#### 1700017D01Rik_ID3125_3 --> 0 - 0 Original Alignment TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg Alignment from CESAR TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg Alignment from Spaln_aa2Genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg Alignment from Spaln_nt2Genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg Alignment from Pairagon TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg Alignment from Exonerate_protein2genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg Alignment from Exonerate_coding2genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg Alignment from GeneWise TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cctattgagaagaggatagattgtgatgactttactctttctgcctacagTTCATCAACTCAGGATCCAGCAGTATAACTCAGGGCATTTCTTCAGTATTTCAGgtgagcgggagagctacacaaaaccacagagatagaaatgttttatgatg #### 1700017D01Rik_ID3126_2 --> 0 - 0 Original Alignment GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca Alignment from CESAR GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca Alignment from Spaln_aa2Genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca Alignment from Spaln_nt2Genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca Alignment from Pairagon GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca Alignment from Exonerate_protein2genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca Alignment from Exonerate_coding2genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca Alignment from GeneWise GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT gtacccctgtagggtgcgcaaataatgcgcaatctctcctccctgtccagGGTGCGCAAATAATGCTTGGTCTGATTGACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAAGTATGGCATTAGCCATAAACTTATGTTAGCCAGTATCTGCTACCTATTTGTGTCTGGGACATTTgtaggggaaccatagccattggtgatttctgtctgtctgattctagctca #### 1700025F22Rik_ID3133_3 --> 0 - 0 Original Alignment CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac Alignment from CESAR CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac Alignment from Spaln_aa2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac Alignment from Spaln_nt2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac Alignment from Pairagon CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac Alignment from Exonerate_protein2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac Alignment from Exonerate_coding2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac Alignment from GeneWise CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataagttcaagtgctagaactgtatctctttcttccacagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACTGTTGAAATGATAGTGACTTCCAGTGTATATTCTACTCTGTGGCAATATgtaagtatggggtttctgaaagattttcatcatgaatacataattgtgac #### 1700025F22Rik_ID3134_2 --> 0 - 0 Original Alignment TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa Alignment from CESAR TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa Alignment from Spaln_aa2Genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa Alignment from Spaln_nt2Genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa Alignment from Pairagon TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa Alignment from Exonerate_protein2genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa Alignment from Exonerate_coding2genome TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa Alignment from GeneWise TTTAGCCTATCAGGAAGTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACG ttgacatgaataccaggcaataacaaatacttcttcaactttgaccacagTTTAGCCTATCAGGAAGTTTATCAATAATACTACAGCAGAGGCCCTCAAATCATACAgtaaagcaggagacttggggataagttccacgaggtaggaagtgcaagaa #### 1700028P14Rik_ID5186_3 --> 0 - 2 Original Alignment AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAag ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGcggtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt Alignment from CESAR AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAag ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGcggtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt Alignment from Spaln_aa2Genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGCGgtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt Alignment from Spaln_nt2Genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGCGgtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt Alignment from Pairagon AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGCGgtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt Alignment from Exonerate_protein2genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGCGgtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt Alignment from Exonerate_coding2genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGCGgtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt Alignment from GeneWise AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG ttcagtcttatttgtgaatagtttctccttttttgttttctttcatgtagAGGTGGATGTCAGGAGCACGTGAACAGATGGCCCAAGTTCTTGTAAATAAAGACCTGGTGGAGAAGAAGAAAACTGGCTTGCTGGATGAGGAAACACTATGCCCTGGTATTTTGGAGCGgtaaaaattgttctgctgcttgtaacaccctatcaccacagcttttaggt #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat #### 1700123I01Rik_ID1494_6 --> 0 - 2 Original Alignment GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ctagactcaagactcggagtgactctttgtcctcatgtccttacctccagGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACaggtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc Alignment from CESAR GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ctagactcaagactcggagtgactctttgtcctcatgtccttacctccagGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACaggtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc Alignment from Spaln_aa2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagactcaagactcggagtgactctttgtcctcatgtccttacctccagGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc Alignment from Spaln_nt2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagactcaagactcggagtgactctttgtcctcatgtccttacctccagGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc Alignment from Pairagon GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagactcaagactcggagtgactctttgtcctcatgtccttacctccagGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc Alignment from Exonerate_protein2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagactcaagactcggagtgactctttgtcctcatgtccttacctccagGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc Alignment from Exonerate_coding2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagactcaagactcggagtgactctttgtcctcatgtccttacctccagGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc Alignment from GeneWise -AAACCAGCAGATGATATTCCTCTTGAGTTGGTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagactcaagactcggagTGACTCTTTGTCCTCATGTCCTTACCTCCAGGTCCTAGCTGAGACAGAAGCAGAAGAAGCTACAATGAGGGAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCTCACAGgtaaggggtggagagatccttgtcgcttagtcctgtttgttatctctgcc #### 1700123I01Rik_ID1498_8 --> 0 - 1 Original Alignment AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGg tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGggtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat Alignment from CESAR AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGg tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGggtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat Alignment from Spaln_aa2Genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGGgtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat Alignment from Spaln_nt2Genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGGgtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat Alignment from Pairagon AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGGgtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat Alignment from Exonerate_protein2genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGGgtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat Alignment from Exonerate_coding2genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGGgtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat Alignment from GeneWise AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG tgagtgctccatgtgctcttgcctcctgatctgctatctctcccatctagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGAACAGGgtacaataggttcacattggggcttaaaattttgtcttggaaacaaatat #### 1700123I01Rik_ID1499_9 --> 2 - 2 Original Alignment atGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAag aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagatGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAaggtacagtagtggtcagcagtggtcagtggtcactgtcaagctttgaagta Alignment from CESAR atGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAag aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagatGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAaggtacagtagtggtcagcagtggtcagtggtcactgtcaagctttgaagta Alignment from Spaln_aa2Genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagATGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAGgtacagtagtggtcagcagtggtcagtggtcactgtcaagctttgaagta Alignment from Spaln_nt2Genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagATGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAGgtacagtagtggtcagcagtggtcagtggtcactgtcaagctttgaagta Alignment from Pairagon ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagATGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAGgtacagtagtggtcagcagtggtcagtggtcactgtcaagctttgaagta Alignment from Exonerate_protein2genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagATGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAGgtacagtagtggtcagcagtggtcagtggtcactgtcaagctttgaagta Alignment from Exonerate_coding2genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagATGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAGgtacagtagtggtcagcagtggtcagtggtcactgtcaagctttgaagta Alignment from GeneWise ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAGTGCTCTCTTCCCGTTCCGGTACTTCTTCAAGAAGAGCGGTCAG aggcctgaatacgccaggaccactccccgacgtgaaggttctgcttgtagATGCTGCATTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCCCCACTGCAACATAGCAGTCCTCCACCTCCAAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTA------------------AGGTAC---------AGTAGTGGTCAGcagtggtcagtggtcactgtcaagc #### 2410127L17Rik_ID4448_3 --> 0 - 2 Original Alignment GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGAtg gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGAtggtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta Alignment from CESAR GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGAtg gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGAtggtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta Alignment from Spaln_aa2Genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta Alignment from Spaln_nt2Genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta Alignment from Pairagon GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta Alignment from Exonerate_protein2genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta Alignment from Exonerate_coding2genome GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta Alignment from GeneWise GCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAAAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAGGAGAGATG gacaaaattgggctccaagaagataagtttatgggtacttctgccatcagGCCAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCTACACTGAAACAGTTTGTAAGAGACTGGAGTGAGACCGGGAAAGCAGAGAGGGACGCCTGCTATAAGCCAATCATTAAAGAGATTATCAAAAATTTTCCAAAAGAGAGATGgtaagaattaccatattgtcgcccactctctgtgccgggtatgtcagtta #### 2700081O15Rik_ID2153_3 --> 2 - 1 Original Alignment gcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAg ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcaggcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAggtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg Alignment from CESAR gcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAg ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcaggcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAggtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg Alignment from Spaln_aa2Genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAGgtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg Alignment from Spaln_nt2Genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAGgtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg Alignment from Pairagon GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAGgtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg Alignment from Exonerate_protein2genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAGgtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg Alignment from Exonerate_coding2genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAGgtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg Alignment from GeneWise GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggacccccaagaggggtggagagtcagtatctctcgttcctgtttctcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGTTCAGTGGCACCTCGGCGTCGGCGCCTTGCAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGCTTGGAGCGGAGGTTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGTGGCCGGGCGCTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGGAGTGCCCTGCTGCAGGCCTGGGGTGATCAGCCTGAGGCTCTGTCTGAGCTGACTCAACCTTCACCAGgtgaggggctgctgcatttccaactgaggtaccaggttcatttaactggg #### 2700081O15Rik_ID2154_4 --> 2 - 1 Original Alignment acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagatGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGggtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag Alignment from CESAR acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagatGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGggtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag Alignment from Spaln_aa2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagATGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGGgtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag Alignment from Spaln_nt2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagATGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGGgtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag Alignment from Pairagon ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagATGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGGgtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag Alignment from Exonerate_protein2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagATGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGGgtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag Alignment from Exonerate_coding2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagATGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGGgtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag Alignment from GeneWise ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG acatcagaggctgtgctttactgctttagcgcacatggtctctctttcagATGATGACCTTGTCCCCCAGGACCTGACCAGAAATAGCCGGGACTCTGCCCCTGCGGCTGGAGCCCCCTCCACACAGGATCTCAGTCCCCCAGATGTAAAGGGAGAGGTGGGTTGGGTGTCTGAGAGGCCTGGCCCAGCAGAGGAGGAGGAGGGTGAGGGTGAGGGTGAGAGGGAGGGCATTCCAAAC---CCTCGAAGGGGCCGTGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAATTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGAGGGGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGTGGGCCAGTCAAGGCTCTTATTGCTCAGGAGTGGAGCGAAAAGGCCACATACCTTCTGGCCCTGGGGCTTTCCAGGCCAGAGTCGCCAAGTGTCCCTGTTGCCCCCAGCACAGCCTCAGCCTCTGAAGAGGGAGGAGGGGCAGATGATGCAGAGCCAGAGGAAGAGTGGTGGGgtgagtctgttcatgggctggagcaactggtgggcaagaaagggtaagag #### 4430402I18Rik_ID6182_8 --> 2 - 0 Original Alignment caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctcaactacatggaaactgaacaattatgttaattaattttacagcaCCTTCACTTGACAGCCTTGAGGCAAACATAAAGgtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca Alignment from CESAR caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctcaactacatggaaactgaacaattatgttaattaattttacagcaCCTTCACTTGACAGCCTTGAGGCAAACATAAAGgtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca Alignment from Spaln_aa2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctcaactacatggaaactgaacaattatgttaattaattttacagCACCTTCACTTGACAGCCTTGAGGCAAACATAAAGgtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca Alignment from Spaln_nt2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctcaactacatggaaactgaacaattatgttaattaattttacagCACCTTCACTTGACAGCCTTGAGGCAAACATAAAGgtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca Alignment from Pairagon CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctcaactacatggaaactgaacaattatgttaattaattttacagCACCTTCACTTGACAGCCTTGAGGCAAACATAAAGgtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca Alignment from Exonerate_protein2genome aactgctcaactacatggaaactgaacaattatgttaattaattttacagcaccttcacttgacagccttgaggcaaacataaaggtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca Alignment from Exonerate_coding2genome aactgctcaactacatggaaactgaacaattatgttaattaattttacagcaccttcacttgacagccttgaggcaaacataaaggtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca Alignment from GeneWise --TCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctcaactacatggaaactgaacaattatgttaattaattttacagCACCTTCACTTGACAGCCTTGAGGCAAACATAAAGgtacttacctaagcagcatctgtggttagcttagtcacagcatctcacca #### 4430402I18Rik_ID6183_7 --> 0 - 1 Original Alignment GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAG---AAAAGAg taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccagGTCGATAGTGGGAATCCCTTTGGTGAGAACAATCTGGAGCACTGT------------------------GACTTAATAAACTTTGATCTTTTGAAGAGTCAAAGAggtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct Alignment from CESAR GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAG---AAAAGAg taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccagGTCGATAGTGGGAATCCCTTTGGTGAGAACAATCTGGAGCACTGT------------------------GACTTAATAAACTTTGATCTTTTGAAGAGTCAAAGAggtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct Alignment from Spaln_aa2Genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAG---AAAAGAG taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccagGTCGATAGTGGGAATCCCTTTGGTGAGAACAATCTGGAGCACTGTGAC------------------------TTAATAAACTTTGATCTTTTGAAGAGTCAAAGAGgtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct Alignment from Spaln_nt2Genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGA---AAAGAG taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccagGTCGATAGTGGGAATCCCTTTGGTGAGAACAATCTGGAGCACTG------------------------TGACTTAATAAACTTTGATCTTTTGAAGAGTCAAAGAGgtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct Alignment from Pairagon GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGA---AAAGAG taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccagGTCGATAGTGGGAATCCCTTTGGTGAGAACAATCTGGAGCACTG------------------------TGACTTAATAAACTTTGATCTTTTGAAGAGTCAAAGAGgtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct Alignment from Exonerate_protein2genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACT taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccagGTCGATAGTGGGAATCCCTTTGGTGAGAACAATCTGGAGCACTGTGACTTAATAAACTTTGATCTTTTGAAGAGTCAAAGAGgtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct Alignment from Exonerate_coding2genome taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccaggtcgatagtgggaatccctttggtgagaacaatctggagcactgtgacttaataaactttgatcttttgaagagtcaaagaggtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct Alignment from GeneWise GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAGCA- taagacagtgatccatgaaaccacaggacgagtccttctcttctgtccagGTCGATAGTGGGAATCCCTTTGGTGAGAACAATCTGGAGCACTGTGAC------------------------TTAATAAACTTTGATCTTTTGAAGAGTCAAAGAGgtgaggacatttctttccctctgggtagttcccctcggaagctgcgggct #### 4930506M07Rik_ID12870_7 --> 0 - 1 Original Alignment GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAg gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAggtgagtatctgcagcctctctgctttttgcaggattttggctacctatat Alignment from CESAR GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAg gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAggtgagtatctgcagcctctctgctttttgcaggattttggctacctatat Alignment from Spaln_aa2Genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagtatctgcagcctctctgctttttgcaggattttggctacctatat Alignment from Spaln_nt2Genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagtatctgcagcctctctgctttttgcaggattttggctacctatat Alignment from Pairagon GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagtatctgcagcctctctgctttttgcaggattttggctacctatat Alignment from Exonerate_protein2genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagtatctgcagcctctctgctttttgcaggattttggctacctatat Alignment from Exonerate_coding2genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagtatctgcagcctctctgctttttgcaggattttggctacctatat Alignment from GeneWise GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gccatggcccccctccctctcagtccaattactggcgttctttattgcagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagtatctgcagcctctctgctttttgcaggattttggctacctatat #### 9130011E15Rik_ID9625_23 --> 1 - 0 Original Alignment aGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagaGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc Alignment from CESAR aGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagaGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc Alignment from Spaln_aa2Genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc Alignment from Spaln_nt2Genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc Alignment from Pairagon AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc Alignment from Exonerate_protein2genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc Alignment from Exonerate_coding2genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc Alignment from GeneWise AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG acactggatttcatttgggactatagtgccatttttattttaacttttagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCTGCTGTGAATCACATATCCCAACTATCAGAGGAACAGgtaagccattgctctgcccagaataaccccactggtgggatagattagtc #### 9130011E15Rik_ID9641_20 --> 2 - 0 Original Alignment ccTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagccTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca Alignment from CESAR ccTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagccTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca Alignment from Spaln_aa2Genome CCTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagCCTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca Alignment from Spaln_nt2Genome CCTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagCCTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca Alignment from Pairagon CCTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagCCTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca Alignment from Exonerate_protein2genome CCTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagCCTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca Alignment from Exonerate_coding2genome CCTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagCCTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca Alignment from GeneWise CCTTGATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCCAAGCACAACATTTTTACATTGGCCCTTATG aatgctgatttctgtttaaatgctatgcactcctgtcttctttgaaacagCCTTAATAAACTTGCTGAAGTTCCTTATGTCAAATGAAACTGTACTTTTGGCTAAGCACAACATTTTTACATTGGCCCTTATGgtatgaattaataaaagtatttgttatttgaaggctagcactcaaagaca #### 9130011E15Rik_ID9650_19 --> 1 - 1 Original Alignment gCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAg ggttaactgtgatggattctgtagcttccaaagcttgtcttattttataggCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAggtatggatagagtggccctggggcgctgaaggacttaacggaattacttt Alignment from CESAR gCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAg ggttaactgtgatggattctgtagcttccaaagcttgtcttattttataggCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAggtatggatagagtggccctggggcgctgaaggacttaacggaattacttt Alignment from Spaln_aa2Genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG ggttaactgtgatggattctgtagcttccaaagcttgtcttattttatagGCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAGgtatggatagagtggccctggggcgctgaaggacttaacggaattacttt Alignment from Spaln_nt2Genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG ggttaactgtgatggattctgtagcttccaaagcttgtcttattttatagGCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAGgtatggatagagtggccctggggcgctgaaggacttaacggaattacttt Alignment from Pairagon GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG ggttaactgtgatggattctgtagcttccaaagcttgtcttattttatagGCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAGgtatggatagagtggccctggggcgctgaaggacttaacggaattacttt Alignment from Exonerate_protein2genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG ggttaactgtgatggattctgtagcttccaaagcttgtcttattttatagGCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAGgtatggatagagtggccctggggcgctgaaggacttaacggaattacttt Alignment from Exonerate_coding2genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG ggttaactgtgatggattctgtagcttccaaagcttgtcttattttatagGCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAGgtatggatagagtggccctggggcgctgaaggacttaacggaattacttt Alignment from GeneWise GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG ggttaactgtgatggattctgtagcttccaaagcttgtcttattttatagGCGGTGTGTCCAGGTAGTGCATAAATTGCTCTGTTACCAGAGGAAATGTAGAGTTCGCCTGCATTATGCCTGGTGTGAACTTTGGTCAGgtatggatagagtggccctggggcgctgaaggacttaacggaattacttt #### 9130011E15Rik_ID9666_11 --> 0 - 2 Original Alignment GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTAcagtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga Alignment from CESAR GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTAcagtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga Alignment from Spaln_aa2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga Alignment from Spaln_nt2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga Alignment from Pairagon GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga Alignment from Exonerate_protein2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga Alignment from Exonerate_coding2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga Alignment from GeneWise GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggagctgtcctcttggataatgcctgtccctaccatcccctcctccagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggcttcattgtgtgttctccagcttaatgtgaaagcaga #### 9130011E15Rik_ID9676_5 --> 0 - 0 Original Alignment AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag Alignment from CESAR AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag Alignment from Spaln_aa2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag Alignment from Spaln_nt2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag Alignment from Pairagon AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag Alignment from Exonerate_protein2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag Alignment from Exonerate_coding2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag Alignment from GeneWise AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttcttgatttgctctagagagcaccctctgtgtcccctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACTgtttgtgtccttgtgagtttagaaagggtaatcatcactgctaaatcaag #### A1cf_ID6643_5 --> 2 - 1 Original Alignment gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccaggaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAggtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag Alignment from CESAR gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccaggaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAggtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag Alignment from Spaln_aa2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAGgtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag Alignment from Spaln_nt2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAGgtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag Alignment from Pairagon GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAGgtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag Alignment from Exonerate_protein2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAGgtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag Alignment from Exonerate_coding2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAGgtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag Alignment from GeneWise GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG ttcatcactcagaaccataacagtcaatttctgaacttcatgtccgccagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAGCCAGAAGTTGAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTATACATAAGGAACCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAGgtgagtcaaacatgaaatcaattcctaattggccgtcagcctctctacag #### A1cf_ID6649_9 --> 0 - 2 Original Alignment ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAat ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCatgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag Alignment from CESAR ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAat ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCatgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag Alignment from Spaln_aa2Genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCATgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag Alignment from Spaln_nt2Genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCATgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag Alignment from Pairagon ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCATgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag Alignment from Exonerate_protein2genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCATgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag Alignment from Exonerate_coding2genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCATgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag Alignment from GeneWise ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ggagtgcaaatgtgatatttgaaggaggttctttatctcccaattaatagATCTTAAAGGAAATTTGTCAAAAAAATAACTGGGGACAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCACTGGCCAGCCAGAATCCTGCCATgtaagtaccttccccaagcttttcataagttgaattttaagtaaaatcag #### A630007B06Rik_ID12183_14 --> 1 - 0 Original Alignment aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttaggATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt Alignment from CESAR aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttaggATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt Alignment from Spaln_aa2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttagGATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt Alignment from Spaln_nt2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttagGATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt Alignment from Pairagon AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttagGATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt Alignment from Exonerate_protein2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttagGATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt Alignment from Exonerate_coding2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttagGATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt Alignment from GeneWise AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ccacaatgttcctaagctgtgagcacactcacaatgccttctggtcttagGATAATCCAGAGTTACATTCTCCGAGAGGAGTCAGGTACTCTATCATCAGAAGCATCAGATTTTAACAAAGTGCATTTGAGCAGACGTGGTGGCATCATGGCTTCCTTGTACACATCCCATCCTGCTGACAGTGGGTTAACTTTGGAGCTCTCGTTGGAAATCAACCGAAAATTACAGGCCGTATTGGAAGCTACATTGCTTAAGAATATTACTTTGAAGgtaacaacttctgtgtaacaatgtttaagtaaattttgtgaccttccttt #### A630007B06Rik_ID12185_12 --> 2 - 1 Original Alignment ctCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAg ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagcgCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAggtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt Alignment from CESAR ctCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAg ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagcgCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAggtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt Alignment from Spaln_aa2Genome CTCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAG ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagCGCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAGgtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt Alignment from Spaln_nt2Genome CTCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAG ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagCGCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAGgtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt Alignment from Pairagon CTCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAG ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagCGCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAGgtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt Alignment from Exonerate_protein2genome CTCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAG ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagCGCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAGgtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt Alignment from Exonerate_coding2genome CTCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAG ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagCGCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAGgtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt Alignment from GeneWise CTCGGAGAAAGTTAGAGCAGACTGAGAATGGAAACCACGATAAAGACATTAGCAGTATGGGAAGTCGCTCGAGTTCATCAG ggtcatcataactgtgatagctgattgattctgtttattttacctcgcagCGCGGAGAAAGTTAGAGCAGACAAAGAATGGAAACCACGATAAGGACACTAGCAGTATGGGAAGTCGCTCGAGCTCATCAGgtaggtggtgtagtaggagatggctatggctaggtattaaggtgattggt #### A630007B06Rik_ID12193_4 --> 0 - 0 Original Alignment GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg Alignment from CESAR GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg Alignment from Spaln_aa2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg Alignment from Spaln_nt2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg Alignment from Pairagon GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg Alignment from Exonerate_protein2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg Alignment from Exonerate_coding2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg Alignment from GeneWise GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG tttcagttgtaaatgcaatgagccttggctatcccttgccatctccccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCCCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAGCTAGAGAAAAACACTAACAAGATTAAACAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAGgtaagtcttgcatgtgtctattttgcttagtccacagttttggaagattg #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagaaTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagaaTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga #### Abcc2_ID8819_3 --> 0 - 0 Original Alignment GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc Alignment from CESAR GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc Alignment from Spaln_aa2Genome GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc Alignment from Spaln_nt2Genome GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc Alignment from Pairagon GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc Alignment from Exonerate_protein2genome GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc Alignment from Exonerate_coding2genome GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc Alignment from GeneWise GTGTTCGTTGTGTGTCTTCTTATTTTAGCAGCCATAGACCTGTCTCTTGCACTCACAGAAGATACTGGACAAGCCACAATTCCTCCTGTTAAATATACAAATCCAATTCTCTACCTATGCACTTGG ttattcccacaaggttctaggagccatccattcggttccttcttttacagGTGTTTGTTGTGTGTCTTCTGATTTTGGCAGCCATAGACTTGTATCTTGCACTCACAGAAGATACCGGACAAGCAACCATTCCTCCTGTTAAATATACTAATCCGATCCTCTACCTATGCACATGGgtaagcatgggtaagggggagaggagccaaatctcctggtgtggaaaagc #### Abcc2_ID8822_6 --> 0 - 2 Original Alignment GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACag tccaggagccccatgagtcacttccaactgaagtgttctgtctattacagGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACaggtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta Alignment from CESAR GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACag tccaggagccccatgagtcacttccaactgaagtgttctgtctattacagGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACaggtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta Alignment from Spaln_aa2Genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacttccaactgaagtgttctgtctattacagGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta Alignment from Spaln_nt2Genome ACGCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacttccaactgaagtgttctgtctattacAGGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta Alignment from Pairagon GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacttccaactgaagtgttctgtctattacagGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta Alignment from Exonerate_protein2genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacttccaactgaagtgttctgtctattacagGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta Alignment from Exonerate_coding2genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacttccaactgaagtgttctgtctattacagGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta Alignment from GeneWise GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacttccaactgaagtgttctgtctattacagGCCCCATCGGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtaagtaatgcttggatgagagtgttttcttttttaatatctatgtacta #### Abcc2_ID8823_7 --> 1 - 0 Original Alignment cACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagcACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag Alignment from CESAR cACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagcACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag Alignment from Spaln_aa2Genome CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagCACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag Alignment from Spaln_nt2Genome CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagCACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag Alignment from Pairagon CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagCACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag Alignment from Exonerate_protein2genome CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagCACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag Alignment from Exonerate_coding2genome CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagCACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag Alignment from GeneWise CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctccacctgagttccatttaaattctcctcctttttctcaaacagCACTCTTCTGAAAGGCTACAGGCATCCATTGACAATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAAGCCAGGCAGGCACTTCAGAGGCGGCTGAAAAAGTCCCAGCAGAGTCCTGGGGGCACATCACACGGATCAACAAAAAAGCAAAGTCAGAGCCAAGATGTTCTTGTACTGgtaatggcaccccaagtatctgtgtgagtgcactgtatgggtcaggtgag #### Abcc2_ID8824_8 --> 0 - 2 Original Alignment GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTCAAAAAAG---------AGATCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGgagtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg Alignment from CESAR GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTCA---------AAAAAGAGATCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGgagtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg Alignment from Spaln_aa2Genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTCA---------AAAAAGAGATCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGGAgtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg Alignment from Spaln_nt2Genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTCAAAAAAG-------AGA--TCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGGAgtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg Alignment from Pairagon GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTC---------AAAAAAGAGATCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGGAgtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg Alignment from Exonerate_protein2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTCA---------AAAAAGAGATCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGGAgtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg Alignment from Exonerate_coding2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTCA---------AAAAAGAGATCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGGAgtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg Alignment from GeneWise GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA cctgtaaatttacaggccagtggacatgaccttggcacctcctttcttagGAGGACTCAAAAAAGAGA---------TCTGAGGCCACTAAAGACTTTCCCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAATCCTGAAATCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTCCTGAATCCTCAGCTCCTGGAgtgactgcacaaaacttgcaaacttcctagtctcaaagtcgcaaaagctg #### Abcc2_ID8841_25 --> 0 - 2 Original Alignment GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACcg actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATCCCAT---CTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACcggtatctcttccttaggcactcacctagatggatatttctcaactctacat Alignment from CESAR GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACcg actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATCC---CATCTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACcggtatctcttccttaggcactcacctagatggatatttctcaactctacat Alignment from Spaln_aa2Genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATCC---CATCTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgtatctcttccttaggcactcacctagatggatatttctcaactctacat Alignment from Spaln_nt2Genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATC---CCATCTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgtatctcttccttaggcactcacctagatggatatttctcaactctacat Alignment from Pairagon GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATC---CCATCTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgtatctcttccttaggcactcacctagatggatatttctcaactctacat Alignment from Exonerate_protein2genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATCC---CATCTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgtatctcttccttaggcactcacctagatggatatttctcaactctacat Alignment from Exonerate_coding2genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATCC---CATCTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgtatctcttccttaggcactcacctagatggatatttctcaactctacat Alignment from GeneWise GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG actatgactcaggggactattactaacttttatatacttactatatctagGTCTTTTATGTGGCTACATCCCAT---CTGAGACGACTGGATTCTGTCACCAAATCTCCAATCTATTCTCACTTGAGTGAGTCTATCTCTGGTTTGCCTGTTATTCGTGCTTTTGAACACCAGCAAAGGTTTCTAGCAAACAGCGAGAAGCAGGTAGATACCAACCAGAAATGCATCTTTTCCTGGATTACCTCCAACCGgtatctcttccttaggcactcacctagatggatatttctcaactctacat #### Acsl5_ID11597_2 --> 0 - 1 Original Alignment GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTggtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg Alignment from CESAR GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTggtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg Alignment from Spaln_aa2Genome GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTGgtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg Alignment from Spaln_nt2Genome GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTGgtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg Alignment from Pairagon GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTGgtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg Alignment from Exonerate_protein2genome GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTGgtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg Alignment from Exonerate_coding2genome GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTGgtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg Alignment from GeneWise GGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG agtctcaacaggagtggagagggattccctgcctcctctgtctcctctagGGAGGAGCATGGAGGGGTGCTGTCAAGAAGAACAATGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATTTCCAGAGAGGACTTGCTGTGTCTGgtatgtcttttcacttggtctaacctaggatataacaggggtaacaggtg #### Acsl5_ID11603_8 --> 0 - 1 Original Alignment CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAggtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt Alignment from CESAR CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAggtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt Alignment from Spaln_aa2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAGgtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt Alignment from Spaln_nt2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAGgtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt Alignment from Pairagon CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAGgtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt Alignment from Exonerate_protein2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAGgtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt Alignment from Exonerate_coding2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAGgtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt Alignment from GeneWise CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tagaccctctgtggttcactgtaggctactagctcatttccttttcacagCCTCCAAAGCCAGAGGATCTCAGTGTGATTTGTTTCACCAGTGGAACTACAGgtaagtgctccgaagtcccacagagccacagaaaaggctaagccatgagt #### Acsl5_ID11604_9 --> 2 - 0 Original Alignment gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccaggtGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa Alignment from CESAR gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccaggtGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa Alignment from Spaln_aa2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccagGTGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa Alignment from Spaln_nt2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccagGTGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa Alignment from Pairagon GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccagGTGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa Alignment from Exonerate_protein2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccagGTGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa Alignment from Exonerate_coding2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccagGTGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa Alignment from GeneWise GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG tccagcaagccacactgttgttctttctagtaacttgctgtgttccccagGTGATCCTGAAGGAGCTATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTCCTAAAATTTTTGGAGgtgagtagtatttgccataatttgacttgactataggattttcaggagaa #### Acsl5_ID11606_11 --> 0 - 0 Original Alignment GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact Alignment from CESAR GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact Alignment from Spaln_aa2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact Alignment from Spaln_nt2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact Alignment from Pairagon GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact Alignment from Exonerate_protein2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact Alignment from Exonerate_coding2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact Alignment from GeneWise GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtcttcagggatccaggacactgagcgaccctgcaccctttttcatagGCTGTCTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGGGATATCCGGTTGCTTCCTGATGATATGAAGGCTTTGAAACCTACAGTGTATCCAGCAGTGCCTCAACTCCTAAACAGGGTCTATGATAAGgtaagcaacttgcttctgcttgccattatctggaaagacttggagggact #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttaggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttaggtCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG ttagaaatgtgcttgctctagggttgccctccatctcttggcctgtttagGTCATGTTGGTACTCCAGTAGCTTGCAATTTTGTAAAGCTTGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggtgtaatacagcacataggtaatggggatggagaaacttacc #### Acsl5_ID11611_16 --> 0 - 0 Original Alignment ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag Alignment from CESAR ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag Alignment from Spaln_aa2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag Alignment from Spaln_nt2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag Alignment from Pairagon ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag Alignment from Exonerate_protein2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag Alignment from Exonerate_coding2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag Alignment from GeneWise ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gttttataggtgatgtgatctatatattgttttccttctatcctctgcagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACCCAGAGAAAACACAAGAAGTACTAGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtaagtaattctccataatttgcaaggctttctgtcatgggactgaggag #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttaggcccctttgccatcacacttggttcccaacccttcctccgcagTGTGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGTGGCTTGAAATCTCTTGAGCAGgtaaatatttgggatgccattctggttcctcaaggtccggctaggatttt #### Acta2_ID6908_6 --> 2 - 1 Original Alignment ccGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTg gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagccAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTggtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa Alignment from CESAR ccGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTg gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagccAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTggtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa Alignment from Spaln_aa2Genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagCCAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTGgtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa Alignment from Spaln_nt2Genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagCCAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTGgtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa Alignment from Pairagon CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagCCAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTGgtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa Alignment from Exonerate_protein2genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagCCAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTGgtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa Alignment from Exonerate_coding2genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagCCAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTGgtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa Alignment from GeneWise CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gacacttgtgttagcactcatgtctaccttaaccctgctcttgctttcagCCAAGCGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTGCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTTTTCCAGCCATCTTTCATTGgtaaggaattaagggtgatgttatcttgttctgtaccaagaacaagccaa #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from CESAR AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aggaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_aa2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Pairagon AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_protein2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_coding2genome AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gcttagagtagcgggttaagagagcttacacagttttgtttgggttacagGAAGTAGGACGGCTGGCAGCGGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcaccctcgggaaaaagggaagggaagaggaagtgctgactt #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg #### Actn3_ID698_12 --> 2 - 2 Original Alignment gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcaggcAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCaagtactaatggccagaggctatgcatcatccctgcctcattatgccctggc Alignment from CESAR gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcaggcAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCaagtactaatggccagaggctatgcatcatccctgcctcattatgccctggc Alignment from Spaln_aa2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcagGCAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtactaatggccagaggctatgcatcatccctgcctcattatgccctggc Alignment from Spaln_nt2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcagGCAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtactaatggccagaggctatgcatcatccctgcctcattatgccctggc Alignment from Pairagon GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcagGCAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtactaatggccagaggctatgcatcatccctgcctcattatgccctggc Alignment from Exonerate_protein2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcagGCAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtactaatggccagaggctatgcatcatccctgcctcattatgccctggc Alignment from Exonerate_coding2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcagGCAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtactaatggccagaggctatgcatcatccctgcctcattatgccctggc Alignment from GeneWise GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactctggctatgactgcctatgggatcgcttgtgctgtcctttcagGCAAAGAGGAAACATTAAACCAGCATGACTACGAGTCAGCCTCACTGCAGGAGGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCGCACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtactaatggccagaggctatgcatcatccctgcctcattatgccctggc #### Actn3_ID699_11 --> 0 - 1 Original Alignment GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAggtcagaagaatacatgggccaagatgcataggacttggatagatgtactg Alignment from CESAR GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAggtcagaagaatacatgggccaagatgcataggacttggatagatgtactg Alignment from Spaln_aa2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAGgtcagaagaatacatgggccaagatgcataggacttggatagatgtactg Alignment from Spaln_nt2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAGgtcagaagaatacatgggccaagatgcataggacttggatagatgtactg Alignment from Pairagon GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAGgtcagaagaatacatgggccaagatgcataggacttggatagatgtactg Alignment from Exonerate_protein2genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAGgtcagaagaatacatgggccaagatgcataggacttggatagatgtactg Alignment from Exonerate_coding2genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAGgtcagaagaatacatgggccaagatgcataggacttggatagatgtactg Alignment from GeneWise GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG tctacataagggtgaatcataatggagtcggtccctctgcccacccccagGACATAGCCAATGCATGGCGGGGACTAGAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAGTTCCAACAAAAGGCTTCCCTGCATGAAGCTTGGACTCGAGgtcagaagaatacatgggccaagatgcataggacttggatagatgtactg #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttccactcatgacctttgaccttactccttgcccctctcccccaggtGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttccactcatgacctttgaccttactccttgcccctctcccccaggtGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttccactcatgacctttgaccttactccttgcccctctcccccagGTGCAAGGCTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAACGCCCTAGACTTCATCGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtgaggagggggacaagagacatagacagtggagaggcaagatgttactt #### Actr1a_ID9875_5 --> 0 - 2 Original Alignment CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCct aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCctgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc Alignment from CESAR CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCct aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCctgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc Alignment from Spaln_aa2Genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc Alignment from Spaln_nt2Genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc Alignment from Pairagon CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc Alignment from Exonerate_protein2genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc Alignment from Exonerate_coding2genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc Alignment from GeneWise CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccccagtgctagcctagcattgcctagttggcatttgctcctgagtagCATCCCGTTCTCCTAACAGAGGCACCTTTAAATCCCCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctaggctaggttggccttacattggcctaagcctccacc #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT tgcaccctaggaccttctttcacaatttgagcatccattttcatcctcagCAGAGCCTCCTGACTATGGAGGAAATTCAGTCTGTCGAAGGGACACAGATCAAGGAACACAAGTGTCTACTACTTAAGATCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtaagagagagtgaggagtgagcttagggtattggtggagggtaggtgct #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagaCACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagaCACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ccttgcccatcagtctagctccccatcctctcttctgctgttgcgcacagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGAGATTGACCGCATGACACTTACTATGgtgagcctaacagtgtcactaagacctatgtgatgccagaagcatacatc #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg cactccaaccacaaccttcttcctctttaccctcacctctaatcccctaggGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtaagttggcatatggggaatccatataggaagtgggggggagagccctg Alignment from CESAR gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg cactccaaccacaaccttcttcctctttaccctcacctctaatcccctaggGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtaagttggcatatggggaatccatataggaagtgggggggagagccctg Alignment from Spaln_aa2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cactccaaccacaaccttcttcctctttaccctcacctctaatcccctagGGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtaagttggcatatggggaatccatataggaagtgggggggagagccctg Alignment from Spaln_nt2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cactccaaccacaaccttcttcctctttaccctcacctctaatcccctagGGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtaagttggcatatggggaatccatataggaagtgggggggagagccctg Alignment from Pairagon GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cactccaaccacaaccttcttcctctttaccctcacctctaatcccctagGGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtaagttggcatatggggaatccatataggaagtgggggggagagccctg Alignment from Exonerate_protein2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cactccaaccacaaccttcttcctctttaccctcacctctaatcccctagGGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtaagttggcatatggggaatccatataggaagtgggggggagagccctg Alignment from Exonerate_coding2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cactccaaccacaaccttcttcctctttaccctcacctctaatcccctagGGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtaagttggcatatggggaatccatataggaagtgggggggagagccctg Alignment from GeneWise GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG cactccaaccacaaccttcttcctctttaccctcacctctaatcccctagGGGCACACATGGGTACATGGCCCCCAAAGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtaagttggcatatggggaatccatataggaagtgggggggagagccctg #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaactgcccaggtattcactccaaccacaaccttcttcctcttttctct Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaactgcccaggtattcactccaaccacaaccttcttcctctttaccct Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctcttttctct Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctcttttctct Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctcttttctct Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctcttttctct Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctcttttctct Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT cccctccacagacagtcatcatgatgacgccatttctcaaactctgacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCCGACTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaactgcccaggtattcactccaaccacaaccttcttcctcttttctct #### Afap1l2_ID12250_13 --> 0 - 2 Original Alignment GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCtt gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCttgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt Alignment from CESAR GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCtt gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCttgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt Alignment from Spaln_aa2Genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCTTgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt Alignment from Spaln_nt2Genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTGG---ATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCTTgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt Alignment from Pairagon GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTA---TGTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCTTgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt Alignment from Exonerate_protein2genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCTTgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt Alignment from Exonerate_coding2genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCTTgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt Alignment from GeneWise GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTG---GATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT gatagcatgccttcttcctcattcagcccactttgacattcttctgaaagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCGGAGTCAGGCTCTAAAACTGACCCAGAAGAGCTCACCTATGACTATGTTGTTGATGCTAAAAGGGTTTCCTGCATAGTCAGTGCTGCCAAAACCTCTCTCTTgtaaccacaataaggcctggccttgtgtgccttttgacccagcttggctt #### Afap1l2_ID12255_8 --> 0 - 0 Original Alignment TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc Alignment from CESAR TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc Alignment from Spaln_aa2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc Alignment from Spaln_nt2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc Alignment from Pairagon TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc Alignment from Exonerate_protein2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc Alignment from Exonerate_coding2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc Alignment from GeneWise TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagattttatgattatactgttttcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACCTGCGGGGCAGCAGCATCGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGTGCTTGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtgagcgggaaggacctcaccaccttctccagtgctcaaaggaagggccc #### Afap1l2_ID12257_6 --> 0 - 1 Original Alignment ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATg ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATggtatcaccaagagacaggcccagagggtctaactggtatagccctcagac Alignment from CESAR ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATg ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATggtatcaccaagagacaggcccagagggtctaactggtatagccctcagac Alignment from Spaln_aa2Genome ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATG ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATGgtatcaccaagagacaggcccagagggtctaactggtatagccctcagac Alignment from Spaln_nt2Genome ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATG ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATGgtatcaccaagagacaggcccagagggtctaactggtatagccctcagac Alignment from Pairagon ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATG ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATGgtatcaccaagagacaggcccagagggtctaactggtatagccctcagac Alignment from Exonerate_protein2genome ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATG ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATGgtatcaccaagagacaggcccagagggtctaactggtatagccctcagac Alignment from Exonerate_coding2genome ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATG ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATGgtatcaccaagagacaggcccagagggtctaactggtatagccctcagac Alignment from GeneWise ATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATG ctattcccagtatgtcatctctgagagtttctgtttcgtctcacttctagATTCCGGAGAGGAGACAGCCTACTGTTCCAAAAATTGAGTCCCCTGGGGGCTACTATGAAGAGGCAGAGCCATTTGACAGATCCATCAATGgtatcaccaagagacaggcccagagggtctaactggtatagccctcagac #### Afap1l2_ID12260_4 --> 2 - 1 Original Alignment gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccaggtTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAggtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc Alignment from CESAR gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccaggtTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAggtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc Alignment from Spaln_aa2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc Alignment from Spaln_nt2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc Alignment from Pairagon GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc Alignment from Exonerate_protein2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc Alignment from Exonerate_coding2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc Alignment from GeneWise GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG ggcacagtaaatcatatgagtagacaacgggtacgacctgttttctccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgtaagcggcccttcatgctgccaggctgcctgtctttggacgaatgagtc #### Aldh18a1_ID7968_15 --> 0 - 1 Original Alignment GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACg ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACagtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc Alignment from CESAR GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACg ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACagtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc Alignment from Spaln_aa2Genome GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACG ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACAgtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc Alignment from Spaln_nt2Genome GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACG ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACAgtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc Alignment from Pairagon GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACG ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACAgtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc Alignment from Exonerate_protein2genome GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACG ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACAgtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc Alignment from Exonerate_coding2genome GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACG ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACAgtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc Alignment from GeneWise GTAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATAAGTACGGCAGCTCTCACACAGATGTCATCGTCACAGAGAACG ctttattgactcattcttgggggttatgtgtttttgtctgtttcccctagGTAAAAGTTCATACAGGCCCCAAGTTTGCCTCCTACCTGACCCTCCGTCCCTTAGATGTAAAGTCACTCCGGACAGAGTTTGGGGATCTGGAAGTGTGCATTGAAGTAGTGGACAGCATTCAAGAAGCCATTGATCACATCCATAAGTATGGGAGCTCTCACACAGAAGTCATCATCACAGAGAACAgtacgattgcagtaattcaggcatgtggtctacaggttcttggctctggc #### Aldh18a1_ID7971_12 --> 0 - 0 Original Alignment GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt Alignment from CESAR GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt Alignment from Spaln_aa2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt Alignment from Spaln_nt2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt Alignment from Pairagon GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt Alignment from Exonerate_protein2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt Alignment from Exonerate_coding2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt Alignment from GeneWise GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgacccagatgttggtcaagatattaccccaaactgaactttctctccagGTGGCAGCCTTGGCCATTGCCAGTGGCAATGGCTTGTTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATACAGCTGgtatgtggcctgccaattctacccagtgttgaaatttgcatcaaatattt #### Aldh18a1_ID7974_9 --> 2 - 0 Original Alignment gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtataggtCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat Alignment from CESAR gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtataggtCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat Alignment from Spaln_aa2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtatagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat Alignment from Spaln_nt2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtatagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat Alignment from Pairagon GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtatagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat Alignment from Exonerate_protein2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtatagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat Alignment from Exonerate_coding2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtatagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat Alignment from GeneWise GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG tcaattgaatgctcggggaacgggagtcttgtttttcttcttttgtatagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTCGATCTGGGGGGAGAATGATAGCCACCTTGGAGCCTGAACAGgtaagcacatccattgcagctcggacttttcaaagcaaagtgtgctgtat #### Aldh18a1_ID7975_8 --> 0 - 1 Original Alignment GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTg aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTggtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg Alignment from CESAR GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTg aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTggtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg Alignment from Spaln_aa2Genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTGgtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg Alignment from Spaln_nt2Genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTGgtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg Alignment from Pairagon GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTGgtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg Alignment from Exonerate_protein2genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTGgtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg Alignment from Exonerate_coding2genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTGgtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg Alignment from GeneWise GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG aagagttgtctaggggtggctctcattccactgcgttccttctcggtcagGTGAAAGCTGCTCTCTGGGCTTTGCAGGGTGGGACTTCTGTTGTCATTGCCAATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTAGAGGGAAAGAAAGTTGGCACCTTCTTTCCAGAGGTGAAACCTGCTGgtaagtcacatccctcagggtccagacccagtgccatccctcccagcctg #### Aldh18a1_ID7978_5 --> 0 - 0 Original Alignment ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga Alignment from CESAR ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga Alignment from Spaln_aa2Genome ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga Alignment from Spaln_nt2Genome ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga Alignment from Pairagon ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga Alignment from Exonerate_protein2genome ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga Alignment from Exonerate_coding2genome ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga Alignment from GeneWise ATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGGGGGTAAAT ggaagtttctcatttactcctcaggtgcaccatctttatgtttgttgtagATCTTGGTGACCAACCTGGATTTCCACGATGAGCAGAAGCGTCGAAACCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATTGTCCCCATTGTCAACACAAATGATGCAGTCGTCCCTCCGGCCGAGCCCAACAGTGATATCCAGGGAGTAAATgtacggaaaatttcctgaggcccctctaaataagggattatgacctagga #### Aldh18a1_ID7979_4 --> 0 - 0 Original Alignment GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta Alignment from CESAR GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta Alignment from Spaln_aa2Genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta Alignment from Spaln_nt2Genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta Alignment from Pairagon GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta Alignment from Exonerate_protein2genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta Alignment from Exonerate_coding2genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta Alignment from GeneWise GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG gtattccttccctccttcctggcctatagcccaattatcttgtctcacagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtaagatactgaccctacctggggattggatcttgtaaggatggttctta #### Aldh18a1_ID7981_2 --> 2 - 0 Original Alignment atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagatCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg Alignment from CESAR atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagatCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg Alignment from Spaln_aa2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg Alignment from Spaln_nt2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg Alignment from Pairagon ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg Alignment from Exonerate_protein2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg Alignment from Exonerate_coding2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg Alignment from GeneWise ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgatcccatggtttttttatttttgtatgtctctttccaagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCTTGGAGCAACATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTACCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCATCTATAGTTGAACAGgtgagtgtcaggtgaaatgactgcattaagttaaactgatttctaagttg #### Aldh1a1_ID4793_6 --> 0 - 0 Original Alignment TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct Alignment from CESAR TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct Alignment from Spaln_aa2Genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct Alignment from Spaln_nt2Genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct Alignment from Pairagon TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct Alignment from Exonerate_protein2genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct Alignment from Exonerate_coding2genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct Alignment from GeneWise TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG tgtgaattgaactaatgtacaggatctgggtctctaatttcttaatgaagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATCGGCCCTGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACCTGGCATCTCTAATAAAAGAGgtctgtttcattaatttagtgcatgcaaagtctgagtccctgctttccct #### Aldh1a1_ID4796_9 --> 2 - 0 Original Alignment tgGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagtgGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc Alignment from CESAR tgGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagtgGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc Alignment from Spaln_aa2Genome TGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagTGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc Alignment from Spaln_nt2Genome TGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagTGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc Alignment from Pairagon TGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagTGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc Alignment from Exonerate_protein2genome TGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagTGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc Alignment from Exonerate_coding2genome TGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagTGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc Alignment from GeneWise TGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGGAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAG gatactgtctcaagcatactaccatatgacccatgtctgcctctttttagTGGACATTGCTGTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTTGCAGCATCCCGGATTTTTGTTGAGGAGTCAGTTTATGATGAGTTTGTGAAAAGAAGTGTTGAGCGAGCTAAGAAATATGTTCTTGGAAATCCCCTGACCCCAGGAATAATTCAGGGCCCTCAGgtaacgttatatcaaccagacaataaattccacaagaataaataatcatc #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAggtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAggtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgtagtaagtttttgtttgttttcagAGCTGCTTTGCTGTGATGTTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTG Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCA GTATCTGGACCAGAGCTGC gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAgcatctggaccaggtgtgtagtaagtttttgtttgttttcagagC---------------TGC Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGAC-----------------------------CAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAGA---TGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTAGTAAGTTTTTGTTTGTTTTCAGAGCTGCTTTGCTGTGATGTTG Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAGA---TGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTAGTAAGTTTTTGTTTGTTTTCAGAGCTGCTTTGCTGTGATGTTG Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAG---gtgtgtagtaagtttttgtttgttttcagagcTGCTTTGCTGTGATG Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAG---gtgtgtagtaagtttttgtttgttttcagagcTGCTTTGCTGTGATG Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgtagtaagtttttgtttgttttcagAGCTGCTTTGCTGTGATGTTG #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTGCCACAGCATCTGGACCAGgtaggtactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAggtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from CESAR CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTGCCACAGCATCTGGACCAGgtgtgcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAggtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Spaln_aa2Genome CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTAGGTACTATTTTTTTCTTCTTGGTCagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Spaln_nt2Genome CTGCCCCAGTATCTGGAC-----------------------------CAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTAGGTACTATTTTTTTCTTCTTGGTCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Pairagon CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTAGGTACTATTTTTTTCTTCTTGGTCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Exonerate_protein2genome CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGgtaggtactatttttttcttcttggtcagagcTGCTTTGCTGTGATGTTGGGAGGACCTGATGAG---ACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Exonerate_coding2genome CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGCCACAGCATCTGGACCAGgtaggtactatttttttcttcttggtcagagC--TGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from GeneWise CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG CTGCCACAGCATCTGGACCAGgtaggtactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATATCTTCTTCACAGGTGAgtcctgaggatatggtagcactgtccaggacctggggtagagcagg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatgctggcaacctttaaaaattttttttattttagagATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAggtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatgctggcaacctttaaaaattttttttattttagagATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAggtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtgagtctatagccacatatgatattcccatctggcaactttctgatatg Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAGGAAG aggggttactggggcatgctggcaacctttaaaaattttttttattttagAGATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGGTGAgtctatagccacatatgatattcccatctggcaactttctgatatg #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAggtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAggtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG cctcagtcccatgtgtgtgttttcttacttactgttgtttggtatttcagGTGTACAGTGCCACCAATGTGGAGCTGGTAACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtcagtccacttgcaactgtcttctgcccagccatcctaggatatgtgcc #### Ankrd13d_ID466_7 --> 1 - 0 Original Alignment gAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccaggAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc Alignment from CESAR gAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccaggAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc Alignment from Spaln_aa2Genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc Alignment from Spaln_nt2Genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc Alignment from Pairagon GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc Alignment from Exonerate_protein2genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc Alignment from Exonerate_coding2genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc Alignment from GeneWise GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG ctgtgtgctggagagtattggccttcacaacacctgctcctccccaccagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtgagtggggctgttggaagataaaccagtggctaagcctctttatgtcc #### Ankrd13d_ID467_6 --> 2 - 2 Original Alignment agGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGag acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagaaGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGCAG---AGG---GAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGaggttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac Alignment from CESAR agGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGag acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagaaGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGCAG------AGGGAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGaggttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac Alignment from Spaln_aa2Genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagAAGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGCAG------AGGGAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGAGgttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac Alignment from Spaln_nt2Genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagAAGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGC-----AGAG-GGAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGAGgttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac Alignment from Pairagon AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagAAGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGCAG------AGGGAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGAGgttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac Alignment from Exonerate_protein2genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagAAGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGCAG------AGGGAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGAGgttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac Alignment from Exonerate_coding2genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagAAGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGCAG------AGGGAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGAGgttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac Alignment from GeneWise AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG acaattggctgaggtgaagaccttcaaggtgtcttgctcttctttggcagAAGCAGGGGCCTTGGTGATGGAAATTGATCATGACCGCAAGGTGGTGCACACAGAGTCCCTAGCTCCAGCTCTGGATGAACCTGAAGCACTACTGGCTGCTATGCAG------AGGGAGCATGTGGCGAGTCGGCTCACATCTCCTATAGTATCTACCCACCTGGACACTTGCAATGTAGCCTTTGAGAGgttagttgtaggctgtactacgagtgggagagcagggaggtcaagcagac #### Ankrd1_ID7101_4 --> 0 - 0 Original Alignment ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc Alignment from CESAR ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc Alignment from Spaln_aa2Genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc Alignment from Spaln_nt2Genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc Alignment from Pairagon ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc Alignment from Exonerate_protein2genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc Alignment from Exonerate_coding2genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc Alignment from GeneWise ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG cttctcctcctacatctacccctgcttagtgtaatttttcttcgtttaagACTGAACCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAGTTCCTGTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtgaggagaagtcttgtgcccacctgcctggactagacttccataaaggc #### Ankrd2_ID8369_3 --> 0 - 0 Original Alignment GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGTA------ATTCAGAACCTCATTGAACTGAGGAGAAAACGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc Alignment from CESAR GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGTA------ATTCAGAACCTCATTGAACTGAGGAGAAAACGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc Alignment from Spaln_aa2Genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGTAATTCAGAACCTCATTGAACTGAGGAGAAAA------CGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc Alignment from Spaln_nt2Genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGT------AATTCAGAACCTCATTGAACTGAGGAGAAAACGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc Alignment from Pairagon GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGT------AATTCAGAACCTCATTGAACTGAGGAGAAAACGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc Alignment from Exonerate_protein2genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGTA------ATTCAGAACCTCATTGAACTGAGGAGAAAACGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc Alignment from Exonerate_coding2genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGTA------ATTCAGAACCTCATTGAACTGAGGAGAAAACGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc Alignment from GeneWise GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC cctgttggaaaagtactgtattggggtgctttctccttcaccttctgtagGGCCAAGAGCGTGTCCGCAAGACATCCCTGCACCTGCGACGTGAGATCATTGATGTA------ATTCAGAACCTCATTGAACTGAGGAGAAAACGTAGGCCGAAAAAGCGAGACGCCCTGGCTGCAGCCCAAGAATCTCCTCCTGAGCCTGAGGAGATTgtgagttccctgatttagacagatgtggctggggggatctgggaagaccc #### Ankrd2_ID8370_4 --> 0 - 0 Original Alignment ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTAT------GATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact Alignment from CESAR ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTAT------GATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact Alignment from Spaln_aa2Genome ACCGGCCCTGTGAATGAGGAG---ACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTAT------GATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact Alignment from Spaln_nt2Genome ACCGGCCCTGTGAATGAGGA---GACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTA------TGATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact Alignment from Pairagon ACCGGCCCTGTGAATGAGGA---GACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTAT------GATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact Alignment from Exonerate_protein2genome ACCGGCCCTGTGAATGAGGAG---ACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTAT------GATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact Alignment from Exonerate_coding2genome ACCGGCCCTGTGAATGAGGAG---ACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTAT------GATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact Alignment from GeneWise ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG gaagacccaaagctccattcaaactttagctcctgtcacgccccatgcagACTGGCCCTGTGAATGAGGAGATGATATTCCTGAAAGCCGCAGTAGAGGGGAAAATGAAAGTTATTGACAAGTAT------GATGGAGGTTCAGCCGACACCTGTGATGAGgtgcgctcctgcgcccattgctgctccacttgtgggcttgtttgtgaact #### Anxa1_ID4759_11 --> 0 - 0 Original Alignment GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg Alignment from CESAR GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg Alignment from Spaln_aa2Genome GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg Alignment from Spaln_nt2Genome GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg Alignment from Pairagon GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg Alignment from Exonerate_protein2genome GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg Alignment from Exonerate_coding2genome GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg Alignment from GeneWise GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgaaaggattagaaatgtgtgtcgtgaccgaacgccgatcatttccagGGCGCTGGTACTAGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagttggcaccgcatgagagtaaaatcttcatg #### Anxa1_ID4761_9 --> 2 - 1 Original Alignment tgTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCg catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagtgTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTggtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt Alignment from CESAR tgTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCg catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagtgTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTggtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt Alignment from Spaln_aa2Genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagTGTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTGgtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt Alignment from Spaln_nt2Genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagTGTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTGgtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt Alignment from Pairagon TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagTGTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTGgtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt Alignment from Exonerate_protein2genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagTGTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTGgtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt Alignment from Exonerate_coding2genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagTGTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTGgtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt Alignment from GeneWise TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG catgtgagtcagttattttgattacatgtgatggttcttcccctgcccagTGTTTCAAAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAACTGAAGGGCGATATTGAGAAGTGCCTGACAGCTGTTGgtacgcagtgatgcaggatcaatgataaataatagaaagcaaatgctttt #### Anxa1_ID4768_2 --> 0 - 1 Original Alignment CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAg atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGggttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac Alignment from CESAR CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAg atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGggttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac Alignment from Spaln_aa2Genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGGgttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac Alignment from Spaln_nt2Genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGGgttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac Alignment from Pairagon CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGGgttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac Alignment from Exonerate_protein2genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGGgttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac Alignment from Exonerate_coding2genome CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGGgttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac Alignment from GeneWise CAAGCTGTAAAATCATACAAAGGTGGTCCTGGGTCAGCAGTGAGCCCCTACCCTTCCTTCAATGTATCCTCGGATGTTGCTGCCTTGCACAAAGCTATCATGGTTAAAG atggatgacaatatactcaatatattcactttttttctctattcaagcagCAAGCTGTAAAATCATACAAAGGTGGTTCTGGATCAGCAGTGAGCCCCTACCCTTCCTTTAATGTATCCTCAGATGTTGCTGCCTTGCACAAAGCTATTATGGTTAAGGgttagggtgtttcattaatagatctcttatattgtaggttgcctgttcac #### Apba1_ID5230_3 --> 0 - 1 Original Alignment TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag Alignment from CESAR TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag Alignment from Spaln_aa2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag Alignment from Spaln_nt2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag Alignment from Pairagon TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag Alignment from Exonerate_protein2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag Alignment from Exonerate_coding2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag Alignment from GeneWise TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgaaattcatccctcctttctggccccagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtgtgaccggaagagacaaacaaaggggcatttatagatacctgtcagag #### Apba1_ID5242_11 --> 0 - 0 Original Alignment ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag Alignment from CESAR ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag Alignment from Spaln_aa2Genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag Alignment from Spaln_nt2Genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag Alignment from Pairagon ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag Alignment from Exonerate_protein2genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag Alignment from Exonerate_coding2genome ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag Alignment from GeneWise ATCTGCAGCCTCATGAGAGGGGGAATCGCTGAGAGAGGAGGCGTCCGCGTGGGACATCGGATCATCGAAATCAATGGCCAGAGTGTCGTAGCCACACCACACGAGAAGATCGTCCACATCCTCTCCAATGCTGTTGGGGAG aagcacatcagaaagcttatccatgatttcttgaccttacttcgcaacagATCTGCAGCCTCATGAGAGGGGGAATTGCTGAAAGAGGAGGCGTCCGTGTTGGACATCGGATCATTGAAATCAATGGCCAAAGTGTTGTAGCCATACCACATGAGAAGATTGTCCACATCCTCTCCAATGCTGTGGGGGAGgtaagtagagagcctgcggctaaacagggtcgaggtagctaccatgtcag #### Arhgap19_ID8262_11 --> 0 - 1 Original Alignment TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGggtacttggatgcctttcacacgttccttcttaggcctttgtgttttccac Alignment from CESAR TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGggtacttggatgcctttcacacgttccttcttaggcctttgtgttttccac Alignment from Spaln_aa2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGgtacttggatgcctttcacacgttccttcttaggcctttgtgttttccac Alignment from Spaln_nt2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGgtacttggatgcctttcacacgttccttcttaggcctttgtgttttccac Alignment from Pairagon TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAA-------GGATTCTTT gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTACTTGGATGCCTTtcacacgttccttcttaggcctttgtgttttccac Alignment from Exonerate_protein2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTacttggatgcctttcacacgttccttcttaggcctttgtgttttccac Alignment from Exonerate_coding2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTacttggatgcctttcacacgttccttcttaggcctttgtgttttccac Alignment from GeneWise TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGATTCTTT gctctgacagctgaccatgcaaaccacattcccttgtgtcctttgcctagTTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTACTTGGatgcctttcacacgttccttcttaggcctttgtgttttccac #### Arhgap19_ID8266_7 --> 0 - 0 Original Alignment GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag Alignment from CESAR GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag Alignment from Spaln_aa2Genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag Alignment from Spaln_nt2Genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag Alignment from Pairagon GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag Alignment from Exonerate_protein2genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag Alignment from Exonerate_coding2genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag Alignment from GeneWise GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG aggtgggtagaataaccactaagtctggtgtggttctcttcaccctttagGCTCCTGCTTATATTTGTGAATGTGTCAGATTATCCTATTTGGGCTCCAGAACTCAAATGATTAAGgttgaagggctgaaaactaaccactaaacaagagaaggtttgcgttaaag #### Arl2_ID1476_3 --> 1 - 0 Original Alignment aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg Alignment from CESAR aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg Alignment from Spaln_aa2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg Alignment from Spaln_nt2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg Alignment from Pairagon ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg Alignment from Exonerate_protein2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg Alignment from Exonerate_coding2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg Alignment from GeneWise ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG cattgtggggctgggtagcagagagactttccttgtgactgcatgcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTGGACAGTGCTGACCGCCAGCGCATGCAAGACTGTCAGCTAGAGTTGCAAAGCCTACTGGTTGAGGAGgtgagcccgaggcctcgacttgcagtgaggccaaaccctcaacacctatg #### Arl2_ID1477_2 --> 1 - 2 Original Alignment tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagtGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTgggtgagttagggtcactaacagccattgtggggctgggtagcagagagact Alignment from CESAR tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagtGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTgggtgagttagggtcactaacagccattgtggggctgggtagcagagagact Alignment from Spaln_aa2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagTGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTGGgtgagttagggtcactaacagccattgtggggctgggtagcagagagact Alignment from Spaln_nt2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagTGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTGGgtgagttagggtcactaacagccattgtggggctgggtagcagagagact Alignment from Pairagon TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagTGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTGGgtgagttagggtcactaacagccattgtggggctgggtagcagagagact Alignment from Exonerate_protein2genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagTGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTGGgtgagttagggtcactaacagccattgtggggctgggtagcagagagact Alignment from Exonerate_coding2genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagTGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTGGgtgagttagggtcactaacagccattgtggggctgggtagcagagagact Alignment from GeneWise TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtagtgtaatagatcctggagatcttctttcccttttggtcctccagTGGCTTGGATAATGCTACCAAAACAACCATCCTCAAGAAGTTCAATGGAGAGGATGTGGAAACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGTGGgtgagttagggtcactaacagccattgtggggctgggtagcagagagact #### Arl3_ID9954_3 --> 0 - 0 Original Alignment GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca Alignment from CESAR GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca Alignment from Spaln_aa2Genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca Alignment from Spaln_nt2Genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca Alignment from Pairagon GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca Alignment from Exonerate_protein2genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca Alignment from Exonerate_coding2genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca Alignment from GeneWise GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gagttaattggtctttttgttggagttaatacatacccatgaccgtttagGGGTTTAACATCAAAAGTGTCCAGTCACAAGGTTTTAAGCTAAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATCCTCgtaggtaatcgttgtgcactcatcattgctagcattgggcagaataggca #### Asah2_ID6659_15 --> 0 - 0 Original Alignment GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt Alignment from CESAR GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt Alignment from Spaln_aa2Genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt Alignment from Spaln_nt2Genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt Alignment from Pairagon GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt Alignment from Exonerate_protein2genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt Alignment from Exonerate_coding2genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt Alignment from GeneWise GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG atacaatttatataaaacctatatatgggtctcaacccggccttttccagGAATTTGCACTTTATGGGATGAAGGATATGACTGTTGTGATTGCAGGTCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtaacttattttttaatagatagtctttttggatctctagaaccatgttt #### Asah2_ID6660_14 --> 1 - 0 Original Alignment aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagaACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa Alignment from CESAR aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagaACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa Alignment from Spaln_aa2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagAACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa Alignment from Spaln_nt2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagAACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa Alignment from Pairagon AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagAACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa Alignment from Exonerate_protein2genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagAACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa Alignment from Exonerate_coding2genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagAACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa Alignment from GeneWise AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA gaaggagttattttataaatagtcaacacaggcgcacttcacctttacagAACCATGTCTGGACAAAAATTTCGTGAGGCAATTGAAAATgtaagataaatattaggtgcaactcctataaacttatatttgagagggaa #### Asah2_ID6663_11 --> 0 - 1 Original Alignment GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGggtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt Alignment from CESAR GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGggtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt Alignment from Spaln_aa2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGGgtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt Alignment from Spaln_nt2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGGgtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt Alignment from Pairagon GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGGgtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt Alignment from Exonerate_protein2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGGgtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt Alignment from Exonerate_coding2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGGgtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt Alignment from GeneWise GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG attaaactatgcctctttcttactattttcacccactttctgacttgcagGTGAAGACCTGTAAACCTGCCCTGGGTTACAGTTTTGCTGCAGGCACAATTGATGGAGTTTCAGGTCTCAATATTACACAGGgtagggaaaaaggttggggcatgatgagacttaaactgtggctagtgtgt #### Asah2_ID6665_9 --> 0 - 0 Original Alignment CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc Alignment from CESAR CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc Alignment from Spaln_aa2Genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc Alignment from Spaln_nt2Genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc Alignment from Pairagon CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc Alignment from Exonerate_protein2genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc Alignment from Exonerate_coding2genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc Alignment from GeneWise CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG aaagtcaccattcccctcaccaagaatcgggtttgctgttctgtgtttagCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaagactttcaaacttacatgcaagatgctgcaggaagtccattattgc #### Asah2_ID6666_8 --> 0 - 0 Original Alignment GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac Alignment from CESAR GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac Alignment from Spaln_aa2Genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac Alignment from Spaln_nt2Genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac Alignment from Pairagon GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac Alignment from Exonerate_protein2genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac Alignment from Exonerate_coding2genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac Alignment from GeneWise GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG cccaatggaagtaattgttcaaaaatgcacctacttgttggatcttgtagGGGCCATTTGTGGCAGGCTTTGTATCAGCAAATCTTGGAGATGTGTCACCTAACATTGTTGGTCCGCATTGTGTTAACACTGGTGAGTCTTGTGATAATGACAAGAGCACCTGTCCCAATGGTGGGgtaagcagaatgaaaggacatgcttcaccactgcttggtttttcatccac #### Asrgl1_ID2595_5 --> 1 - 1 Original Alignment aAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAg gagctatttatcatttttgagcccttctcttttattactgtgctttacagaATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAggtatgtcttagttatgttcccattcttgccccttatgccaccagatttat Alignment from CESAR aAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAg gagctatttatcatttttgagcccttctcttttattactgtgctttacagaATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAggtatgtcttagttatgttcccattcttgccccttatgccaccagatttat Alignment from Spaln_aa2Genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG gagctatttatcatttttgagcccttctcttttattactgtgctttacagAATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAGgtatgtcttagttatgttcccattcttgccccttatgccaccagatttat Alignment from Spaln_nt2Genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG gagctatttatcatttttgagcccttctcttttattactgtgctttacagAATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAGgtatgtcttagttatgttcccattcttgccccttatgccaccagatttat Alignment from Pairagon AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG gagctatttatcatttttgagcccttctcttttattactgtgctttacagAATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAGgtatgtcttagttatgttcccattcttgccccttatgccaccagatttat Alignment from Exonerate_protein2genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG gagctatttatcatttttgagcccttctcttttattactgtgctttacagAATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAGgtatgtcttagttatgttcccattcttgccccttatgccaccagatttat Alignment from Exonerate_coding2genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG gagctatttatcatttttgagcccttctcttttattactgtgctttacagAATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAGgtatgtcttagttatgttcccattcttgccccttatgccaccagatttat Alignment from GeneWise AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG gagctatttatcatttttgagcccttctcttttattactgtgctttacagAATCTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGTAGAGGAAACTTGGCTTATGCCACCTCTACTGGGGGAATTGTCAATAAAATGGTTGGCCGAGTTGGTGATTCACCTTGCATAGgtatgtcttagttatgttcccattcttgccccttatgccaccagatttat #### Asrgl1_ID2596_4 --> 0 - 2 Original Alignment ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaa gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaagtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc Alignment from CESAR ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaa gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaagtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc Alignment from Spaln_aa2Genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAgtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc Alignment from Spaln_nt2Genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAgtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc Alignment from Pairagon ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAgtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc Alignment from Exonerate_protein2genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAgtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc Alignment from Exonerate_coding2genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAgtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc Alignment from GeneWise ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgtgttaaaaaaaaatgcaacccgtttgttcttatcctgatatagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTGATAACTGAGAAAACCAAGAGGCACCTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAgtgagatccaaaccctgggccatgttaagggggaagagcacaactcctcc #### Atad1_ID6722_8 --> 0 - 2 Original Alignment GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGag gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAaggtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat Alignment from CESAR GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGag gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAaggtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat Alignment from Spaln_aa2Genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAAGgtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat Alignment from Spaln_nt2Genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAAGgtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat Alignment from Pairagon GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAAGgtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat Alignment from Exonerate_protein2genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAAGgtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat Alignment from Exonerate_coding2genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAAGgtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat Alignment from GeneWise GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG gtcacttaattccatacattcattataaccttccctcttctctcccacagGTGGATAGACACATAGATCTTCTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGACCTGAAAGAAATGTGTCGGGATGCTGCCCTACTATGTGTCAGAGAATATGTTAATTCTACACCAGAAGAAAGgtgagatgcaggcccaatttgatttctggtatctgtaaatgacttttgat #### Atl3_ID2160_2 --> 2 - 0 Original Alignment gtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtgtagaactttttattattttgttctttgctttttgttcttgcccttaggtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa Alignment from CESAR gtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtgtagaactttttattattttgttctttgctttttgttcttgcccttaggtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa Alignment from Spaln_aa2Genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtgtagaactttttattattttgttctttgctttttgttcttgcccttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa Alignment from Spaln_nt2Genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtgtagaactttttattattttgttctttgctttttgttcttgcccttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa Alignment from Pairagon GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtgtagaactttttattattttgttctttgctttttgttcttgcccttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa Alignment from Exonerate_protein2genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtgtagaactttttattattttgttctttgctttttgttcttgcccttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa Alignment from Exonerate_coding2genome TTCCAGTACGCAGTCACAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtgtagaactttttattattttgttctttgcTTTTTGTTCTTGCCCTTAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa Alignment from GeneWise GACCCGACATTCCAGTACGCAGTCACAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG aactttttattattttgttctt------TGCTTTTTGTTCTTGCCCTTAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCCTTAGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTCGTATCAGTGGCTAGTGCCTTTCGAAAGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagtaatacgtagttgattgcaaggtagaaagtgtaaaaagtgtgaaa #### Atl3_ID2170_10 --> 0 - 0 Original Alignment GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga Alignment from CESAR GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga Alignment from Spaln_aa2Genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga Alignment from Spaln_nt2Genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga Alignment from Pairagon GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga Alignment from Exonerate_protein2genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga Alignment from Exonerate_coding2genome GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga Alignment from GeneWise GCATATATTAAAATTTACCAAGGAGAAGATCTGCCTCACCCGAAGTCCATGCTTCAG aaaacattttacatacatttttgtaatggagaaccttctctctcttctagGCATATATTAAGATTTACCAAGGAGAAGATCTGCCCCATCCGAAGTCCATGCTGCAGgtaattaagtcttgtgtgttctaagtgacatccttatgtgctgggattga #### Atrnl1_ID12447_17 --> 2 - 1 Original Alignment taAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGc aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagtaAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCAtgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg Alignment from CESAR taAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGc aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagtaAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCAtgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg Alignment from Spaln_aa2Genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagTAAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg Alignment from Spaln_nt2Genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagTAAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg Alignment from Pairagon TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagTAAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg Alignment from Exonerate_protein2genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagTAAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg Alignment from Exonerate_coding2genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagTAAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg Alignment from GeneWise TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC aaaaagccaaagtaaccccattaaatgagacattttgattcattccacagTAAGCCCAAATCAGAACGCAAGACCATGTAAGAAGCCATACTCCCTGAGGACCTCTTGCGCCAACTGCACAAGTAGCGGCATGGAATGCATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCATgtaagtataaataggcagatcctaaagaattagtaagtagggttgaatgg #### Atrnl1_ID12460_25 --> 0 - 2 Original Alignment ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCag agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCaggtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg Alignment from CESAR ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCag agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCaggtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg Alignment from Spaln_aa2Genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCAGgtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg Alignment from Spaln_nt2Genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCAGgtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg Alignment from Pairagon ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCAGgtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg Alignment from Exonerate_protein2genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCAGgtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg Alignment from Exonerate_coding2genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCAGgtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg Alignment from GeneWise ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG agaattaaggttaagcatatcccaaattggtgtttgtttcctgttttcagATTGCATTTTCACAACACAATACGATAATGGACCTTGTGCAGTTCTTTGTTACCTTCTTCAGgtaagggtcttttgttgaatttcaacctattactcatatgtgtgtgtttg #### Atrnl1_ID12518_28 --> 0 - 1 Original Alignment GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAg ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAggtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag Alignment from CESAR GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAg ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAggtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag Alignment from Spaln_aa2Genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag Alignment from Spaln_nt2Genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag Alignment from Pairagon GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag Alignment from Exonerate_protein2genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag Alignment from Exonerate_coding2genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag Alignment from GeneWise GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG ccaggcagataatgtggcctagcaaacatagcctctttctaacccctcagGGTGCCCCTAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaagtggtgtaatccaacagtggtaagcaaactttggaatgaggggaag #### BC048609_ID1423_2 --> 0 - 1 Original Alignment TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGagtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag Alignment from CESAR TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGagtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag Alignment from Spaln_aa2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGAgtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag Alignment from Spaln_nt2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGAgtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag Alignment from Pairagon TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGAgtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag Alignment from Exonerate_protein2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGAgtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag Alignment from Exonerate_coding2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGAgtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag Alignment from GeneWise TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tgtgaggtgtcagcctcccactcctcgtctgtggggctcttttctcccagTTCTCTCAAGTAATTAGCATTGGTTGGGCTGCCATGGGGCCACTCTACCAAGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATTCTGAgtaactggggaggtgtgcaaccaggagggggagcgttgagaccctgctag #### BC049760_ID1438_3 --> 1 - 2 Original Alignment gGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGag ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccaggGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGaggtgcggtttagggactgttcagtggggcaaagtttataggacactttggg Alignment from CESAR gGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGag ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccaggGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGaggtgcggtttagggactgttcagtggggcaaagtttataggacactttggg Alignment from Spaln_aa2Genome GGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGAG ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccagGGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGAGgtgcggtttagggactgttcagtggggcaaagtttataggacactttggg Alignment from Spaln_nt2Genome GGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGAG ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccagGGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGAGgtgcggtttagggactgttcagtggggcaaagtttataggacactttggg Alignment from Pairagon GGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGAG ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccagGGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGAGgtgcggtttagggactgttcagtggggcaaagtttataggacactttggg Alignment from Exonerate_protein2genome GGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGAG ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccagGGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGAGgtgcggtttagggactgttcagtggggcaaagtttataggacactttggg Alignment from Exonerate_coding2genome GGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGAG ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccagGGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGAGgtgcggtttagggactgttcagtggggcaaagtttataggacactttggg Alignment from GeneWise GGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCTAGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGAG ggtcccaggctgggaatgcacagtccaaaatcaatgtttctttcttccagGGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCGAGACGGACCTCAGAAGAAATAGAACTTTTACAAAGGGACTGCAGGAGgtgcggtttagggactgttcagtggggcaaagtttataggacactttggg #### Bad_ID1894_2 --> 2 - 1 Original Alignment ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagctCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAggtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg Alignment from CESAR ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagctCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAggtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg Alignment from Spaln_aa2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagCTCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAGgtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg Alignment from Spaln_nt2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagCTCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAGgtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg Alignment from Pairagon CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagCTCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAGgtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg Alignment from Exonerate_protein2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagCTCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAGgtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg Alignment from Exonerate_coding2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagCTCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAGgtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg Alignment from GeneWise CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG tgatcttctgtggagatgaagccagatataatgtgtccgattttcttcagCTCAGAGCATGTTCCAAATCCCAGAGTTTGAGCCAAGTGAACAGGAAGATGCTAGTGCTACGGATAGGGGCTTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCTCAGGTCTCCTAGGAAGCAACATTCATCAGTTGGGTCGTACGGCCACCAACAGTCATCATGGAGgtgagttgcccaccaccattatctctctagctatcccatgtctgcttttg #### Bbs1_ID730_4 --> 0 - 0 Original Alignment CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg Alignment from CESAR CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg Alignment from Spaln_aa2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg Alignment from Spaln_nt2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg Alignment from Pairagon CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg Alignment from Exonerate_protein2genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg Alignment from Exonerate_coding2genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg Alignment from GeneWise CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG gcatcaggatgtagatgcagtggaaaggttgcttttttactttctacaagCTATTAGTGGGACACCTTGGTGCAGGTGGTCAGCAGCCCCACCTAAAGGTGCTTAAAGGACCCACAGTCCTGATGGAGAGTCCTCTGCCTGCTCTGCCAGCCTCAGCTGCTACTTTCCTCATGGATCAACACGAGTCCAGGACACCTGCCTTGGCACTTGCCTCAGGGCCTTGTGTCTATGTTTATAAAAACCTTAGACCCTACTTCAAGTTCAGCCTACCCCAGTTACCTCCAAACCCTTTGAAACAGGATGTTTGGAATCAAGCCAAAGAGgtatgtaacatagcaaacaaggacccagaaaaggaacttcacaaattatg #### Bbs1_ID731_3 --> 2 - 0 Original Alignment caCTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagcaCTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac Alignment from CESAR caCTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagcaCTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac Alignment from Spaln_aa2Genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac Alignment from Spaln_nt2Genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac Alignment from Pairagon CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac Alignment from Exonerate_protein2genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac Alignment from Exonerate_coding2genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac Alignment from GeneWise CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG gatgagaagagtggggtgcaccttggagtgtttctcctccctttccccagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcaggaatttgagtgcacaataggagccagagcac #### Best1_ID2630_9 --> 1 - 1 Original Alignment cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagtCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAggtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac Alignment from CESAR cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagtCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAggtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac Alignment from Spaln_aa2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagTCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac Alignment from Spaln_nt2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagTCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac Alignment from Pairagon CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagTCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac Alignment from Exonerate_protein2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagTCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac Alignment from Exonerate_coding2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagTCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac Alignment from GeneWise CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG tgcttcactcttttatttgtctacttactttgaacaagtttatcctctagTCTAAAGAAAGAAGACTTAGACCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTATAGCAGCGCCATAGGCTGTTTCCTAGGACTAGAACCGAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTTCTAAGAACCCCCTCCTTGAGGGCCAGTGTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGGGGTTGGACTTCTTAAAATGTGTTCCAAGGTTTAAGAGGAGAGGTGCCTACTGTGGCCCACAGGCACCCAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagaacacctaagaataaaagctaacacccatgacttctgagaccaac #### Best1_ID2633_6 --> 0 - 0 Original Alignment GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag Alignment from CESAR GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag Alignment from Spaln_aa2Genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag Alignment from Spaln_nt2Genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag Alignment from Pairagon GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag Alignment from Exonerate_protein2genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag Alignment from Exonerate_coding2genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag Alignment from GeneWise GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG tccctagccctttccctttttgctataagactcctttcctgttcttgtagGTGGTGGCAGTGGCATTATACAGCTTTTTCCTTGCATGCTTGATTGGAAGGCAGTTTCTGAACCCTAACAAGGATTACCCAGGCCATGAGATGGATCTAGTTGTGCCAGTCTTCAGAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGgtaagactctctgcatacttccctctcctatagggtgtatagggtgtaag #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagaATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGggtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagaATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGggtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagAATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagAATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagAATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagAATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagAATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tgggaggaagtgacagacccttagctctaatgtttccttcttgacaacagAATGGTTCTCTCAAGTGATCAGCAGCTTTTGTTTGAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATATCTTTTGTTCTGGgtaattgccccttgtagctagtcatgatcttaggcctcaccctagcccct #### Blnk_ID8056_15 --> 0 - 0 Original Alignment GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta Alignment from CESAR GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta Alignment from Spaln_aa2Genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta Alignment from Spaln_nt2Genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta Alignment from Pairagon GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta Alignment from Exonerate_protein2genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta Alignment from Exonerate_coding2genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta Alignment from GeneWise GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG tgtatcacaatatttctgtctcccaggatgctgcctccctgttccatcagGAGGCCAAACTTCTTGGTAAGTCCTGGTATGCTGGGGCCTGTGACCACAAGTCTGCTGAAGAGGCCTTGCACAGGTCAAACAAGgtaagtattgttatacttataccaactagtgtttgtataggttaggatta #### Blnk_ID8058_13 --> 1 - 1 Original Alignment aCCTGTCCATCAAAAGCCTGTACCCTTGCCAa ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttaggCCAGTCCATCAGGAGCCTGTTCCCCTGTCAagtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac Alignment from CESAR aCCTGTCCATCAAAAGCCTGTACCCTTGCCAa ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttaggCCAGTCCATCAGGAGCCTGTTCCCCTGTCAagtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac Alignment from Spaln_aa2Genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttagGCCAGTCCATCAGGAGCCTGTTCCCCTGTCAAgtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac Alignment from Spaln_nt2Genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttagGCCAGTCCATCAGGAGCCTGTTCCCCTGTCAAgtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac Alignment from Pairagon ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttagGCCAGTCCATCAGGAGCCTGTTCCCCTGTCAAgtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac Alignment from Exonerate_protein2genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttagGCCAGTCCATCAGGAGCCTGTTCCCCTGTCAAgtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac Alignment from Exonerate_coding2genome ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttaggccagtccatcaggagcctgttcccctgtcaagtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac Alignment from GeneWise ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ttctgtattgtgctgatcttatgatgtggcatcatcctttttgtttttagGCCAGTCCATCAGGAGCCTGTTCCCCTGTCAAgtatgtatgacatgatgattgccaatcaaaggtgaaggttagggccagac #### Blnk_ID8064_7 --> 0 - 1 Original Alignment GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGg taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAggtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc Alignment from CESAR GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGg taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAggtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc Alignment from Spaln_aa2Genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAGgtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc Alignment from Spaln_nt2Genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAGgtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc Alignment from Pairagon GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAGgtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc Alignment from Exonerate_protein2genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAGgtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc Alignment from Exonerate_coding2genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAGgtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc Alignment from GeneWise GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG taactttggatgtatagcaaacatgctccctaacgaaatatttgttgcagGCTGATTATGTGGTCCCTGTTGAAGATAATGGTAAAAACTATATCCACCCCAGAGAAAGCAGCCCACCTCCTGCTGAAAAAGgtgaggtttggagcttgaggtgcttgaagtctccctgcttgaagtctccc #### Blnk_ID8065_6 --> 2 - 0 Original Alignment atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagatAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac Alignment from CESAR atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagatAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac Alignment from Spaln_aa2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagATAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac Alignment from Spaln_nt2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagATAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac Alignment from Pairagon ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagATAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac Alignment from Exonerate_protein2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagATAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac Alignment from Exonerate_coding2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagATAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac Alignment from GeneWise ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacataaggtaacttagagtcttaaccacccactctgttcccagATAATCGATCCAGCCAGCGACACTCGCCACCCTTCAGTAAGACACTTCCCAGTAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTGCCAGCCCCTAATTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagagcagactaggaaggtccccttactgtctcctgtcctccaaggac #### Blnk_ID8066_5 --> 0 - 1 Original Alignment GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAggtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc Alignment from CESAR GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAggtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc Alignment from Spaln_aa2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc Alignment from Spaln_nt2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc Alignment from Pairagon GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc Alignment from Exonerate_protein2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc Alignment from Exonerate_coding2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc Alignment from GeneWise GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG agtactagacagtacttgcaaggtatctttgtcaccccaccacgtcccagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtgagtcactgtggacactgagattacaggaagaggcagatcctgctgcc #### Btaf1_ID7221_4 --> 2 - 1 Original Alignment aaCCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg tgaccaggcaccaccatgcataaagatttataccttttccatctccacagaaTCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAggtgagtaggcctggagattactggaattttcatttcaaattaacttataa Alignment from CESAR aaCCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg tgaccaggcaccaccatgcataaagatttataccttttccatctccacagaaTCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAggtgagtaggcctggagattactggaattttcatttcaaattaacttataa Alignment from Spaln_aa2Genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgaccaggcaccaccatgcataaagatttataccttttccatctccacagAATCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAGgtgagtaggcctggagattactggaattttcatttcaaattaacttataa Alignment from Spaln_nt2Genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgaccaggcaccaccatgcataaagatttataccttttccatctccacagAATCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAGgtgagtaggcctggagattactggaattttcatttcaaattaacttataa Alignment from Pairagon AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgaccaggcaccaccatgcataaagatttataccttttccatctccacagAATCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAGgtgagtaggcctggagattactggaattttcatttcaaattaacttataa Alignment from Exonerate_protein2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgaccaggcaccaccatgcataaagatttataccttttccatctccacagAATCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAGgtgagtaggcctggagattactggaattttcatttcaaattaacttataa Alignment from Exonerate_coding2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgaccaggcaccaccatgcataaagatttataccttttccatctccacagAATCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAGgtgagtaggcctggagattactggaattttcatttcaaattaacttataa Alignment from GeneWise AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgaccaggcaccaccatgcataaagatttataccttttccatctccacagAATCTACAGAAAGTTCTATGGAAGATTCATCTACTACGGATCGATTGAATTTTGACAGATTCGATATATGCAGATTATTACAGCCTGCAGCATCACTTTTGGGATCCGCTGGTGCAGAATTTGAAGTCCAAGATGAGAAATCAGgtgagtaggcctggagattactggaattttcatttcaaattaacttataa #### Btaf1_ID7243_22 --> 0 - 1 Original Alignment GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTg cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTggtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga Alignment from CESAR GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTg cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTggtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga Alignment from Spaln_aa2Genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTGgtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga Alignment from Spaln_nt2Genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTGgtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga Alignment from Pairagon GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTGgtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga Alignment from Exonerate_protein2genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTGgtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga Alignment from Exonerate_coding2genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTGgtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga Alignment from GeneWise GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaaaaatataacatattatacttcccctcttgtttctcctgccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCGTTGAAGTCTATGATTGACCTAAATAATTTTGgtaagtagtctctcacttaaatccatttagtgattttgatgtgtctgtga #### Btaf1_ID7244_23 --> 2 - 0 Original Alignment atGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagatGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat Alignment from CESAR atGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagatGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat Alignment from Spaln_aa2Genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat Alignment from Spaln_nt2Genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGT---TGCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat Alignment from Pairagon ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGT---TGCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat Alignment from Exonerate_protein2genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat Alignment from Exonerate_coding2genome ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat Alignment from GeneWise ATGGAAAGTCCCTCCTGGAAAGAGGTGATGTTCCTGCTCAAGAATTGGTGAATTCCCTGCAAGTGTTTGAAATAGCAGCAGCTTCCATGGACTCTGCACTTCATCCCTTG gctccgatttagccctgaaatactaagtatatccttccttccttccacagATGGAAAGTCCCTCCTTGAGCGAGGTGATGTT---GCTCAAGAATTAGTGAATTCCTTGCAAGTGTTCAAAATAGCAGCAGCATCCATTGACTCTGCACTTCATCCCTTGgtatgtcagatgtgttgtgttttttgaaggatgacttcaacccttgagat #### Btaf1_ID7249_28 --> 1 - 2 Original Alignment gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag aaatcctgatcaatgtaaattgattactacccattccttctgccccacaggGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAaggtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat Alignment from CESAR gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag aaatcctgatcaatgtaaattgattactacccattccttctgccccacaggGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAaggtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat Alignment from Spaln_aa2Genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aaatcctgatcaatgtaaattgattactacccattccttctgccccacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAAGgtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat Alignment from Spaln_nt2Genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aaatcctgatcaatgtaaattgattactacccattccttctgccccacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAAGgtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat Alignment from Pairagon GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aaatcctgatcaatgtaaattgattactacccattccttctgccccacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAAGgtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat Alignment from Exonerate_protein2genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aaatcctgatcaatgtaaattgattactacccattccttctgccccacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAAGgtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat Alignment from Exonerate_coding2genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aaatcctgatcaatgtaaattgattactacccattccttctgccccacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAAGgtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat Alignment from GeneWise GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aaatcctgatcaatgtaaattgattactacccattccttctgccccacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCACCAACATTGACAGGTCATTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACTGGCCCTCCCACTGAAAGGATAAGgtagacggcatgctgcctaatggttcatagtccatgtctcttgcaaaaat #### Btaf1_ID7250_29 --> 1 - 2 Original Alignment gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcataggTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTaggtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt Alignment from CESAR gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcataggTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTaggtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt Alignment from Spaln_aa2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcatagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTAGgtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt Alignment from Spaln_nt2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcatagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTAGgtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt Alignment from Pairagon GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcatagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTAGgtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt Alignment from Exonerate_protein2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcatagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTAGgtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt Alignment from Exonerate_coding2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcatagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTAGgtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt Alignment from GeneWise GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG aaataaaaaaccacatcaagaagaaattctgcctcctgtttttctcatagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGACATAGACTTTTTTAGgtgagtgttgatatatagtttcaaaaacctgagtattcataggtggtatt #### Btaf1_ID7251_30 --> 1 - 0 Original Alignment aAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagaAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct Alignment from CESAR aAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagaAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct Alignment from Spaln_aa2Genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct Alignment from Spaln_nt2Genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct Alignment from Pairagon AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct Alignment from Exonerate_protein2genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct Alignment from Exonerate_coding2genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct Alignment from GeneWise AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG ttctgatacgtaggaaaaggggcataacagtgaccaccctccttccccagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGGCCAAAGCAGTAAAGCAACTGACTGCTAATTACAGGCTTATTCTTTCTGGAACACCAATCCAGgtgagggtgtaaagttccacttatttcaagacaaaaattataaacttgct #### Btaf1_ID7253_32 --> 2 - 0 Original Alignment gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcaggtGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag Alignment from CESAR gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcaggtGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag Alignment from Spaln_aa2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcagGTGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag Alignment from Spaln_nt2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcagGTGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag Alignment from Pairagon GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcagGTGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag Alignment from Exonerate_protein2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcagGTGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag Alignment from Exonerate_coding2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcagGTGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag Alignment from GeneWise GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacaagtgctcattgtttgtttgtttgtttgcagGTGTCCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTCCTTCTTAGAAGAATGAAAGAAGATGTTTTGCACGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAGgttatgaatgtgttcattgtagatgtagatataatactattggcaggaag #### Btaf1_ID7255_34 --> 0 - 0 Original Alignment GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga Alignment from CESAR GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga Alignment from Spaln_aa2Genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga Alignment from Spaln_nt2Genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga Alignment from Pairagon GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga Alignment from Exonerate_protein2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga Alignment from Exonerate_coding2genome GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga Alignment from GeneWise GCGTTACAATATTTACGTAAGCTCTGCAACCATCCAGCACTGGTCTTAACCCCTCAGCATCCAGAATTCAAGAGCACTACTGAAAAACTGACCGTTCAGAATTCTTCTCTTCATGATATTCAACACGCGCCTAAGCTCTCAGCCTTGAAACAA acacctgagctatgaaaatacacttgtatgactgtttacctctttcccagGCATTACAGTATTTACGTAAGCTATGCAACCATCCAGCATTGGTCTTAACACCACAGCACCCAGAATTCAAGAGTACCACTGAAAAACTGACAGTTCAAAATTCTTATCTTCATGACATCCAACATGCACCTAAGCTCTCAGCCCTGAAACAGgtgaggatgtctgtaaatgataaaatagtttatttgatcaaataattaga #### Btrc_ID9464_13 --> 1 - 0 Original Alignment gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccaggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg Alignment from CESAR gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccaggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg Alignment from Spaln_aa2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg Alignment from Spaln_nt2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg Alignment from Pairagon GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg Alignment from Exonerate_protein2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg Alignment from Exonerate_coding2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg Alignment from GeneWise GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cttgttgctcctttcaaccaggaaattttaaccttgctttatcatcccagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgtttatagaggtttgacaagcaggtcagcaaagtaaatg #### C030046E11Rik_ID6291_5 --> 1 - 1 Original Alignment tTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAg ccatccctctattggttggatagataatggcttgggctgcttgtttgcagtTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAggtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt Alignment from CESAR tTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAg ccatccctctattggttggatagataatggcttgggctgcttgtttgcagtTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAggtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt Alignment from Spaln_aa2Genome TTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAG ccatccctctattggttggatagataatggcttgggctgcttgtttgcagTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGgtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt Alignment from Spaln_nt2Genome TTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAG ccatccctctattggttggatagataatggcttgggctgcttgtttgcagTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGgtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt Alignment from Pairagon TTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAG ccatccctctattggttggatagataatggcttgggctgcttgtttgcagTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGgtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt Alignment from Exonerate_protein2genome TTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAG ccatccctctattggttggatagataatggcttgggctgcttgtttgcagTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGgtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt Alignment from Exonerate_coding2genome TTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAG ccatccctctattggttggatagataatggcttgggctgcttgtttgcagTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGgtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt Alignment from GeneWise TTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACTTCTGATGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAAGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAG ccatccctctattggttggatagataatggcttgggctgcttgtttgcagTTTGCAGTCTGTGCTGGAAGATCTCCTTGTTGCAACATCTGAAGGACTTCTTCATCTTATTCATTGGGAAGGAATGACAAATGGAAGAAAGGCCATCAATCTGTCTACAGTACCATTTTCAGTAGACCTCCAGTCATCCAGAGgtatgtatacatatgagacagtacagaatcattgtgcaaaagtgtcaagt #### C030046E11Rik_ID6292_6 --> 2 - 0 Original Alignment ttGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagttGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt Alignment from CESAR ttGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagttGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt Alignment from Spaln_aa2Genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagTTGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt Alignment from Spaln_nt2Genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagTTGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt Alignment from Pairagon TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagTTGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt Alignment from Exonerate_protein2genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagTTGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt Alignment from Exonerate_coding2genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagTTGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt Alignment from GeneWise TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG cctacaagacacttagtataaccctactaattctttctccttttcaatagTTGGTTCATTCCTCAGCTTTTCTGATGTGCACGTTAAGGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTGGTGTTTAATGATGGTAAAGTTGGATTTATAAGTCCAGTATCAAGTCGATTTACAGCTGAAgtgaggattgcctaacaacttgatccttttgaatatgactatttcctatt #### C030046E11Rik_ID6295_9 --> 2 - 2 Original Alignment acATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCgc accttgataatacttgtaacttatgctgcctgatggttgttctatttcagacATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTgcgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa Alignment from CESAR acATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCgc accttgataatacttgtaacttatgctgcctgatggttgttctatttcagacATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTgcgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa Alignment from Spaln_aa2Genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC accttgataatacttgtaacttatgctgcctgatggttgttctatttcagACATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTGCgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa Alignment from Spaln_nt2Genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC accttgataatacttgtaacttatgctgcctgatggttgttctatttcagACATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTGCgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa Alignment from Pairagon ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC accttgataatacttgtaacttatgctgcctgatggttgttctatttcagACATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTGCgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa Alignment from Exonerate_protein2genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC accttgataatacttgtaacttatgctgcctgatggttgttctatttcagACATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTGCgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa Alignment from Exonerate_coding2genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC accttgataatacttgtaacttatgctgcctgatggttgttctatttcagACATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTGCgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa Alignment from GeneWise ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC accttgataatacttgtaacttatgctgcctgatggttgttctatttcagACATCTGGAACAAAACAGGAGCAGTTAAGTTGATCAGATGGTCTCCGGATAACAGTGCTGTAATAGTTACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTTGCgtaagtagggacagagaaggagggggggagtgagagagggtcagaccgaa #### C030046E11Rik_ID6299_13 --> 0 - 0 Original Alignment ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc Alignment from CESAR ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc Alignment from Spaln_aa2Genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc Alignment from Spaln_nt2Genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc Alignment from Pairagon ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc Alignment from Exonerate_protein2genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc Alignment from Exonerate_coding2genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc Alignment from GeneWise ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgatatgtgggcatagttcgtctggtctcctcttttccagATCTCTAGCACTTATCTACAAAGCAATTGGCCTATACGAgtgaggatgtctcccattaatattgtgtggtcatcctggggggtgagccc #### C030046E11Rik_ID6301_15 --> 0 - 0 Original Alignment GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct Alignment from CESAR GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct Alignment from Spaln_aa2Genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct Alignment from Spaln_nt2Genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct Alignment from Pairagon GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct Alignment from Exonerate_protein2genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct Alignment from Exonerate_coding2genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct Alignment from GeneWise GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG caagttcaagcaatatgatttagataagattctgccctgctccctgccagGAGCAAAAGATGATTGTGACTGGTGGCTTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtaagatcctattctttctttgaaagaacagtcaataggccattaaatct #### C030046E11Rik_ID6304_18 --> 0 - 0 Original Alignment GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt Alignment from CESAR GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt Alignment from Spaln_aa2Genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt Alignment from Spaln_nt2Genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt Alignment from Pairagon GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt Alignment from Exonerate_protein2genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt Alignment from Exonerate_coding2genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt Alignment from GeneWise GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT ttgattttcttgtttaggaacttcttcacatctccctctgtcccctgcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtacatacagctagacagcactaagtcttaggggttacaaggacagtggt #### C030046E11Rik_ID6306_20 --> 0 - 0 Original Alignment AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt Alignment from CESAR AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt Alignment from Spaln_aa2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt Alignment from Spaln_nt2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt Alignment from Pairagon AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt Alignment from Exonerate_protein2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt Alignment from Exonerate_coding2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt Alignment from GeneWise AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG ttctcaatcttattaaatgcaatgtgatgctctcactctcccctcttcagAATATGGAAGTCCCTGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGAAAATGGGACCTGTGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtatagattatacagattttttatgcatcagcctcaaagcatcttt #### C030046E11Rik_ID6309_23 --> 2 - 1 Original Alignment tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg tatgagagcatctcatgtatccatttttatggccttctctccccttccagtaGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAggtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg Alignment from CESAR tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg tatgagagcatctcatgtatccatttttatggccttctctccccttccagtaGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAggtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg Alignment from Spaln_aa2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tatgagagcatctcatgtatccatttttatggccttctctccccttccagTAGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg Alignment from Spaln_nt2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tatgagagcatctcatgtatccatttttatggccttctctccccttccagTAGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg Alignment from Pairagon TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tatgagagcatctcatgtatccatttttatggccttctctccccttccagTAGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg Alignment from Exonerate_protein2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tatgagagcatctcatgtatccatttttatggccttctctccccttccagTAGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg Alignment from Exonerate_coding2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tatgagagcatctcatgtatccatttttatggccttctctccccttccagTAGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg Alignment from GeneWise TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tatgagagcatctcatgtatccatttttatggccttctctccccttccagTAGGTGAGCAGATGTTAAAGTCCCAGTCAGCTGACCCCTTCATCACCCCTGAGATGGATGCTGGCATCTCTAACATCCAACGAAGTCAGAGTGGGCTCAGTAACATTGGTCCCACCCATCGTGATACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAGgtgggaagctaacagttaaacaacggtagctttttttgagttttgctttg #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccaggcGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccaggcGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gtaagtcagacactaacctaagctctttagtccccatttgccatccccagGCGGTGGAAAGGTCGATTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAGCTTCGAGATGCTTTTAGGGAGgtgactcttgggtgatgagtggcagtggttggtgcaattatggttcagca #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Spaln_nt2Genome TTTGACAAGGAC---AGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Pairagon TTTGACA---AGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Exonerate_coding2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAgagtttgatggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACGAGTTTGTAATGATGCTATCTACAGGC gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCTCAATGGGGATGGGACCATAGAAGAGTTTGATGGTATGAAACCCTACATACACCTCACCcatgcctctattgccgtgaagatc #### Capn1_ID1358_18 --> 0 - 1 Original Alignment ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAg taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGCC---GAGGCTGCAggtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg Alignment from CESAR ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAg taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGCC---GAGGCTGCAggtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg Alignment from Spaln_aa2Genome ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAG taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGCC---GAGGCTGCAGgtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg Alignment from Spaln_nt2Genome ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAG taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGC---CGAGGCTGCAGgtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg Alignment from Pairagon ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAG taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGC---CGAGGCTGCAGgtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg Alignment from Exonerate_protein2genome ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAG taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGCC---GAGGCTGCAGgtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg Alignment from Exonerate_coding2genome ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAG taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGCC---GAGGCTGCAGgtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg Alignment from GeneWise ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAG taaggcctgtgcggtctggataaatgctattgtgtcctattcttttccagACAATCTTTAGGAAGTTTGACCTGGATAAGTCGGGCAGCATGAGTGCCTATGAGATGAAGATGGCC---GAGGCTGCAGgtaatccctgagtgaggctgatgcccccactgctcctgaaccccagcttg #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacacaaatgctttaggccaagtaggtgctcccgctttcctctcacagCGAGATGGAAATGGGAAGCTGGGTCTGGTGGAATTCAACATCCTATGGAACCATATCCGAAATTATCTGgtgagcggcaggatgttctctggcgtgttccctgggacctcatatggaaa #### Capn1_ID1362_14 --> 0 - 0 Original Alignment AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from CESAR AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Spaln_aa2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Spaln_nt2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Pairagon AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Exonerate_protein2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Exonerate_coding2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from GeneWise AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACaggtaattggaagttggtggattcctggagatgtggtggacaattaagaaag Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACaggtaattggaagttggtggattcctggagatgtggtggacaattaagaaag Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACAGgtaattggaagttggtggattcctggagatgtggtggacaattaagaaag Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACAGgtaattggaagttggtggattcctggagatgtggtggacaattaagaaag Alignment from Pairagon GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACAGgtaattggaagttggtggattcctggagatgtggtggacaattaagaaag Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACAGgtaattggaagttggtggattcctggagatgtggtggacaattaagaaag Alignment from Exonerate_coding2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACAGgtaattggaagttggtggattcctggagatgtggtggacaattaagaaag Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG attgaggtgggggacaaggtcatgacatctaccttttgcacttccactagGTAACCTATCAGGGCCAGCGGGTGAATCTTATCCGAATGTGGAATCCCTGGGGTGAAGTGGAGTGGAAAGGACCTTGGAGTGACAGgtaattggaagttggtggattcctggagatgtggtggacaattaagaaag #### Capn1_ID1371_5 --> 1 - 0 Original Alignment aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagaGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta Alignment from CESAR aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagaGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta Alignment from Spaln_aa2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagAGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta Alignment from Spaln_nt2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagAGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta Alignment from Pairagon AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagAGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta Alignment from Exonerate_protein2genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagAGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta Alignment from Exonerate_coding2genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagAGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta Alignment from GeneWise AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT cctgacactggtctttcttgatgatactagtgtattgtgctgtttttcagAGTGAATGGCAGCTATGAGGCTCTCTCAGGGGGCTGCACCTCAGAGGCCTTTGACGACTTTGCTGGAGGGGTCACTGAGTGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTACCAGATCATTCTAAAGGCCTTGGAACGAGGCTCCTTATTAGGCTGCTCCATAAATgtttgttgtgggcaaagttcccctgacaactttccattctgcacgtccta #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG gcacatgaggtagtggtggtgggaaaaggcttccctctcttggccctcagGTGGCAGTGAGGCTCAGTGGCTGTCGCTGGCATGGTCAACAGGCATTGCCTTTGCACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAAGAGAGTGTCCTTGTGGAGGCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgttagggcttgagctaggcacaatctgggagtagaaacaggcctctatac #### Cbwd1_ID5359_9 --> 1 - 2 Original Alignment aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagaTCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAaggtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc Alignment from CESAR aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagaTCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAaggtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc Alignment from Spaln_aa2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc Alignment from Spaln_nt2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc Alignment from Pairagon ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc Alignment from Exonerate_protein2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc Alignment from Exonerate_coding2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc Alignment from GeneWise ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG tttatagaaaccacaccttttaaacctctcactgctcttttctcctgcagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtaagttttttttgacatcctaagagcatctttgtttggctgactcatgc #### Cbwd1_ID5368_3 --> 2 - 2 Original Alignment ggAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCaa aggtcaattactatgttattctggctatccctacctctccctgtccccagggAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCaagtgacattagcatctgctctatgcctgctgaataactttggatttttgat Alignment from CESAR ggAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCaa aggtcaattactatgttattctggctatccctacctctccctgtccccagggAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCaagtgacattagcatctgctctatgcctgctgaataactttggatttttgat Alignment from Spaln_aa2Genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtcaattactatgttattctggctatccctacctctccctgtccccagGGAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtgacattagcatctgctctatgcctgctgaataactttggatttttgat Alignment from Spaln_nt2Genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtcaattactatgttattctggctatccctacctctccctgtccccagGGAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtgacattagcatctgctctatgcctgctgaataactttggatttttgat Alignment from Pairagon GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtcaattactatgttattctggctatccctacctctccctgtccccagGGAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtgacattagcatctgctctatgcctgctgaataactttggatttttgat Alignment from Exonerate_protein2genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtcaattactatgttattctggctatccctacctctccctgtccccagGGAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtgacattagcatctgctctatgcctgctgaataactttggatttttgat Alignment from Exonerate_coding2genome GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtcaattactatgttattctggctatccctacctctccctgtccccagGGAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtgacattagcatctgctctatgcctgctgaataactttggatttttgat Alignment from GeneWise GGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAA aggtcaattactatgttattctggctatccctacctctccctgtccccagGGAGTGCTGTAGAGCAATCCTTAGCTGTCAGTCAAGGTGGAGAACTCTCTGAAGAATGGCTGGAACTTAGAAATGGATGCCTCTGCTGTTCAGTCAAgtgacattagcatctgctctatgcctgctgaataactttggatttttgat #### Cbwd1_ID5369_2 --> 2 - 1 Original Alignment gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg gtttgacctgtatagctttcatatctattttattctttttctttccttaggtGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt Alignment from CESAR gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg gtttgacctgtatagctttcatatctattttattctttttctttccttaggtGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt Alignment from Spaln_aa2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gtttgacctgtatagctttcatatctattttattctttttctttccttagGTGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt Alignment from Spaln_nt2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gtttgacctgtatagctttcatatctattttattctttttctttccttagGTGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt Alignment from Pairagon GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gtttgacctgtatagctttcatatctattttattctttttctttccttagGTGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt Alignment from Exonerate_protein2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gtttgacctgtatagctttcatatctattttattctttttctttccttagGTGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt Alignment from Exonerate_coding2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gtttgacctgtatagctttcatatctattttattctttttctttccttagGTGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt Alignment from GeneWise GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gtttgacctgtatagctttcatatctattttattctttttctttccttagGTGCTGGAAAGACAACACTTCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaaggaaagagtagagctcaatgactgtaagcttgcagtaagatttggt #### Ccdc147_ID10402_4 --> 1 - 0 Original Alignment cATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagcATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact Alignment from CESAR cATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagcATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact Alignment from Spaln_aa2Genome CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagCATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact Alignment from Spaln_nt2Genome CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagCATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact Alignment from Pairagon CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagCATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact Alignment from Exonerate_protein2genome CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagCATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact Alignment from Exonerate_coding2genome CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagCATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact Alignment from GeneWise CATCCGAGATTTACTGAAGTTCAAAGAAGAGGTGACGAAGGAGCGTGACCAGCTCTTGTCAGAAGTGGTGAAATTGCGGGAGAACCTAGCTCAGACCATCGAAAAGCAGCAGGCAGCAGAGCACGCCAAGGAAGAAGCTGAAATGGCCATCAGTCAG aatccattccatctaacaggccatgtggtgagagagcccttttcctacagCATCTGGGACTTACTAAAGTTCAAAGAGGAGGTGACAAAGGAGCGTGACCAGCTCTTGTCGGAGGTGGTGAAACTGCAGGAGAATCTAGCTCAGTCAATTGAAAAAAAGGAAGCAGCTGAGCATGCTAAGGAAGAAGCTGAAATGGCTATCAGTCATgtaagtaaccacattccagtcagaaagtgggtctgtccttctggcctact #### Ccdc147_ID10409_8 --> 2 - 0 Original Alignment agGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagagGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc Alignment from CESAR agGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagagGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc Alignment from Spaln_aa2Genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagAGGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc Alignment from Spaln_nt2Genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagAGGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc Alignment from Pairagon AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagAGGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc Alignment from Exonerate_protein2genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagAGGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc Alignment from Exonerate_coding2genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagAGGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc Alignment from GeneWise AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG aattactccttggactcattacattatcactttatttttttgctgcacagAGGTGGAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtattttcattgcaacactggtgcacaagaccttctactcactatctggc #### Ccdc147_ID10422_12 --> 0 - 0 Original Alignment GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt Alignment from CESAR GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt Alignment from Spaln_aa2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt Alignment from Spaln_nt2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt Alignment from Pairagon GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt Alignment from Exonerate_protein2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt Alignment from Exonerate_coding2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt Alignment from GeneWise GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG tgtttagaccactcatctgtggaatgtgagaatttctcttttgattgcagGCAGAGCTACAGAAGCTGAGACAACATGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggtagtacatccgtgaaacccccaccacataaatccttt #### Ccdc147_ID10428_15 --> 0 - 0 Original Alignment GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac Alignment from CESAR GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac Alignment from Spaln_aa2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac Alignment from Spaln_nt2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac Alignment from Pairagon GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac Alignment from Exonerate_protein2genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac Alignment from Exonerate_coding2genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac Alignment from GeneWise GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG cacacaatgccttgagacagatgctatcctttctttttttcttttttaagGCCAGTGACCCTAGCACCTTTGAGCTTATCCAGAAAATCCACACCCTGCAGGAGCGACTCATAAGCAAGACAGAAGAGGTGGTGGAAAAAAAGCTGCTTCTCCAGgtgagtatttatgggcttggccctggggttgcatcatggtctctaggaac #### Ccdc172_ID12726_6 --> 2 - 2 Original Alignment ttCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGcg cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagttCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGcggtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc Alignment from CESAR ttCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGcg cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagttCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGcggtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc Alignment from Spaln_aa2Genome TTCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc Alignment from Spaln_nt2Genome TTCT---TAAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc Alignment from Pairagon TTC---TTAAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc Alignment from Exonerate_protein2genome TTCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc Alignment from Exonerate_coding2genome TTCTT---AAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc Alignment from GeneWise --GTTCTTAAAGATGAAGAGACTGAAGCCATTTGTATCACCAAACAGCTAGAGGCAGAAAAAACCAAAGTAAGAGATAAGCCTCAACATGATCCCGAGTGCGTGCG cagctgcagtctttccatgattataaaaacagtgtgctgctttctttcagTTCTGGTTAAAGATGAAGAAACTGAAGCCATTTGTATCACCCAACAGCTAGAGGCAGAAAAAACCAAAGTTAGAGATAAGCCTCAACATGATCCTGAGTGTGTGCGgtgagttgcctttgagtttatagaatgcagcaaaaccaagagagggcctc #### Ccdc88b_ID1823_26 --> 2 - 1 Original Alignment gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttaggaTCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGggtacatgggggttattagtaccacctctggggttcagagcaagtcctgct Alignment from CESAR gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttaggaTCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGggtacatgggggttattagtaccacctctggggttcagagcaagtcctgct Alignment from Spaln_aa2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttagGATCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtacatgggggttattagtaccacctctggggttcagagcaagtcctgct Alignment from Spaln_nt2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttagGATCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtacatgggggttattagtaccacctctggggttcagagcaagtcctgct Alignment from Pairagon GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttagGATCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtacatgggggttattagtaccacctctggggttcagagcaagtcctgct Alignment from Exonerate_protein2genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttagGATCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtacatgggggttattagtaccacctctggggttcagagcaagtcctgct Alignment from Exonerate_coding2genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttagGATCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtacatgggggttattagtaccacctctggggttcagagcaagtcctgct Alignment from GeneWise GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccaacgattctttgttttcatttagGATCTGGTGTGGAATGGGATGGCTCGATTAAGCCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtacatgggggttattagtaccacctctggggttcagagcaagtcctgct #### Ccdc88b_ID1829_20 --> 1 - 2 Original Alignment gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgagcataggctcccttctagctttttttttttctaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGaggtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from CESAR gCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGag ctcaaaaagctggtgagcataggctcccttctagctttttttttttctaggCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGaggtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Spaln_aa2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Spaln_nt2Genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Pairagon GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Exonerate_protein2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from Exonerate_coding2genome GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc Alignment from GeneWise GCATGAGCAGTTGCAGGCCCAACGGGCCAATGTGGAAGCACAAGAGGTAGCCCTACTGGCAGAGCGTGAGCGCCTGATGCAGGATGGACATCGGCAGCGCGGCCTGGAGGAGGAGCTGCGGAGACTTCAGAATGAGCACGAGAG ctcaaaaagctggtgagcataggctcccttctagctttttttttttctagGCGTGAGCAGTTGCATGCCCAGCGGGCCAATGTTGAGGCTCAAGAGGTAGCCCTACTGGCAGAGCGTGAACACTTGATGCAGGATGGGCATCGGCAGCGTGGTCTGGATGAAGAGCTGCGCAGACTTCAGAATGAGCATCAGAGgtaagtactttggttcagccctgcccccccacccccactcctggcttagc #### Ccdc88b_ID1830_19 --> 0 - 2 Original Alignment GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCcggtaagtttccccaagtgtacaacttttctccacagctcacttacctaact Alignment from CESAR GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCcggtaagtttccccaagtgtacaacttttctccacagctcacttacctaact Alignment from Spaln_aa2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCCGgtaagtttccccaagtgtacaacttttctccacagctcacttacctaact Alignment from Spaln_nt2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCCGgtaagtttccccaagtgtacaacttttctccacagctcacttacctaact Alignment from Pairagon GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCCGgtaagtttccccaagtgtacaacttttctccacagctcacttacctaact Alignment from Exonerate_protein2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCCGgtaagtttccccaagtgtacaacttttctccacagctcacttacctaact Alignment from Exonerate_coding2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCCGgtaagtttccccaagtgtacaacttttctccacagctcacttacctaact Alignment from GeneWise GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG ctttttgtacactggttgcctctctacaatctctctttaccctaccccagGCTGAAAAGTCAATGATGGAGATGCAGGGTCAGGAGCTGCATAGGAAGCTGGGAGTGCTAGAAGAGGAGGTGCGAGCAGCAAGATGGGCCCAAGAGGAGACCCGAGGGCAGCAGCAGGCTTTACTTCGAGACCATAAGGCCTTAGTACAGTTGCAACGGCGGCAGGAGACGGAGCTGGAAGGACTGCTGGTGCGGCACCGGGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCATCGTGAGCTTCGGGGCCGgtaagtttccccaagtgtacaacttttctccacagctcacttacctaact #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagtGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagtGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggccaatggacccaggcttacacccattaaattatgtcttaattcacagTGCTCCGAGTTCCCAAGGGGGACTTCGTATGGTCAGGGGGCGGGATGGTCCTGCTGCTTGTCAAATGTGGAACCTCTGTCATCTATGGGGGCGATTGAGGGATTTTTATCAGgtaagttatcaggatggtgaagtgtgaggcccagaagcacctattatgat #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTatgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTatgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGctgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tgacgacttaagtgtttcattgttgagaacccctattctgcctattccagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc Alignment from GeneWise -------------------------------------------------GATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT TGACGACTTAAGTGTTTCATTGTTGAGAACCCCTATTCTGCCTATTCCAGATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGCGTGGCCTCTTCGAGAATTATCCTTCGCCTGTCTCCAACATGGCCAACAAGACTACACTGTTTCACTGCCTATTCTTGGGACTTCTTGGTGCAGTGTATCGAACGGCTATTGCTgtagaacacttttcttctgtttctataacttgcaatcagcatcttccttc #### Ccs_ID661_7 --> 0 - 2 Original Alignment GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGaggtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt Alignment from CESAR GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGaggtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt Alignment from Spaln_aa2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt Alignment from Spaln_nt2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt Alignment from Pairagon GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt Alignment from Exonerate_protein2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt Alignment from Exonerate_coding2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt Alignment from GeneWise GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gagcagtcacaggaggctgatggcactgcgtgagtgttttctccttacagGTTTGGGATGTGATTGGCCGCAGCCTGGTTATTGATGAGGGGGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtcaggcacatatccaccaacagaggcagtgatatgccagtggtccactt #### Cd5_ID2989_9 --> 2 - 1 Original Alignment tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagtgTCTTTT---CGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAagtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca Alignment from CESAR tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagtgTCTTTT---CGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAagtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca Alignment from Spaln_aa2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagTGTCTTTT---CGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAAgtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca Alignment from Spaln_nt2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagTGTCTTT---TCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAAgtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca Alignment from Pairagon TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagTGTCTTT---TCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAAgtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca Alignment from Exonerate_protein2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagTGTCTTTT---CGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAAgtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca Alignment from Exonerate_coding2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagTGTCTTTT---CGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAAgtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca Alignment from GeneWise TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG tttttcttttgcctatgcaaacgatgttaatgtttggatatctgttacagTGTCTTTT---CGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAATCCAACTACATCTCATGTTGTCAATGAATACAGCCAGCCTACCAGGAACTCACACCTGTCTGCTTATCCAAgtcagtgggggcagagttgtttggctgctgtcccgacaggtgataggaca #### Cd5_ID2990_8 --> 2 - 1 Original Alignment ttCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACa ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagttCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACagtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca Alignment from CESAR ttCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACa ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagttCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACagtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca Alignment from Spaln_aa2Genome TTCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACA ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagTTCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACAgtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca Alignment from Spaln_nt2Genome TTCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACA ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagTTCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACAgtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca Alignment from Pairagon TTCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACA ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagTTCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACAgtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca Alignment from Exonerate_protein2genome TTCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACA ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagTTCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACAgtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca Alignment from Exonerate_coding2genome TTCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACA ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagTTCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACAgtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca Alignment from GeneWise TTCGTCAGAAAAAGCAGCGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACA ggaggtgctccccttcaccaccatctagttctacttttggggggggtcagTTCGGCAGAAAAAGCAACGTCAGTGGATTGGCCCCACAGGAGTGAACCAGAACAgtacgtgtactcagaagtatatatgtttctgtgtagtcacttcaacctca #### Cd5_ID2992_6 --> 2 - 1 Original Alignment atTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAt tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagatTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCtgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca Alignment from CESAR atTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAt tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagatTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCtgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca Alignment from Spaln_aa2Genome ATTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAT tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagATTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCTgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca Alignment from Spaln_nt2Genome ATTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAT tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagATTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCTgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca Alignment from Pairagon ATTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAT tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagATTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCTgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca Alignment from Exonerate_protein2genome ATTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAT tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagATTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCTgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca Alignment from Exonerate_coding2genome ATTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAT tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagATTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCTgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca Alignment from GeneWise ATTTCCAGCCCAAGGTTCAGAGCCGCCTGGTCGGGGGCAGCAGTGTGTGTGAGGGCATCGCTGAAGTGCGCCAGAGATCACAGTGGGAGGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGACGGTGGGAAGAGCTATGTCGGGAGCAGCAGTGTGGCGACCTCATCTCCTTCCACACGGTGGATGCTGACAAAACCTCCCCCGGGTTCCTCTGTGCCCAGGAGAAGCTGTCTCAGTGTTACCATCTCCAGAAAAAAAAACACTGCAACAAGAGGGTATTCGTCACAT tgggttgtgcattaccaagcctggacacctctctcttcttttctccttagATTTCCAGCCCAAGGTTCAAAGCCGCCTTGTTGGGTGCAGCAGTGTGTGTGAGGGCATTGCTGAAGTGCGTGAGAGACCACAGTGGACAGCCCTGTGTGACAGTTCTGCAGCCAGGGGCCGGGGATGCTGGGAAGAGCTATGTCGGGAGCAAGAGTGTGGTGACCTGATCTCGTTTCACACAGTGGATGCAGACAAAACCTCTCCTGGATTCCTCTGTGCCCAGGAGAAGCTATCTCAGTGTTACCATCTCCAGAAGAAAGAACACTGCAATAAGAGGGTATTCATCACCTgtgagctaactgcaaaagatgaaagagatttttcccctggaatatagtca #### Cd6_ID3017_7 --> 2 - 1 Original Alignment aaTCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACg tgatgaactgatcctctatctctttcatcctttctctttgtgccatttagaaTCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCTACCATCTTCGTAGTTATTCTTCTCTTGAGAGCAAAAGGACAGTATggtgagtagttgatgctcaagaagctgcaggtgtgggggagacacaggtgg Alignment from CESAR aaTCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACg tgatgaactgatcctctatctctttcatcctttctctttgtgccatttagaaTCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCTACCATCTTCGTAGTTATTCTTCTCTTGAGAGCAAAAGGACAGTATggtgagtagttgatgctcaagaagctgcaggtgtgggggagacacaggtgg Alignment from Spaln_aa2Genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcatcctttctctttgtgccatttagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCTACCATCTTCGTAGTTATTCTTCTCTTGAGAGCAAAAGGACAGTATGgtgagtagttgatgctcaagaagctgcaggtgtgggggagacacaggtgg Alignment from Spaln_nt2Genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcatcctttctctttgtgccatttagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCTACCATCTTCGTAGTTATTCTTCTCTTGAGAGCAAAAGGACAGTATGgtgagtagttgatgctcaagaagctgcaggtgtgggggagacacaggtgg Alignment from Pairagon AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcatcctttctctttgtgccatttagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCTACCATCTTCGTAGTTATTCTTCTCTTGAGAGCAAAAGGACAGTATGgtgagtagttgatgctcaagaagctgcaggtgtgggggagacacaggtgg Alignment from Exonerate_protein2genome AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcatcctttctctttgtgccatttagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCTACCATCTTCGTAGTTATTCTTCTCTTGAGAGCAAAAGGACAGTATGgtgagtagttgatgctcaagaagctgcaggtgtgggggagacacaggtgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG tgatgaactgatcctctatctctttcatcctttctctttgtgccatttagAATCCTCTGTGCCAGTGAGTGTAAAGGATAAGGACTCACAAGGGCTGACACTTCTAATTCTCTGTATTGTCTTGGGAATTCTTCTCCTCATCTCTACCATCTTCGTAGTTATTCTTCTCTTGAGAGCAAAAGGACAGTATGgtgagtagttgatgctcaagaagctgcaggtgtgggggagacacaggtgg #### Cdc37l1_ID6196_3 --> 0 - 1 Original Alignment AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTg ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTggtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc Alignment from CESAR AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTg ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTggtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc Alignment from Spaln_aa2Genome AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTG ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTGgtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc Alignment from Spaln_nt2Genome AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTG ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTGgtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc Alignment from Pairagon AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTG ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTGgtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc Alignment from Exonerate_protein2genome AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTG ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTGgtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc Alignment from Exonerate_coding2genome AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTG ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTGgtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc Alignment from GeneWise AGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAATATGAGCAAAAAATCAGACATTTTG ttgattttaattttaaccaagtgttggtaattaaagttctcttcgtgcagAGTTTTATTAATCAAGATAAAAGAAAAACAGAAGAGGAAGATAAATCACAATCATTTATGCAGAAGTATGAGCAAAAAATCAGACATTTTGgtaagcccaccgcttaaggctccttttcaattgtgttagagctagagttc #### Cdc37l1_ID6198_5 --> 0 - 0 Original Alignment AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac Alignment from CESAR AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac Alignment from Spaln_aa2Genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac Alignment from Spaln_nt2Genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac Alignment from Pairagon AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac Alignment from Exonerate_protein2genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac Alignment from Exonerate_coding2genome AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac Alignment from GeneWise AAAGGCGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAATGTGGATCCAAGAGGCTGTTTTCGTTTGTTTTTCCAGAAAGCCAAA ccagtgggctgagagctcacctcaattctaatagatttcattcctcctagAAAGGTGCTCTAATGGAACAGATAGCACACCAAGCTGTGGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGCAACGTAGATCCAAGAGGCTGTCTTCGTTTGTTTTTCCAGAAAGCCAAAgtaagcagtggcctattgctgttatactggttaacacataatgacaatac #### Cdc37l1_ID6199_6 --> 0 - 0 Original Alignment GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt Alignment from CESAR GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt Alignment from Spaln_aa2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt Alignment from Spaln_nt2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt Alignment from Pairagon GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt Alignment from Exonerate_protein2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt Alignment from Exonerate_coding2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt Alignment from GeneWise GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggcttttcgagtagagtgtggttctttttgtttttgttttattgcagGCAGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAGgtacagttagaacttgtgcacagtgacatacacctgtttaccacagctgt #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG cgggctttcctgttggtttggtctcgtctattttccttctttatggttagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaagtttgtgggcaattgccctccactaattgatagaagaagatatgct #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG taggaggtggaatcgtcctaagggcaaccaggggctgtgtcttctggcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCCGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAACAGGAGAAGGACCGCCTTCAGCAGgtgaggatgatgatgggaattttgttgtatgttttttggcagtgtataca #### Cdc42bpg_ID1588_18 --> 1 - 0 Original Alignment gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccaggGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt Alignment from CESAR gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccaggGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt Alignment from Spaln_aa2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt Alignment from Spaln_nt2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt Alignment from Pairagon GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt Alignment from Exonerate_protein2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt Alignment from Exonerate_coding2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt Alignment from GeneWise GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gcacctctgatactgaggacccaggtcacttcattctgttcccttgccagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACGCAGACACTTCCTACCCGGCCTTTGgtaaagcccttgcagatgaggcatgtatgtgtgtgcttgtgtggatgtgt #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca #### Cdc42bpg_ID1593_23 --> 0 - 0 Original Alignment AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa Alignment from CESAR AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa Alignment from Spaln_aa2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa Alignment from Spaln_nt2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa Alignment from Pairagon AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa Alignment from Exonerate_protein2genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa Alignment from Exonerate_coding2genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa Alignment from GeneWise AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG taggtgggatttctactgcaacccctccgctccactctgtcctcttccagAGTGTCTTCCCCCGGGTGCTTGCAGCCACCACCACCCCTGCCAAAGGTCCACCTGCGAAGgtgggtgtccggaggcctgccaatggtccaatctctcaaatgtaaaagaa #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagccTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc Alignment from CESAR ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagccTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc Alignment from Pairagon CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc Alignment from GeneWise CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG aagtcatgttaatggactttgatcctcctggggcccttttccttttctagCCTGTGGCTATTTCTGTCACTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACGGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACTGCCTACGAGGGCTTTCTGTCAgtaggatgtgggggctgtgggggctgtgggaatgagtgccagtccagccc #### Cdc42bpg_ID1601_31 --> 2 - 0 Original Alignment gtTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcaggtTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg Alignment from CESAR gtTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcaggtTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg Alignment from Spaln_aa2Genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcagGTTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg Alignment from Spaln_nt2Genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcagGTTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg Alignment from Pairagon GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcagGTTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg Alignment from Exonerate_protein2genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcagGTTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg Alignment from Exonerate_coding2genome GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcagGTTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg Alignment from GeneWise GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagcgctagacactagggcaccccctttccttgcagGTTACACAGCGCCCTACCTAACTGTCTTCAGTGAAAACACCCTTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtgagcgttagcccaggttgtgggctaggtgcagtgggtgacgcgggtgg #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagggCCAAGGACTTTGCTAACTAAGCCTTCAAAGTCATCCAAGCGTAAATCTGGTTCAGACCTCCCAAATTCATTCTCTGAAACCTGGCAAAGGgtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagggCCAAGGACTTTGCTAACTAAGCCTTCAAAGTCATCCAAGCGTAAATCTGGTTCAGACCTCCCAAATTCATTCTCTGAAACCTGGCAAAGGgtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagGGCCAAGGACTTTGCTAACTAAGCCTTCAAAGTCATCCAAGCGTAAATCTGGTTCAGACCTCCCAAATTCATTCTCTGAAACCTGGCAAAGGgtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagGGCCAAGGACTTTGCTAACTAAGCCTTCAAAGTCATCCAAGCGTAAATCTGGTTCAGACCTCCCAAATTCATTCTCTGAAACCTGGCAAAGGgtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagGGCCAAGGACTTTGCTAACTAAGCCTTCAAAGTCATCCAAGCGTAAATCTGGTTCAGACCTCCCAAATTCATTCTCTGAAACCTGGCAAAGGgtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct Alignment from Exonerate_protein2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagGGCCAAGGACTTTGCTAACTAAGCCTTCAAAGTCATCCAAGCGTAAATCTGGTTCAGACCTCCCAAATTCATTCTCTGAAACCTGGCAAAGGgtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct Alignment from Exonerate_coding2genome cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagggccaaggactttgctaactaagccttcaaagtcatccaagcgtaaatctggttcagacctcccaaattcattctctgaaacctggcaaagggtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct Alignment from GeneWise GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG cttttctttgagcaaaggtacgttcacttgaatttttgttcttttaacagGGCCAAGGACTTTGCTAACTAAGCCTTCAAAGTCATCCAAGCGTAAATCTGGTTCAGACCTCCCAAATTCATTCTCTGAAACCTGGCAAAGGgtaggtacttggtcccccaggtgctggggttggatttgtgtactgtggct #### Cep78_ID3976_10 --> 1 - 0 Original Alignment gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacaggAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt Alignment from CESAR gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacaggAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt Alignment from Spaln_aa2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt Alignment from Spaln_nt2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt Alignment from Pairagon GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt Alignment from Exonerate_protein2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt Alignment from Exonerate_coding2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt Alignment from GeneWise GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG gtgtgcatacattatgatgtgatttaatatttttatttgtgtgcacacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCAAATCACCTGAAGgtaagtatttgttaaatttctaacatgaggaaccacagttggagaaggtt #### Cep78_ID3978_8 --> 0 - 1 Original Alignment TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTg cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTggtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg Alignment from CESAR TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTg cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTggtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg Alignment from Spaln_aa2Genome TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTG cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTGgtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg Alignment from Spaln_nt2Genome TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTG cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTGgtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg Alignment from Pairagon TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTG cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTGgtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg Alignment from Exonerate_protein2genome TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTG cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTGgtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg Alignment from Exonerate_coding2genome TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTG cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTGgtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg Alignment from GeneWise TACCAGTGGGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGAAGCAGCCGGAAGGGAAAAGCAACCATTAGAATTG cagttaagtccttgtcaatgtgtaacagcttccttttccttccactctagTACCTATGGGTTACATCCCCTTCATCAAAGGAACCCTCTAAAACTGCTAAGCATAGAAAGAAAACAGTTGTCCTAGGAAGCAGCCGAAAGGGTAAAGCAACCATTCGAATTGgtaagacattttgtttgcctgttggtctgctttttatgtctcagcacctg #### Cep78_ID3984_2 --> 2 - 0 Original Alignment gtGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccaggtACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag Alignment from CESAR gtGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccaggtACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag Alignment from Spaln_aa2Genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag Alignment from Spaln_nt2Genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag Alignment from Pairagon GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag Alignment from Exonerate_protein2genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag Alignment from Exonerate_coding2genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag Alignment from GeneWise GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG ctaggatgtacagtagacattactaattgggctatgctcttctcttccagGTACTGATACACACCGAATTTGTAGAAATCGAGTTCCTGCAGTGAGACCCAAAGACATTAGTTTCCAGGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATTTGGAGCTAAATGGACTGATTCTAAGAGAGAGAGATTTGAGCAGTCTAATAAAGgtgagttatgtcgacctatggcacccacaacatttttagactgttctcag #### Cfl1_ID1060_2 --> 0 - 2 Original Alignment GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgttagGCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCtggtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag Alignment from CESAR GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgttagGCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCtggtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag Alignment from Spaln_aa2Genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgttagGCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCTGgtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag Alignment from Spaln_nt2Genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgttagGCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCTGgtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag Alignment from Pairagon ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgtTAGGCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCTGgtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag Alignment from Exonerate_protein2genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgttagGCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCTGgtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag Alignment from Exonerate_coding2genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgttagGCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCTGgtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag Alignment from GeneWise ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG ctagctatgcgccactatgtaacaaggtcatttactttctgtgttgttag---GCCTCTGGTGTGGCTGTCTCTGATGGTGTTATCAAAGTCTTCAATGACATGAAGGTTTGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAAAAGGTAGTACTCTTTTGCCTGAGTGAGGACAAGAAGAACATCACCCTGGAAGAGGGCAAGGACATCCTGGTAGGAGATCTAGGGCAGACTGTGGATGACCCCTACACTACCTTTGTCAAGATGCTACCAGACAAGGACTGCCACTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGTAAGAAGGAGGACCTGGTGTTCATCTTCTGgtgagattaatactcaggctcttgttcttacctctcgtttcccttctcag #### Chuk_ID8910_18 --> 1 - 0 Original Alignment cAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagcAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact Alignment from CESAR cAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagcAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact Alignment from Spaln_aa2Genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagCAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact Alignment from Spaln_nt2Genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagCAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact Alignment from Pairagon CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagCAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact Alignment from Exonerate_protein2genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagCAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact Alignment from Exonerate_coding2genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagCAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact Alignment from GeneWise CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gagttgtcagaagctggggcaagtattttcctccccttctctttctaaagCAAGCTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGTgtaggaaaaattatcagttaaggcagcatgtagctattgttacagctact #### Chuk_ID8923_5 --> 2 - 0 Original Alignment gaTCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacaggaTCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta Alignment from CESAR gaTCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacaggaTCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta Alignment from Spaln_aa2Genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacagGATCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta Alignment from Spaln_nt2Genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacagGATCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta Alignment from Pairagon GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacagGATCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta Alignment from Exonerate_protein2genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacagGATCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta Alignment from Exonerate_coding2genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacagGATCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta Alignment from GeneWise GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tggttcttgttgaacagtttactaaacacagatgatgttctcttggacagGATCTGGGATCCGATATCGGCATGAAAACAAAATCATACACCGAGATCTAAAACCTGAAAATATTGTTCTTCAAGATGTTGGTGGGAGAgtgagcgaatcatggcgatgttctcgcttattcttattgtctctctagta #### Cnnm1_ID8734_6 --> 2 - 1 Original Alignment atAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCc attatgtatactgcttacgtcctaaacctttcaattctttctttaactagatAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCcgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc Alignment from CESAR atAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCc attatgtatactgcttacgtcctaaacctttcaattctttctttaactagatAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCcgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc Alignment from Spaln_aa2Genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC attatgtatactgcttacgtcctaaacctttcaattctttctttaactagATAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCCgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc Alignment from Spaln_nt2Genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC attatgtatactgcttacgtcctaaacctttcaattctttctttaactagATAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCCgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc Alignment from Pairagon ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC attatgtatactgcttacgtcctaaacctttcaattctttctttaactagATAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCCgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc Alignment from Exonerate_protein2genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC attatgtatactgcttacgtcctaaacctttcaattctttctttaactagATAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCCgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc Alignment from Exonerate_coding2genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC attatgtatactgcttacgtcctaaacctttcaattctttctttaactagATAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCCgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc Alignment from GeneWise ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC attatgtatactgcttacgtcctaaacctttcaattctttctttaactagATAATGACTCCCAGAAGGTTGGAAGTCTGGCAGGATCCTCTGTCTTCCgtatgtatctctaaaaccccttccccctgtcttcccatccatagtccttc #### Cnnm2_ID10021_2 --> 2 - 1 Original Alignment ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagggAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACagtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt Alignment from CESAR ggAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACa cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagggAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACagtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt Alignment from Spaln_aa2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagGGAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACAgtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt Alignment from Spaln_nt2Genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagGGAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACAgtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt Alignment from Pairagon GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagGGAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACAgtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt Alignment from Exonerate_protein2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagGGAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACAgtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt Alignment from Exonerate_coding2genome GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagGGAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACAgtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt Alignment from GeneWise GGAAATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGACCTGTACA cttaaataattcagaaaatgatcttttcaccctgttttctctgtctttagGGAAATCCCACCTAGCCATTGTGCAGCGTGTGAACAATGAGGGTGAAGGGGACCCATTTTATGAGGTTCTGGGAATTGTCACCTTGGAAGATGTGATTGAAGAAATCATCAAATCTGAAATCTTGGATGAGACAGATCTGTACAgtgcgttcctttacatctgtgcccttgtcattggaactcctccccaaggt #### Cnnm2_ID10029_7 --> 2 - 0 Original Alignment ggGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagggGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga Alignment from CESAR ggGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagggGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga Alignment from Spaln_aa2Genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagGGGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga Alignment from Spaln_nt2Genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagGGGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga Alignment from Pairagon GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagGGGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga Alignment from Exonerate_protein2genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagGGGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga Alignment from Exonerate_coding2genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagGGGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga Alignment from GeneWise GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG gtccctacagaatactctacaggagttttacctgtatttttatcccacagGGGAAAATAAGTCACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGAGGTGACCGAACTGATGCCATGACACCAACCTTGGCAAGCAGCAACAACCAGCTTAGCTCTTCCTTTCTCCAAGTTTTTCTTCCTGACTACTCAGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagtggagagggctgcaggcatggaactggcaggtacatgtgcctgga #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagacacattgggctcctcgattcattggttctgtgatttttcttaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagacacattgggctcctcgattcattggttctgtgatttttcttaggaAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGT---------GTCAGTGGAGAAGGGTCACTACTGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAggtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAggtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from GeneWise AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag #### Col17a1_ID10292_30 --> 2 - 1 Original Alignment gtGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAg cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtaggtGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAggtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg Alignment from CESAR gtGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAg cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtaggtGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAggtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg Alignment from Spaln_aa2Genome GTGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAG cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtagGTGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAGgtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg Alignment from Spaln_nt2Genome GTGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAG cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtagGTGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAGgtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg Alignment from Pairagon GTGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAG cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtagGTGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAGgtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg Alignment from Exonerate_protein2genome GTGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAG cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtagGTGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAGgtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg Alignment from Exonerate_coding2genome GTGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAG cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtagGTGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAGgtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg Alignment from GeneWise GTGAACAAGGCTTGACAGGGATGCCTGGAACCCGGGGCCCCCCAGGACCCGCTGGAGACCCAGGAAAGCCAG cttagctgcacttccctgggggagagcatcttttttgtgtttgtttgtagGTGAACAAGGCTTGACAGGGATGCCTGGAACCCAGGGCCCACCAGGACCTGCGGGTGACCCAGGAAAGCCAGgtaagtgaactagaaaagcatgccaccaccatctatgaacatctgcagtg #### Col17a1_ID10296_26 --> 2 - 1 Original Alignment gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccaggtGACAAGGGACTGATAGGACCGCCTGGACCCAAAggtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat Alignment from CESAR gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccaggtGACAAGGGACTGATAGGACCGCCTGGACCCAAAggtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat Alignment from Spaln_aa2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccagGTGACAAGGGACTGATAGGACCGCCTGGACCCAAAGgtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat Alignment from Spaln_nt2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccagGTGACAAGGGACTGATAGGACCGCCTGGACCCAAAGgtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat Alignment from Pairagon GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccagGTGACAAGGGACTGATAGGACCGCCTGGACCCAAAGgtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat Alignment from Exonerate_protein2genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccagGTGACAAGGGACTGATAGGACCGCCTGGACCCAAAGgtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat Alignment from Exonerate_coding2genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccagGTGACAAGGGACTGATAGGACCGCCTGGACCCAAAGgtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat Alignment from GeneWise GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG ggcaaaccactacaggcctgtcacactattcccatgtctctatccaccagGTGACAAGGGACTGATAGGACCGCCTGGACCCAAAGgtgagaattgcccatggctgctcagagttcgctatggcttctcctacaat #### Col17a1_ID10299_23 --> 2 - 1 Original Alignment ggATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAg agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagggATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAggtaagctataaagaccggtcttggttctcagggattggccacattcaggg Alignment from CESAR ggATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAg agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagggATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAggtaagctataaagaccggtcttggttctcagggattggccacattcaggg Alignment from Spaln_aa2Genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagGGATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAGgtaagctataaagaccggtcttggttctcagggattggccacattcaggg Alignment from Spaln_nt2Genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagGGATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAGgtaagctataaagaccggtcttggttctcagggattggccacattcaggg Alignment from Pairagon GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagGGATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAGgtaagctataaagaccggtcttggttctcagggattggccacattcaggg Alignment from Exonerate_protein2genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagGGATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAGgtaagctataaagaccggtcttggttctcagggattggccacattcaggg Alignment from Exonerate_coding2genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagGGATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAGgtaagctataaagaccggtcttggttctcagggattggccacattcaggg Alignment from GeneWise GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agtttgtcggggtaggagtacctaagtaacagttgatttcctcctgtcagGGATTGCTGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCCTGGTCTCAGAGgtaagctataaagaccggtcttggttctcagggattggccacattcaggg #### Col17a1_ID10303_19 --> 2 - 1 Original Alignment gtGACATGGGGAGTCAAGGACCTAAAg tggttcatggttcctatacaattttgcaggaacaaactcatttctttcaggtGATATGGGGAGTCAGGGACCTAAAggtaagtattgcaaaaataccatagaagacagtggatgtgctgattgaatg Alignment from CESAR gtGACATGGGGAGTCAAGGACCTAAAg tggttcatggttcctatacaattttgcaggaacaaactcatttctttcaggtGATATGGGGAGTCAGGGACCTAAAggtaagtattgcaaaaataccatagaagacagtggatgtgctgattgaatg Alignment from Spaln_aa2Genome GTGACATGGGGAGTCAAGGACCTAAAG tggttcatggttcctatacaattttgcaggaacaaactcatttctttcagGTGATATGGGGAGTCAGGGACCTAAAGgtaagtattgcaaaaataccatagaagacagtggatgtgctgattgaatg Alignment from Spaln_nt2Genome GTGACATGGGGAGTCAAGGACCTAAAG tggttcatggttcctatacaattttgcaggaacaaactcatttctttcagGTGATATGGGGAGTCAGGGACCTAAAGgtaagtattgcaaaaataccatagaagacagtggatgtgctgattgaatg Alignment from Pairagon GTGACATGGGGAGTCAAGGACCTAAAG tggttcatggttcctatacaattttgcaggaacaaactcatttctttcagGTGATATGGGGAGTCAGGGACCTAAAGgtaagtattgcaaaaataccatagaagacagtggatgtgctgattgaatg Alignment from Exonerate_protein2genome GTGACATGGGGAGTCAAGGACCTAAAG tggttcatggttcctatacaattttgcaggaacaaactcatttctttcagGTGATATGGGGAGTCAGGGACCTAAAGgtaagtattgcaaaaataccatagaagacagtggatgtgctgattgaatg Alignment from Exonerate_coding2genome GTGACATGGGGAGTCAAGGACCTAAAG tggttcatggttcctatacaattttgcaggaacaaactcatttctttcagGTGATATGGGGAGTCAGGGACCTAAAGgtaagtattgcaaaaataccatagaagacagtggatgtgctgattgaatg Alignment from GeneWise --GGGAATCTCAGAGGAAGTCCTGGTCCAAAAGGTGACATGGGGAGTCAAGGACCTAAAGGAGAC------CGAGGCCTTCCTGGGACCCCAGGT- cctatacaattttgcagGAACAAACTCATTTCTTTCA------------GGTGATATGGGGAGTCAGGGACCTAAAGGTAAGTATTGCAAAAATACCATAGAAGACAGTGGATgtgctgattgaatg #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAAT- caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta #### Col17a1_ID10310_12 --> 2 - 1 Original Alignment caTACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCa ggactcttggtagttgcctgggaattccgttattttcttttaccttttagcaTATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCagtgaggagtggtactagttactaggaccctggttagcacacatagagagg Alignment from CESAR caTACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCa ggactcttggtagttgcctgggaattccgttattttcttttaccttttagcaTATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCagtgaggagtggtactagttactaggaccctggttagcacacatagagagg Alignment from Spaln_aa2Genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA ggactcttggtagttgcctgggaattccgttattttcttttaccttttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCAgtgaggagtggtactagttactaggaccctggttagcacacatagagagg Alignment from Spaln_nt2Genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA ggactcttggtagttgcctgggaattccgttattttcttttaccttttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCAgtgaggagtggtactagttactaggaccctggttagcacacatagagagg Alignment from Pairagon CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA ggactcttggtagttgcctgggaattccgttattttcttttaccttttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCAgtgaggagtggtactagttactaggaccctggttagcacacatagagagg Alignment from Exonerate_protein2genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA ggactcttggtagttgcctgggaattccgttattttcttttaccttttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCAgtgaggagtggtactagttactaggaccctggttagcacacatagagagg Alignment from Exonerate_coding2genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA ggactcttggtagttgcctgggaattccgttattttcttttaccttttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCAgtgaggagtggtactagttactaggaccctggttagcacacatagagagg Alignment from GeneWise CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA ggactcttggtagttgcctgggaattccgttattttcttttaccttttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACTGTCTCTAGCACTGTTGTGTCCACCTCTGCCAgtgaggagtggtactagttactaggaccctggttagcacacatagagagg #### Col17a1_ID10311_11 --> 2 - 1 Original Alignment tgTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAg ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagtgTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAggtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt Alignment from CESAR tgTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAg ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagtgTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAggtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt Alignment from Spaln_aa2Genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagTGTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAGgtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt Alignment from Spaln_nt2Genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagTGTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAGgtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt Alignment from Pairagon TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagTGTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAGgtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt Alignment from Exonerate_protein2genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagTGTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAGgtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt Alignment from Exonerate_coding2genome TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagTGTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAGgtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt Alignment from GeneWise TGTTTGGCATGCAGAACAATCTGGCCCCCAGCTCTTCTGTCCTCTCCCATGGCACAACCACCGCTTCCACAG ttaagatgcgacttaaagctcccagagatcccaagtgtgcctctccttagTGTTTGGCATGCAGAACAATCTAGCCCCCAGTTCTTCTGTCCTCTCTCATGGCACAACCACCGCTTCCACAGgtgagaactgcaagtctgaagctcacaagtgagaattgacaacccttagt #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaggaggtgatgctgcatcaacctcgccttgttcatttttcttagGAAAACCTCGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCGAGCAATGGGGCTCTACTGCCGTTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagactgtatgggcagcagactaaagctgaacataaaggaaagatttc #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAGCCC---CACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCaggtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAG---CCCCACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCaggtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAG---CCCCACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCAGgtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAGCCCC---ACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCAGgtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAGCCCC---ACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCAGgtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAG---CCCCACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCAGgtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAG---CCCCACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCAGgtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacataaaggaaagatttcattaaatgcacgttcccagtgtcctccacagGGTGATTCTAGCATCCGATACTTTGAGAATACAGATGAGCCC---CACATCCACTTCCTGAATACATTTGCAAGTAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCGGTCAGCAAGTGTGAAATAGCCAGgtatgtacactcactggggtggtcgtatgtcagcatagtgtcttaggatg #### Cpeb3_ID7267_9 --> 2 - 0 Original Alignment ttGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagttGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt Alignment from CESAR ttGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagttGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt Alignment from Spaln_aa2Genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt Alignment from Spaln_nt2Genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt Alignment from Pairagon TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt Alignment from Exonerate_protein2genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt Alignment from Exonerate_coding2genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt Alignment from GeneWise TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG actagatcccttttttgcgggtgaactcatattttttaatacttgtatagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCAAAAGGCACTGGGCGTGTTGCGTTTTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAATGACACTGACAAACAAgtgagtagccccttcttcgtgacgaaaagtggcatacttttgtacagagt #### Cpeb3_ID7269_8 --> 0 - 1 Original Alignment GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct Alignment from CESAR GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct Alignment from Spaln_aa2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct Alignment from Spaln_nt2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct Alignment from Pairagon GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct Alignment from Exonerate_protein2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct Alignment from Exonerate_coding2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct Alignment from GeneWise GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG aaggttaatggaaatgaagttagaaccatttcttctctgtttttttgaagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtgagtggaacgacatacagggcaaaagcagaccccaataccctagctct #### Cpeb3_ID7279_3 --> 2 - 1 Original Alignment gaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACa acctttgttttataagacctttgttttttagttttctgcttttgatttaggaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACagtgagctttaataaaaacacacaatctgtgattatcagacctctactggc Alignment from CESAR gaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACa acctttgttttataagacctttgttttttagttttctgcttttgatttaggaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACagtgagctttaataaaaacacacaatctgtgattatcagacctctactggc Alignment from Spaln_aa2Genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA acctttgttttataagacctttgttttttagttttctgcttttgatttagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtgagctttaataaaaacacacaatctgtgattatcagacctctactggc Alignment from Spaln_nt2Genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA acctttgttttataagacctttgttttttagttttctgcttttgatttagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtgagctttaataaaaacacacaatctgtgattatcagacctctactggc Alignment from Pairagon GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA acctttgttttataagacctttgttttttagttttctgcttttgatttagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtgagctttaataaaaacacacaatctgtgattatcagacctctactggc Alignment from Exonerate_protein2genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA acctttgttttataagacctttgttttttagttttctgcttttgatttagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtgagctttaataaaaacacacaatctgtgattatcagacctctactggc Alignment from Exonerate_coding2genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACACCAGGAGCTATGGGCGGAGACGAGGTC acctttgttttataagacctttgttttttagttttctgcttttgatttagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAGTGAGCTTTAATAAAAACACACAATCTgtgattatcagacctctactggc Alignment from GeneWise GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAAC- acctttgttttataagacctttgttttttagttttctgcttttgatttagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtgagctttaataaaaacacacaatctgtgattatcagacctctactggc #### Cpeb3_ID7283_2 --> 0 - 1 Original Alignment GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAg taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAggtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga Alignment from CESAR GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAg taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAggtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga Alignment from Spaln_aa2Genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga Alignment from Spaln_nt2Genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga Alignment from Pairagon GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga Alignment from Exonerate_protein2genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga Alignment from Exonerate_coding2genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga Alignment from GeneWise GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taattttatgaagttttttatatcgtctgtgtcttcttcatgggctccagGGCCAGAGTAGGCCCTATGACACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGCCCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtgagtaagattcatatgtctattcttgttggcaattcccacccacgtga #### Cpn1_ID8875_5 --> 0 - 1 Original Alignment CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGg cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGggtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag Alignment from CESAR CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGg cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGggtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag Alignment from Spaln_aa2Genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGGgtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag Alignment from Spaln_nt2Genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGGgtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag Alignment from Pairagon CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGGgtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag Alignment from Exonerate_protein2genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGGgtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag Alignment from Exonerate_coding2genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGGgtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag Alignment from GeneWise CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG cccctgccacgggtcaggactcctcacatgctttttctttctaaacctagCTGGCCAAAGTATACTCCTATGCCCCTGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGATGGTATCACAAATGGGGCATCATGGTATTCTCTCAGCAAGGgtgggtagaggatggcctggctgtggggcagtggggagtctaattctcag #### Cpn1_ID8876_4 --> 0 - 0 Original Alignment GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag Alignment from CESAR GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag Alignment from Spaln_aa2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag Alignment from Spaln_nt2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag Alignment from Pairagon GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag Alignment from Exonerate_protein2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag Alignment from Exonerate_coding2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag Alignment from GeneWise GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ttgctaagccccacattggctgccatccttttttctccttgtttacttagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATTCGCTCTTTGAACTTTGTTCTCTCAGCCAATATGCATGGTGGTGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCAACACCTGATGATGAGCTCTTCCAAACAgtaacaaaactagcgctccccggaggagggggtagggctcagagatgcag #### Cpn1_ID8877_3 --> 0 - 0 Original Alignment GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct Alignment from CESAR GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct Alignment from Spaln_aa2Genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct Alignment from Spaln_nt2Genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct Alignment from Pairagon GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct Alignment from Exonerate_protein2genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct Alignment from Exonerate_coding2genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct Alignment from GeneWise GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agtaggatgcagctttaagcactcatttagttagtctttattgttttcagGGCCCAAACATGTCCGGGTATTTGGTTGGTAGGAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACTACAACTCCAAGAATGGTGGCCCTAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAAgtgagaagtgaaaatggtaatagactccaattgaatcattacctggagct #### Cpsf7_ID2862_2 --> 0 - 0 Original Alignment GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact Alignment from CESAR GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact Alignment from Spaln_aa2Genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact Alignment from Spaln_nt2Genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact Alignment from Pairagon GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact Alignment from Exonerate_protein2genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact Alignment from Exonerate_coding2genome GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact Alignment from GeneWise GACTCGGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACGGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGCCTGCGGAGTCGGCGAGCAGCTGTCTATGTAGGCAGCTTCTCCTGG gtcaaactggcaagttgatggaagtccatcaccccatgccccgcccccagCACTCAGAGTTCAACAATACAGATCAGATTGACCTATATGATGATGTGTTGACAGCTGCCTCACAGCCCTCAGATGACAGAAGCAGTAGCACGGAACCACCCCCTCCTGTTCGCCAGGAGCCAGCTCCCAAACCAAACAACAAGACCCCTGCAATTCTGTATACATACAGTGGTTTGCGAAGTCAGCGGGCAGCTGTCTATGTAGGCAGCTTCTCCTGGgtagacaaggatagccaataatctcaatggtgagctggatggatagcact #### Cpt1a_ID35_7 --> 0 - 0 Original Alignment GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga Alignment from CESAR GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga Alignment from Spaln_aa2Genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga Alignment from Spaln_nt2Genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga Alignment from Pairagon GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga Alignment from Exonerate_protein2genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga Alignment from Exonerate_coding2genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga Alignment from GeneWise GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT cagactgccacatcacctgatcaacactacacctttccttttttttctagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGCAACACCATCCACGCGGTACTGCTGTATCGGTGTACAGTAGACTGTGAGGAGCTCAAACCTgtaaggaaattgtcctttaaaaatgtccctttgaaggctagaagggtgga #### Cpt1a_ID38_10 --> 1 - 2 Original Alignment aGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACag acctcccaacctatacaactgttcttagataaatgatgctttctttccagaGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACaggtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt Alignment from CESAR aGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACag acctcccaacctatacaactgttcttagataaatgatgctttctttccagaGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACaggtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt Alignment from Spaln_aa2Genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagataaatgatgctttctttccagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACAGgtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt Alignment from Spaln_nt2Genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagataaatgatgctttctttccagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACAGgtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt Alignment from Pairagon AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagataaatgatgctttctttccagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACAGgtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt Alignment from Exonerate_protein2genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagataaatgatgctttctttccagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACAGgtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt Alignment from Exonerate_coding2genome AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagataaatgatgctttctttccagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACAGgtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt Alignment from GeneWise AGTGCCCTGGGCGAAGTGTCGGCAGACCTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTGGACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGCTGCATGGTAGATGTTTCGACAG acctcccaacctatacaactgttcttagataaatgatgctttctttccagAGTTCCCTGGGCAAAAAGTCGGCAGACCTATTTTGCACAGGGAAAAAATAAACAATCTCTGGATGCAGTAGATAAGGCAGCATACTTCATTACATTGGATGAATCAGAACAGGGATACAGAGAGGAGGACCCTGAGGCATCCACGGACAGTTATGCCAAATCTTTACTGCATGGGAGATGTTTCGACAGgtaggctgcatttttaatctctggggttgatgggggaggtaacttgcatt #### Cpt1a_ID40_12 --> 0 - 0 Original Alignment TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc Alignment from CESAR TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc Alignment from Spaln_aa2Genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc Alignment from Spaln_nt2Genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc Alignment from Pairagon TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc Alignment from Exonerate_protein2genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc Alignment from Exonerate_coding2genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc Alignment from GeneWise TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA agtcgctcatggtttctaccccaccacccctgaggttattgttgttgcagTATGTCATGGCCACAGACATCTCCCAACTGGGCTACTCTGAGGATGGATACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTGCAGTGGGACATTCCAGGAGAAgtaacgctttcatcagaacaactaccaccacttgaaaggctgtgcttccc #### Crtac1_ID8461_11 --> 0 - 1 Original Alignment GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGg actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGggtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa Alignment from CESAR GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGg actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGggtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa Alignment from Spaln_aa2Genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGGgtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa Alignment from Spaln_nt2Genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCAT---TGATGGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGGgtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa Alignment from Pairagon GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGA---TGGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGGgtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa Alignment from Exonerate_protein2genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGGgtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa Alignment from Exonerate_coding2genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGGgtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa Alignment from GeneWise GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGATGGGGGT---TCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG actctatgccacccaccctagctgaagcgccttactgattcctctttcagGGCTTCAGCAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGCACCAAAGTTGTACTCTACACTATGAAGAGTGGAGCTCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCTCTGGCACATTTTGGCCTGGgtaagctggggcccataacaatggtagtagtagcctccctgtatgcacaa #### Crtac1_ID8477_5 --> 0 - 1 Original Alignment GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATATGGTGAG---GGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAggtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa Alignment from CESAR GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATATGGTGAG---GGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAggtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa Alignment from Spaln_aa2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATATGGTGAG---GGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAGgtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa Alignment from Spaln_nt2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATA---TGGTGAGGGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAGgtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa Alignment from Pairagon GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATATGGTGA---GGGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAGgtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa Alignment from Exonerate_protein2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATATGGTGAG---GGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAGgtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa Alignment from Exonerate_coding2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATATGGTGAG---GGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAGgtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa Alignment from GeneWise GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccagcactacaaggctgcccgtccatctggacctctctcttccagGGCTCTGGAAGATACTCCATCTACATAGCCAACTATGCATATGGTGAG---GGGCCTGATGCCCTCATACAGATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTTGCACTCAGGGATGTGGCAGCTGAGTCTGGGGTCAGCAAGTATACAGgtgaggagaattattagtaggtgatgggattgggggtacaaggccctgaa #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagagAGAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from CESAR agATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagagAGAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Pairagon AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagAGAGAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc Alignment from GeneWise AGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaataccactgggccacagtaccattaaacaagttttatctccacagagagAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtgggtttccaacctctctgtgcctccccaactcatcagcaacatgatcc #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTG------CTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTG------CTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct #### Ctsw_ID1018_8 --> 2 - 0 Original Alignment caATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagtaATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from CESAR caATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagtaATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Spaln_aa2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Spaln_nt2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Pairagon CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Exonerate_protein2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Exonerate_coding2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from GeneWise CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagagCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATagtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagagCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATagtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcaagccatggtatctgctcacatatcattctggttttacccacagAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc Alignment from GeneWise -------------------------------------------------GAGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA TGTGTCAAGCCATGGTATCTGCTCACATATCATTCTGGTTTTACCCACAGAGCTGTTGGATTGTGAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAACAATAgtaggttactaggcctcacaggagatgagtagggctagtgagtgctcagc #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccttcactgtcctcttgatgccatggatctctcttcccttttagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCTAACACATGGGGGGAGTCTGTACCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCGTCAATTAAGAACCAGgtaggagtcctgtccccacccagtttgggctaatccaaccaaggatactc #### Cutc_ID8811_6 --> 2 - 0 Original Alignment ccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg Alignment from CESAR ccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg Alignment from Spaln_aa2Genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg Alignment from Spaln_nt2Genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg Alignment from Pairagon CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg Alignment from Exonerate_protein2genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg Alignment from Exonerate_coding2genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg Alignment from GeneWise CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG caaatcagattatgttactgctcaaatcatgctgatcttgtctctttcagCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTGATAGACCAGgtgaatcccctttgtatttacttgggatgattatgggtatagccaggttg #### Cutc_ID8812_7 --> 0 - 1 Original Alignment GCAAAAGGCAGGATTGTGGTAATGCCAg tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcagGCAAAAGGGAGGATCGTGGTCATGCCAggtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt Alignment from CESAR GCAAAAGGCAGGATTGTGGTAATGCCAg tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcagGCAAAAGGGAGGATCGTGGTCATGCCAggtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt Alignment from Spaln_aa2Genome GCAAAAGGCAGGATTGTGGTAATGCCAG tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcagGCAAAAGGGAGGATCGTGGTCATGCCAGgtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt Alignment from Spaln_nt2Genome GCAAAAGGCAGGATTGTGGTAATGCCAG tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcagGCAAAAGGGAGGATCGTGGTCATGCCAGgtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt Alignment from Pairagon GCAAAAGGCAGGATTGTGGTAATGCCAG tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcagGCAAAAGGGAGGATCGTGGTCATGCCAGgtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt Alignment from Exonerate_protein2genome GCAAAAGGCAGGATTGTGGTAATGCCAG tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcagGCAAAAGGGAGGATCGTGGTCATGCCAGgtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt Alignment from Exonerate_coding2genome GCAAAAGGCAGGATTGTGGTAATGCCAG tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcagGCAAAAGGGAGGATCGTGGTCATGCCAGgtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt Alignment from GeneWise tactgatctttgtttaatgactagcatgcaaacctctccttgctcttcaggcaaaagggaggatcgtggtcatgccaggtatgtcctattaatgaccctgaaatggagttttgtaaaagtaaataagt #### Cwf19l1_ID8941_3 --> 0 - 1 Original Alignment CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAg atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAggtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg Alignment from CESAR CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAg atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAggtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg Alignment from Spaln_aa2Genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg Alignment from Spaln_nt2Genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg Alignment from Pairagon CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg Alignment from Exonerate_protein2genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg Alignment from Exonerate_coding2genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg Alignment from GeneWise CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAGTATAAGACCGGCAACAAGAAAG atagatctttaaagaactcgatttagttcatgagtctgtattccctggagTTGCTGTTGTGCGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGGAGGAATATAAGACCGGCAACAAGAAAGgtatgtgggaattggtttagtctaatgcatgacttatactaatgtagagg #### Cyp17a1_ID9997_3 --> 2 - 0 Original Alignment taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG cagacaattgttcgctgatttctccactatacccttctttccccttgcagtaTGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTGAAGgtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc Alignment from CESAR taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATA---------TTC------------------CCGTGGTTGAAG cagacaattgttcgctgatttctccactatacccttctttccccttgcagtaTGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTGAAGgtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc Alignment from Spaln_aa2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG--- cagacaattgttcgctgatttctccactatacccttctttccccttgcagTATGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATCTGgtggagataatcccatggttgaaggtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc Alignment from Spaln_nt2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAA---G cagacaattgttcgctgatttctccactatacccttctttccccttgcagTATGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATCTGgtggagataatcccatggttgaaggtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc Alignment from Pairagon TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAG---------------------------CGATCTGGTGGACATATTCCCGTGGTTGAAG cagacaattgttcgctgatttctccactatacccttctttccccttgcagTATGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTGAAGgtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc Alignment from Exonerate_protein2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG cagacaattgttcgctgatttctccactatacccttctttccccttgcagTATGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATctggtggagataatcccatggttgaaggtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc Alignment from Exonerate_coding2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG cagacaattgttcgctgatttctccactatacccttctttccccttgcagTATGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATctggtggagataatcccatggttgaaggtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc Alignment from GeneWise TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAGATT cagacaattgttcgctgatttctccactatacccttctttccccttgcagTATGCCAGGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTGTCTACACTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATTTGCTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGTATTGTTGAGGTCCTGGGCCACAGTGATCTGGTGGAGATAATCCCATGGTTTGATCTGgtggagataatcccatggttgaaggtaagtgggagatcccattatgcattgtccctagtacccagtttcccatc #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG tcacaaagccacttatcacacattactcttcctttgcatttgatgtttagCGTAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGGCGGCCAACAGTGCGGGTGATGGGTGCAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGCAGCAAAAGAAGgtaggtattggcaggccaccccttcaacggcgcggtgacatcatcctatg #### Cyp26a1_ID7417_5 --> 0 - 0 Original Alignment GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta Alignment from CESAR GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta Alignment from Spaln_aa2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta Alignment from Spaln_nt2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta Alignment from Pairagon GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta Alignment from Exonerate_protein2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta Alignment from Exonerate_coding2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta Alignment from GeneWise GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG tccatatgcaacacactgagaactgtaaagatcaactctctgcgctccagGCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagggaagttttttattcctaggactctcatccaccccaccagttcta #### Cyp2c29_ID7761_4 --> 2 - 0 Original Alignment gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcaggc---TCCTGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca Alignment from CESAR gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcaggcTCC---TGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca Alignment from Spaln_aa2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcagGCTCC---TGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca Alignment from Spaln_nt2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcagGCT---CCTGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca Alignment from Pairagon GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcagGCT---CCTGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca Alignment from Exonerate_protein2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcagGCTCC---TGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca Alignment from Exonerate_coding2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcagGCTCC---TGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca Alignment from GeneWise GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG cctttgtccactttagtgccatattcccaatctttgtcctccaatttcagGCTCC---TGTGACCCTACCTTTATCCCAAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGATTATAAAGATAAGGAATTCCTTATCCTGATGGATAAAATAAATGAGAATGTGAAGATTCTGAGCTCCCCATGGTTGCAGgtaaggtcatccccctgtttcggaaagttacaatgctttatcataaaaca #### Cyp2c29_ID7763_6 --> 0 - 1 Original Alignment GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTggttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa Alignment from CESAR GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTggttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa Alignment from Spaln_aa2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa Alignment from Spaln_nt2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa Alignment from Pairagon GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa Alignment from Exonerate_protein2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa Alignment from Exonerate_coding2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa Alignment from GeneWise GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtaataagatatgctagtaaatcaaatctgcccccacccccacccccagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCGAGCACTATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttcaaccacacacagttggtggatcacaacgtctgtggattgccggaaa #### Cyp2c37_ID7844_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagctAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagctAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagCTAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagCTAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagCTAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagCTAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagCTAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aatacatgccacttcccctctctccaacctctcactgtctattttcacagCTAAACTCCAGGAAGAAATTGAGCATGTGATTGGCATGCACCGAAGTCCCTGCATGCAGGACAGGAGTCACATGCCTTATAGTGATGCCATGATTCCCGAGGTTCAGAGGTTTATTGACCTCATCCCCAACAGTGTTCCCCATGAAGTGACGAGTGGCATTAAATTCAGGAATTACTTCATCCCCAAGgtaagtttatgttcttacatccctatacttaagatgcttgtaggcatgca #### Cyp2c38_ID7773_7 --> 2 - 0 Original Alignment ctAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagctAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGC---------------CATGCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg Alignment from CESAR ctAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagctAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGCCAT---------------GCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg Alignment from Spaln_aa2Genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagCTAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGCCAT---------------GCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg Alignment from Spaln_nt2Genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagCTAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGCC---------------ATGCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg Alignment from Pairagon CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagCTAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGCC---------------ATGCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg Alignment from Exonerate_protein2genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagCTAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGCCAT---------------GCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg Alignment from Exonerate_coding2genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagCTAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGCCAT---------------GCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg Alignment from GeneWise CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaattccaatgtacccatttcctttattttgttctgattactagCTAAAGTCCAAGAAGCGACTGACCATGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGCCAT---------------GCCATGATCCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtgagtttggcagtctgctgcacctttgtgctcttgataatcctaggagg #### Cyp2c54_ID7850_8 --> 0 - 1 Original Alignment GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAg agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAggtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt Alignment from CESAR GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAg agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAggtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt Alignment from Spaln_aa2Genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAG agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAGgtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt Alignment from Spaln_nt2Genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAG agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAGgtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt Alignment from Pairagon GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAG agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAGgtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt Alignment from Exonerate_protein2genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAG agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAGgtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt Alignment from Exonerate_coding2genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAG agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAGgtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt Alignment from GeneWise GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCGTGATAGCAAGGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAATGGAAAGTTTAAAAAAAGTGACTACTTCATGCCATTCTCAACAG agctctgtagtatggttgtaatgtggtatttttttttttttactgtaaagGGAACAACTGTGGTAACATCACTGTCATCTGTGTTGCGCGATAGCAAAGAGTTCCCCAATCCAGAGAAGTTTGACCCTGGCCACTTTCTAGATGAGAATGGCAGGTTTAAAAAAAGCGACTACTTCATGCCTTTTTCAACAGgtaagttaaactcgttatcatatgtatgacttacaaatttcagttatagt #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct #### Cyp2c55_ID7727_4 --> 2 - 0 Original Alignment gtTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacaggtTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc Alignment from CESAR gtTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacaggtTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc Alignment from Spaln_aa2Genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacagGTTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc Alignment from Spaln_nt2Genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacagGTTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc Alignment from Pairagon GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacagGTTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc Alignment from Exonerate_protein2genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacagGTTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc Alignment from Exonerate_coding2genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacagGTTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc Alignment from GeneWise GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG aaacccctgataaccttttaatattattcatcaattctcttttaaaacagGTTTGCTCTGTGATCCAACCTTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAAGTGTTTTGATTATAAAGATGAGAAGTTTCTCAACTTGATGGAGAGACTCAATGAAAACTTTAAAATTTCAAACTCCCCATGGATGCAGgtaaggaaacgcagtctctacatgtgaggaagtatacagttattactatc #### Cyp2c65_ID7739_5 --> 0 - 0 Original Alignment ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg Alignment from CESAR ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg Alignment from Spaln_aa2Genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg Alignment from Spaln_nt2Genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTTA---ATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg Alignment from Pairagon ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTTA---ATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg Alignment from Exonerate_protein2genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg Alignment from Exonerate_coding2genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg Alignment from GeneWise ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG tcaagagcccttgagtgtgtgtttttaactatcttttctttggtttgcagATTCGCAATAATTTCCCTGCTGTCATTGATTATCTACCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACTTTCTGTCACAAGTAAAACAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAAATGGAACAGgtaccctattatgtaaacttaaggtagttatttgactgtttgagctgttg #### Cyp2c66_ID7747_2 --> 0 - 1 Original Alignment TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTggtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga Alignment from CESAR TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTggtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga Alignment from Spaln_aa2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga Alignment from Spaln_nt2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga Alignment from Pairagon TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga Alignment from Exonerate_protein2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga Alignment from Exonerate_coding2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga Alignment from GeneWise TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccacagcttaatttgtttgtttgcaatgtgcatttttaaattctagTTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAGAAGCCTGCTGTGGTGCTACATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGGGGGACCTTTCCAGTGGCTGGTAAGTTTATCAGAGGATGTGgtgagtattcttaccattgtgttcacatacctctacctaagtgtccagga #### Cyp2c66_ID7748_3 --> 2 - 1 Original Alignment ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg cacccttcctctgattcttaatccttaggactttctacctttctgttcagggGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAggtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa Alignment from CESAR ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg cacccttcctctgattcttaatccttaggactttctacctttctgttcagggGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAggtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa Alignment from Spaln_aa2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cacccttcctctgattcttaatccttaggactttctacctttctgttcagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa Alignment from Spaln_nt2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cacccttcctctgattcttaatccttaggactttctacctttctgttcagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa Alignment from Pairagon GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cacccttcctctgattcttaatccttaggactttctacctttctgttcagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa Alignment from Exonerate_protein2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cacccttcctctgattcttaatccttaggactttctacctttctgttcagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa Alignment from Exonerate_coding2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cacccttcctctgattcttaatccttaggactttctacctttctgttcagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa Alignment from GeneWise GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAATTTTGGGATGGGGAAGAGGAGCATTGAGGACCGAGTTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG cacccttcctctgattcttaatccttaggactttctacctttctgttcagGGGTTGTTTTCAGCAGTGGCAGGACCTGGAAAGAGATGAGATGCTTCTCACTCATGACTCTGAGAAATTTCGGGATGGGGAAGAGGAGCATTGAGGACCGAGTGCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAAACAAAGgtgagcgtcaccccagtgggactcctctctttttgtgacatctaccagaa #### Cyp2c66_ID7753_8 --> 0 - 1 Original Alignment GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAggtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc Alignment from CESAR GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAggtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc Alignment from Spaln_aa2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc Alignment from Spaln_nt2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTT---TCCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc Alignment from Pairagon GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTT---TCCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc Alignment from Exonerate_protein2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc Alignment from Exonerate_coding2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc Alignment from GeneWise GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttccttttcaatcctgtatattatcataatgtcctttttgtcacagGGCTCTACTGTGATAGCATCACTAACTTCTGTGCTATATGATGATAAAGAGTTCCTAAACCCAGAGAGGTTT---CCCAGTCACTTTCTTGATGAAAGTGGCAAGTTTAAGAAGAGTGATTACTTTTTTCCTTTCTCAACAGgtgcgttgaaaattgattcaaggtcttttcaatctaagaatattgccacc #### Cyp2c67_ID7794_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAggtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc Alignment from CESAR GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAggtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAGgtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAGgtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc Alignment from Pairagon GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAGgtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAGgtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAGgtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc Alignment from GeneWise GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG ttaaggcccctgaggtatccatacattgaccactgtcatacacctcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGACAGCACTGAGTTCCCCAATCCAGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAACGGAAACTTTAAGAAAAGTCACTACCTTGTGCCTTTCTCAGCAGgtatgggaaagtcatttccacaagtgacatgaggagttgtggggcttatc #### Cyp2c67_ID7795_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGAC---------------ACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagctAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACC---------------TGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagctAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGC---------------ATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTA---------------ACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctactctatatattatattctcctaactgtctccttctccctctatgcagCTAAAGTCCAGGAAGAGAGTGACAATCTGATTGGGAGACACAGAAGCCCCTGTATGCAAGACAGGAACCATATGCCATACACAACTGTCATGGTTCATGAAATCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGATGAAGTCACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAGgtaaggtgaatcttccctgttatccctttgtgtgtttgttgttcccattt #### Cyp2c68_ID7805_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAg gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAggtagtgagtttgggcagtggttgttcagtggctctgaattgctaacagat Alignment from CESAR GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAg gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAggtagtgagtttgggcagtggttgttcagtggctctgaattgctaacagat Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAGgtagtgagtttgggcagtggttgttcagtggctctgaattgctaacagat Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAGgtagtgagtttgggcagtggttgttcagtggctctgaattgctaacagat Alignment from Pairagon GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAGgtagtgagtttgggcagtggttgttcagtggctctgaattgctaacagat Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAGgtagtgagtttgggcagtggttgttcagtggctctgaattgctaacagat Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAGgtagtgagtttgggcagtggttgttcagtggctctgaattgctaacagat Alignment from GeneWise GGAACACAGGTAATGACATCTCTGACATCAGTGCTGCATGACAGCACAGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAGGA- gaacttacaaaaagtgggtggactacagggtttgtcccctcacttttcagGGAACACAGGTAATGACATCTCTGACATCAGTACTGCATGAAAGTACAGAGTTTCCCAACCCAGAGGTATTCGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTGAGAAAAGTGACTACTTCATGCCTTTCTCAGCAGGTAgtgagtttgggcagtggttgttcagtggctctgaattgctaacagat #### Cyp2c68_ID7810_3 --> 2 - 1 Original Alignment gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg atttttgtgttatggatttccagggcctgttttctgcctgggttctgtaggcATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATggtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat Alignment from CESAR gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg atttttgtgttatggatttccagggcctgttttctgcctgggttctgtaggcATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATggtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat Alignment from Spaln_aa2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG atttttgtgttatggatttccagggcctgttttctgcctgggttctgtagGCATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATGgtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat Alignment from Spaln_nt2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG atttttgtgttatggatttccagggcctgttttctgcctgggttctgtagGCATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATGgtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat Alignment from Pairagon GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG atttttgtgttatggatttccagggcctgttttctgcctgggttctgtagGCATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATGgtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat Alignment from Exonerate_protein2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG atttttgtgttatggatttccagggcctgttttctgcctgggttctgtagGCATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATGgtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat Alignment from Exonerate_coding2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG atttttgtgttatggatttccagggcctgttttctgcctgggttctgtagGCATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATGgtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat Alignment from GeneWise GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG atttttgtgttatggatttccagggcctgttttctgcctgggttctgtagGCATTGGTTTTAGCCATGGGAATGTGTGGAAGGCCACAAGAGTCTTCACAGTCAATACCTTGAGAAACTTAGGCATGGGAAAAAGGACTATTGAGACCAAAGTGCAAGAGGAAGCACAGTGGCTAATGAAGGAACTGAAGAAAACAAATGgtgaggtcaggtcaggtctttttatgctgtttatgctgtggtctatgtat #### Cyp2c69_ID7829_6 --> 0 - 1 Original Alignment GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAggtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata Alignment from CESAR GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAggtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata Alignment from Spaln_aa2Genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAGgtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata Alignment from Spaln_nt2Genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAGgtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata Alignment from Pairagon GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAGgtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata Alignment from Exonerate_protein2genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAGgtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata Alignment from Exonerate_coding2genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAGgtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata Alignment from GeneWise GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ttgattgcaaatacggtatttatcagattatcaacgttaatgttttgtagGATAAAGGCATTGAGCATATGGAATATACTATCGAGCACTTGGCAACATTGGTTACTGATTTAGTTTTTGGTGGGACAGAGACGTTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTGATGAAGCACATACACATCACAGgtattaacatgagtcactgagtgaaccattcttaaagctttgaggagata #### Cyp2c69_ID7831_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccaggcTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca Alignment from CESAR gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccaggcTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccagGCTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccagGCTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca Alignment from Pairagon GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccagGCTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccagGCTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccagGCTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca Alignment from GeneWise GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaggcttaatgtagactgatcctaaaatgttctgtcttctactcggccagGCTCACCATGTGATCCCCAATTCATCATAGGGTGTACTCCCTGTAATGTAATTTGCTCAATTGTTTTTCAGAATCGTTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTGAATGAATGTACAGAAATTTTGAGCTCCCCTGGGTGTCAGgtgagtccaaggtttcccttactgaaatcacaggtggcacttttctttca #### Cyp2c70_ID7878_2 --> 0 - 1 Original Alignment CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAggtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc Alignment from CESAR CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAggtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc Alignment from Spaln_aa2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAGgtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc Alignment from Spaln_nt2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAGgtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc Alignment from Pairagon CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAGgtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc Alignment from Exonerate_protein2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAGgtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc Alignment from Exonerate_coding2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAGgtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc Alignment from GeneWise CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG gtggcatgtgtggcaaattcgcctacacacacgaccttttcctcctgcagTTAGCAAAAATGTATGGCCCCGTATTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTACTCAGTAGAACCAGCCAGGGCCTAGgtaaggctccttgttggggtgcatccagaccatgtaattggcaatgaagc #### D19Bwg1357e_ID5843_9 --> 1 - 0 Original Alignment gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttaggGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg Alignment from CESAR gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttaggGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg Alignment from Spaln_aa2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg Alignment from Spaln_nt2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg Alignment from Pairagon GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg Alignment from Exonerate_protein2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg Alignment from Exonerate_coding2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg Alignment from GeneWise GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctgacactttcaaacgtcatcatgctttagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtacaggcctgctttctgtcctttagagaagtcattaaaggtcctgatgg #### D19Bwg1357e_ID5848_4 --> 1 - 0 Original Alignment aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagaAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga Alignment from CESAR aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagaAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga Alignment from Spaln_aa2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagAAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga Alignment from Spaln_nt2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagAAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga Alignment from Pairagon AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagAAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga Alignment from Exonerate_protein2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagAAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga Alignment from Exonerate_coding2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagAAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga Alignment from GeneWise AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT tcacttaacttgtaaccattactgcgtgatgtcttgtcctttcttcacagAAAAGATTGTGACAAGGAAAAGCGGGTGAAGCACATGAGTGATTTGCAGAAGTTGATTCAAGGGAAGATTAAAACTgtatccagaggtgttcctattccatctaagctttcttttgctcttagtga #### D19Bwg1357e_ID5850_3 --> 2 - 2 Original Alignment aaTCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAag aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagaaTCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGaggtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt Alignment from CESAR aaTCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAag aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagaaTCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGaggtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt Alignment from Spaln_aa2Genome AATCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAAG aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagAATCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGAGgtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt Alignment from Spaln_nt2Genome AATCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAAG aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagAATCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGAGgtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt Alignment from Pairagon AATCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAAG aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagAATCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGAGgtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt Alignment from Exonerate_protein2genome AATCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAAG aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagAATCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGAGgtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt Alignment from Exonerate_coding2genome AATCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAAG aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagAATCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGAGgtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt Alignment from GeneWise AATCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCACATTTGGGAGAGCTTGAGAAG aagtcactaggtgattatgtccaatccagcctggcccgatctgattgcagAATCAGGGGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAAGAAAGAGCTGAAGCAGAGTCGGCAGCTCAGTGACAAGACCAACTATGACATTGTGTTTCGAGCAAAGCACATTTGGGAGAGCTTGAGGAGgtaagagtgggtcacttctcacactatcaacaagtgcaataggaagaggt #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctaggATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctaggATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg Alignment from Exonerate_coding2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gatgcacgcaaagacaaacagaccttacaatgacaagcatcttcttctagGATTGGCCTTTCCCAGCTGGAAGGTTTCCGCCGGCAGCTTCTGGATGTCCTTCAGCGGAGCACTAAACCCAAAgtatgagctgaacagttctgcaaccacagggaagtcctgcatgtcccttg #### Dagla_ID2762_8 --> 0 - 2 Original Alignment CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCtcgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt Alignment from CESAR CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCtcgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt Alignment from Spaln_aa2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCTCgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt Alignment from Spaln_nt2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCTCgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt Alignment from Pairagon CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCTCgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt Alignment from Exonerate_protein2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCTCgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt Alignment from Exonerate_coding2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCTCgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt Alignment from GeneWise CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagacaccatgtctctccctgcagCATGAGATGTTACACTACAAAGAAGTCTGCTATTACATGCTCTTTGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGTCTCTGTCAGCTTGCTCGGTCCTGCTCgtgagtccttgcttgcttccccactggagacttacaggcagcctctcagt #### Dagla_ID2765_6 --> 0 - 0 Original Alignment GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc Alignment from CESAR GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc Alignment from Spaln_aa2Genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc Alignment from Spaln_nt2Genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc Alignment from Pairagon GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc Alignment from Exonerate_protein2genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc Alignment from Exonerate_coding2genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc Alignment from GeneWise GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gttctgctgctctgcatctggctcctacctcaagctcctctcctctgcagGATGCTTACACAGAAATTGCCTACCTCTTTGCTGAACTCTCCCGTGACCTTGACATTGTGCCATCTGACATCATTGCTGGCCTCGTGTTGCTTAGGCAGCGGCAGCGAGCCAAAAGCAATGCAGTGCTGGACAAGgtaggtacccacaagctcccctgtgagtcctattgcacagcctgtggtgc #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcaggtACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGggtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcaggtACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGggtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTG- ctgctgccacccacaaaattaccatcccccttgccccgccttcctctcagGTACCCTAGGTGTGAGCTTGTCATCATGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGTTAGGCCTGGgtaagcccaccgtcatgatgcatcttctgcaactgtcttaggatgcctag #### Dak_ID2911_2 --> 0 - 1 Original Alignment AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCg gacaccacactctgaatctctaccccctgagagacttgtcttggtttcagAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTggtaaacattattcatcaattcattaatagaggtgttggccagggcagact Alignment from CESAR AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCg gacaccacactctgaatctctaccccctgagagacttgtcttggtttcagAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTggtaaacattattcatcaattcattaatagaggtgttggccagggcagact Alignment from Spaln_aa2Genome AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG gacaccacactctgaatctctaccccctgagagacttgtcttggtttcagAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTGgtaaacattattcatcaattcattaatagaggtgttggccagggcagact Alignment from Spaln_nt2Genome AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG gacaccacactctgaatctctaccccctgagagacttgtcttggtttcagAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCCC---CTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTGgtaaacattattcatcaattcattaatagaggtgttggccagggcagact Alignment from Pairagon AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG gacaccacactctgaatctctaccccctgagagacttgtcttggtttcagAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCCC---CTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTGgtaaacattattcatcaattcattaatagaggtgttggccagggcagact Alignment from Exonerate_protein2genome ATGAGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG gacaccacactctgaatctctaccccctgagagacttgtcttggtttCAGAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTGgtaaacattattcatcaattcattaatagaggtgttggccagggcagact Alignment from Exonerate_coding2genome ATGAGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG gacaccacactctgaatctctaccccctgagagacttgtcttggtttCAGAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTGgtaaacattattcatcaattcattaatagaggtgttggccagggcagact Alignment from GeneWise ATGAGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG gacaccacactctgaatctctaccccctgagagacttgtcttggtttCAGAGTTCTAAAACGATGGTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTCCAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACCGTCAATGCTCGTGTAGTACTTCTGTCAGGTGGGGGCTCAGGCCATGAGCCTGCCCATGCTGgtaaacattattcatcaattcattaatagaggtgttggccagggcagact #### Dclre1a_ID12121_6 --> 1 - 1 Original Alignment aTACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAg tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagaTACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTggtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca Alignment from CESAR aTACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAg tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagaTACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTggtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca Alignment from Spaln_aa2Genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagATACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTGgtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca Alignment from Spaln_nt2Genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagATACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTGgtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca Alignment from Pairagon ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagATACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTGgtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca Alignment from Exonerate_protein2genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagATACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTGgtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca Alignment from Exonerate_coding2genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagATACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTGgtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca Alignment from GeneWise ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG tttctctgtctctgacttttatcagcaaacatccttcatcccacccctagATACTGCAGCCCAGAATACACCTTCCCTTCACAGCAGGAGGTTATCCAGTTCGCGATCAACACAGCCTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTACTGCATTGGGAAGGAGAAAGTCTTCCTTGgtgagtggacatggtatctaatttgcactaacatattagaatgtttaaca #### Ddb1_ID2917_2 --> 2 - 0 Original Alignment gaCACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccaggcCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga Alignment from CESAR gaCACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccaggcCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga Alignment from Spaln_aa2Genome GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccagGCCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga Alignment from Spaln_nt2Genome GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccagGCCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga Alignment from Pairagon GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccagGCCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga Alignment from Exonerate_protein2genome GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccagGCCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga Alignment from Exonerate_coding2genome GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccagGCCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga Alignment from GeneWise GACACTTTACTTCAGCGGAAGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAGATCTATGTGGTCACTGCGGAGGGTCTTCGGCCAGTCAAAGAGGTGGGAATGTACGGGAAGATTGCAGTCATGGAGCTCTTCAGGCCCAAG ctgaaaggcccatcctccagcttctgaaagaaggtgtcctttccttccagGCCACTTTACCTCAGCAGAGGATCTGAACCTGTTGATTGCTAAAAACACAAGATTAGAAATCTATGTGGTTACCGCAGAGGGTCTGCGGCCAGTCAAAGAGGTGGGGATGTACGGCAAGATCGCAGTGATGGAACTCTTCAGGCCCAAGgtaagcgacaggcctgaggggaccagtcaaagattcaatgtgatgaatga #### Ddb1_ID2920_5 --> 0 - 1 Original Alignment GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAggtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct Alignment from CESAR GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAggtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct Alignment from Spaln_aa2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAGgtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct Alignment from Spaln_nt2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAGgtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct Alignment from Pairagon GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAGgtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct Alignment from Exonerate_protein2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAGgtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct Alignment from Exonerate_coding2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAGgtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct Alignment from GeneWise GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG gacccctacagtctggggcctaaccaatgatatctgcctcctccaactagGATCCTCAGGGGCGACACGTTAAAACTTATGAGGTGTCTCTTCGAGAGAAAGAGTTCAACAACGGCCCATGGAAACAGGAGAATGTAGAGGCTGAAGCTTCAATAGTGATGGCAGgtaagcgggtttgatgggaggtcccggtaggatgtagttctcccccctct #### Ddb1_ID2933_18 --> 1 - 0 Original Alignment gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcaggAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata Alignment from CESAR gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcaggAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata Alignment from Spaln_aa2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcagGAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata Alignment from Spaln_nt2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcagGAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata Alignment from Pairagon GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcagGAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata Alignment from Exonerate_protein2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcagGAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata Alignment from Exonerate_coding2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcagGAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata Alignment from GeneWise GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcatactttgtctagtggtaccatcctgtctccttgtccttgcagGAAAATTTGCTACGAGGAAGTGTCTCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTCCAAGATAGTTGTGGAGGCACTACAGCGTTAAGGCCCAGTGCCAGCACCCAGgtgagcacagtggaggaggatggcagtggagttagcaagcatttctcata #### Dmrt1_ID5487_4 --> 0 - 1 Original Alignment ATGAAGACCTCAGAGAGCCGCCACCCAGTGAGC---TCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTg tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTggtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc Alignment from CESAR ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTg tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTggtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc Alignment from Spaln_aa2Genome ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTGgtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc Alignment from Spaln_nt2Genome ATGAAGACCTCAGAGAGCCGCCACCCAGT---GAGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTGgtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc Alignment from Pairagon ATGAAGACCTCAGAGAGCCGCCACCCAGT---GAGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTGgtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc Alignment from Exonerate_protein2genome ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTGgtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc Alignment from Exonerate_coding2genome ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTGgtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc Alignment from GeneWise ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgtactcactaaaactataacaaagactactgccttcttccttcctctagATGAAGACCTCAGAGAGCCGCCACCCAGTGAAGAGTTCCCAGTACCGGATGCAGTCATACTATGGGCCCCCCTCTTACTTGGGACAGAGCATGTCCCAGATCTTTACCTTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCGAGTGgtaatgtgtttctgtagtgggagtctgggttgggtgttgggatggcatcc #### Dnmbp_ID8853_13 --> 0 - 1 Original Alignment CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGAC---AGGggtgagcgtctgactcaggatgtcttttgagttaattcactcccaacagtg Alignment from CESAR CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGAC---AGGggtgagcgtctgactcaggatgtcttttgagttaattcactcccaacagtg Alignment from Spaln_aa2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGAC---AGGGgtgagcgtctgactcaggatgtcttttgagttaattcactcccaacagtg Alignment from Spaln_nt2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGACA---GGGgtgagcgtctgactcaggatgtcttttgagttaattcactcccaacagtg Alignment from Pairagon CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGACA---GGGgtgagcgtctgactcaggatgtcttttgagttaattcactcccaacagtg Alignment from Exonerate_protein2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACG tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGACAGGGgtgagcgtctgactcaggatgtcttttgagttaattcactcccaacagtg Alignment from Exonerate_coding2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACG tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGACAGGGgtgagcgtctgactcaggatgtcttttgagttaattcactcccaacagtg Alignment from GeneWise CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAGTC- tttggttcgctttttacctaatacattttaaatgtagcatatgtcttcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCGAGGTACCCACTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGCACAGGACTTGGATGTCTCTCTTTTGGAGGGCGACCTCGTGGGTGAGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGTTGGCTAGTGGACAGGGGTGAGCgtctgactcaggatgtcttttgagttaattcactcccaacagtg #### Dnmbp_ID8858_8 --> 2 - 0 Original Alignment tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagtgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from CESAR tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagtgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Spaln_aa2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Spaln_nt2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Pairagon TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Exonerate_protein2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from Exonerate_coding2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac Alignment from GeneWise TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttggtgtaggggaagagctcttggccggctcccttcttctccaactagTGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTCAACATTCACTCGATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCACAGgtgagttatgattttgtctatcagggtctgggcccacatacaaaagttac #### Dnmbp_ID8859_7 --> 1 - 1 Original Alignment gGGA---TGCACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGg gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtaggGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTggtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat Alignment from CESAR gGGA---TGCACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGg gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtaggGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTggtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat Alignment from Spaln_aa2Genome GGGA---TGCACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGG gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtagGGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTGgtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat Alignment from Spaln_nt2Genome GGGATGC---ACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGG gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtagGGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTGgtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat Alignment from Pairagon GGGA---TGCACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGG gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtagGGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTGgtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat Alignment from Exonerate_protein2genome GGGA---TGCACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGG gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtagGGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTGgtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat Alignment from Exonerate_coding2genome GGGA---TGCACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGG gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtagGGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTGgtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat Alignment from GeneWise GGGATGC---ACCAATTACATCAACCTGGGCTCCTTCCTCATCAAGCCCGTACAGAGAATAATGCGTTACCCGCTGCTGCTGATGGAGTTGCTGAATTCCACCCCAGAATCCCACCCGGATAAAGTGCCTTTAACCAACGCGGTCCTCGCCGTCAAGGAGATCAATGTTAACATTAATGAGTACAAGCGTCGGAAGGATCTGG gtgcacatggacgcctttaactggtgtcaaagcccttgccccttctgtagGGGATGCTGCACCAATTACATCAACCTCGGCTCCTTCCTCATCATGCCTGTACAGAGAATAATGCATTATCCATTGCTGCTGATGGAGTTGCTAAATTCCACCCCAGAATCCCACCCTGATAAAGTGCCTTTAACCAATGTGGTCCTTGCTGTTAAGGAGATTAATATTAACATTAATGAGTACAAGCGTCGGAAGGATCTTGgtaactaggtgcaactgtaaaggcatttccctcctcaggaaattacttat #### Dntt_ID8080_6 --> 0 - 1 Original Alignment CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAg tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAggtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt Alignment from CESAR CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAg tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAggtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt Alignment from Spaln_aa2Genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAGgtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt Alignment from Spaln_nt2Genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAGgtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt Alignment from Pairagon CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAGgtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt Alignment from Exonerate_protein2genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAGgtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt Alignment from Exonerate_coding2genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAGgtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt Alignment from GeneWise CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tcttagcaacaaattagatggattttagaggtgactttgcgtttctgtagCTCTTTACCTCTGTGTTTGGTGTGGGACTTAAGACATTTGAGAAATGGTTCAGGACGGGTTTGAAGACTCTCAGTAAGATACAATCAGACAAAAGCCTGAGGTTTACACAGACGCAGAAAGCAGgtaatatctttagggaagtcatgggtcatccaggcgtgtcaggatccatt #### Dntt_ID8081_7 --> 2 - 2 Original Alignment gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttaggtTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACaggtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa Alignment from CESAR gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttaggtTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACaggtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa Alignment from Spaln_aa2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttagGTTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACAGgtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa Alignment from Spaln_nt2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttagGTTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACAGgtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa Alignment from Pairagon GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttagGTTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACAGgtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa Alignment from Exonerate_protein2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttagGTTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACAGgtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa Alignment from Exonerate_coding2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttagGTTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACAGgtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa Alignment from GeneWise GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tgtcgacgtccagtcctctcatatgttccttggtcatttatctactttagGTTTCCAGTACTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGCAGTTGTGACATTTCTTCCAGATGCCTTGGTCACTATGACTGGTGGGTTCCACAGgtgagtgatataacagtgttttggaaccctttttctctggaaggatgaaa #### Dock8_ID5378_3 --> 0 - 2 Original Alignment CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAgg gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAgggtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga Alignment from CESAR CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAgg gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAgggtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga Alignment from Spaln_aa2Genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAGGgtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga Alignment from Spaln_nt2Genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAGGgtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga Alignment from Pairagon CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAGGgtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga Alignment from Exonerate_protein2genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAGGgtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga Alignment from Exonerate_coding2genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAGGgtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga Alignment from GeneWise CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaacttgtgtatcagtattctttcctgaatgcacagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTAAACAGCTTAGATGCAGAGCTGGCCCAGGAGCTTGGGGACCTGACCGATGATGACCTACATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCACTCTTTGTCAGAGGAAGGgtaataaatcttgttgaaactatgcaatctgttactgctatcctgggtga #### Dock8_ID5384_7 --> 0 - 2 Original Alignment GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGaa caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGaagtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt Alignment from CESAR GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGaa caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGaagtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt Alignment from Spaln_aa2Genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGAAgtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt Alignment from Spaln_nt2Genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGAAgtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt Alignment from Pairagon GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGAAgtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt Alignment from Exonerate_protein2genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGAAgtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt Alignment from Exonerate_coding2genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGAAgtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt Alignment from GeneWise GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA caaacctctagggaaggttgctgtctttggtatgcgtttttgtcatttagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTGGGCAACAGAATATTGCTCAAGGTGCTGACTCTGAAgtaaatgtcaggttcctgactctgaagtcattgtcaggctccctgccatt #### Dock8_ID5390_13 --> 0 - 1 Original Alignment GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAg agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAggtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta Alignment from CESAR GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAg agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAggtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta Alignment from Spaln_aa2Genome GGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCA agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAGgtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta Alignment from Spaln_nt2Genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAGgtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta Alignment from Pairagon GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAGgtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta Alignment from Exonerate_protein2genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAGgtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta Alignment from Exonerate_coding2genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAGgtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta Alignment from GeneWise GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG agtccagaatcaacagcacctccccacttttctcctttctccacctccagGAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGGTCTTCATCCCTACAACGAAGAGTCAAATCCATCCCAGgtcatttgggtatctcttaggcatcttcagtacaggctgcatctgctgta #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACaagtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc Alignment from CESAR GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAGTCC---AGGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACaagtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc Alignment from Spaln_aa2Genome GGTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATA ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAG---TCCAGGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc Alignment from Spaln_nt2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAGTCCA---GGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc Alignment from Pairagon GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAGTCCA---GGCCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc Alignment from Exonerate_coding2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc Alignment from GeneWise GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgttcgtagagccccaaattcctctgaaacaagattctctttattttagGTCATCTACGGAAAGTCCAGG---CCTGAATTCCTGCAGGAAGTATATACAGCTATTACATACCATAACAAgtcaggatgaatcatagtctcaaacacctactagaaacacctatacattc #### Dock8_ID5400_21 --> 2 - 1 Original Alignment caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagcaAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAggtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa Alignment from CESAR caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagcaAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAggtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa Alignment from Spaln_aa2Genome GCAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCA taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagCAAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAGgtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa Alignment from Spaln_nt2Genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagCAAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAGgtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa Alignment from Pairagon CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagCAAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAGgtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa Alignment from Exonerate_protein2genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagCAAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAGgtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa Alignment from Exonerate_coding2genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagCAAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAGgtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa Alignment from GeneWise CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcctgaagacttgacaacagtctcttttttttttttttgtctccagCAAACTTCTCCCAGTTTGCCTTTGAGTCTGTGGTGCCTATTGCCAATAGCTTGCACAACAGCAAGGACTTACGGAAGGACCAGCACAGCAGGAACTGTCTCCTGGCTTCATATGTGCAATATGTGTTCCGGCTACCAGAACTGCACAGGGATACATCCAAATCAGgtaagtctttgccggaggggtagggggggggctggaggtgggggtgggaa #### Dock8_ID5404_24 --> 0 - 0 Original Alignment CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca Alignment from CESAR CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca Alignment from Spaln_aa2Genome GCATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCT gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca Alignment from Spaln_nt2Genome CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca Alignment from Pairagon CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca Alignment from Exonerate_protein2genome CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca Alignment from Exonerate_coding2genome CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca Alignment from GeneWise CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG gagtactatgcaatttagcacagtgtggtgctgtcctgtgtcctttctagCATTTCCATGAAGAGCTTTCCCTGCAGATGGTCGTCAGCATTGGAGTAGTGAGGGAAACGGTCTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtatgtttcttgggatttcatctatactttgtctgggcacatagagcaca #### Dock8_ID5407_26 --> 0 - 0 Original Alignment GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAAC---CTCAAGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat Alignment from CESAR GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat Alignment from Spaln_aa2Genome GGAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCA cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat Alignment from Spaln_nt2Genome GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAACCTCA---AGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat Alignment from Pairagon GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAACC---TCAAGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat Alignment from Exonerate_protein2genome GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat Alignment from Exonerate_coding2genome GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat Alignment from GeneWise GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG cctgttgtgggctaaacactatgttatgaaaatcgagctttattttacagGAGAGCGAGCAGGCAGAGAAAATCAACATAAGCCTCACCTTCTTCTTGTATGAACTCCTGTCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAGCATTACTGCAGCCAAgtaagactgtagcggtggatcatcccttctgcaccgactgctaatgtgat #### Dock8_ID5408_27 --> 0 - 0 Original Alignment CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg Alignment from CESAR CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg Alignment from Spaln_aa2Genome GCTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCA ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg Alignment from Spaln_nt2Genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg Alignment from Pairagon CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg Alignment from Exonerate_protein2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg Alignment from Exonerate_coding2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg Alignment from GeneWise CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG ctgccgtaatcctactctaaacatccctccccccacatcactgctgacagCTGTCAGCCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAATTCCTGAGAATTCTCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACTGACACTGCACCTGCATCTCCCTGTCCCTCGACGTCGTCCCAGgtaaactgctaactagaggaaagggatgagctgctgtgtcatgaagcagg #### Dock8_ID5411_30 --> 2 - 0 Original Alignment atGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagacGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc Alignment from CESAR atGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagacGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc Alignment from Spaln_aa2Genome GATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTT tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagACGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc Alignment from Spaln_nt2Genome ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagACGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc Alignment from Pairagon ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagACGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc Alignment from Exonerate_protein2genome ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagACGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc Alignment from Exonerate_coding2genome ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagACGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc Alignment from GeneWise ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG tggatctgtaatctatgctagacatcacggcatatcatcttcttttaaagACGCTCATAGTGGGAGGAGTTGTGCCAGTGGCTCATATGATGAGCAAGATGTGGCCAATGGAATCAACCAGAATGTGGCCCTGACAATAGCAGGGAACCACTTTAATTTAAAGACCAGTGGAGCAATGCTGTCTTCCTTGgtagcagtgcactgtacatttcttgggtatatttctgtcaaatgttaccc #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_aa2Genome GGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCA gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg #### Dock8_ID5416_34 --> 1 - 0 Original Alignment aACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cagttgtcagctcggctacccagctaggaacccttccttcctggttctagaACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt Alignment from CESAR aACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cagttgtcagctcggctacccagctaggaacccttccttcctggttctagaACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt Alignment from Spaln_aa2Genome AAACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCA cagttgtcagctcggctacccagctaggaacccttccttcctggttctagAACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt Alignment from Spaln_nt2Genome AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cagttgtcagctcggctacccagctaggaacccttccttcctggttctagAACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt Alignment from Pairagon AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cagttgtcagctcggctacccagctaggaacccttccttcctggttctagAACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt Alignment from Exonerate_protein2genome AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cagttgtcagctcggctacccagctaggaacccttccttcctggttctagAACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt Alignment from Exonerate_coding2genome AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cagttgtcagctcggctacccagctaggaacccttccttcctggttctagAACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt Alignment from GeneWise AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cagttgtcagctcggctacccagctaggaacccttccttcctggttctagAACAAAGGCAGAGTTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCAACAGAAGCTAATTTAATCATCCTGGATATGCAGGAGAACATCATCCAGgtgagtgattaggatgactcagagaaagaggcttggagaggaaagggagt #### Dock8_ID5425_43 --> 0 - 0 Original Alignment GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag Alignment from CESAR GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag Alignment from Spaln_aa2Genome GGGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAA gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag Alignment from Spaln_nt2Genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag Alignment from Pairagon GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag Alignment from Exonerate_protein2genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag Alignment from Exonerate_coding2genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag Alignment from GeneWise GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG gaatgcagcctccaattgcagctttagaatatcaatttcttggtccacagGGATTTTATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGTAATAAAAGATTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAATAAGgtaagccaagattttatactaagaggtgcttgaacattctaccctcagag #### Dock8_ID5429_47 --> 1 - 2 Original Alignment aTGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGag ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcaggTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAaggtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg Alignment from CESAR aTGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGag ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcaggTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAaggtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg Alignment from Spaln_aa2Genome GATGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGA ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcagGTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAAGgtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg Alignment from Spaln_nt2Genome ATGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGAG ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcagGTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAAGgtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg Alignment from Pairagon ATGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGAG ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcagGTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAAGgtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg Alignment from Exonerate_protein2genome ATGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGAG ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcagGTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAAGgtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg Alignment from Exonerate_coding2genome ATGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGAG ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcagGTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAAGgtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg Alignment from GeneWise ATGCGGAGAGGCCGTGGAGAAGAACAGGCGACTCATCACCGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAGAAGAACTACAACAAGCTGAGAGACAGCCTCAGGCCCATGATTGAGCGGAAAATCCCAGAGCTCTACAAGCCCATATTCAGAGTTGACAGTCAGAAGAG ggacactggcaaaaaataaactttgtgtctctttctttcctacatttcagGTGCGGAGAGGCTGTGGAGAAGAACAGGCGACTCATCACTGCAGAGCAGCGGGAGTACCAGCAGGAGCTGAAAAAGAACTACAACAAGCTGAGGGACAGCCTCAGGCCCATGATTGAGCGGAAGATCCCAGAGCTCTACAAGCCTATATTCAGAGTTGACAGTCAGAAAAGgtgagtacatgatgtgctggtgtagccttttcctgggcattagcctcatg #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacgcgctgatgatagtcaaatgtgtgttatctttgggtccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtaagtccatagcagactgtactccaggtccagaaaccccctgtgctgct #### Dpf2_ID1306_7 --> 2 - 1 Original Alignment ttTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAt accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagttTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAAtgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa Alignment from CESAR ttTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAt accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagttTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAAtgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa Alignment from Spaln_aa2Genome TTTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAT accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagTTTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAATgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa Alignment from Spaln_nt2Genome TTTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAT accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagTTTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAATgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa Alignment from Pairagon TTTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAT accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagTTTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAATgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa Alignment from Exonerate_protein2genome TTTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAT accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagTTTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAATgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa Alignment from Exonerate_coding2genome TTTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAT accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagTTTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAATgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa Alignment from GeneWise TTTGTGGAAAACