagtctgcatctcattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtgagcattttggctcaatcagatctctctggcagggaacctatctagct Alignment from Pairagon AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactagcaagtctgcatctcattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtgagcattttggctcaatcagatctctctggcagggaacctatctagct Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactagcaagtctgcatctcattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtgagcattttggctcaatcagatctctctggcagggaacctatctagct Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactagcaagtctgcatctcattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtgagcattttggctcaatcagatctctctggcagggaacctatctagct Alignment from GeneWise AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagctgaactaaccactagcaagtctgcatctcattccagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtgagcattttggctcaatcagatctctctggcagggaacctatctagct #### Slc22a27_ID2231_7 --> 1 - 1 Original Alignment aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg attatggaatcaagttctagtacattgattttttttttttgcccttaaagaCTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGagtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta Alignment from CESAR aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg attatggaatcaagttctagtacattgattttttttttttgcccttaaagaCTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGagtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta Alignment from Spaln_aa2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG attatggaatcaagttctagtacattgattttttttttttgcccttaaagACTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGAgtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta Alignment from Spaln_nt2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG attatggaatcaagttctagtacattgattttttttttttgcccttaaagACTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGAgtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta Alignment from Pairagon ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG attatggaatcaagttctagtacattgattttttttttttgcccttaaagACTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGAgtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta Alignment from Exonerate_protein2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG attatggaatcaagttctagtacattgattttttttttttgcccttaaagACTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGAgtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta Alignment from Exonerate_coding2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG attatggaatcaagttctagtacattgattttttttttttgcccttaaagACTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGAgtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta Alignment from GeneWise ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG attatggaatcaagttctagtacattgattttttttttttgcccttaaagACTTTTTTTTACAGTGTCAATTTTTGGTCTGGCAGTTCACCTCCAACACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTAGTCAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCACATCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCACAGAgtgagtgaagagttacagctaagcaaaaaatagattaagagaaaaaagta #### Slc22a28_ID2242_9 --> 1 - 2 Original Alignment gGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATga ttaagttccttccagattttcttgtatcattcaccgttgtacccccacaggGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATgagtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta Alignment from CESAR gGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATga ttaagttccttccagattttcttgtatcattcaccgttgtacccccacaggGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATgagtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta Alignment from Spaln_aa2Genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA ttaagttccttccagattttcttgtatcattcaccgttgtacccccacagGGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATGAgtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta Alignment from Spaln_nt2Genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA ttaagttccttccagattttcttgtatcattcaccgttgtacccccacagGGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATGAgtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta Alignment from Pairagon GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA ttaagttccttccagattttcttgtatcattcaccgttgtacccccacagGGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATGAgtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta Alignment from Exonerate_protein2genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA ttaagttccttccagattttcttgtatcattcaccgttgtacccccacagGGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATGAgtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta Alignment from Exonerate_coding2genome GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA ttaagttccttccagattttcttgtatcattcaccgttgtacccccacagGGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATGAgtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta Alignment from GeneWise GGCAACAGGTATGGGAGTCATTGGAATGTTTGGTAATAGTGGATTATTCCTGGCCCCCCTGTTTATGCTGTTAGCAACATACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTTCCTGAAACCAAGAATCAACCTCTTCCTGACTCCATCCATGATGTAGGAAATGA ttaagttccttccagattttcttgtatcattcaccgttgtacccccacagGGTAACAGGAATGGGAGTCATTGGAATGTTTGGTAATAGTGGGTTATTCCTGGCCCCTCTGTTTATGCTGTTAGCAACCTACTCTGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCTATCCTCTATGGGTTTAGTGTGTTTCTCCTCCCTGAAACCAAGAATCAACCTATTCCTGACTCCATCCATGATGTTGGAAATGAgtaaataaatcttcttagtgtcctttaacaattcatttgctagtggatta #### Slc22a28_ID2247_4 --> 2 - 2 Original Alignment ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagtaTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTG---GTTCTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAaggttagaacttgctttcctatcccggatatagaattctgtgacaatattga Alignment from CESAR ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagtaTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTGGTT---CTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAaggttagaacttgctttcctatcccggatatagaattctgtgacaatattga Alignment from Spaln_aa2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagTATTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTGGTT---CTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAAGgttagaacttgctttcctatcccggatatagaattctgtgacaatattga Alignment from Spaln_nt2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagTATTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTGG---TTCTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAAGgttagaacttgctttcctatcccggatatagaattctgtgacaatattga Alignment from Pairagon TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagTATTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTGG---TTCTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAAGgttagaacttgctttcctatcccggatatagaattctgtgacaatattga Alignment from Exonerate_protein2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagTATTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTGGTT---CTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAAGgttagaacttgctttcctatcccggatatagaattctgtgacaatattga Alignment from Exonerate_coding2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagTATTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTGGTT---CTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAAGgttagaacttgctttcctatcccggatatagaattctgtgacaatattga Alignment from GeneWise TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG aaactttggtctttactgtcaaatcccatggcctattttaacctctgcagTATTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCGGTTCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAAGCCTGGTT---CTGTTTAGAATCTGGCATCACCTCCAGCTTGCAATGTCTGTGCCAATCTACTTCTTCTTTATACTCACAAGgttagaacttgctttcctatcccggatatagaattctgtgacaatattga #### Slc22a28_ID2248_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCa aaacaacctggatctactgtctaattgaaggcctcactcttccttcacaggTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCagtaaggcacagattctgagatgggccctgggtcaaactttggtctttact Alignment from CESAR gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCa aaacaacctggatctactgtctaattgaaggcctcactcttccttcacaggTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCagtaaggcacagattctgagatgggccctgggtcaaactttggtctttact Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aaacaacctggatctactgtctaattgaaggcctcactcttccttcacagGTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCAgtaaggcacagattctgagatgggccctgggtcaaactttggtctttact Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aaacaacctggatctactgtctaattgaaggcctcactcttccttcacagGTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCAgtaaggcacagattctgagatgggccctgggtcaaactttggtctttact Alignment from Pairagon GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aaacaacctggatctactgtctaattgaaggcctcactcttccttcacagGTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCAgtaaggcacagattctgagatgggccctgggtcaaactttggtctttact Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aaacaacctggatctactgtctaattgaaggcctcactcttccttcacagGTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCAgtaaggcacagattctgagatgggccctgggtcaaactttggtctttact Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aaacaacctggatctactgtctaattgaaggcctcactcttccttcacagGTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCAgtaaggcacagattctgagatgggccctgggtcaaactttggtctttact Alignment from GeneWise GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCGATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTTACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTAACTTGCTCA aaacaacctggatctactgtctaattgaaggcctcactcttccttcacagGTTTGGAAGGAAGTTCATATTAACATGTGCCTTATTACAATTTGCAATCACTGAAACCTGTGTAGCTTTCGCTCCTTCCTTCTTCATCTACTGCTTACTTCGCTTCCTGGCCGGAATGTCCGTGGAACCCACATCAGTAAATAGTAACTTGCTCAgtaaggcacagattctgagatgggccctgggtcaaactttggtctttact #### Slc22a28_ID2249_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACag atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACaggtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc Alignment from CESAR TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACag atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACaggtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAGgtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAGgtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc Alignment from Pairagon TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAGgtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAGgtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAGgtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc Alignment from GeneWise TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacaatagtttcagatctgtgcatatgcgtgtgtacagTGGGACCTGGTATGTGAATCTAAGGCACTTAACTCCATTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAGgtaagcgtgttaaaatttcacacctactctccatggcttttagaagctgc #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACaggtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACaggtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agatttcttgtgctcttccctgttcaacaaaaaatgtgttcttgtttcagTGGAACCTTGTCTGCTCTCATAGAGCCTTCCACCAATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGCTACCTGGCGGACAGgtaagtcctggggagccaaagtgctcagttgaagtgggattgggggtacc #### Slc22a6_ID2287_8 --> 2 - 2 Original Alignment gcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTcg ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctaggcCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTcggtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg Alignment from CESAR gcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTcg ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctaggcCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTcggtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg Alignment from Spaln_aa2Genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctagGCCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTCGgtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg Alignment from Spaln_nt2Genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctagGCCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTCGgtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg Alignment from Pairagon GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctagGCCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTCGgtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg Alignment from Exonerate_protein2genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctagGCCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTCGgtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg Alignment from Exonerate_coding2genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctagGCCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTCGgtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg Alignment from GeneWise GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG ctactacctcaccccctgtgctccctgtctccttcttgtcctcgttctagGCCATACAATCATTCAGACATCCCTAGCTGTACTAGGGAAAGGCTGCCTGTCTTCTTCCTTCAACTGCATTTACCTTTACACCGGAGAGCTGTACCCCACAATGATTCGgtaggggagaccctagtacatgtgtgaatagggtagagagtcacatcttg #### Slc22a8_ID2271_4 --> 2 - 2 Original Alignment atGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCtg agtgctggggccaacaagacactgatttccttgtgttttccacccccaagatGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCtggtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg Alignment from CESAR atGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCtg agtgctggggccaacaagacactgatttccttgtgttttccacccccaagatGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCtggtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg Alignment from Spaln_aa2Genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG agtgctggggccaacaagacactgatttccttgtgttttccacccccaagATGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCTGgtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg Alignment from Spaln_nt2Genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG agtgctggggccaacaagacactgatttccttgtgttttccacccccaagATGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCTGgtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg Alignment from Pairagon ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG agtgctggggccaacaagacactgatttccttgtgttttccacccccaagATGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCTGgtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg Alignment from Exonerate_protein2genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG agtgctggggccaacaagacactgatttccttgtgttttccacccccaagATGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCTGgtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg Alignment from Exonerate_coding2genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG agtgctggggccaacaagacactgatttccttgtgttttccacccccaagATGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCTGgtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg Alignment from GeneWise ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG agtgctggggccaacaagacactgatttccttgtgttttccacccccaagATGTGGAATGGGTGCCAACCTCCACACGGGCAATCTCATCAACAACAATTGGGTACTGCTACACCATTAGTAAATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAATTGTCTGTATCTGCGGCCTTCTTTATCTTTTCCTTGTTGTCCTGgtaagtgggccatttttctgtgctcagtcaagaccactcatctttctttg #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacaggCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACtggtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacaggCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACtggtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG tttaaaagtcttaggcactggcccgcaactcacccgaaggtgtcttacagGCAAACAGGTATGGGTATCAGTAACATATGGGCTCGGGTGGGAAGTATGATAGCCCCATTGGTGAAAGTCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTAGGAGGCAGTGCTGCCTTTTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACCATCAAGGACATACAAGACTGgtgagctcttcacctctgtcacacatgttcccgcaaacaggccagggtgc #### Slc29a2_ID790_4 --> 1 - 1 Original Alignment cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagcATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATtgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from CESAR cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagcATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATtgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Spaln_aa2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Spaln_nt2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Pairagon CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Exonerate_protein2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Exonerate_coding2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from GeneWise CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc #### Slc29a2_ID793_7 --> 0 - 1 Original Alignment AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTggtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag Alignment from CESAR AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTg aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTggtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag Alignment from Spaln_aa2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTGgtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag Alignment from Spaln_nt2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTGgtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag Alignment from Pairagon AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTGgtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag Alignment from Exonerate_protein2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTGgtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag Alignment from Exonerate_coding2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTGgtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag Alignment from GeneWise AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGCTGGAGACTAAAGCTGAGCTCCTCCAAGCTG aagcattcattgaggccttatgcaggaccaccctcccccctgctgcccagAAGTTTGCCCGTTACTACCTGACCGAGAAACTATCTCAGGCTCCAACTCAGGAGCTTGAGAATAAAGCTGAGCTCCTCCAAGCTGgtgagacccaagatcctttggggatgtgggagtactgagttccgtatcag #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACaggtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from CESAR AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACaggtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Pairagon AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Exonerate_coding2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from GeneWise AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag #### Slit1_ID8202_36 --> 1 - 1 Original Alignment gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg ctcctctgggctagcctggcctcaaaaccataataaatactttttttcaggTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAggtatgtgcccccccctgattgccctctggcaggatccctccccatgattc Alignment from CESAR gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg ctcctctgggctagcctggcctcaaaaccataataaatactttttttcaggTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAggtatgtgcccccccctgattgccctctggcaggatccctccccatgattc Alignment from Spaln_aa2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG ctcctctgggctagcctggcctcaaaaccataataaatactttttttcagGTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAGgtatgtgcccccccctgattgccctctggcaggatccctccccatgattc Alignment from Spaln_nt2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG ctcctctgggctagcctggcctcaaaaccataataaatactttttttcagGTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAGgtatgtgcccccccctgattgccctctggcaggatccctccccatgattc Alignment from Pairagon GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG ctcctctgggctagcctggcctcaaaaccataataaatactttttttcagGTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAGgtatgtgcccccccctgattgccctctggcaggatccctccccatgattc Alignment from Exonerate_protein2genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG ctcctctgggctagcctggcctcaaaaccataataaatactttttttcagGTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAGgtatgtgcccccccctgattgccctctggcaggatccctccccatgattc Alignment from Exonerate_coding2genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG ctcctctgggctagcctggcctcaaaaccataataaatactttttttcagGTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAGgtatgtgcccccccctgattgccctctggcaggatccctccccatgattc Alignment from GeneWise GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG ctcctctgggctagcctggcctcaaaaccataataaatactttttttcagGTGTGTCCATGGGAAATGCGTGCCGCTTGATGCCCTTGCATACAGCTGCCAGTGCCAGGATGGGTACTCAGGGGCTCTGTGCAATCAGGTGGGAGCTGTGGCCGATCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCGCACTGTGTGTGCAGCCCAGGCTTTTCAGGCAAGCTATGTGAACAAGgtatgtgcccccccctgattgccctctggcaggatccctccccatgattc #### Slit1_ID8203_35 --> 2 - 2 Original Alignment ggATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaa acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagggATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaagtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt Alignment from CESAR ggATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaa acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagggATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACaagtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt Alignment from Spaln_aa2Genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagGGATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt Alignment from Spaln_nt2Genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagGGATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt Alignment from Pairagon GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagGGATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt Alignment from Exonerate_protein2genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagGGATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt Alignment from Exonerate_coding2genome GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagGGATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt Alignment from GeneWise GGATGCCTGTGGACGTGAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACATCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTGCCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAA acagtcatgtcttagtcccattagcttactttgctctgttccctgcttagGGATGCCTGTGGATGTGAACCCAGCTGCCTTCCGCCTGTGGCCAATCCTCAATGGTACCAGCTTCCACAGTTGCATCCGGAACCTGTACGTCAACAACGAACTGCAGGACTTCACCAAGACACAGACAAAGCCAGGTGTTGTGCCAGGCTGCGAGCCATGCCGCAAACTCTACTGTTTACATGGTATCTGCCAGCCCAACGCCACCCCGGGGCCTGTGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAgtaagtccaggttggaccaagagagctatccactcaccagctgtcctttt #### Slit1_ID8211_28 --> 0 - 2 Original Alignment GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCac gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCacgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa Alignment from CESAR GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCac gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCacgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa Alignment from Spaln_aa2Genome GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCACgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa Alignment from Spaln_nt2Genome GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCACgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa Alignment from Pairagon GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCACgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa Alignment from Exonerate_protein2genome GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCACgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa Alignment from Exonerate_coding2genome GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCACgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa Alignment from GeneWise GGCCGACACTGTGAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC gataacaccctaggcactcccttgagtcctccaagatctgccccaaacagGGCAGACACTGTGAGGTGTCACTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAAGGAGAAGATGCTGGCTTCACgtgaggtgcctggagccttagagtgtgttgggggctgctgctgggcccaa #### Slit1_ID8220_19 --> 1 - 2 Original Alignment gATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACAct tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagaATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACActgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga Alignment from CESAR gATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACAct tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagaATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACActgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga Alignment from Spaln_aa2Genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagAATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga Alignment from Spaln_nt2Genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagAATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga Alignment from Pairagon GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagAATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga Alignment from Exonerate_protein2genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagAATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga Alignment from Exonerate_coding2genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagAATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga Alignment from GeneWise GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tgtgtctttggagggactctgcccttttgtgcttccttcttgcctcctagAATGCTGAGGAACAATCGTATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGCGGCTCCTGTCGCTCTATGAGAACCACATCACCACCATTTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACTgtaagcctcagtctctgaggacatgcaagctggtgactcggactagggga #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagaCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAatgtaagtttcccacttataggagggtccctagctagatacacatgggatgg Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagaCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAatgtaagtttcccacttataggagggtccctagctagatacacatgggatgg Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagACGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtaagtttcccacttataggagggtccctagctagatacacatgggatgg Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagACGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtaagtttcccacttataggagggtccctagctagatacacatgggatgg Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagACGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtaagtttcccacttataggagggtccctagctagatacacatgggatgg Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagACGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtaagtttcccacttataggagggtccctagctagatacacatgggatgg Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagACGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtaagtttcccacttataggagggtccctagctagatacacatgggatgg Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatttgtatgtgtttgtgctggcctctcttctgtctagACGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtaagtttcccacttataggagggtccctagctagatacacatgggatgg #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from CESAR cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Pairagon CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagaCAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTctgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagaCAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTctgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTCTgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTCTgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTCTgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTCTgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg Alignment from Exonerate_coding2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTCTgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gttcaagcccctgcttgaacaacacttcctgaggctccctgtaaccctagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGGGGATTGGAGGTTCTgtaagaagaatccagggtggccatggttggggagttgatactgttcaagg #### Slit1_ID8251_2 --> 1 - 2 Original Alignment gGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGtt aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctaggGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGttgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt Alignment from CESAR gGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGtt aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctaggGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGttgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt Alignment from Spaln_aa2Genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctagGGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt Alignment from Spaln_nt2Genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctagGGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt Alignment from Pairagon GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctagGGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt Alignment from Exonerate_protein2genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctagGGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt Alignment from Exonerate_coding2genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctagGGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt Alignment from GeneWise GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT aggatcgccaactgcccacaccaatgttaagcaactttgctttcttctagGGAACTCAACGGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtatgcgcagggctctggtcattgactgcttctaccctcagcctagcttt #### Slk_ID10247_3 --> 0 - 1 Original Alignment ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTggtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa Alignment from CESAR ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTggtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa Alignment from Spaln_aa2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTGgtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa Alignment from Spaln_nt2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTGgtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa Alignment from Pairagon ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTGgtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa Alignment from Exonerate_protein2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTGgtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa Alignment from Exonerate_coding2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTGgtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa Alignment from GeneWise ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG caaagtgccaaaagctggtgttcccactcacccctactcaccccacacagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTTGATGCCGTGATGCTTGgtaagtgtctcagttttctctctaccttacttaccatatttgtccccgaa #### Slk_ID10252_8 --> 0 - 0 Original Alignment CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga Alignment from CESAR CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga Alignment from Spaln_aa2Genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga Alignment from Spaln_nt2Genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga Alignment from Pairagon CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga Alignment from Exonerate_protein2genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga Alignment from Exonerate_coding2genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga Alignment from GeneWise CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG agcattttagtttccgtttagcatgcttgctatcgcctatttgcctgcagCATCCCTTTGTTACCATTGATTCCAACAAACCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtatgtatcattgtcagtatcattaggagtgacatggggggatgcacgga #### Slk_ID10259_13 --> 0 - 0 Original Alignment GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAGgcgagtgcagcagctgcaggccgcttcaccagagagcaccctttctcctt Alignment from CESAR GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAGgcgagtgcagcagctgcaggccgcttcaccagagagcaccctttctcctt Alignment from Spaln_aa2Genome GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAGgcgagtgcagcagctgcaggccgcttcaccagagagcaccctttctcctt Alignment from Spaln_nt2Genome GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAGgcgagtgcagcagctgcaggccgcttcaccagagagcaccctttctcctt Alignment from Pairagon GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAGgcgagtgcagcagctgcaggccgcttcaccagagagcaccctttctcctt Alignment from Exonerate_protein2genome GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAGgcgagtgcagcagctgcaggccgcttcaccagagagcaccctttctcctt Alignment from Exonerate_coding2genome GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAGgcgagtgcagcagctgcaggccgcttcaccagagagcaccctttctcctt Alignment from GeneWise GTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACGAAGCGCAGGAAAGAGGAGCTTGCGCAGAGCCAGCACGCTCAGGAACAAG tctgatgacgaagtatcacaccccaccgaactgttcccctcccttcttagGTTATGAATGAAGTGGAGAAAGCCCCCAGAGAGCTGAGGAGGGAGCTCACAAAGCGCAGGAAAGAGGAGCTTGCACAGAGCCAGCACGCTCAG---GCGAgtgcagcagctgcaggccgcttcaccagagagcaccctttctc #### Smarca2_ID5728_10 --> 0 - 2 Original Alignment CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGgggtaagacattgaaattttgttgttgggattcttggagattaggggtgggt Alignment from CESAR CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGgggtaagacattgaaattttgttgttgggattcttggagattaggggtgggt Alignment from Spaln_aa2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGGGgtaagacattgaaattttgttgttgggattcttggagattaggggtgggt Alignment from Spaln_nt2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGGGgtaagacattgaaattttgttgttgggattcttggagattaggggtgggt Alignment from Pairagon CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGGGgtaagacattgaaattttgttgttgggattcttggagattaggggtgggt Alignment from Exonerate_protein2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGGGgtaagacattgaaattttgttgttgggattcttggagattaggggtgggt Alignment from Exonerate_coding2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGGGgtaagacattgaaattttgttgttgggattcttggagattaggggtgggt Alignment from GeneWise CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG cacctagctcagatacactataattatggagtcacccctaccctccttagCCAATAGATGAAAGCGGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAAGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACCTGGTTGGAAATGAATCCGGGgtaagacattgaaattttgttgttgggattcttggagattaggggtgggt #### Smarca2_ID5732_14 --> 0 - 2 Original Alignment CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGtcgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc Alignment from CESAR CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGtcgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc Alignment from Spaln_aa2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc Alignment from Spaln_nt2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc Alignment from Pairagon CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc Alignment from Exonerate_protein2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc Alignment from Exonerate_coding2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc Alignment from GeneWise CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggatcttggataattgccttctcttcctcttcatgaagCTCCAGGGCCTGGAATGGATGGTTTCCTTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaatctgaagcaatgttgttcttagcttcc #### Smarca2_ID5743_20 --> 0 - 0 Original Alignment GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat Alignment from CESAR GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat Alignment from Spaln_aa2Genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat Alignment from Spaln_nt2Genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat Alignment from Pairagon GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat Alignment from Exonerate_protein2genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat Alignment from Exonerate_coding2genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat Alignment from GeneWise GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG ggaaatgtttgaaccactatcaattagtataaacttctctttttcagcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATATGCAACCACCCGTATATGTTTCAGCACATTGAAgtacctctgcagcttgtactttgctgttcagtgtgttaggaaggcagaat #### Smarca2_ID5758_27 --> 0 - 2 Original Alignment GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt Alignment from CESAR GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt Alignment from Spaln_aa2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt Alignment from Spaln_nt2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt Alignment from Pairagon GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt Alignment from Exonerate_protein2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt Alignment from Exonerate_coding2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt Alignment from GeneWise GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tatttgccttacttagccttattctttccctctttgacatttttacacagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactccttcctctccaccaagtcttggagcatttcagatt #### Smarca2_ID5763_30 --> 0 - 1 Original Alignment ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGg gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGggtgagcttcatgcacctggccctactcactcaaggagcagactacacagt Alignment from CESAR ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGg gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGggtgagcttcatgcacctggccctactcactcaaggagcagactacacagt Alignment from Spaln_aa2Genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGGgtgagcttcatgcacctggccctactcactcaaggagcagactacacagt Alignment from Spaln_nt2Genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGGgtgagcttcatgcacctggccctactcactcaaggagcagactacacagt Alignment from Pairagon ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGGgtgagcttcatgcacctggccctactcactcaaggagcagactacacagt Alignment from Exonerate_protein2genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGGgtgagcttcatgcacctggccctactcactcaaggagcagactacacagt Alignment from Exonerate_coding2genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGGgtgagcttcatgcacctggccctactcactcaaggagcagactacacagt Alignment from GeneWise ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG gtttgccacagtcagcatttggattttatgttgtgtcctcacccctacagATCTATGAAGACTCTATTGTCCTACAGTCAGTGTTCAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGACGAAGAGGAGTCAGAGTCAGAGGgtgagcttcatgcacctggccctactcactcaaggagcagactacacagt #### Smc3_ID11319_7 --> 1 - 0 Original Alignment gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcaggAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa Alignment from CESAR gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcaggAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa Alignment from Spaln_aa2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa Alignment from Spaln_nt2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa Alignment from Pairagon GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa Alignment from Exonerate_protein2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa Alignment from Exonerate_coding2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa Alignment from GeneWise GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatgttttaaaactgtttatcctgagtaacatgcttcatctcggcagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgggggttggatatttcttttattttttttttttttatttggggaaa #### Smc3_ID11327_15 --> 1 - 0 Original Alignment tTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagtTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat Alignment from CESAR tTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagtTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat Alignment from Spaln_aa2Genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagTTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat Alignment from Spaln_nt2Genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagTTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat Alignment from Pairagon TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagTTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat Alignment from Exonerate_protein2genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagTTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat Alignment from Exonerate_coding2genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagTTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat Alignment from GeneWise TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG ttggtatgtaactcttaaatactgttccatagtcctttcttgttttacagTTACTTGTGGAGAGAGGAGAACGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCAGCAACAGGAAAGgtgctgaggtcttgtttgatctactaattactataataactacattccat #### Smc3_ID11330_18 --> 0 - 1 Original Alignment GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATT---ACTTTGGAAg aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACA---GAAggtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga Alignment from CESAR GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATTACTTTGGAAg aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACAGAAggtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga Alignment from Spaln_aa2Genome GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATTACTTTGGAAG aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACAGAAGgtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga Alignment from Spaln_nt2Genome GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATTACTTTGGAAG aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACAGAAGgtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga Alignment from Pairagon GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATTACTTTGGAAG aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACAGAAGgtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga Alignment from Exonerate_protein2genome GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATTACTTTGGAAG aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACAGAAGgtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga Alignment from Exonerate_coding2genome GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATTACTTTGGAAG aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACAGAAGgtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga Alignment from GeneWise GATGCTATTCCTATGATCAGTAAGCTGAGGTACAATCCCAGATTTGACAAAGCTTTCAAACATGTATTTGGAAAGACACTCATCTGTCGGAGCATGGAAGTTTCAACTCAGCTGGCCCGGGCCTTCACTATGGACTGTATTACTTTGGAAG aattgactataattgactatgtcacagtccactgctccttctctccccagGATGCTATCCCCATGATCAGCAAGCTGAGGTACAATCCCAGATTTGACAAAACTTTCAAACACGTATTTGGAAAGACACTCATCTGTCAGAGCATGGAAGTTTCAACTCAGTTGGCCCGGGCCTTCACTATGGACTGTATTATTACAGAAGgtaagtaatccatgcaccttttctcacaaatgagaatgtcctgccagaga #### Smc3_ID11332_20 --> 2 - 0 Original Alignment ggATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagggATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga Alignment from CESAR ggATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagggATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga Alignment from Spaln_aa2Genome GGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagGGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga Alignment from Spaln_nt2Genome GGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagGGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga Alignment from Pairagon GGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagGGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga Alignment from Exonerate_protein2genome GGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagGGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga Alignment from Exonerate_coding2genome GGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagGGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga Alignment from GeneWise GGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGCATCCAGAGATAGCATATTATCAGAGATGAAGATGCTAAAAGAGAAGAGACAGCAATCAGAAAAGACCTTCATGCCAAAG gatctagaaatatttaccaccttaggagcttgcttcctcccaccccttagGGATTAATAATGAAATTGACCAGTTGATGAACCAAATGCAGCAGATAGAGACCCAACAAAGAAAATTTAAAGTATCCAGAGATAGTATATTATCAGAAATGAAGATGCTAGAAGAGAAAAGACAGCAATCAGAAAAGACCTTCATGCCAAAGgtaccaaattatgtctcattatagctctgctttaatgtgcactgtgcaga #### Smc3_ID11334_22 --> 0 - 0 Original Alignment GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt Alignment from CESAR GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt Alignment from Spaln_aa2Genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt Alignment from Spaln_nt2Genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt Alignment from Pairagon GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt Alignment from Exonerate_protein2genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt Alignment from Exonerate_coding2genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt Alignment from GeneWise GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG acattataatgctacttaatcttttctaagtgtttctttttctttctcagGAAAACAGGCAACTGCTAAATGAAAGAATTAAACTAGAGGGTATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAATGCTTGGACCAAGTAGAACAGgttcgatgttttccaagatctctatgctagtcataagtgatgggaagtgt #### Smc3_ID11335_23 --> 0 - 1 Original Alignment GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAg tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAggtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag Alignment from CESAR GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAg tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAggtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag Alignment from Spaln_aa2Genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAGgtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag Alignment from Spaln_nt2Genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAGgtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag Alignment from Pairagon GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAGgtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag Alignment from Exonerate_protein2genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAGgtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag Alignment from Exonerate_coding2genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAGgtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag Alignment from GeneWise GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tcaaaacttaaacctggagatttaatccgtatctctcctgtcccttgtagGAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAGGATACTATGGCAAGATCAGAAGgtacaggctaagagtgaatttcttccaggggcctgggaaagatggctcag #### Smc3_ID11336_24 --> 2 - 0 Original Alignment atTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagatTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGT------AGCTGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag Alignment from CESAR atTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagatTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGT------AGCTGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag Alignment from Spaln_aa2Genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagATTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGT------AGCTGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag Alignment from Spaln_nt2Genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagATTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGTA------GCTGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag Alignment from Pairagon ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagATTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGTA------GCTGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag Alignment from Exonerate_protein2genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagATTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGT------AGCTGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag Alignment from Exonerate_coding2genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagATTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGT------AGCTGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag Alignment from GeneWise ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tgattctactcagataagattctgattaaccgattcttttctttccacagATTTGGACAACTCCATTGACAAGACAGAAGCTGGAATTAAAGAGTTCCAAAAAAGTAGC------TGGAAAAATATGGAGAAAGAGCACATGGATGCCATAAATCATGATACGAAAGAGCTGGACAAGATGACCAACCAACAAGGCATGCTTTTAAAAAAGAAGGAGGAGTGTATGAAGAAGATCCAGGAGCTGGGGTCCCTCCCCCAGGAGGCATTTGAGGAGTACCAGACACTGAGCCTGAAGGAGgtctgtgtacatgcacttacattttatagaaacccacttgctgtggccag #### Smc5_ID5108_23 --> 0 - 0 Original Alignment GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggaccctttttgtttttttaaatgaagG Alignment from CESAR GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggacccccaccacctttcttccatcagG Alignment from Spaln_aa2Genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggaccctttttgtttttttaaatgaagG Alignment from Spaln_nt2Genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggaccctttttgtttttttaaatgaagG Alignment from Pairagon GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggaccctttttgtttttttaaatgaagG Alignment from Exonerate_protein2genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggaccctttttgtttttttaaatgaagG Alignment from Exonerate_coding2genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggaccctttttgtttttttaaatgaagG Alignment from GeneWise GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G caaactactaattatcaatcattagtttattcttatttttctactttcagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTAATGGCACTCCAGGAGCTTAACAGATGTCTGTTCAGAGTAGTTGATGAAATTAATCAGgtgagttgactccattgggggtggaccctttttgtttttttaaatgaagG #### Smc5_ID5109_22 --> 0 - 0 Original Alignment GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca Alignment from CESAR GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca Alignment from Spaln_aa2Genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca Alignment from Spaln_nt2Genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca Alignment from Pairagon GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca Alignment from Exonerate_protein2genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca Alignment from Exonerate_coding2genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca Alignment from GeneWise GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagaggatagtattgtttcagagtcattgctgtcttacatttccctttagGTGAAAGAAAGGTGGCTGAATCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagtgtgtttgtgatgcagtatattaccaacaactttaattatgtgca #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tatattttatcctttgataaatttttccctcctgtgtcttcctctcacagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAAATACAGCAATTGACTGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTACAGgtaagttatactctgattcgtttgccatgaatgggatgagcatacaaatt #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG ataacagtactcacttcatctttcgtgagctgtcttgttcacccccgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagtcatcatatcttcagtatccatcccacagttatcatactgctgtc #### Smc5_ID5114_19 --> 0 - 0 Original Alignment CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct Alignment from CESAR CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct Alignment from Spaln_aa2Genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct Alignment from Spaln_nt2Genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct Alignment from Pairagon CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct Alignment from Exonerate_protein2genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct Alignment from Exonerate_coding2genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct Alignment from GeneWise CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG cttgctctcgttgaggccctacataatcttccttttaaacgtgtcctcagCAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCGATGgtaagcagtactcattcttcaattgaaatctctattctctagcagctgct #### Smc5_ID5119_14 --> 0 - 0 Original Alignment GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact Alignment from CESAR GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact Alignment from Spaln_aa2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact Alignment from Spaln_nt2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact Alignment from Pairagon GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact Alignment from Exonerate_protein2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact Alignment from Exonerate_coding2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact Alignment from GeneWise GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatattagacctcttattagttatttatttggttttgtttgggtttgcagGTAATACAAGAAACGCGATTGAAACAAATTTATACAGCAGAAGAAAAATATGTGTTAAAAACTTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGAAGACACTTGGAAGAACAGCTAAAGgtaacctcactagattgggttactaaaatgtcaaccggagttttaagact #### Smc5_ID5121_12 --> 0 - 2 Original Alignment GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAaa ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAaagtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct Alignment from CESAR GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAaa ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAaagtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct Alignment from Spaln_aa2Genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAAAgtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct Alignment from Spaln_nt2Genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAAAgtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct Alignment from Pairagon GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAAAgtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct Alignment from Exonerate_protein2genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAAAgtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct Alignment from Exonerate_coding2genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAAAgtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct Alignment from GeneWise GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA ttgtttcaggtaaacacacaataataaacgctgaccgctactcgctgcagGTTCGTGACAACGAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCATCAAGATCTCTGAATGACTTAAAgtaagttctaatttcaatgttaagtgatattaagtggctttgagctctct #### Smc5_ID5124_9 --> 0 - 1 Original Alignment ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGagtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt Alignment from CESAR ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGagtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt Alignment from Spaln_aa2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGAgtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt Alignment from Spaln_nt2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGAgtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt Alignment from Pairagon ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGAgtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt Alignment from Exonerate_protein2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGAgtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt Alignment from Exonerate_coding2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGAgtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt Alignment from GeneWise ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacttgaaggaaactgtccaggatgttttttttttttgtatatatagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGTGAGAACCTTCAGCCTCAGATTGACACCGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGGAgtaagtttgaggggtgcaaagaatcgtttatagatggaaacttggttatt #### Smc5_ID5125_8 --> 0 - 0 Original Alignment TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct Alignment from CESAR TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct Alignment from Spaln_aa2Genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct Alignment from Spaln_nt2Genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct Alignment from Pairagon TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct Alignment from Exonerate_protein2genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct Alignment from Exonerate_coding2genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct Alignment from GeneWise TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ctgccatgagtttttaaattaacctttttttttttcccccctaatcttagTCCACTGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACCTGATTGAACGGAAGGACAGGCAAgtgagtgtttgtcccaaaaactgcttaccttagtttacaatagtttgtct #### Smc5_ID5129_5 --> 0 - 0 Original Alignment GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTCAAT---TTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc Alignment from CESAR GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc Alignment from Spaln_aa2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc Alignment from Spaln_nt2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc Alignment from Pairagon GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc Alignment from Exonerate_protein2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc Alignment from Exonerate_coding2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc Alignment from GeneWise GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtaattgataatacttgctaaatgctgttttttgttgtttagGACAAAGTTGGGGAATTTGCTAAACTTAGCAAAATCGAACTCCTTGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTAGAGgtaaggagaaacagcaatcatctcagtatcctttaattctaagtacttcc #### Smc5_ID5131_3 --> 0 - 2 Original Alignment GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAAct ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAAttgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt Alignment from CESAR GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAAct ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAAttgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt Alignment from Spaln_aa2Genome GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAACT ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAATTgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt Alignment from Spaln_nt2Genome GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAACT ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAATTgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt Alignment from Pairagon GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAACT ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAATTgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt Alignment from Exonerate_protein2genome GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAACT ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAATTgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt Alignment from Exonerate_coding2genome GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAACT ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAATTgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt Alignment from GeneWise GTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAACT ggtaactggaaaaccgttgacatagctccattactgtgttcccactatagGTTGGGTTTTTTGTGAAGAGAGGGTGTTCGAAAGGATTGGTTGTCATTGAATTgtaagtgttaaacactccttttatgaatctcctgctagtccatatgcttt #### Smndc1_ID11279_3 --> 1 - 2 Original Alignment gTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAaa tggggtacaagagctatacgcacctgccccagctttactgtcttcttcaggTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAaagtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg Alignment from CESAR gTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAaa tggggtacaagagctatacgcacctgccccagctttactgtcttcttcaggTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAaagtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg Alignment from Spaln_aa2Genome GTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAA tggggtacaagagctatacgcacctgccccagctttactgtcttcttcagGTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAAgtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg Alignment from Spaln_nt2Genome GTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAA tggggtacaagagctatacgcacctgccccagctttactgtcttcttcagGTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAAgtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg Alignment from Pairagon GTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAA tggggtacaagagctatacgcacctgccccagctttactgtcttcttcagGTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAAgtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg Alignment from Exonerate_protein2genome GTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAA tggggtacaagagctatacgcacctgccccagctttactgtcttcttcagGTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAAgtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg Alignment from Exonerate_coding2genome GTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAA tggggtacaagagctatacgcacctgccccagctttactgtcttcttcagGTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAAgtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg Alignment from GeneWise GTGTTACGAAGCGGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCTGTTTATGGCAATGCCGAAGTGACGCCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAA tggggtacaagagctatacgcacctgccccagctttactgtcttcttcagGTGTTATGAAGCAGAGATTGAAGAGATAGATGAAGAAAATGGCACCGCTGCAATCACCTTTGCGGTTTATGGCAATGCCGAAGTGACACCATTGCTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCGAAAGAGGACAGCGGCAACAAACCCATGTCAAAgtaaaaagtgcttgccagatgtgcacatgttggaaggaaaaggccagctg #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagggCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagggCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaccacagcaacacagacactgatgctcctgtttctgttccttctaagGGCGGTTTGAAGCCTCTGTGATTGAGGAGCGTCGCAAGGGTGCAGATGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatgtgtgctaacaaggctccccctcaatcagatccatctgcctc #### Sorbs1_ID7901_21 --> 0 - 0 Original Alignment CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt Alignment from CESAR CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt Alignment from Spaln_aa2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt Alignment from Spaln_nt2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt Alignment from Pairagon CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt Alignment from Exonerate_protein2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt Alignment from Exonerate_coding2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt Alignment from GeneWise CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctttctcttctctgctttcttttactactgttctccattcttacacagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTGGAAATGTCTTTCCGAAAGgtatgccacccacctcatcgtgagaacactcctatcccacggagaagtgt #### Sorbs1_ID7903_19 --> 0 - 2 Original Alignment ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGaagtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt Alignment from CESAR ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGaagtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt Alignment from Spaln_aa2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGAAgtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt Alignment from Spaln_nt2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGAAgtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt Alignment from Pairagon ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGAAgtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt Alignment from Exonerate_protein2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGAAgtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt Alignment from Exonerate_coding2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGAAgtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt Alignment from GeneWise ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA cattgtttgacacccatgagttttaactgctgtatcttcttttaatgtagATGAGACCTGCTCGAGCCAAATTTGATTCTAAAGCCCAGACCCTGAAgtatgggcccagacatgcttatctccttaggcacctcttcagaaagctgt #### Sorbs1_ID7922_7 --> 2 - 0 Original Alignment atCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagatCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt Alignment from CESAR atCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagatCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt Alignment from Spaln_aa2Genome ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt Alignment from Spaln_nt2Genome ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt Alignment from Pairagon ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt Alignment from Exonerate_protein2genome ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt Alignment from Exonerate_coding2genome ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt Alignment from GeneWise ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG agagaaattttgccttggagtttcagcttaaacttaattttgtaatttagATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGAGCCAGTACCAACCCCAGCAGAGCTTACTTCACCTGGCAGGGCTTCTGAGAGAAGGGCAGAGGATGCTAGCAGGCGGGTAGTGAGAAGCACACAAGACCTGAGCGATGTGTCTACAGATGAAGTTGGCATCCCACTCCGGgtaagtataatgtggacttttgtatcttcagcaagggtgctgcctgtgtt #### Sorbs1_ID7931_4 --> 2 - 1 Original Alignment gcCTGGAGCCAGAGGACCCTTCAGCAg cctcttagttgccatcctcttagtgccacactcctgcttctcccccacaggcCTGGAGCCTGAGGACCCTTCAGCAggtaactctattcttgcattcttatcccctgtgccttggggcaccagggat Alignment from CESAR gcCTGGAGCCAGAGGACCCTTCAGCAg cctcttagttgccatcctcttagtgccacactcctgcttctcccccacaggcCTGGAGCCTGAGGACCCTTCAGCAggtaactctattcttgcattcttatcccctgtgccttggggcaccagggat Alignment from Spaln_aa2Genome GCCTGGAGCCAGAGGACCCTTCAGCAG cctcttagttgccatcctcttagtgccacactcctgcttctcccccacagGCCTGGAGCCTGAGGACCCTTCAGCAGgtaactctattcttgcattcttatcccctgtgccttggggcaccagggat Alignment from Spaln_nt2Genome GCCTGGAGCCAGAGGACCCTTCAGCAG cctcttagttgccatcctcttagtgccacactcctgcttctcccccacagGCCTGGAGCCTGAGGACCCTTCAGCAGgtaactctattcttgcattcttatcccctgtgccttggggcaccagggat Alignment from Pairagon GCCTGGAGCCAGAGGACCCTTCAGCAG cctcttagttgccatcctcttagtgccacactcctgcttctcccccacagGCCTGGAGCCTGAGGACCCTTCAGCAGgtaactctattcttgcattcttatcccctgtgccttggggcaccagggat Alignment from Exonerate_protein2genome GCCTGGAGCCAGAGGACCCTTCAGCAG cctcttagttgccatcctcttagtgccacactcctgcttctcccccacagGCCTGGAGCCTGAGGACCCTTCAGCAGgtaactctattcttgcattcttatcccctgtgccttggggcaccagggat Alignment from Exonerate_coding2genome GCCTGGAGCCAGAGGACCCTTCAGCAG cctcttagttgccatcctcttagtgccacactcctgcttctcccccacagGCCTGGAGCCTGAGGACCCTTCAGCAGgtaactctattcttgcattcttatcccctgtgccttggggcaccagggat Alignment from GeneWise cctcttagttgccatcctcttagtgccacactcctgcttctcccccacaggcctggagcctgaggacccttcagcaggtaactctattcttgcattcttatcccctgtgccttggggcaccagggat #### Sorcs3_ID10523_2 --> 0 - 2 Original Alignment GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGag gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGaggtaatcggatttgaccatctgagacctgcctccactgttccctccactgc Alignment from CESAR GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGag gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGaggtaatcggatttgaccatctgagacctgcctccactgttccctccactgc Alignment from Spaln_aa2Genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtaatcggatttgaccatctgagacctgcctccactgttccctccactgc Alignment from Spaln_nt2Genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtaatcggatttgaccatctgagacctgcctccactgttccctccactgc Alignment from Pairagon GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtaatcggatttgaccatctgagacctgcctccactgttccctccactgc Alignment from Exonerate_protein2genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtaatcggatttgaccatctgagacctgcctccactgttccctccactgc Alignment from Exonerate_coding2genome GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtaatcggatttgaccatctgagacctgcctccactgttccctccactgc Alignment from GeneWise GTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAG gctctcccttcccttgttccaccttcttttctccacccgtaccccatcagGTCATACTGATCCTGACGAAGCTCTATGACTTCAACCTTGGGAGTGTCACTGAGAGTTCTCTGTGGAGgtaatcggatttgaccatctgagacctgcctccactgttccctccactgc #### Sorcs3_ID10557_4 --> 0 - 0 Original Alignment ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt Alignment from CESAR ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt Alignment from Spaln_aa2Genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt Alignment from Spaln_nt2Genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt Alignment from Pairagon ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt Alignment from Exonerate_protein2genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt Alignment from Exonerate_coding2genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt Alignment from GeneWise ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactccctcaatttgaatcgtgctcagacctttctacctgtcagATCATGCTCCTGAGTGATCCTGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCAACCTACCAAAAGTACCGGCTTACATTTTACATCCAGAGCCTTCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTGGACCAAAAGgtaagtaaacactgtgtttacagggagttactctggggcaaaaaaattgt #### Sorcs3_ID10588_6 --> 1 - 1 Original Alignment gTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAt tctcctgtgcctgcccttacacagccttctacccacccctttctccgcaggTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGAtgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct Alignment from CESAR gTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAt tctcctgtgcctgcccttacacagccttctacccacccctttctccgcaggTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGAtgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct Alignment from Spaln_aa2Genome GTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAT tctcctgtgcctgcccttacacagccttctacccacccctttctccgcagGTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGATgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct Alignment from Spaln_nt2Genome GTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAT tctcctgtgcctgcccttacacagccttctacccacccctttctccgcagGTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGATgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct Alignment from Pairagon GTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAT tctcctgtgcctgcccttacacagccttctacccacccctttctccgcagGTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGATgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct Alignment from Exonerate_protein2genome GTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAT tctcctgtgcctgcccttacacagccttctacccacccctttctccgcagGTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGATgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct Alignment from Exonerate_coding2genome GTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAT tctcctgtgcctgcccttacacagccttctacccacccctttctccgcagGTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGATgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct Alignment from GeneWise GTCGGTGTCTGGACTGGATAAGGAGGCAGACCTGGTGCACATGGAAGTGAGGACGGCAGATGGAT tctcctgtgcctgcccttacacagccttctacccacccctttctccgcagGTCAGTGTCTGGACTTGATAAGGAGGCAGATCTGGTGCACATGGAAGTGAGGACAGCAGATGGATgtatccgctcaagggatcacactatgcccagtgaccagcctgaagtctct #### Sorcs3_ID10622_16 --> 0 - 2 Original Alignment GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAAtg gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAAtggtaactcctttgaaattcccccttgagtcattaccagacccttaatcact Alignment from CESAR GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAAtg gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAAtggtaactcctttgaaattcccccttgagtcattaccagacccttaatcact Alignment from Spaln_aa2Genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaactcctttgaaattcccccttgagtcattaccagacccttaatcact Alignment from Spaln_nt2Genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaactcctttgaaattcccccttgagtcattaccagacccttaatcact Alignment from Pairagon GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaactcctttgaaattcccccttgagtcattaccagacccttaatcact Alignment from Exonerate_protein2genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaactcctttgaaattcccccttgagtcattaccagacccttaatcact Alignment from Exonerate_coding2genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaactcctttgaaattcccccttgagtcattaccagacccttaatcact Alignment from GeneWise GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgttttagtccctgtcttgctccccgtttctcataatcccgaatttcagGGAGAGCCTTGTGTCATGGGGGAAAGAAAAATATTCAAGAAACGCAAGCCAGGCACTCAGTGTGCCCTTGGCAGAGAGTACTCGGGGTTGGTGGTGTCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaactcctttgaaattcccccttgagtcattaccagacccttaatcact #### Sorcs3_ID10636_24 --> 0 - 1 Original Alignment ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAg cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAggtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt Alignment from CESAR ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAg cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAggtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt Alignment from Spaln_aa2Genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAGgtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt Alignment from Spaln_nt2Genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAGgtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt Alignment from Pairagon ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAGgtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt Alignment from Exonerate_protein2genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAGgtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt Alignment from Exonerate_coding2genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAGgtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt Alignment from GeneWise ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG cactatcactaaccacacttatctaggattttgtttacttttgtctgtagATTGTAGAGACACGATTTAATTCACTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTACTGATTTTTGTCACACAGCTGACATTAGgtaagtgcttcccaggagccaggggaaacgagatggatatgccattgttt #### Sorcs3_ID10638_26 --> 1 - 1 Original Alignment gAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAg atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaaggAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAggtaagtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg Alignment from CESAR gAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAg atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaaggAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAggtaagtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg Alignment from Spaln_aa2Genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaagGAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGgtaagtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg Alignment from Spaln_nt2Genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaagGAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGgtaagtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg Alignment from Pairagon GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaagGAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGgtaagtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg Alignment from Exonerate_protein2genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaagGAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGgtaagtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg Alignment from Exonerate_coding2genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaagGAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGgtaagtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg Alignment from GeneWise GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGGAAG atctagcatgcttttttgtctcatgctgtttttatctgattctgtacaagGAAAATCCCATGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACATGACATGATTGAATCAGTGAGCCAAAGTGAGAACGCACCCAAAATCACACTCAGTGACTTCACTGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAGGTAAgtgtgtgctatcatgtggtgttgcccagtactcagtcatttcctgg #### Sptbn2_ID608_3 --> 0 - 0 Original Alignment CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca Alignment from CESAR CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca Alignment from Spaln_aa2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca Alignment from Spaln_nt2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca Alignment from Pairagon CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca Alignment from Exonerate_protein2genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca Alignment from Exonerate_coding2genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca Alignment from GeneWise CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG aaagataatgtggtctcgtgcacacctcacgtaactctgtccctgaacagCCGAAACCTACCAAGGGCCGAATGCAGATTCACTGCCTGGAAAATGTAGATAGAGCACTGCAGTTCCTGAAGGAGCAGAAAGTGCACTTGCAAAACATGGGCTCACATGATATTGTGGATGGAAACCACCATCTGACTCTTGGGCTAGTGTGGACCATCGTCCTCCGATTCCAGgtgagttctgagtgttatctggggcataaactgtatacgaacccaggcca #### Sptbn2_ID613_8 --> 0 - 2 Original Alignment GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCaa gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAaagtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa Alignment from CESAR GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCaa gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAaagtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa Alignment from Spaln_aa2Genome GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAAAgtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa Alignment from Spaln_nt2Genome GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAAAgtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa Alignment from Pairagon GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAAAgtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa Alignment from Exonerate_protein2genome GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAAAgtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa Alignment from Exonerate_coding2genome GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAAAgtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa Alignment from GeneWise GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA gtctgtctccttaaattggaccaggaagttgatgtatgactatttttcagGTCCTAGACCATGCCATGGAGGCAGAACATCTGGTAGAGAAATATGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACAATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGTTGCAGTCCTTCAACTCCTATCGCACTGTGGAGAAGCCACCAAAgtatgtgtccctggggccccaccctgccagaaggtgcctgcccagagaaa #### Sptbn2_ID623_18 --> 0 - 0 Original Alignment CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt Alignment from CESAR CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt Alignment from Spaln_aa2Genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt Alignment from Spaln_nt2Genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt Alignment from Pairagon CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt Alignment from Exonerate_protein2genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt Alignment from Exonerate_coding2genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt Alignment from GeneWise CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG tttccctctaaaggacctcctccttcagcatatttgaatgtgttttacagCTGAGACTCTGGATTGATGATAAGATGCTGTCAGCTCAGGATGTGTCCTATGATGAAGCACGAAACCTGCACACCAAGTGGCAGAAACACCAGGCTTTCATGGCTGAGCTTGCAGCTAACAGGGACTGGCTGGGCAAAGTGGACAAGgtaagcagtgtggacagacccatccaatgctcaagcctttggtggtgctt #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatctggatcccttctctgtctttcttctgcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatctggatcccttctctgtctttcttctgcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatctggatcccttctctgtctttcttctgcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatctggatcccttctctgtctttcttctgcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatctggatcccttctctgtctttcttctgcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatctggatcccttctctgtctttcttctgcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatctggatcccttctctgtctttcttctgcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa Alignment from GeneWise -----------------------------------------------CAGCCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT CCTTTCAACTCAGCCAGCATCTGGATCCCTTCTCTGTCTTTCTTCTGCAGCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagtctagctaatggcctaggtatgggtgtcaagagatgagggcgcaa #### Ssh3_ID454_2 --> 0 - 2 Original Alignment CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCag catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCaggtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat Alignment from CESAR CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCag catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCaggtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat Alignment from Spaln_aa2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat Alignment from Spaln_nt2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat Alignment from Pairagon CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat Alignment from Exonerate_protein2genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat Alignment from Exonerate_coding2genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat Alignment from GeneWise CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAG catttcctgtccttcaggctgtgctcttttgtttgcttctgtcttcctagCAGGACCGTGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGgtaagttctgtctgacaaatgcatccttattgtgtgtgaactgatgccat #### Stambpl1_ID6894_2 --> 0 - 2 Original Alignment AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAac acacacacattcacaagcttataacctgttccttctccctttgtacctagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAacgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta Alignment from CESAR AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAac acacacacattcacaagcttataacctgttccttctccctttgtacctagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAacgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta Alignment from Spaln_aa2Genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC acacacacattcacaagcttataacctgttccttctccctttgtacctagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta Alignment from Spaln_nt2Genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC acacacacattcacaagcttataacctgttccttctccctttgtacctagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta Alignment from Pairagon AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC acacacacattcacaagcttataacctgttccttctccctttgtacctagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta Alignment from Exonerate_protein2genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC acacacacattcacaagcttataacctgttccttctccctttgtacctagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta Alignment from Exonerate_coding2genome TTCACTGTGAATTCACTGAAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC acacacacattcacaagcttataacctgttccTTCTCCCTTTGTACCTAGAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta Alignment from GeneWise AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC acacacacattcacaagcttataacctgttccttctccctttgtacctagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACCCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtacctctttgaactgaaaatttgtttcctctactgttataagaattgta #### Stambpl1_ID6901_8 --> 0 - 2 Original Alignment ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGgagtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg Alignment from CESAR ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGgagtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg Alignment from Spaln_aa2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGGAgtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg Alignment from Spaln_nt2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGGAgtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg Alignment from Pairagon ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGGAgtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg Alignment from Exonerate_protein2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGGAgtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg Alignment from Exonerate_coding2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGGAgtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg Alignment from GeneWise ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctggccgttcctagtaaaaaaacccaccctctctgactcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTCCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAATGCTATAGTGTGTTCCCCAAAGCATAGGGAgtaagtgggacaagaaagctctcccatattccaatccgcaacaatctctg #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagcACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagcACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Pairagon CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from GeneWise CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg #### Stip1_ID1996_5 --> 1 - 0 Original Alignment gAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcaggAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc Alignment from CESAR gAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcaggAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc Alignment from Spaln_aa2Genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcagGAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc Alignment from Spaln_nt2Genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcagGAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc Alignment from Pairagon GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcagGAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc Alignment from Exonerate_protein2genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcagGAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc Alignment from Exonerate_coding2genome GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcagGAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc Alignment from GeneWise GAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTTGATCTGGGCAGCATGGATGAAGAGGAAGAGGCAGCAACACCCCCACCCCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTTCCAGAGAATAAGAAACAG cctaaactgtagagccatttctttagccctgaaatgagtttttttttcagGAAACTACAGGATCCCCGGGTGATGACTACTCTGAGTGTCCTCCTTGGGGTCGATCTGGGCAGCATGGACGAAGAGGAAGAGGCAGCAACACCACCACCCCCACCTCCTCTGAAAAAGGAGCCCAAGCCAGAACCAATGGAAGAAGATCTGCCAGAGAATAAAAAGCAGgtaaccttctcagctaaactgtcacacatttgcagattgccagtgattgc #### Stip1_ID1998_3 --> 0 - 1 Original Alignment GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAg atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAggtaagtattcatttggcattccctttttttaggattcatttgtgggtttc Alignment from CESAR GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAg atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAggtaagtattcatttggcattccctttttttaggattcatttgtgggtttc Alignment from Spaln_aa2Genome GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAG atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAGgtaagtattcatttggcattccctttttttaggattcatttgtgggtttc Alignment from Spaln_nt2Genome GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAG atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAGgtaagtattcatttggcattccctttttttaggattcatttgtgggtttc Alignment from Pairagon GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAG atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAGgtaagtattcatttggcattccctttttttaggattcatttgtgggtttc Alignment from Exonerate_protein2genome GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAG atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAGgtaagtattcatttggcattccctttttttaggattcatttgtgggtttc Alignment from Exonerate_coding2genome GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAG atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAGgtaagtattcatttggcattccctttttttaggattcatttgtgggtttc Alignment from GeneWise GGTTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAAGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAGGTTGGCAG atttacttctatgtgatttctagttatattccactttttctcttctacagGGCTATTCAAGAAAAGCAGCAGCCCTTGAATTCCTAAACCGGTTTGAGGAAGCCAAACGAACCTATGAAGAGGGTTTAAAACATGAAGCCAATAATCTCCAGCTTAAGGAGGGCTTGCAGAACATGGAGGCCAAGTTGGCAGgtaagtattcatttggcattccctttttttaggattcatttgtgggtttc #### Stx3_ID3296_9 --> 0 - 0 Original Alignment GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac Alignment from CESAR GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac Alignment from Spaln_aa2Genome GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac Alignment from Spaln_nt2Genome GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac Alignment from Pairagon GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac Alignment from Exonerate_protein2genome GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac Alignment from Exonerate_coding2genome GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac Alignment from GeneWise GGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGGTCAGGCTCGGAAG gtgtgtgtgagtatgttcattaacaggtctgtctggttatttctctacagGGGGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGCACCATGCGGAGAAGGCACGGGATGAAACTAAAAGAGCAATGAAGTACCAGGGTCAGGCTCGGAAGgtatgcattttcttctgcctacagacaaggcgctaccttttgtttgctac #### Stx3_ID3300_6 --> 0 - 1 Original Alignment CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTagtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt Alignment from CESAR CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTagtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt Alignment from Spaln_aa2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTAgtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt Alignment from Spaln_nt2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTAgtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt Alignment from Pairagon CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTAgtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt Alignment from Exonerate_protein2genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTAgtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt Alignment from Exonerate_coding2genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTAgtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt Alignment from GeneWise CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggtcatctctgggggactacttaactacgtccccccccctcctattgcagCACTCTGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGAGAACGCAGCAAAGGGCGCATCCAACGTCAACTTGAAATTAgtagaagatagaaattggtccatgttggccctcacctcttcctgctatgt #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCaggtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCaggtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG agagtaactagcaacagtgactaaattaggcttctcaccttgtttttaagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCCAGgtgagatggaggggtgttggaatgggctgatagtgttttgagtgtatcct #### Sufu_ID9887_2 --> 1 - 2 Original Alignment gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga gcttctttctgataagtttatgttgacatgacactgtgatctggggacaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt Alignment from CESAR gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga gcttctttctgataagtttatgttgacatgacactgtgatctggggacaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt Alignment from Spaln_aa2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA gcttctttctgataagtttatgttgacatgacactgtgatctggggacagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt Alignment from Spaln_nt2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA gcttctttctgataagtttatgttgacatgacactgtgatctggggacagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt Alignment from Pairagon GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA gcttctttctgataagtttatgttgacatgacactgtgatctggggacagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt Alignment from Exonerate_protein2genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA gcttctttctgataagtttatgttgacatgacactgtgatctggggacagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt Alignment from Exonerate_coding2genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA gcttctttctgataagtttatgttgacatgacactgtgatctggggacagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt Alignment from GeneWise GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA gcttctttctgataagtttatgttgacatgacactgtgatctggggacagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaagtgtctgccatctgcttttctgagtgtcagccatctgcttttcctt #### Sufu_ID9898_6 --> 1 - 0 Original Alignment tGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagtGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac Alignment from CESAR tGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagtGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac Alignment from Spaln_aa2Genome TGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagTGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac Alignment from Spaln_nt2Genome TGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagTGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac Alignment from Pairagon TGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagTGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac Alignment from Exonerate_protein2genome TGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagTGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac Alignment from Exonerate_coding2genome TGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagTGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac Alignment from GeneWise TGCTGGCGGTCCCTGGCTGATAACTGACATGCGGCGGGGAGAAACCATATTTGAGATCGATCCGCACCTGCAA ctgctgatcaatgcaggtccccagttactgcctcctcctttcttttttagTGCTGGTGGTCCCTGGCTGATAACTGACATGTGGCGGGGAGAAACAATATTTGAGATCGATCCACACTTACAAgtgaggctcaagtgaggacaaccttgctagcacaatcttacaaatatcac #### Syt7_ID2805_2 --> 2 - 0 Original Alignment ggGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG gggtccagcatttaaagtggctatgctctgaaacacctgtcctctcgcagggGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc Alignment from CESAR ggGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG gggtccagcatttaaagtggctatgctctgaaacacctgtcctctcgcagggGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc Alignment from Spaln_aa2Genome GGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG gggtccagcatttaaagtggctatgctctgaaacacctgtcctctcgcagGGGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc Alignment from Spaln_nt2Genome GGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG gggtccagcatttaaagtggctatgctctgaaacacctgtcctctcgcagGGGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc Alignment from Pairagon GGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG gggtccagcatttaaagtggctatgctctgaaacacctgtcctctcgcagGGGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc Alignment from Exonerate_protein2genome GGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG gggtccagcatttaaagtggctatgctctgaaacacctgtcctctcgcagGGGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc Alignment from Exonerate_coding2genome GGGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG gggtccagcatttaaagtggctatgctctgaaacacctgtcctctcgcaGGGGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc Alignment from GeneWise TACCGGGACCCGGAGGCGGCCAGCCCAGGGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCATCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTG ggctatgctctgaaacacctgt---------CCTCTCGCA---------GGGGCACCTACCCGTGATGTCCTGCTGGTGTCTGCAATCATCACTGTCAGCCTTAGCATCACTATTGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGgtgagttccctcccctgaggcttgccctgatactccatcagccatattgc #### Syt7_ID2828_9 --> 0 - 1 Original Alignment GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAg gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAggtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg Alignment from CESAR GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAg gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAggtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg Alignment from Spaln_aa2Genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAGgtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg Alignment from Spaln_nt2Genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAGgtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg Alignment from Pairagon GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAGgtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg Alignment from Exonerate_protein2genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAGgtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg Alignment from Exonerate_coding2genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAGgtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg Alignment from GeneWise GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggctcaggcttggcttgtggtgacatccacagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAGgtgagcagctcaccacactagggtggacacacctgtgaaggagtttcctg #### Syt7_ID2829_10 --> 2 - 0 Original Alignment acCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagacCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag Alignment from CESAR acCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagacCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag Alignment from Spaln_aa2Genome ACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag Alignment from Spaln_nt2Genome ACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag Alignment from Pairagon ACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag Alignment from Exonerate_protein2genome ACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag Alignment from Exonerate_coding2genome ACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag Alignment from GeneWise ACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAG caacagacacactctgatgctccagccctaaccacaccatgttttggtagACCCCTATGTGAAGGTGTGGCTGATGTATAAAGACAAGCGTGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCTGAACCCAATCCTCAATGAGTCTTTTGCATTCGACATACCCACAGAGAAGCTGAGGGAGACCACGATCATCATCACTGTCATGGACAAGGACAAGCTCAGCAGCAATGACGTCATTGGCAAGgtaaatctcagccagaggtgcacagcaggccatgaatggtttgccctgag #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaagtggaaagtaacctcaaattgtctctctcttaaccctccagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgagttaaaggcagggttcaggggagggtgcccaaatgcatttttcatg #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcaggCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcaggCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggttgggcctgacagccttgtcctttgcagGCCCCCAAGGCCAGCTACCTCAGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCGCCTTCCAGTAGCGCTCCGAGCTCCGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaaggagcaaaacaataggcccagaatatctaggggtgggatgaaggg #### Taf5_ID10098_6 --> 0 - 1 Original Alignment GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAggtgactgagttgacgtatgatataaactggaaattagtatacatcggttt Alignment from CESAR GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAggtgactgagttgacgtatgatataaactggaaattagtatacatcggttt Alignment from Spaln_aa2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAGgtgactgagttgacgtatgatataaactggaaattagtatacatcggttt Alignment from Spaln_nt2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAGgtgactgagttgacgtatgatataaactggaaattagtatacatcggttt Alignment from Pairagon GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAGgtgactgagttgacgtatgatataaactggaaattagtatacatcggttt Alignment from Exonerate_protein2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAGgtgactgagttgacgtatgatataaactggaaattagtatacatcggttt Alignment from Exonerate_coding2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAGgtgactgagttgacgtatgatataaactggaaattagtatacatcggttt Alignment from GeneWise GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG tggattttcttccctactacgttatccaccttaatttactgtcctcccagGGCCTTACTGCAGTGGACGTCACTGATGACTCTAGCCTGATTGCTGGGGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTGAAAAGCTTCGTAGTGTCAAACAAGCATCAGgtgactgagttgacgtatgatataaactggaaattagtatacatcggttt #### Tbc1d12_ID7681_4 --> 1 - 1 Original Alignment gAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAg aggtggttccaaattgagagctttaatttgtattcccccattgccaccaggAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAggtaagatgaattagtggactattaatttgtaaactttaactctttcattt Alignment from CESAR gAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAg aggtggttccaaattgagagctttaatttgtattcccccattgccaccaggAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAggtaagatgaattagtggactattaatttgtaaactttaactctttcattt Alignment from Spaln_aa2Genome GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAG aggtggttccaaattgagagctttaatttgtattcccccattgccaccagGAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAGgtaagatgaattagtggactattaatttgtaaactttaactctttcattt Alignment from Spaln_nt2Genome GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAG aggtggttccaaattgagagctttaatttgtattcccccattgccaccagGAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAGgtaagatgaattagtggactattaatttgtaaactttaactctttcattt Alignment from Pairagon GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAG aggtggttccaaattgagagctttaatttgtattcccccattgccaccagGAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAGgtaagatgaattagtggactattaatttgtaaactttaactctttcattt Alignment from Exonerate_protein2genome GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAG aggtggttccaaattgagagctttaatttgtattcccccattgccaccagGAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAGgtaagatgaattagtggactattaatttgtaaactttaactctttcattt Alignment from Exonerate_coding2genome GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAG aggtggttccaaattgagagctttaatttgtattcccccattgccaccagGAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAGgtaagatgaattagtggactattaatttgtaaactttaactctttcattt Alignment from GeneWise GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAG aggtggttccaaattgagagctttaatttgtattcccccattgccaccagGAATCTTCCTGCGAAATCTGTGGAGGAAGTGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAGgtaagatgaattagtggactattaatttgtaaactttaactctttcattt #### Tbc1d12_ID7685_8 --> 2 - 0 Original Alignment gtCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctaggtCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa Alignment from CESAR gtCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctaggtCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa Alignment from Spaln_aa2Genome GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctagGTCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa Alignment from Spaln_nt2Genome GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctagGTCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa Alignment from Pairagon GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctagGTCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa Alignment from Exonerate_protein2genome GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctagGTCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa Alignment from Exonerate_coding2genome GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctagGTCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa Alignment from GeneWise GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG tcaggagagtagaggcaagtacatgggatcaccttatctttcccttctagGTCTGTCTGTTGCTGACCGAGAGGCCAGTCTGGAATTGATTAAGTTAGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGgtgagtttttccaatcagtttttaactcccatttattcttttggcactaa #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctc Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctt Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctc Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctc Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctc Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctc Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctc Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcagggtccattgtgtccctaagtgttcaacccatctaacaagtaccagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGATGTCTGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagttaagggttgtgtgtatgggcagtctttgtgggcctagggtgctc #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from CESAR GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Spaln_aa2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Spaln_nt2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Pairagon GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Exonerate_protein2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Exonerate_coding2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from GeneWise GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtgaagttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtggtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from CESAR CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtaagattacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtggtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Spaln_aa2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgaagttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Spaln_nt2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgaagttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Pairagon CCAGTGAC-----------------------------------------GGGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAGTGAAGTTACATGGAAGACATGTCTCATTTTCTTCTCTAAGGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Exonerate_protein2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgaagttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from Exonerate_coding2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgaagttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt Alignment from GeneWise CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgaagttacatggaagacatgtctcattttcttctctaagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtatgaaatgaatgcctcgttgctcagtcacaagatgtgtccagtcaatt #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTagtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTagtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt #### Tctn3_ID7989_12 --> 1 - 0 Original Alignment aCCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagaCCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag Alignment from CESAR aCCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagaCCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag Alignment from Spaln_aa2Genome ACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag Alignment from Spaln_nt2Genome ACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag Alignment from Pairagon ACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag Alignment from Exonerate_protein2genome ACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag Alignment from Exonerate_coding2genome ACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag Alignment from GeneWise ACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTCTGCACGGAAGGCCCAGACCGGAGCACGTTGCCGTCTTTGGCAACGCTGACCCAGCCCAGAGAGGAGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCA tggcattgcacccatactggtgttgggcctgtcacctgtcccttgtgcagACCCAGAGAGGTGAACTGCAGCCACTTGCAGGAGGAGGTTTATCAGACTTTACATGGAAGGCCCAGACCAGAGCCTGTTGCTGTCTTTGGCAATGCTGACCCAGCCCAGAGGGGGGGGTGGACCAGGATCCTCAGCAGAGACTGCAGCGTTTCAgtaagtaagcaggccagcactgcttggtggcttgctttccccctttgcag #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAaggtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAaggtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgcctctagtcactgtggaaacctcatctatcccccagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAGTACAGTTTGGTGTGAATGCAGTATCTGGATGCCAATTAAGgtgagtatttgcctcagaccacctcctgccagtttgtttctgttcctagg #### Tdrd1_ID12209_10 --> 2 - 1 Original Alignment gaAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACa tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacaggaAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACagtacggacacaggctcccattgacacaggctcccattgactcttgtcagg Alignment from CESAR gaAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACa tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacaggaAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACagtacggacacaggctcccattgacacaggctcccattgactcttgtcagg Alignment from Spaln_aa2Genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacagGAAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACAgtacggacacaggctcccattgacacaggctcccattgactcttgtcagg Alignment from Spaln_nt2Genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacagGAAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACAgtacggacacaggctcccattgacacaggctcccattgactcttgtcagg Alignment from Pairagon GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacagGAAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACAgtacggacacaggctcccattgacacaggctcccattgactcttgtcagg Alignment from Exonerate_protein2genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacagGAAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACAgtacggacacaggctcccattgacacaggctcccattgactcttgtcagg Alignment from Exonerate_coding2genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacagGAAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACAgtacggacacaggctcccattgacacaggctcccattgactcttgtcagg Alignment from GeneWise GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgaagtaatgtctcagtagaaatatggcattttttttcttaaacagGAAAGCAGCTAGACCATGTGCTGGTGGAGATGGGGTATGGAGTGAAACCTGGAGAGCAGAGTTCCACAGAACAGAGTGTGGACCACAgtacggacacaggctcccattgacacaggctcccattgactcttgtcagg #### Tdrd1_ID12213_14 --> 2 - 1 Original Alignment gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcaggtGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTggtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg Alignment from CESAR gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcaggtGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTggtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg Alignment from Spaln_aa2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcagGTGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTGgtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg Alignment from Spaln_nt2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcagGTGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTGG---TGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTGgtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg Alignment from Pairagon GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcagGTGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTGG---TGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTGgtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg Alignment from Exonerate_protein2genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcagGTGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTGgtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg Alignment from Exonerate_coding2genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcagGTGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTGgtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg Alignment from GeneWise GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG cccagtggtggcacagacttgttgacacaagcctctgtctactgtttcagGTGTGAAGCCATCCTTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTGCTGGGAACCAGGGCCCTGGTGGAGCTCATCGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCGGGCTTTACCATCAAAGAGAAGGACGTGGCAGACAAAGGTAGCAGTATGCACACAGCCAGTGgtgagtgtgatctgagtccaagagtgtgtgcatggaccagaccttagggg #### Tdrd1_ID12216_17 --> 2 - 1 Original Alignment gtGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAg tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacaggtGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAggtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct Alignment from CESAR gtGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAg tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacaggtGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAggtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct Alignment from Spaln_aa2Genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacagGTGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAGgtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct Alignment from Spaln_nt2Genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacagGTGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAGgtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct Alignment from Pairagon GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacagGTGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAGgtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct Alignment from Exonerate_protein2genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacagGTGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAGgtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct Alignment from Exonerate_coding2genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacagGTGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAGgtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct Alignment from GeneWise GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG tgaatgtgaaggcgatgggagagactcatttgtttttgtttctttaacagGTGATGGCAACTGGTACCAGGCTCTAGTTAAGGAGATCCTGCCAAGTGGGAATGTGAGAGTCCACTTTGTGGATTATGGAAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAGgtgagagtcaataggcttttctcacatcttggtgggctaacactgtagct #### Tectb_ID11558_2 --> 2 - 0 Original Alignment atGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagatGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat Alignment from CESAR atGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagatGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat Alignment from Spaln_aa2Genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat Alignment from Spaln_nt2Genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat Alignment from Pairagon ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat Alignment from Exonerate_protein2genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat Alignment from Exonerate_coding2genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat Alignment from GeneWise ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG actcatctctgcatcaagcagacctaatctgtctctcccattttcttcagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCCGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagcctatgatcccagctgctgctgagatgctcaagcagaaaggagat #### Tjp2_ID5267_19 --> 0 - 0 Original Alignment ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg Alignment from CESAR ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg Alignment from Spaln_aa2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg Alignment from Spaln_nt2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg Alignment from Pairagon ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg Alignment from Exonerate_protein2genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg Alignment from Exonerate_coding2genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg Alignment from GeneWise ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG ctctccacttccaagagcccccactcactctcccttcctcccaccaacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTGACCGCCATGGGCGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCGGCAGAGGAGCCGCTCGTGTCTTCCATCACCCGCTCCTCGGAGCCAGTGCAACACGAGGAGgtatggttaggtacagtgtggaaagtatccccaaaggattggagcccagg #### Tjp2_ID5270_17 --> 0 - 1 Original Alignment GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAggtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct Alignment from CESAR GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAggtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct Alignment from Spaln_aa2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct Alignment from Spaln_nt2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct Alignment from Pairagon GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct Alignment from Exonerate_protein2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct Alignment from Exonerate_coding2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct Alignment from GeneWise GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG agatgcctgactttgatgtcaccatgcacatgtctccttactcgttgtagGACAAGCATGCCCTGCTTGACGTTACCCCCAAAGCGGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCGGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCTAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAGgtaggtgaactttgaaaaagacccgtgcccagaatgagcaattagaagct #### Tjp2_ID5271_16 --> 2 - 0 Original Alignment aaACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagaaACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg Alignment from CESAR aaACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagaaACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg Alignment from Spaln_aa2Genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagAAACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg Alignment from Spaln_nt2Genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagAAACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg Alignment from Pairagon AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagAAACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg Alignment from Exonerate_protein2genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagAAACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg Alignment from Exonerate_coding2genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagAAACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg Alignment from GeneWise AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG tgatccacctgccttctagtgaattacttctttgcctccctatgctctagAAACAGAACCCAAAGATGCCGGTTCTAAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTAAGGCAAATTATTGAGCAGgtgagtaagcgctccacaagctcatgttgtcaactactggaccgtggttg #### Tjp2_ID5282_5 --> 0 - 1 Original Alignment GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGCAAAGCAAATGAAg tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGACAGT---ATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGggtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc Alignment from CESAR GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTTGTG------TCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAA------AGCAAAGCAAATGAAg tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGACAGT---ATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGggtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc Alignment from Spaln_aa2Genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGCAAAGCAAATGAAG tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGAC---AGTATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGGgtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc Alignment from Spaln_nt2Genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTT------TGTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAA------GCAAAGCAAATGAAG tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGACAG---TATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGGgtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc Alignment from Pairagon GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTT------TGTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAA------AGCAAAGCAAATGAAG tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGACAG---TATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGGgtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc Alignment from Exonerate_protein2genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGCAAAGCAAATGAAG tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGAC---AGTATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGGgtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc Alignment from Exonerate_coding2genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGCAAAGCAAATGAAG tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGAC---AGTATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGGgtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc Alignment from GeneWise GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTTGTG------TCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAA------AGCAAAGCAAATGAAG tgcccttccaggtgcatctctgttgcccatatctgttgttgttgttttagGTGGTGAAGAGACCCCGGAAGGTTCAGGTGGCCCCGCTGCAAGGCAGCCCCCCTCTCAGTCATGATGACCGAGGTTTTGAAGTGATTGAAGAGTTTGATGGCAGAAGTTTCCACAGTGGCTATAGTGAGAGGAGTCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAGCGCACACAGAGCCGGGAGCGTGAGCGTAGCCGCGGTAGGAGCCTGGAACAGGGCTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCACGACTTTGTGTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGACAGGGACTACGACCGGGATTATGAGCGCTCCTATCACGAAGCTTTTGAACCTGATTATGGAGGTGGCTACAGCCCATCATATGACCGAAGAGCCCATCCAGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACGTTCCCGAAGCCCAAGCCCCGAGTCTAGGTCACAGCATGAATACAAGGGCCAACATGATCCCGACAGT---ATTGGGGTTCTTCTAACCAAAACCAAGAGCAAGGCAAATGAGGgtaggtacatatgatgttaggatacaagctacaactgctgcagcagcgtc #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagcgTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagcgTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat #### Tle4_ID3654_8 --> 2 - 0 Original Alignment acAGAGACTCCATCAAG cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagacAGAGACTCCATCAAGgcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat Alignment from CESAR acAGAGACTCCATCAAG cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagacAGAGACTCCATCAAGgcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat Alignment from Spaln_aa2Genome ACAGAGACTCCATCAAG cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagACAGAGACTCCATCAAGgcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat Alignment from Spaln_nt2Genome ACAGAGACTCCATCAAG cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagACAGAGACTCCATCAAGgcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat Alignment from Pairagon ACAGAGACTCCATCAAG cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagACAGAGACTCCATCAAGgcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat Alignment from Exonerate_protein2genome ACAGAGACTCCATCAAG cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagACAGAGACTCCATCAAGgcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat Alignment from Exonerate_coding2genome cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagacagagactccatcaaggcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat Alignment from GeneWise cttttttttcttatgtcaatttgagtgcaaaattttattctaatttttagacagagactccatcaaggcaagtttcaaaaacattcagacacatagtgtagagggattatgagtaat #### Tle4_ID3691_2 --> 0 - 2 Original Alignment GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACag ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACaggtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt Alignment from CESAR GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACag ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACaggtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt Alignment from Spaln_aa2Genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACAGgtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt Alignment from Spaln_nt2Genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACAGgtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt Alignment from Pairagon GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACAGgtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt Alignment from Exonerate_protein2genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACAGgtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt Alignment from Exonerate_coding2genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACAGgtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt Alignment from GeneWise GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG ccccccacctgtgatgtgggctaattgacctcctgtttcctggcctctagGCGCCGCATCAGCCTGCTCAACCATTCAAATTTACAATTTCAGAATCCTGTGATCAGATTAAGGAAGAGTTCCAGTTTTTACAGGCTCAATACCACAGgtcagcgttgtgagtgtagctgacccttctgattgcttagttctggtatt #### Tll2_ID8099_20 --> 2 - 0 Original Alignment agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagagTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg Alignment from CESAR agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagagTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg Alignment from Spaln_aa2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagAGTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg Alignment from Spaln_nt2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagAGTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg Alignment from Pairagon AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagAGTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg Alignment from Exonerate_protein2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagAGTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg Alignment from Exonerate_coding2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagAGTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg Alignment from GeneWise AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttgggtgccagggcagagcatgagcctttttgttttccattttctagAGTGTGGAGGCAGGCTGAAGGCTGAAGTGCAGACCAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGATGGTTATGGTGTTGAGTTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTATGACTTCATGGAGGCTTACGATGGGTATGACAGCTCAGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGGgtaagcctgtaggatgttctggccaccttaggatgcaattagacttgagg #### Tll2_ID8103_16 --> 0 - 1 Original Alignment GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAg gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAA------GGTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAggtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag Alignment from CESAR GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAg gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAA------GGTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAggtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag Alignment from Spaln_aa2Genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAA------GGTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag Alignment from Spaln_nt2Genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAAG------GTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag Alignment from Pairagon GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAAG------GTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag Alignment from Exonerate_protein2genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAA------GGTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag Alignment from Exonerate_coding2genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAA------GGTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag Alignment from GeneWise GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG gaaggagtaattgaggggtacatattgcttttctttttaatgatttttagGTCTGTAAGTATGACTTTGTAGAA------GGTGGCCTTTCCCCAGATGCCAAGCTTCATGGCAAATTCTGTGGCTCAGAGACCCCAGAGGTTATCACATCACAGAGCAACAATATGAGAGTGGAATTCAAGTCTGACAACACTGTCTCCGAGCGAGGCTTCAGGGCTCACTTCTTCTCAGgtagggggggtcggcctgcagcaactttttgtgctgggctatggtaaaag #### Tll2_ID8107_13 --> 0 - 1 Original Alignment ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGggtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt Alignment from CESAR ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGggtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt Alignment from Spaln_aa2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt Alignment from Spaln_nt2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt Alignment from Pairagon ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt Alignment from Exonerate_protein2genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt Alignment from Exonerate_coding2genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt Alignment from GeneWise ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG tgaagccaagcctgccagtgtccccgatgatgacagctgtcatttcacagAGTGAAAGGCATGACAGTTGTGCATATGACTATCTGGAGATCCGAGATGGTCCCACAGAAGACAGCACCCTGATTGGCCACTTCTGTGGCTATGAGAAGCCGGAGGCTGTGAAATCCAGTGCTAACCGACTGTGGGTGAAGTTTGTGTCTGACGGCTCCATCAACAAAGCGGGCTTTGCAGCCAATTTCTTCAAGGgtcaggaccagccctttcatgtgcttattcaatggaagcactattgcttt #### Tll2_ID8111_10 --> 0 - 1 Original Alignment ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGggtaggaagacataagccctctaagaattggggattaaagtgtgttccacc Alignment from CESAR ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGggtaggaagacataagccctctaagaattggggattaaagtgtgttccacc Alignment from Spaln_aa2Genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtaggaagacataagccctctaagaattggggattaaagtgtgttccacc Alignment from Spaln_nt2Genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtaggaagacataagccctctaagaattggggattaaagtgtgttccacc Alignment from Pairagon ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtaggaagacataagccctctaagaattggggattaaagtgtgttccacc Alignment from Exonerate_protein2genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtaggaagacataagccctctaagaattggggattaaagtgtgttccacc Alignment from Exonerate_coding2genome ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtaggaagacataagccctctaagaattggggattaaagtgtgttccacc Alignment from GeneWise ATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG tagtcttcagggcttgttgttgaaaccttccttttgtatgtcttatgtagATCATCCTAAATTTCACCTCCATGGATTTGTTTAAGAGCCGCCTGTGCTGGTATGATTACGTGGAGATACGGGATGGTTACTGGAGAAAGGCTCCCCTGTTGGgtaggaagacataagccctctaagaattggggattaaagtgtgttccacc #### Tll2_ID8121_5 --> 2 - 2 Original Alignment gtACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTgg gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccaggtACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTgggtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt Alignment from CESAR gtACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTgg gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccaggtACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTgggtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt Alignment from Spaln_aa2Genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccagGTACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTGGgtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt Alignment from Spaln_nt2Genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccagGTACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTGGgtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt Alignment from Pairagon GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccagGTACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTGGgtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt Alignment from Exonerate_protein2genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccagGTACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTGGgtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt Alignment from Exonerate_coding2genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccagGTACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTGGgtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt Alignment from GeneWise GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG gcataaagaaggtgagtccagaagtgactgttgaccctttgtcattccagGTACCCAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTTGTAGAGAGGACACATGAACAAAGCTTCACTGTATTCAGTTACAGGACCTGTGGgtaagtagggagtaagactgtttcagcatggtatgagggaattggtgggt #### Tlx1_ID9330_2 --> 2 - 2 Original Alignment gtCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGag gtctcccactctagaggccctttcacccggctgaccatctctgttggcaggtCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGC---ACCTTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGaggtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc Alignment from CESAR gtCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGag gtctcccactctagaggccctttcacccggctgaccatctctgttggcaggtCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGCACC---TTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGaggtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc Alignment from Spaln_aa2Genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctttcacccggctgaccatctctgttggcagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGCACC---TTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGAGgtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc Alignment from Spaln_nt2Genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctttcacccggctgaccatctctgttggcagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGCA---CCTTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGAGgtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc Alignment from Pairagon GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctttcacccggctgaccatctctgttggcagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGCA---CCTTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGAGgtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc Alignment from Exonerate_protein2genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctttcacccggctgaccatctctgttggcagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGCACC---TTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGAGgtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc Alignment from Exonerate_coding2genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctttcacccggctgaccatctctgttggcagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGCACC---TTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGAGgtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc Alignment from GeneWise GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctcccactctagaggccctttcacccggctgaccatctctgttggcagGTCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAGAAGCCACGCACC---TTCACGTGCTCACAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCAGCGGAGCGCGCCGCTCTCACCAAGGCACTCAAGATGACTGATGCGCAAGTAAAAACCTGGTTCCAAAACCGAAGGACGAAGTGGAGgtaagttcatgaggcggatccagggctgaggagggggcttcccctctgtc #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATggtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATggtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from GeneWise GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc #### Tm9sf3_ID8136_14 --> 1 - 1 Original Alignment gATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTg caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcaggATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTggtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa Alignment from CESAR gATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTg caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcaggATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTggtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa Alignment from Spaln_aa2Genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa Alignment from Spaln_nt2Genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa Alignment from Pairagon GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa Alignment from Exonerate_protein2genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa Alignment from Exonerate_coding2genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa Alignment from GeneWise GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG caaacttaaagaacaatctgtgtgtggaactctttccacgttggtttcagGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGAATAATGTGTGgtgagtaaatgcacccagtgtgtctttctgtgttgtttaaacttcaagaa #### Tm9sf3_ID8137_13 --> 1 - 2 Original Alignment gCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCaa aactcttctttctcataccaaacgatattttttctcattcttacgctcaggCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCaagtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg Alignment from CESAR gCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCaa aactcttctttctcataccaaacgatattttttctcattcttacgctcaggCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCaagtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg Alignment from Spaln_aa2Genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA aactcttctttctcataccaaacgatattttttctcattcttacgctcagGCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg Alignment from Spaln_nt2Genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA aactcttctttctcataccaaacgatattttttctcattcttacgctcagGCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg Alignment from Pairagon GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA aactcttctttctcataccaaacgatattttttctcattcttacgctcagGCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg Alignment from Exonerate_protein2genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA aactcttctttctcataccaaacgatattttttctcattcttacgctcagGCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg Alignment from Exonerate_coding2genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA aactcttctttctcataccaaacgatattttttctcattcttacgctcagGCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg Alignment from GeneWise GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA aactcttctttctcataccaaacgatattttttctcattcttacgctcagGCAGTGGACAAGTTTCCTGTCTGCGGCATCAACCGCTATCTACGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtatgtatgaaatgaaagaagaaatagagatgttctatgaaaccaacatg #### Tm9sf3_ID8143_7 --> 0 - 2 Original Alignment GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAga ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAgagtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt Alignment from CESAR GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAga ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAgagtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt Alignment from Spaln_aa2Genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt Alignment from Spaln_nt2Genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt Alignment from Pairagon GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt Alignment from Exonerate_protein2genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt Alignment from Exonerate_coding2genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt Alignment from GeneWise GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA ctgattttgtctatgagtgctaacattccggtgcacacggtgtctggcagGACAGAGACCTAGGAGACAAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTTAGACCATCAAGTCACCCTCTGATCTTCTCGTCACTAATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAAGACTTATATACAGAgtaagtgttgggactgtatcatctactggttgggtatgaatagtttcttt #### Tm9sf3_ID8147_3 --> 2 - 1 Original Alignment atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagatGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGggtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc Alignment from CESAR atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagatGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGggtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc Alignment from Spaln_aa2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagATGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc Alignment from Spaln_nt2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagATGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc Alignment from Pairagon ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagATGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc Alignment from Exonerate_protein2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagATGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc Alignment from Exonerate_coding2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagATGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc Alignment from GeneWise ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG tcgttatgtattgaaaatgcataggttaacagcatccctctcccctccagATGATGTGATGCCAGGCACTTACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGgtaagatgactgttccagatcatgatgagaatgtgtttctcatatttgcc #### Tmc1_ID4830_13 --> 0 - 0 Original Alignment ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTT---TTTCATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt Alignment from CESAR ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt Alignment from Spaln_aa2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt Alignment from Spaln_nt2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTT---TCATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt Alignment from Pairagon ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTT---TTCATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt Alignment from Exonerate_protein2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt Alignment from Exonerate_coding2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt Alignment from GeneWise ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG aaatggtgatctgttattgccatttccaccttcttcttgactttccgcagATTGAAGATGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTCCCTCGTGGTCCTTGCTGGGAAATAATGGTGGGGCAGgtaagtgtacaaagagaagtacctgtccttggtgtaatgtgctgcatgtt #### Tmc1_ID4832_11 --> 0 - 0 Original Alignment GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct Alignment from CESAR GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct Alignment from Spaln_aa2Genome GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct Alignment from Spaln_nt2Genome GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct Alignment from Pairagon GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct Alignment from Exonerate_protein2genome GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct Alignment from Exonerate_coding2genome GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct Alignment from GeneWise GAAGCCATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTCTGAGGTTTCTCGCTAACTTCTTCGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAGGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAA atcctccccatagccctctctctctcccagattcactctgccatttgcagGAGGCTATCATAGAAGAGAGAGCCGCACAGGTGGAGGAGAACATCCACCTCATCAGATTTTTGAGGTTTCTCACTAACTTCTTTGTGTTCCTCACACTTGGTGCAAGTGGATACCTCATCTTTTGGGCTGTGAAGCGATCCCAAGAGTTCGCCCAGCAAGATCCTGACACCCTTGGGTGGTGGGAAAAAAATGAAgtacgtctctgcatgcgtttgctatgcaaacaactgcaactcacggatct #### Tmc1_ID4840_5 --> 1 - 0 Original Alignment gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcaggGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga Alignment from CESAR gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcaggGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga Alignment from Spaln_aa2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga Alignment from Spaln_nt2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga Alignment from Pairagon GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga Alignment from Exonerate_protein2genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga Alignment from Exonerate_coding2genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga Alignment from GeneWise GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG tacttgtgtgtctacacctgtcaagccccttagcatatattggtttgcagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtaagagttttcatcactcaatctggggggaacactgttcctgtttcaga #### Tmem2_ID4943_5 --> 2 - 1 Original Alignment gaATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAg ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagggATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAggtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc Alignment from CESAR gaATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAg ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagggATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAggtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc Alignment from Spaln_aa2Genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagGGATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAGgtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc Alignment from Spaln_nt2Genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagGGATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAGgtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc Alignment from Pairagon GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagGGATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAGgtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc Alignment from Exonerate_protein2genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagGGATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAGgtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc Alignment from Exonerate_coding2genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagGGATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAGgtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc Alignment from GeneWise GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG ctttatgtatgaatacccacatgttcatcatattgtgttattgcttccagGGATCTCCCTCTCTGGCTTTCGGGTGGACATTGCAGATGGAGTAAAGCTTCACCTGTTGGATGACATCAGCACCTGGGAAGCTGGAGACCAAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTGCATTGCCCCAAGTGCAGCTGTTCTCAGGTCAAAGTCAAAGgtaagagactcctcacttgaccttgggaaagcaccctgagattccatggc #### Tmem2_ID4947_9 --> 1 - 0 Original Alignment gGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccaggGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt Alignment from CESAR gGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccaggGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt Alignment from Spaln_aa2Genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccagGGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt Alignment from Spaln_nt2Genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccagGGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt Alignment from Pairagon GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccagGGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt Alignment from Exonerate_protein2genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccagGGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt Alignment from Exonerate_coding2genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccagGGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt Alignment from GeneWise GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG caggggttctttaaagaatgtgttaagtctctgctcctcccgttccccagGGCTGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATGCAGCTGCAGGCTCACAGgtaaggccaccatgttttcattctcctcacacttgtgagagctgtggctt #### Tmem2_ID4952_13 --> 1 - 2 Original Alignment aTTTGCAGATAACGGAAAGGGGCTGACCTTTGCCag cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagaTTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCaggtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat Alignment from CESAR aTTTGCAGATAACGGAAAGGGGCTGACCTTTGCCag cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagaTTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCaggtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat Alignment from Spaln_aa2Genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagATTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCAGgtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat Alignment from Spaln_nt2Genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagATTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCAGgtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat Alignment from Pairagon ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagATTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCAGgtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat Alignment from Exonerate_protein2genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagATTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCAGgtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat Alignment from Exonerate_coding2genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagATTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCAGgtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat Alignment from GeneWise ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cctacgattcttgctcatttagacacatctgattctgtcccttcctgcagATTTGCAGATAACGGAAAGGGGCTGGCCTTTGCCAGgtaatgaactggcttaattcaactattgtaaacctttagggtaaaaccat #### Tmem2_ID4954_15 --> 1 - 0 Original Alignment gACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacaggACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc Alignment from CESAR gACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacaggACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc Alignment from Spaln_aa2Genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacagGACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc Alignment from Spaln_nt2Genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacagGACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc Alignment from Pairagon GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacagGACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc Alignment from Exonerate_protein2genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacagGACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc Alignment from Exonerate_coding2genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacagGACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc Alignment from GeneWise GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG actaaaggaacaggcctgcatttattaatttattgtgccttcttcaacagGACATTCCCAATCCGAGGCTTTGAGATTTATGATGGGCCTATTCATCTCACAAAAAGTACTTTTAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGTTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAATGTTTCCCTTGTGAAGTTTGGTCCACAAgtcagcatggttatagctccttgacagagaatgggcaaggaaaggcagtc #### Tmem2_ID4963_20 --> 0 - 0 Original Alignment ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag Alignment from CESAR ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag Alignment from Spaln_aa2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag Alignment from Spaln_nt2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag Alignment from Pairagon ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag Alignment from Exonerate_protein2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag Alignment from Exonerate_coding2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag Alignment from GeneWise ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC tgtgggcatagatacaattgccttcaaatttctttttttccccatcccagATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGTTTTCATTCACCTGGGAAAGCAGAAATTCAGCGAGGCGATCCATCCATTATTTCCgtgagtagagtcttctggcgcatcctcagtctttcgggggtggccgtaag #### Tmem2_ID4965_22 --> 1 - 1 Original Alignment gTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAg catccatgctgaccttcccttgagatgatttgtattgttttctgttttaggTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAggtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac Alignment from CESAR gTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAg catccatgctgaccttcccttgagatgatttgtattgttttctgttttaggTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAggtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac Alignment from Spaln_aa2Genome GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG catccatgctgaccttcccttgagatgatttgtattgttttctgttttagGTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAGgtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac Alignment from Spaln_nt2Genome GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG catccatgctgaccttcccttgagatgatttgtattgttttctgttttagGTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAGgtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac Alignment from Pairagon GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG catccatgctgaccttcccttgagatgatttgtattgttttctgttttagGTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAGgtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac Alignment from Exonerate_protein2genome GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG catccatgctgaccttcccttgagatgatttgtattgttttctgttttagGTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAGgtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac Alignment from Exonerate_coding2genome GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG catccatgctgaccttcccttgagatgatttgtattgttttctgttttagGTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAGgtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac Alignment from GeneWise GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG catccatgctgaccttcccttgagatgatttgtattgttttctgttttagGTCTATTGTTTTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCAGATTCATTAGCAGTTCTGGGATTGGCAAAGCCAACACATCTGTATAGTAAAGgtgggcattggcaatatgttggagtgcctatgatactgcagtgcatgtac #### Tnks2_ID7184_5 --> 1 - 0 Original Alignment gAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaaggAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa Alignment from CESAR gAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaaggAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa Alignment from Spaln_aa2Genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaagGAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa Alignment from Spaln_nt2Genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaagGAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa Alignment from Pairagon GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaagGAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa Alignment from Exonerate_protein2genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaagGAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa Alignment from Exonerate_coding2genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaagGAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa Alignment from GeneWise GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG cacagtatgtagtataaattataaataacaatgattcttcttctcccaagGAGTGGCAATGAAGAAAAGATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAGgtaagtctttcatcactgatttcatatcatctggcaatggggatgtgtaa #### Tnks2_ID7187_8 --> 0 - 1 Original Alignment CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGt cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCAtgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta Alignment from CESAR CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGt cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCAtgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta Alignment from Spaln_aa2Genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCATgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta Alignment from Spaln_nt2Genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCATgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta Alignment from Pairagon CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCATgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta Alignment from Exonerate_protein2genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCATgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta Alignment from Exonerate_coding2genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCATgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta Alignment from GeneWise CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatattgttaaaaagaacgaacagtttttttttttaacttgttatagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCGGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACAGCACAGCTGAAGGAAAGATTATCATgtaggcgggaaagtgacacacaagatatgcacagcagtgtgtgtgttcta #### Tnks2_ID7193_14 --> 0 - 2 Original Alignment AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAgg attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAgggtgggtaagcgatctgccttgcttctatcacaccttgataggcccatctt Alignment from CESAR AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAgg attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAgggtgggtaagcgatctgccttgcttctatcacaccttgataggcccatctt Alignment from Spaln_aa2Genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGA------G attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGGTGGGTAAgcgatctgccttgcttctatcacaccttgataggcccatctt Alignment from Spaln_nt2Genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGgtgggtaagcgatctgccttgcttctatcacaccttgataggcccatctt Alignment from Pairagon AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGgtgggtaagcgatctgccttgcttctatcacaccttgataggcccatctt Alignment from Exonerate_protein2genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGgtgggtaagcgatctgccttgcttctatcacaccttgataggcccatctt Alignment from Exonerate_coding2genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGgtgggtaagcgatctgccttgcttctatcacaccttgataggcccatctt Alignment from GeneWise AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG attgtgttaaaaggttaggaatgaatgtctgctccccccactctccccagAAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCAACCCCACTCCACTTTACAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGgtgggtaagcgatctgccttgcttctatcacaccttgataggcccatctt #### Tnks2_ID7194_15 --> 1 - 0 Original Alignment aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagaGGACTTGTACCTTTACACAATGCATGCTCTTATGGACACTATGAAGTTGCAGAACTTCTCGTCAAGCATGGAGCAGTAGTCAATGTGGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTTCAAgtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt Alignment from CESAR aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagaGGACTTGTACCTTTACACAATGCATGCTCTTATGGACACTATGAAGTTGCAGAACTTCTCGTCAAGCATGGAGCAGTAGTCAATGTGGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTTCAAgtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt Alignment from Spaln_aa2Genome tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagaggacttgtacctttacacaatgcatgctcttatggacactatgaagttgcagaacttctcgtcaagcatggagcagtagtcaatgtggctgacttgtggaaattcacacctttacatgaagctgcagcaaaaggaaaatatgaaatatgcaaacttctacttcaagtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt Alignment from Spaln_nt2Genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagAGGACTTGTACCTTTACACAATGCATGCTCTTATGGACACTATGAAGTTGCAGAACTTCTCGTCAAGCATGGAGCAGTAGTCAATGTGGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTTCAAgtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt Alignment from Pairagon AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagAGGACTTGTACCTTTACACAATGCATGCTCTTATGGACACTATGAAGTTGCAGAACTTCTCGTCAAGCATGGAGCAGTAGTCAATGTGGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTTCAAgtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt Alignment from Exonerate_protein2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagAGGACTTGTACCTTTACACAATGCATGCTCTTATGGACACTATGAAGTTGCAGAACTTCTCGTCAAGCATGGAGCAGTAGTCAATGTGGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTTCAAgtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt Alignment from Exonerate_coding2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagAGGACTTGTACCTTTACACAATGCATGCTCTTATGGACACTATGAAGTTGCAGAACTTCTCGTCAAGCATGGAGCAGTAGTCAATGTGGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTTCAAgtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt Alignment from GeneWise AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG tggtcagtcagtatgattactgagattaatctatgaacccttgctttcagAGGACTTGTACCTTTACACAATGCATGCTCTTATGGACACTATGAAGTTGCAGAACTTCTCGTCAAGCATGGAGCAGTAGTCAATGTGGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTTCAAgtgagtttaagtactcactatggatagtgcagttgcctaaagtgcccagt #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc #### Trpm3_ID5035_2 --> 0 - 2 Original Alignment GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag atctaaaatttatattcatcttttcttctgtgcccctccttgccttgcagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATaggtgagttttatagaattttggtatcagaattgaatattagacagcaagaa Alignment from CESAR GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag atctaaaatttatattcatcttttcttctgtgcccctccttgccttgcagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATaggtgagttttatagaattttggtatcagaattgaatattagacagcaagaa Alignment from Spaln_aa2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG atctaaaatttatattcatcttttcttctgtgcccctccttgccttgcagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGgtgagttttatagaattttggtatcagaattgaatattagacagcaagaa Alignment from Spaln_nt2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG atctaaaatttatattcatcttttcttctgtgcccctccttgccttgcagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGgtgagttttatagaattttggtatcagaattgaatattagacagcaagaa Alignment from Pairagon GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG atctaaaatttatattcatcttttcttctgtgcccctccttgccttgcagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGgtgagttttatagaattttggtatcagaattgaatattagacagcaagaa Alignment from Exonerate_protein2genome TCGGGACTGCCGGCACAGCAGACACCGGCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG atctaaaatttatattcatctttTCTTCTGTGCCCCTCCTTGCCTTGCAGGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGgtgagttttatagaattttggtatcagaattgaatattagacagcaagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG atctaaaatttatattcatcttttcttctgtgcccctccttgccttgcagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGgtgagttttatagaattttggtatcagaattgaatattagacagcaagaa #### Trpm3_ID5039_5 --> 2 - 0 Original Alignment gtGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT acacagactaacacagtttatcccccccgaaagttattttcgtcttgcaggtGTCATCCATCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATTGCCCCCTGGGGAATTGTGGAAAACCAGGAAGATCTGATTGGAAGAGATgtgattcctggggggtgcttgattgtctgacttctcctagcatgtgcaat Alignment from CESAR gtGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT acacagactaacacagtttatcccccccgaaagttattttcgtcttgcaggtGTCATCCATCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATTGCCCCCTGGGGAATTGTGGAAAACCAGGAAGATCTGATTGGAAGAGATgtgattcctggggggtgcttgattgtctgacttctcctagcatgtgcaat Alignment from Spaln_aa2Genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT acacagactaacacagtttatcccccccgaaagttattttcgtcttgcagGTGTCATCCATCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATTGCCCCCTGGGGAATTGTGGAAAACCAGGAAGATCTGATTGGAAGAGATgtgattcctggggggtgcttgattgtctgacttctcctagcatgtgcaat Alignment from Spaln_nt2Genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT acacagactaacacagtttatcccccccgaaagttattttcgtcttgcagGTGTCATCCATCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATTGCCCCCTGGGGAATTGTGGAAAACCAGGAAGATCTGATTGGAAGAGATgtgattcctggggggtgcttgattgtctgacttctcctagcatgtgcaat Alignment from Pairagon GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT acacagactaacacagtttatcccccccgaaagttattttcgtcttgcagGTGTCATCCATCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATTGCCCCCTGGGGAATTGTGGAAAACCAGGAAGATCTGATTGGAAGAGATgtgattcctggggggtgcttgattgtctgacttctcctagcatgtgcaat Alignment from Exonerate_protein2genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT acacagactaacacagtttatcccccccgaaagttattttcgtcttgcagGTGTCATCCATCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATTGCCCCCTGGGGAATTGTGGAAAACCAGGAAGATCTGATTGGAAGAGATgtgattcctggggggtgcttgattgtctgacttctcctagcatgtgcaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT acacagactaacacagtttatcccccccgaaagttattttcgtcttgcagGTGTCATCCATCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATTGCCCCCTGGGGAATTGTGGAAAACCAGGAAGATCTGATTGGAAGAGATgtgattcctggggggtgcttgattgtctgacttctcctagcatgtgcaat #### Trpm3_ID5061_17 --> 0 - 0 Original Alignment GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA tctcagtcctctgaatgtgattattaatggctgctcccattcccggctagGTAATTCTGGGAATTTTAGTTCCTCCTTCAATTCTTAGTTTGGAGTTCAAGAACAAAGATGACATGCCATATATGACCCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAAGACATGGAGCTAACAgtgagtaagcatctatgcagttttcttccctggggagaaaacttttgtta Alignment from CESAR GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA tctcagtcctctgaatgtgattattaatggctgctcccattcccggctagGTAATTCTGGGAATTTTAGTTCCTCCTTCAATTCTTAGTTTGGAGTTCAAGAACAAAGATGACATGCCATATATGACCCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAAGACATGGAGCTAACAgtgagtaagcatctatgcagttttcttccctggggagaaaacttttgtta Alignment from Spaln_aa2Genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA tctcagtcctctgaatgtgattattaatggctgctcccattcccggctagGTAATTCTGGGAATTTTAGTTCCTCCTTCAATTCTTAGTTTGGAGTTCAAGAACAAAGATGACATGCCATATATGACCCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAAGACATGGAGCTAACAgtgagtaagcatctatgcagttttcttccctggggagaaaacttttgtta Alignment from Spaln_nt2Genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA tctcagtcctctgaatgtgattattaatggctgctcccattcccggctagGTAATTCTGGGAATTTTAGTTCCTCCTTCAATTCTTAGTTTGGAGTTCAAGAACAAAGATGACATGCCATATATGACCCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAAGACATGGAGCTAACAgtgagtaagcatctatgcagttttcttccctggggagaaaacttttgtta Alignment from Pairagon GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA tctcagtcctctgaatgtgattattaatggctgctcccattcccggctagGTAATTCTGGGAATTTTAGTTCCTCCTTCAATTCTTAGTTTGGAGTTCAAGAACAAAGATGACATGCCATATATGACCCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAAGACATGGAGCTAACAgtgagtaagcatctatgcagttttcttccctggggagaaaacttttgtta Alignment from Exonerate_protein2genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA tctcagtcctctgaatgtgattattaatggctgctcccattcccggctagGTAATTCTGGGAATTTTAGTTCCTCCTTCAATTCTTAGTTTGGAGTTCAAGAACAAAGATGACATGCCATATATGACCCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAAGACATGGAGCTAACAgtgagtaagcatctatgcagttttcttccctggggagaaaacttttgtta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA tctcagtcctctgaatgtgattattaatggctgctcccattcccggctagGTAATTCTGGGAATTTTAGTTCCTCCTTCAATTCTTAGTTTGGAGTTCAAGAACAAAGATGACATGCCATATATGACCCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAAGACATGGAGCTAACAgtgagtaagcatctatgcagttttcttccctggggagaaaacttttgtta #### Trpm6_ID4468_6 --> 2 - 0 Original Alignment gaGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacaggaGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca Alignment from CESAR gaGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacaggaGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca Alignment from Spaln_aa2Genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacagGAGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca Alignment from Spaln_nt2Genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacagGAGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca Alignment from Pairagon GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacagGAGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca Alignment from Exonerate_protein2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacagGAGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca Alignment from Exonerate_coding2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacagGAGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca Alignment from GeneWise GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tcatcaatcatgatctgtgagctcaaatcatttttgctcattttcaacagGAGTCTCCAAGCATGTAGGAGATGCCCTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAACCAGCGAGAGCTGGTTGGAAAAGATgtaggttcctttccacctcacttttcaatgcaccttacaaaatctctgca #### Trpm6_ID4469_7 --> 0 - 1 Original Alignment GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTtgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc Alignment from CESAR GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTtgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc Alignment from Spaln_aa2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc Alignment from Spaln_nt2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc Alignment from Pairagon GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc Alignment from Exonerate_protein2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc Alignment from Exonerate_coding2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc Alignment from GeneWise GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ctagaaaaaccttgagttctaatgccctgctgaccatcctgtgcatccagGTAGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACCACGCTAAACTGTATGCACTCTCACTTCATTCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGGAGCATCTCTCAATGCAGAAGATACACACTTgtaggtgaattcaccctccggctgcgggcttgcttgtgagtgtgattgtc #### Trpm6_ID4473_11 --> 2 - 0 Original Alignment gtACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccaggtTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta Alignment from CESAR gtACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccaggtTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta Alignment from Spaln_aa2Genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta Alignment from Spaln_nt2Genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta Alignment from Pairagon GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta Alignment from Exonerate_protein2genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta Alignment from Exonerate_coding2genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta Alignment from GeneWise GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttggtgtgccttccatatgggcatttttattgtgctctactcttggccagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACATATGGACAACATTGGAAGgtgagatgagaatgacaccatctgaagaaaagttttttgcatatgattta #### Trpm6_ID4487_24 --> 1 - 1 Original Alignment cAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAa catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagcAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGagtaagattccttggaggaacagaggggaggaagggaaagggtagacattg Alignment from CESAR cAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAa catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagcAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGagtaagattccttggaggaacagaggggaggaagggaaagggtagacattg Alignment from Spaln_aa2Genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagCAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagattccttggaggaacagaggggaggaagggaaagggtagacattg Alignment from Spaln_nt2Genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagCAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagattccttggaggaacagaggggaggaagggaaagggtagacattg Alignment from Pairagon CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagCAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagattccttggaggaacagaggggaggaagggaaagggtagacattg Alignment from Exonerate_protein2genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagCAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagattccttggaggaacagaggggaggaagggaaagggtagacattg Alignment from Exonerate_coding2genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagCAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagattccttggaggaacagaggggaggaagggaaagggtagacattg Alignment from GeneWise CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA catattaaaatgttctctcactctctgtctcctgtttctgccttcttcagCAACATGTACTTAGACATAAAATCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATCATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagattccttggaggaacagaggggaggaagggaaagggtagacattg #### Trpm6_ID4488_25 --> 2 - 2 Original Alignment agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagaaCTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAaggtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc Alignment from CESAR agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagaaCTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAaggtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc Alignment from Spaln_aa2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc Alignment from Spaln_nt2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc Alignment from Pairagon AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc Alignment from Exonerate_protein2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc Alignment from Exonerate_coding2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc Alignment from GeneWise AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcagctctccaagaatggctttgatgaaagcttgcccttgctttccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAGTGCGTGGAAGAATATTTCCACAAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaataacatcttgatccctaaactgctaccagatcagtatcgtcc #### Trpm6_ID4494_29 --> 2 - 0 Original Alignment gtTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtaggaTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt Alignment from CESAR gtTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtaggaTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt Alignment from Spaln_aa2Genome GTTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtagGATTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt Alignment from Spaln_nt2Genome GTTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtagGATTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt Alignment from Pairagon GTTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtagGATTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt Alignment from Exonerate_protein2genome GTTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtagGATTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt Alignment from Exonerate_coding2genome GTTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtagGATTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt Alignment from GeneWise GTTTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACATACTACACAAGCCAGTGACCACCTAAGGCAGCCACAAGAG gaatgttacacatctcaaccaattttctgtcctgccactgttttctgtagGATTAGAGCCTTACATATACCAGAAAATGAAAATGAAGGAAATCAAGCGACACACTACACAAGCCAGTGATTACCTAAGGCAGTCACAAGAGgtatgtaataataattttataacacacttgtacctgtaactctctacttt #### Trpm6_ID4507_36 --> 1 - 1 Original Alignment gTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAg tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcaggTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAggtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact Alignment from CESAR gTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAg tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcaggTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAggtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact Alignment from Spaln_aa2Genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcagGTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAGgtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact Alignment from Spaln_nt2Genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcagGTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAGgtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact Alignment from Pairagon GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcagGTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAGgtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact Alignment from Exonerate_protein2genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcagGTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAGgtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact Alignment from Exonerate_coding2genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcagGTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAGgtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact Alignment from GeneWise GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG tcatgccatagaaaggccaagggctggtgtgtcctgattgtgtctggcagGTTTCTCGAGGTTTCCTTGGTCTACTGTCATTCGGCCAACCAATGGGTAACCATCGAGAAGTACATGACAGGAGAGTTCCGGAAATACAATAACAACAATGGTGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCTCACTGGACCTATAAATACACCCGGGGAGAGCTGTTGGTTTTAGATTTGCAAGgtgagtaattgaaaatgtagagtttccagaaatctaaagggaacaagact #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg cacatagctatgcaggggaacagagagcaaattctttgttttttttctaggcATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAggtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg cacatagctatgcaggggaacagagagcaaattctttgttttttttctaggcATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAggtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from GeneWise GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg #### Trub1_ID12383_3 --> 2 - 0 Original Alignment tgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagtgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc Alignment from CESAR tgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagtgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc Alignment from Spaln_aa2Genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagTGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc Alignment from Spaln_nt2Genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagTGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc Alignment from Pairagon TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagTGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc Alignment from Exonerate_protein2genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagTGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc Alignment from Exonerate_coding2genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagTGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc Alignment from GeneWise TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttcagtatgcattgtgccgttttctcctgcccctgtagTGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaagctagtgataatgtatatctttcttcacttgttgtcctttcacagc #### Trub1_ID12386_6 --> 1 - 1 Original Alignment cTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGg cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagcTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGggtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc Alignment from CESAR cTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGg cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagcTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGggtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc Alignment from Spaln_aa2Genome CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagCTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGGgtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc Alignment from Spaln_nt2Genome CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagCTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGGgtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc Alignment from Pairagon CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagCTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGGgtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc Alignment from Exonerate_protein2genome CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagCTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGGgtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc Alignment from Exonerate_coding2genome CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagCTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGGgtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc Alignment from GeneWise CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG cgcccttagcctcccactgtcccaatctgtttgatttccttcacttatagCTATTCTGCACTGAAAAAGGACGGACAGAGGCTCTCAACACTAATGAAGAAAGGCAAAGTGGTGGAGGCCAGACCAGCACGGCCAGTAACTGTTCACAGTATGTCCCTCCTAAAGCTCCAGCCTCCATTCTTCACACTGGgtaagttgtatgacagtttaccctgcttgtgtctttgttatctggttggc #### Trub1_ID12387_7 --> 2 - 1 Original Alignment atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagaactctctagaggccagcctctcaccttgactggcttctgtttacagatGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAggtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc Alignment from CESAR atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagaactctctagaggccagcctctcaccttgactggcttctgtttacagatGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAggtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc Alignment from Spaln_aa2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctagaggccagcctctcaccttgactggcttctgtttacagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc Alignment from Spaln_nt2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctagaggccagcctctcaccttgactggcttctgtttacagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc Alignment from Pairagon ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctagaggccagcctctcaccttgactggcttctgtttacagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc Alignment from Exonerate_protein2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctagaggccagcctctcaccttgactggcttctgtttacagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc Alignment from Exonerate_coding2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctagaggccagcctctcaccttgactggcttctgtttacagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc Alignment from GeneWise ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctagaggccagcctctcaccttgactggcttctgtttacagATGTTGAATGCGGAGGAGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtaagcaagagaatgggttatcaaccattgtttagatagtcatgctcctc #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt #### Tut1_ID2550_3 --> 0 - 1 Original Alignment GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTg ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTggtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc Alignment from CESAR GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTg ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTggtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc Alignment from Spaln_aa2Genome GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTG ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTGgtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc Alignment from Spaln_nt2Genome GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTG ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTGgtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc Alignment from Pairagon GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTG ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTGgtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc Alignment from Exonerate_protein2genome GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTG ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTGgtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc Alignment from Exonerate_coding2genome GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTG ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTGgtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc Alignment from GeneWise GGGGTGTTTGCCATCGTGGAGATGGGAGACATAAGTGCTCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCAGCTTCCAAGTCTCCCAAAGGAGTGGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCGGATGTGGGGGCCCAGATGGTGAAGCTTGTGGAACTGAGGGAGTTGTCTGAGGCTGAGCGGCAGCTTCGGAACCTTGTTGTGGCCCTGATGCAGGAGGTCTTCACAGAGTTCTTCCCTG ttctgattggatttctgattgccagagatgtgtatgttttctcttgacagGGGGTGTTCGCCATCGTGAAGATGGGAGACATAAGTGCGCGGGAGGCTGTCTTATCACAGCCCAAGCACAGCCTTGGGGGACATGGACTTCGAGTCCGGCCAAGGGAGCAGAAGGAGTTCCAGAGCCCTGCCTCCAAGTCTCCCAAAGGAGCAGACTCAAGTAGTCACCAGCTGGTCCAAGCACTGGCTGAGGCTGCAGATGTGGGGGCCCAGATGGTGAAGCTAGTGGAGTTGAGGGAGTTGTCTGAGGCTGAGCGCCAACTTCGGAACCTTGTTGAGGCCCTGATGCAGGAAGTCTTCACGGAGTTCTTCCTTGgtaagcccccttatgcttactcttatatctctgtaagtttccatcctccc #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg ttactacccccatggcttgcaggcactatcacttcctcttaccgttctaggGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTtggtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg ttactacccccatggcttgcaggcactatcacttcctcttaccgttctaggGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTtggtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from GeneWise GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagaCAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from CESAR aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagaCAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Pairagon ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Exonerate_coding2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from GeneWise ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt #### Uhrf2_ID6377_8 --> 0 - 0 Original Alignment GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt Alignment from CESAR GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt Alignment from Spaln_aa2Genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt Alignment from Spaln_nt2Genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt Alignment from Pairagon GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt Alignment from Exonerate_protein2genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt Alignment from Exonerate_coding2genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt Alignment from GeneWise GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG tacttttttagatactttattcctcagaacaaactctcactgttctgtagGGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTTGCCTCGAACCATTATGGACGAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTGAGAGTCCAGgtaatttgggtttgattagttggaagtgtaaaattcatagaatagatttt #### Uhrf2_ID6384_14 --> 2 - 0 Original Alignment atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagacGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg Alignment from CESAR atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagacGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg Alignment from Spaln_aa2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagACGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg Alignment from Spaln_nt2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagACGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg Alignment from Pairagon ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagACGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg Alignment from Exonerate_protein2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagACGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg Alignment from Exonerate_coding2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagACGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg Alignment from GeneWise ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG gtttctaagagctgtgaggggctaatcactatgcttgtcggacctgccagACGAGTGCCCAGGTGACTCCAAAGTGCTCAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACACCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGTTGTGGGATGAAGTACTCGCATCTCTTGTAGAAGGACCAgtgagcactgcttttctaccagcgtatactgcctttcttaactaatcatg #### Unc93b1_ID212_3 --> 2 - 2 Original Alignment gcCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCag tttacggaggcaagctgattagagcccttgttttccccccttttgccaagggCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCaggtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag Alignment from CESAR gcCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCag tttacggaggcaagctgattagagcccttgttttccccccttttgccaagggCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCaggtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag Alignment from Spaln_aa2Genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG tttacggaggcaagctgattagagcccttgttttccccccttttgccaagGGCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCAGgtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag Alignment from Spaln_nt2Genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG tttacggaggcaagctgattagagcccttgttttccccccttttgccaagGGCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCAGgtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag Alignment from Pairagon GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG tttacggaggcaagctgattagagcccttgttttccccccttttgccaagGGCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCAGgtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag Alignment from Exonerate_protein2genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG tttacggaggcaagctgattagagcccttgttttccccccttttgccaagGGCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCAGgtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag Alignment from Exonerate_coding2genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG tttacggaggcaagctgattagagcccttgttttccccccttttgccaagGGCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCAGgtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag Alignment from GeneWise GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG tttacggaggcaagctgattagagcccttgttttccccccttttgccaagGGCTGCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGCATGGCAACATGGGGCTGCCAGACATAGATAGCAAGATGCTAATGGGTGTCAATGTGACACCTATCGCTGCCTTGCTCTACACACCTGTGCTCATCAGgtgagactgtttctgtgtccaacccagacttagtagttagtggtgtatag #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcaggATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcaggATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgaaaagaagtgtggcagcaggcaggctacctcttcatcttcccttgcagGATGTCCCAGAAGTACTATGAATATTCACACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTCCTCACACGCCCTTTCTCCTGGTTTTCCAGGCCATCTTTTATAGCTTCTTTCATgtgagggctacaggaagccttgtgggagatgggagagggggatagtctgc #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctccttgcaggctccaatgcgaaacatttgcttttcatacagTTGAGCTTCACATGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtccgtggaacctagaagcttgccctccttttcatacacaattcta #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca #### Vegfb_ID1958_2 --> 0 - 1 Original Alignment GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAg gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAggtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from CESAR GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAg gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAggtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Spaln_aa2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Spaln_nt2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Pairagon GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Exonerate_protein2genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Exonerate_coding2genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from GeneWise GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca #### Vldlr_ID5802_3 --> 2 - 1 Original Alignment taAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCc ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagtaCAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCtgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt Alignment from CESAR taAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCc ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagtaCAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCtgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt Alignment from Spaln_aa2Genome TAAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCC ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagTACAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCTgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt Alignment from Spaln_nt2Genome TAAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCC ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagTACAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCTgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt Alignment from Pairagon TAAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCC ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagTACAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCTgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt Alignment from Exonerate_protein2genome TAAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCC ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagTACAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCTgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt Alignment from Exonerate_coding2genome TAAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCC ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagTACAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCTgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt Alignment from GeneWise TAAAGAAGACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGGATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCC ctgaggtctggggcaaaagtaatactaacgtaatctttcatcatgtacagTACAAAAGACATGTACTGAGTCTGACTTCATATGCAAAAACGGCCAGTGTGTTCCTAACAAGAGGCAGTGTGATGGAGATCCAGATTGTGAAGATGGTTCTGATGAAAGCCCTGAACAGTGCTgtattggtgccttgctcactttggactagacctcctttgtgttgttcggt #### Vldlr_ID5806_5 --> 2 - 1 Original Alignment gcAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCc tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcaggcAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCcgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc Alignment from CESAR gcAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCc tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcaggcAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCcgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc Alignment from Spaln_aa2Genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcagGCAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCCgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc Alignment from Spaln_nt2Genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcagGCAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCCgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc Alignment from Pairagon GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcagGCAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCCgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc Alignment from Exonerate_protein2genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcagGCAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCCgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc Alignment from Exonerate_coding2genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcagGCAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCCgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc Alignment from GeneWise GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC tttgtttttttggaagtgctgatgtaatcgtcgtttttgttgcttttcagGCAACATAACATGTGGTGCAGACGAGTTCGCTTGCTCCAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGCTGGACTGTGCCCCACCAACCTGTGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGATGAGTCTCTTGAGCCGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAGTGTGGCTCTGGTAAGTGTATTCACAAAAAATGGCGATGCGATGGAGACCCTGACTGCAAGGACGGCAGTGATGAGGTTAACTGCCgtaagaaactttccagttaaattccatgtgccagccagaagccatttggc #### Vldlr_ID5812_11 --> 1 - 2 Original Alignment tGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGgg aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagtGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGgggtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc Alignment from CESAR tGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGgg aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagtGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGgggtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc Alignment from Spaln_aa2Genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc Alignment from Spaln_nt2Genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc Alignment from Pairagon TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc Alignment from Exonerate_protein2genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc Alignment from Exonerate_coding2genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc Alignment from GeneWise TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG aaggtcaatggtgatgatttttaaatctcatctgcccccatccctgctagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCAGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCTGTTGTCGGGgtatcaagttgatgatttccttccttcaacctttttggctgaaagccacc #### Vldlr_ID5818_17 --> 2 - 1 Original Alignment ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagggATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCtgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct Alignment from CESAR ggATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCt cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagggATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCtgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct Alignment from Spaln_aa2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagGGATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct Alignment from Spaln_nt2Genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagGGATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct Alignment from Pairagon GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagGGATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct Alignment from Exonerate_protein2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagGGATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct Alignment from Exonerate_coding2genome GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagGGATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct Alignment from GeneWise GGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCT cagcctttagtccaaaaccttagaaacctgggtttctcttctctctgcagGGATTAATGTTACCACAGCAGTATCAGAAGTCAGTGTTCCCCCAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTgtgagtaaatgtgttaagaactcactctacgcatgagcaccttagcagct #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag #### Vps13a_ID4066_57 --> 0 - 1 Original Alignment ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAg tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAggtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct Alignment from CESAR ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAg tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAggtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct Alignment from Spaln_aa2Genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAGgtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct Alignment from Spaln_nt2Genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAGgtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct Alignment from Pairagon ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAGgtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct Alignment from Exonerate_protein2genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAGgtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct Alignment from Exonerate_coding2genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAGgtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct Alignment from GeneWise ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG tggcttgcagtgtgatatgctataaagattgtgcctcccctctgccccagATTGAAAATCAGATTCATGGTGCTATTTTTCCTTTCGTGTTTTATCCAATTAAGCCTCCAAGATCAGTCACAATAGACTCAGgtaagtgttacatttaggttgtggcatacacttgtgtcagaagcattcct #### Vps13a_ID4070_53 --> 1 - 0 Original Alignment tTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagtTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt Alignment from CESAR tTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagtTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt Alignment from Spaln_aa2Genome TTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagTTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt Alignment from Spaln_nt2Genome TTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagTTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt Alignment from Pairagon TTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagTTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt Alignment from Exonerate_protein2genome TTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagTTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt Alignment from Exonerate_coding2genome TTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagTTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt Alignment from GeneWise TTCTCTCGGTGAAATAGAAGATTCTCTTCCTCCTGGAAAAGCAGTCTATTATACATGGGCTGACCCAGTGGGCTCTAGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGTGAAGTAACCCATAAGGAT tgtatttgtcagctgcattaatgtaatatttctttctcttgctcttgtagTTCTCTCGGTGAAATAGAAGATTCTCTCCCACCTGGCGAAGTAGTCTATTATACATGGGCTGACCCAGTGGGATCTCGAAAGCTGAAGTGGAGCTGTGGGCAAAGCTATGGAGAGGTAACCCATAAGGATgtgagtatgaagaattgcatgtctgattgtcttcatcacctgctactgtt #### Vps13a_ID4072_51 --> 0 - 0 Original Alignment AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTCTT---------GAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGATgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa Alignment from CESAR AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTCTT---------GAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGATgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa Alignment from Spaln_aa2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTCTT---------GAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGATgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa Alignment from Spaln_nt2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTC---------TTGAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGatgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa Alignment from Pairagon AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTC---------TTGAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGATgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa Alignment from Exonerate_protein2genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTCTT---------GAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGATgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa Alignment from Exonerate_coding2genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTCTT---------GAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGATgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa Alignment from GeneWise AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgtttatacaatatcccctatacattgcccacttgtctctccccacagAGTATCCCCTTCTGGCCTGAGAATGCCTCGAATATTCTTCTT---------GAGAGGAGTGAGGACCCGCCAAAAAGAATATATTTCAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGATgtaagtgctttgaagttcctgattattattttgtgtatattacggaaaaa #### Vps13a_ID4075_48 --> 0 - 0 Original Alignment GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa Alignment from CESAR GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa Alignment from Spaln_aa2Genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa Alignment from Spaln_nt2Genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa Alignment from Pairagon GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa Alignment from Exonerate_protein2genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa Alignment from Exonerate_coding2genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa Alignment from GeneWise GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG ttttcagatgcatgtttaagtttggttttatttcaatttttttaatatagGGCATTGAGAATACTGTTGTTACTCTAAGTGAAGGACATTCGTCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACCTAAAATTACTTGATTATCTTAATCATGATTGGAAGAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAACTTTACCTGTCTGACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTCGTGGCATTTCATAGTCCATATTGGATGGTCAATAAAACCAATAGAATGCTACGGTACAAAGCAGATGGAATTCACCGAAAACATCCGCCTAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAATCACTTTTTTAACAACAATAAAgtatttgtcatttcttgctctgagaaataaaatctgacatatacataaaa #### Vps13a_ID4085_38 --> 1 - 1 Original Alignment aATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAg catacatgactagtacagctttagatatatctttgtttttaatcttctaggATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAggtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt Alignment from CESAR aATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAg catacatgactagtacagctttagatatatctttgtttttaatcttctaggATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAggtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt Alignment from Spaln_aa2Genome AATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAG catacatgactagtacagctttagatatatctttgtttttaatcttctagGATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAGgtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt Alignment from Spaln_nt2Genome AATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAG catacatgactagtacagctttagatatatctttgtttttaatcttctagGATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAGgtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt Alignment from Pairagon AATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAG catacatgactagtacagctttagatatatctttgtttttaatcttctagGATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAGgtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt Alignment from Exonerate_protein2genome AATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAG catacatgactagtacagctttagatatatctttgtttttaatcttctagGATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAGgtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt Alignment from Exonerate_coding2genome AATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAG catacatgactagtacagctttagatatatctttgtttttaatcttctagGATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAGgtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt Alignment from GeneWise AATGATAGGATTGACTGTTGGCTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGACTGATGCAGTTGTCCAAGAAATGTACGTTTGTGCGAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCCTACATGACTAGTACGGCTTTAGAAACCAGCGTTCAAACAAGGACTACTAGAGAAG catacatgactagtacagctttagatatatctttgtttttaatcttctagGATGATAGGTTTGACTGTTGGTTTTGACAAGAAGGACATGGTGGATATAAAGTATAGAAAAATCAAAACTTTTGTTGTGGCTGATGCAGTTGTCCAAGAGACGTATGTTTGTTCAAGTGTGGAGTTTCTGATGACTGTTGCCCATATCTTTTTTGATGCGTACATGACTAGTACAGCTTTAGAAACCAGTGTTCAAACAAGGACTACAAAAGAAGgtgagctgccaagtaatcattttaacgttatggttgcaccttttagggtt #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG tctttctaaaagtttccccatgttgttatatgcttcttttttcttcacagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAATTATCCTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtatgaacatctcataaaatgtatttagtattgacaaaatgaaaaagaca #### Vps13a_ID4094_29 --> 0 - 1 Original Alignment GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTg tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTACAT------GCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTggtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac Alignment from CESAR GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTg tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTACAT------GCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTggtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac Alignment from Spaln_aa2Genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTACAT------GCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTGgtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac Alignment from Spaln_nt2Genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTAC------ATGCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTGgtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac Alignment from Pairagon GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTACAT------GCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTGgtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac Alignment from Exonerate_protein2genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTACAT------GCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTGgtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac Alignment from Exonerate_coding2genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTACAT------GCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTGgtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac Alignment from GeneWise GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tcaaatcagatccttattagactaacactcctgacacctacttcccctagGTCAATTTTTCCTCTTTGGATATCCATCTACAT------GCACTTCTAAATACAATGAATTATCTTAATAATATTCTTCCAGAATTACGGGAAGAGTCAGCCTCAGTGTCTGCTGCAGAACCAGAGGACAAAGGGGACATCATTAAAAAACTTGgtgaggttcttttatgtttattttttatgatgattgtccccaattaaaac #### Vps13a_ID4111_12 --> 0 - 2 Original Alignment TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGtggtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from CESAR TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGtggtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Spaln_aa2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Spaln_nt2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Pairagon TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Exonerate_protein2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Exonerate_coding2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from GeneWise TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaagctcagaaaatgttctctctttctctctgttttaaggtAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaagctcagaaaatgttctctctttctctctgttttaaggtAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from GeneWise GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg #### Vps13a_ID4120_3 --> 0 - 1 Original Alignment CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAg ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAggtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt Alignment from CESAR CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAg ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAggtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt Alignment from Spaln_aa2Genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAGgtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt Alignment from Spaln_nt2Genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAGgtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt Alignment from Pairagon CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAGgtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt Alignment from Exonerate_protein2genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAGgtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt Alignment from Exonerate_coding2genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAGgtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt Alignment from GeneWise CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG ccgaactttatatgaaataattttttggtttcttgttacttcacttttagCATGAATTGGACGTACCGTTCAAAGTTAGTGTTGGTCATATAGgtaagcagtgtctactcttggggtgttcttggggactgggcctacacctt #### Vti1a_ID11709_7 --> 0 - 2 Original Alignment CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGAcggtaggtgatagatgggatcacagcagctggcacagccccaagatccacag Alignment from CESAR CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGAcggtaggtgatagatgggatcacagcagctggcacagccccaagatccacag Alignment from Spaln_aa2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGACGgtaggtgatagatgggatcacagcagctggcacagccccaagatccacag Alignment from Spaln_nt2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGACGgtaggtgatagatgggatcacagcagctggcacagccccaagatccacag Alignment from Pairagon CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGACGgtaggtgatagatgggatcacagcagctggcacagccccaagatccacag Alignment from Exonerate_protein2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGACGgtaggtgatagatgggatcacagcagctggcacagccccaagatccacag Alignment from Exonerate_coding2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGACGgtaggtgatagatgggatcacagcagctggcacagccccaagatccacag Alignment from GeneWise CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG aatcatctaagtccatttacctctgcatccaggcccttctcttcccctagCTCCGGGATGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACAGGGATGCTACGACGgtaggtgatagatgggatcacagcagctggcacagccccaagatccacag #### Vwa2_ID12231_4 --> 0 - 2 Original Alignment GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCaa tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCaagtaatggtactgggagcatgctcactaaaactttgtccttccttccatct Alignment from CESAR GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCaa tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCaagtaatggtactgggagcatgctcactaaaactttgtccttccttccatct Alignment from Spaln_aa2Genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAAgtaatggtactgggagcatgctcactaaaactttgtccttccttccatct Alignment from Spaln_nt2Genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAAgtaatggtactgggagcatgctcactaaaactttgtccttccttccatct Alignment from Pairagon GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAAgtaatggtactgggagcatgctcactaaaactttgtccttccttccatct Alignment from Exonerate_protein2genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAAgtaatggtactgggagcatgctcactaaaactttgtccttccttccatct Alignment from Exonerate_coding2genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAAgtaatggtactgggagcatgctcactaaaactttgtccttccttccatct Alignment from GeneWise GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA tatgatttgacagacatcttcagagcatctctctgtgctctctttctcagGTCAGAGTTGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAAgtaatggtactgggagcatgctcactaaaactttgtccttccttccatct #### Vwa2_ID12232_5 --> 1 - 2 Original Alignment aGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag accagaaactttaagctttgttctttctcaggtcccctcccctccaacagaGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCaagtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta Alignment from CESAR aGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag accagaaactttaagctttgttctttctcaggtcccctcccctccaacagaGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCaagtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta Alignment from Spaln_aa2Genome AGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG accagaaactttaagctttgttctttctcaggtcccctcccctccaacagAGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta Alignment from Spaln_nt2Genome AGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG accagaaactttaagctttgttctttctcaggtcccctcccctccaacagAGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta Alignment from Pairagon AGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG accagaaactttaagctttgttctttctcaggtcccctcccctccaacagAGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta Alignment from Exonerate_protein2genome AGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG accagaaactttaagctttgttctttctcaggtcccctcccctccaacagAGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta Alignment from Exonerate_coding2genome AGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG accagaaactttaagctttgttctttctcaggtcccctcccctccaacagAGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta Alignment from GeneWise AGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG accagaaactttaagctttgttctttctcaggtcccctcccctccaacagAGCTGGGCGCACCAAGACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGCAGAAATGACTCTGTGCCCCAGATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAGCTAAGCAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaacaaaatgcaacaatcagcttcaagcagtgggaccaatgtgcctgta #### Vwa2_ID12233_6 --> 1 - 1 Original Alignment gTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAg aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttaggTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTggtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa Alignment from CESAR gTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAg aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttaggTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTggtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa Alignment from Spaln_aa2Genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttagGTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTGgtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa Alignment from Spaln_nt2Genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttagGTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTGgtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa Alignment from Pairagon GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttagGTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTGgtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa Alignment from Exonerate_protein2genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttagGTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTGgtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa Alignment from Exonerate_coding2genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttagGTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTGgtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa Alignment from GeneWise GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG aggaatgtcaggaaaggcatgatactggtaaaatgacaaatgtgtcttagGTGGGATGAGCTGCTCACACTGGCCGGTGAGCCAAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCTACCAATGGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGCACCACTGCTGATCCTGgtgaagctcacacgactacattggagtagtcttgaacctcacagaccaaa #### Vwa2_ID12234_7 --> 2 - 2 Original Alignment acTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACag tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagacTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACaggtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta Alignment from CESAR acTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACag tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagacTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACaggtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta Alignment from Spaln_aa2Genome ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACAGgtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta Alignment from Spaln_nt2Genome ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACAGgtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta Alignment from Pairagon ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACAGgtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta Alignment from Exonerate_protein2genome ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACAGgtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta Alignment from Exonerate_coding2genome ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACAGgtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta Alignment from GeneWise ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG tcccttgtctgatggtgtgtgtgcctgtctgcttttctcccgtcttttagACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACACTAGAGATGGTTAGGGAGCTCACTGGCAATGCCCTGAGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCCCTGCCCTGTCCCTTCTACAGgtaggtccaaagggtctgggggtgtagtccccatgattctgagtgctgta #### Vwa2_ID12237_10 --> 2 - 1 Original Alignment ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagctCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAggtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc Alignment from CESAR ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagctCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAggtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc Alignment from Spaln_aa2Genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagCTCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAGgtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc Alignment from Spaln_nt2Genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagCTCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCCA---CCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAGgtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc Alignment from Pairagon CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagCTCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCCA---CCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAGgtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc Alignment from Exonerate_protein2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagCTCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAGgtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc Alignment from Exonerate_coding2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagCTCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAGgtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc Alignment from GeneWise CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccgcagcggccccaggtaacagtgtttcatataaaccactccacagCTCCAAAGCTGAGCCTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCCGGAGGGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGTTATGGTAGGAATCTAATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGCATTCCCTTCAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCAGAACATGGCTTTGGGAGTGCAAGCAGGACTGGTCAGGACAGGCCACGCCGAGTAGTAGTTCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCATGCAAGGGCTCGGGAGCTACTGCTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGTTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATCCCAGAGCTGCAGAGGAGGCGTTGCAGCCAGCCACGGCCAGgtgagtctgctgctgaacctggggccatcttgttaagtagacagatccgc #### Vwce_ID2947_2 --> 1 - 1 Original Alignment aCGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGc agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagaCGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTAcgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt Alignment from CESAR aCGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGc agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagaCGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTAcgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt Alignment from Spaln_aa2Genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagACGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTACgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt Alignment from Spaln_nt2Genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagACGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTACgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt Alignment from Pairagon ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagACGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTACgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt Alignment from Exonerate_protein2genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagACGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTACgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt Alignment from Exonerate_coding2genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagACGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTACgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt Alignment from GeneWise ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC agtggggagctcacttcctacaaattgtatctgttttctcttctccaaagACGCTGTCTGGGGCCCCATGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGTGGGCACTGTACCTTACgtataaacccatctatccttgcgactaaagtctgtgcattgcgagggctt #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagccCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagccCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Spaln_aa2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Spaln_nt2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Pairagon CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from GeneWise CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagggGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagggGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga Alignment from GeneWise GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA gttggtcccttgtttgtcaccccagtatctgctcttgtgtgcatttccagGGGTGAACCTTCAACGGAAACATACAGCTAATTTCGCACCATCTGGACAGCCACGGCGGGAAGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaagcaggctctggctgggccagagctacaggatgcctgacaatcctga #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga #### Wdr96_ID10335_36 --> 0 - 0 Original Alignment TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa Alignment from CESAR TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa Alignment from Spaln_aa2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa Alignment from Spaln_nt2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa Alignment from Pairagon TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa Alignment from Exonerate_protein2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa Alignment from Exonerate_coding2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa Alignment from GeneWise TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG aatttatccttacatgtattgtgatacagacctcagctctctccctgtagTACCTAAACGAACCGAACTACGAGAATGTGATTGCCATTCTGATTGGAATAATGGAGCAAACAATTGGTGTTATAGATAAGgtaagtgtcaagcttaccaattactcaaaagctaagtccaccatgatgaa #### Wdr96_ID10341_30 --> 0 - 0 Original Alignment ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag Alignment from CESAR ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag Alignment from Spaln_aa2Genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag Alignment from Spaln_nt2Genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag Alignment from Pairagon ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag Alignment from Exonerate_protein2genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag Alignment from Exonerate_coding2genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag Alignment from GeneWise ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAA gtttgccttgagaactcttcagttgtggaacttcttttctccacccctagACCAAAACTGCAGAAGCCATCCAGAAGGCAAGAGAAGGTCTAGATGTATTCAAGGAGCACCATGACATGTTGGTGGTGAAGGATAAAgtgagtcatgagctccagaagagtcattgccctcatgatgggcagaagag #### Wdr96_ID10347_24 --> 0 - 0 Original Alignment GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct Alignment from CESAR GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct Alignment from Spaln_aa2Genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct Alignment from Spaln_nt2Genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct Alignment from Pairagon GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct Alignment from Exonerate_protein2genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct Alignment from Exonerate_coding2genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct Alignment from GeneWise GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG aagatgttcaatacaatgtgttttcatcagacactttgttcatttcacagGATATTATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAGAAAGAGATTAAAATCGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATCTCAGACTTGGAATTAGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAGCCAGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgagggctaacgatcttatcctatcccttttaatcccatcttttcctct #### Wdr96_ID10351_20 --> 0 - 0 Original Alignment ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga Alignment from CESAR ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga Alignment from Spaln_aa2Genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga Alignment from Spaln_nt2Genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga Alignment from Pairagon ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga Alignment from Exonerate_protein2genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga Alignment from Exonerate_coding2genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga Alignment from GeneWise ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG gtgttttgttgttcaagtctttgctcgctttttgtggtcctgttgtacagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATCATTGCAAAGCTAGATGACCAGGAGTTTTGTCTGGACGCCGATGAACTGGAAAGGCTTCATGATGAATGCGAGGAGGAAGTAGCAAAGgtaaggaaagacctcacactacactcccaaggaggctgtgacagccaaga #### Wdr96_ID10358_13 --> 2 - 1 Original Alignment agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagagACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAggtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc Alignment from CESAR agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagagACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAggtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc Alignment from Spaln_aa2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagAGACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAGgtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc Alignment from Spaln_nt2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagAGACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAGgtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc Alignment from Pairagon AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagAGACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAGgtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc Alignment from Exonerate_protein2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagAGACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAGgtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc Alignment from Exonerate_coding2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagAGACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAGgtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc Alignment from GeneWise AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG ctggtagaatgatgcagggctcttaatagactttctttttccccccaaagAGACAGGCAAGGACATCCTGCAGATATCCACAGTATCTGTCATGGAATCAGATGTAGTTGCAGTGCTGGTGTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATATTTTACCCTGCCAGTCATGTTACCAGAAGgtcagtctaaataagcactcagctgcttatccctggcccagaaaagttgc #### Wdr96_ID10360_11 --> 0 - 2 Original Alignment GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGac tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGatgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa Alignment from CESAR GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGac tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGatgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa Alignment from Spaln_aa2Genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGATgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa Alignment from Spaln_nt2Genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGATgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa Alignment from Pairagon GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGATgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa Alignment from Exonerate_protein2genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGATgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa Alignment from Exonerate_coding2genome GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGATgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa Alignment from GeneWise GCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGGCTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAGTCACCAGTGAAGATAGTGAC tagaatttctagaactaaaggggcatcttcctttgttttgtttcctctagGCAACAGCTCTGGCATGCTCACCTTCCTCACCAACAGCTGCTGTGGGGACAGTGGATGACTATGTTTACTTTCTGAACATTCTCGATGTAGAATCTCCTCAGATGATCCACCAGGCCTTCCTCTCTCAGTCACCAGTGAAGATAGTGATgtgagaccacccagcgatgttatcatcagacttgcctatagggagtgcaa #### Wdr96_ID10363_8 --> 0 - 0 Original Alignment GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga Alignment from CESAR GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga Alignment from Spaln_aa2Genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga Alignment from Spaln_nt2Genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga Alignment from Pairagon GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga Alignment from Exonerate_protein2genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga Alignment from Exonerate_coding2genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga Alignment from GeneWise GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG aagtcaagcatagcctacaccacttctgtgtgtttgtatcttctttatagGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGAGTTTGATGGGCCGGTGTTACATCTGGTGTTCTCCCCCAGTTACAAAATGCTACTGATTCAAACAGACAAGgtgagtaagcaattttgggatgtccacctttaggcactgtttgtgcatga #### Wdr96_ID10364_7 --> 2 - 0 Original Alignment atGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagatGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa Alignment from CESAR atGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagatGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa Alignment from Spaln_aa2Genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagATGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa Alignment from Spaln_nt2Genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagATGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa Alignment from Pairagon ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagATGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa Alignment from Exonerate_protein2genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagATGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa Alignment from Exonerate_coding2genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagATGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa Alignment from GeneWise ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caacatgaggcatctggtgcagcttgcctcagcctgcctctccatttcagATGGAGCCCAACTCATCAACCCACTCACACTAGTGTACCAAAAGGACAGCATACTTGCCTCTGGAGTTgtgagatattctccttctcagaacccctcacttcataacaaaaaagaaaa #### Wdr96_ID10366_5 --> 1 - 0 Original Alignment gTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccaggTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGGT---GTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat Alignment from CESAR gTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccaggTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGGT---GTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat Alignment from Spaln_aa2Genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccagGTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGGT---GTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat Alignment from Spaln_nt2Genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccagGTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGG---TGTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat Alignment from Pairagon GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccagGTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGG---TGTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat Alignment from Exonerate_protein2genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccagGTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGGT---GTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat Alignment from Exonerate_coding2genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccagGTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGGT---GTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat Alignment from GeneWise GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG gggcaagatccctcttgccccatttctttttcctctttcctcttatccagGTCTGTCAAGCTACCCCTAGAAGATGCAACATTCCTAAACGAGCCTGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTAATTTATGGT---GTATTGCCACTGTCAGCCATTGCTGGGCTGGTAGGGGAAGAGGGAGAGCCTTTCAGGgtaagaatctttcttgcttgaaggcaagtatcttgaaagtgggatctcat #### Wnt8b_ID9021_4 --> 2 - 1 Original Alignment ctAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGg tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagctAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGggtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac Alignment from CESAR ctAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGg tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagctAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGggtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac Alignment from Spaln_aa2Genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagCTAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGGgtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac Alignment from Spaln_nt2Genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagCTAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGGgtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac Alignment from Pairagon CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagCTAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGGgtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac Alignment from Exonerate_protein2genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagCTAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGGgtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac Alignment from Exonerate_coding2genome CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagCTAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGGgtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac Alignment from GeneWise CTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGG tatgtgtgtgtgatatagaggaacgaactgggcattttctttatttgtagCTAACCAGGAGACAGCATTTGTGCACACGATCATCTCTGCTGGGGTTATGTACACCCTGACTAGAAACTGCAGTCTTGGAGACTTTGACAATTGTGGCTGTGATGACTCCCGAAATGGCCGACTGGgtgagtagaaatggggtgattagtttgtgtaagtaaagctcccaagcgac #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagggGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagggGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg #### Xpnpep1_ID11147_9 --> 0 - 0 Original Alignment GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct Alignment from CESAR GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct Alignment from Spaln_aa2Genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct Alignment from Spaln_nt2Genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct Alignment from Pairagon GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct Alignment from Exonerate_protein2genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct Alignment from Exonerate_coding2genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct Alignment from GeneWise GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC ctggtggccactgaccagcctgttggctcttttccttagccaagtgccagGATCACCGCTGCTGTATGCCTTACGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTCCACCGAGTCAGATGGCATGAGGCGGGCTCATgtaggaagagtggctggggtgggtgacatggtgagagtaagaatgaccct #### Xpnpep1_ID11154_3 --> 2 - 1 Original Alignment gcACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGg gctctactgtcttcatacagactctctcttgattttcctctctccttcaggcACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGggtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac Alignment from CESAR gcACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGg gctctactgtcttcatacagactctctcttgattttcctctctccttcaggcACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGggtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac Alignment from Spaln_aa2Genome GCACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGG gctctactgtcttcatacagactctctcttgattttcctctctccttcagGCACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGGgtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac Alignment from Spaln_nt2Genome GCACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGG gctctactgtcttcatacagactctctcttgattttcctctctccttcagGCACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGGgtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac Alignment from Pairagon GCACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGG gctctactgtcttcatacagactctctcttgattttcctctctccttcagGCACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGGgtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac Alignment from Exonerate_protein2genome GCACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGG gctctactgtcttcatacagactctctcttgattttcctctctccttcagGCACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGGgtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac Alignment from Exonerate_coding2genome GCACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGG gctctactgtcttcatacagactctctcttgattttcctctctccttcagGCACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGGgtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac Alignment from GeneWise GCACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGACTGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGG gctctactgtcttcatacagactctctcttgattttcctctctccttcagGCACAGCCATCATCACAGAGGAGCATGCAGCCATGTGGACTGATGGGCACTACTTCCTTCAGGTTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGGgtgagtaggagatgggttggtagaaacaggggccagcctcctgaacttac #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaacctacagctatttctgcttatctgcagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttattctgcaattatgtaACCTACAGCTATTTCTGCTTATCTGCAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgccctgagcccccgggaggggggaggcagggtttgtagccaggatt #### Yif1a_ID832_4 --> 0 - 1 Original Alignment AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAagtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg Alignment from CESAR AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAagtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg Alignment from Spaln_aa2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAAgtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg Alignment from Spaln_nt2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAAgtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg Alignment from Pairagon AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAAgtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg Alignment from Exonerate_protein2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAAgtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg Alignment from Exonerate_coding2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAAgtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg Alignment from GeneWise AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggaagatcattttactgcgcttattgtcctttggttttattcttgaagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCCGACCTCTATATCCCAAgtgagccgctgatgtacagccaaccttcatctacgtgcctagccacaacg #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACaggtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACaggtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactataatcgtggtcaaggtctttgttgttcactctgcagGGCAGGAATGACATTAGCACTGTATCCATCTGCAAGAAGTGTATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtattgctgagctctgctctgtgcctcactcatttggggccaaactgacc #### Zdhhc16_ID8348_5 --> 2 - 0 Original Alignment ccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt Alignment from CESAR ccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt Alignment from Spaln_aa2Genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt Alignment from Spaln_nt2Genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt Alignment from Pairagon CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt Alignment from Exonerate_protein2genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt Alignment from Exonerate_coding2genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt Alignment from GeneWise CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG ggataaccccaaactatatctgatcttaaacaatgccttctgtttttcagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaggtctatgactagcaaaaggctaaggcaaacatagcacaaacctctt #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagggACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAaggtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagggACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAaggtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAAGgtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAAGgtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAAGgtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAAGgtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAAGgtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatcagcagacgacaggcggctgcccgcagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAAGGTGCTGCCGGCAGTACATCTGAAAAATCAAGgtaagtgggaatgtttctcagtttttctagactaagctgtttttgctatg #### Zfp91_ID3463_3 --> 2 - 1 Original Alignment atCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATg tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagatCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATggtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg Alignment from CESAR atCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATg tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagatCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATggtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg Alignment from Spaln_aa2Genome ATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATG tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATGgtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg Alignment from Spaln_nt2Genome ATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATG tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATGgtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg Alignment from Pairagon ATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATG tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATGgtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg Alignment from Exonerate_protein2genome ATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATG tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATGgtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg Alignment from Exonerate_coding2genome ATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATG tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATGgtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg Alignment from GeneWise ATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTCCCTCAGGAAGTTTCCATTACTACAACTAGAGCTAGCCGGAGCTGGCGCAGTAGTAGCAGGACCTCTATCTCTCGCCTTCGAGACAGTGAGAATACTCGGAGCTCTAGGTCCAAGACTGGCTCCTTGCAACTCGTCTGCAAGACAGAACCAATTACTGATCAACTTGATTATG tggttattggctaactgaaatcttgacaaacctgcatgtttctgacacagATCCCAAGGAAGAGAAAGAAGATGATTCTGTCCTTCCTCAGGAAGTTTCCATTACAACAACTAGAGCTAGCTGCAGCTGGCGCAGTAGTAGCAGGACTTCCATCTCTCGACTTCGAGATAGTGAGAACACCCGGAGCTCTAGGTCCAAGACTTGCTCCTTGCAACTTGTCTGCAAAACAGAACCACTTACTGATCAACTTGATTATGgtaggctacaaataaacaatgcttcttcacatacttcattgctagatgtg #### Zfp91_ID3464_2 --> 1 - 1 Original Alignment gTGTATAGAAAAACTAACAACTGATAAAg tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaaggTGTATAGAAAAACTAACAACTGATAAAggtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc Alignment from CESAR gTGTATAGAAAAACTAACAACTGATAAAg tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaaggTGTATAGAAAAACTAACAACTGATAAAggtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc Alignment from Spaln_aa2Genome GTGTATAGAAAAACTAACAACTGATAAAG tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaagGTGTATAGAAAAACTAACAACTGATAAAGgtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc Alignment from Spaln_nt2Genome GTGTATAGAAAAACTAACAACTGATAAAG tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaagGTGTATAGAAAAACTAACAACTGATAAAGgtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc Alignment from Pairagon GTGTATAGAAAAACTAACAACTGATAAAG tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaagGTGTATAGAAAAACTAACAACTGATAAAGgtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc Alignment from Exonerate_protein2genome GTGTATAGAAAAACTAACAACTGATAAAG tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaagGTGTATAGAAAAACTAACAACTGATAAAGgtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc Alignment from Exonerate_coding2genome tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaaggtgtatagaaaaactaacaactgataaaggtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc Alignment from GeneWise GTGTATAGAAAAACTAACAACTGATAAAG tggggtatgtaaaaaattattcatttaataactttgtaatttgcttaaagGTGTATAGAAAAACTAACAACTGATAAAGgtgagttccattgactgttctgtagtttgaaagaaagggcctcattattc #### Zfyve27_ID8421_3 --> 2 - 2 Original Alignment gtGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCtt gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcaggtGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTttgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc Alignment from CESAR gtGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCtt gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcaggtGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTttgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc Alignment from Spaln_aa2Genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcagGTGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTTTgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc Alignment from Spaln_nt2Genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcagGTGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTTTgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc Alignment from Pairagon GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcagGTGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTTTgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc Alignment from Exonerate_protein2genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcagGTGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTTTgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc Alignment from Exonerate_coding2genome GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcagGTGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTTTgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc Alignment from GeneWise GTGCGTGGTACTCCATGGGTGCCTTGATGATCTCGGTGCCTGCCCTACTGGGCTACCTTCAGGAGGTGTGCCGGGGACAGCTGCCAGAGTCGGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCTGCAGAGAGTTCGCCTTTCCCGAGTGCACCTTTCCCGCCCTGAGGCTGTTGCTGAGGTGAAGAGCTT gtcgcaatggaggcatgtgcttgcccctccctcctctttttatgtggcagGTGCATGGTACTCCATGGGTGCTTTGATGATCTCAGTTCCCGCCCTACTGGGCTACCTTCAGGAGGTATGTCGGGGACAGCTGCCAGAGTCAGAGCTGATGCGGAGGAAGTACCACAGCATAAGGCAGGAAGACCCGCAGAGAGTTCGCCTTTCCCAAGTGCATCTTTCCCGCCCTGAAGCTGTTGCTGAGGTGAAGAGTTTgtaaaagttgcagggcagcccagaatatctgggagcaagccagtgccccc #### Zfyve27_ID8424_6 --> 2 - 0 Original Alignment tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagtgGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt Alignment from CESAR tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagtgGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt Alignment from Spaln_aa2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagTGGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt Alignment from Spaln_nt2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagTGGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt Alignment from Pairagon TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagTGGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt Alignment from Exonerate_protein2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagTGGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt Alignment from Exonerate_coding2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagTGGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt Alignment from GeneWise TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaatgatgtagtatattctccagctcacccttcttgttcaccgtcagTGGTGTGTGAGTACAGAGCCTGCCTGCAGCGAAGGATCAACCCACGGCAGGAAGAGTGTGCATGTGAGAGCTCAGCACTACAGGGGGCTGGAGGGCGGGGCCTGCTGGACAGCTCGCCTGCTCCCGCACCAACTGAGgtatgtgcctccccatgggcatggcctgttgcctgtctgtgagggccttt #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagatAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagatAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct ####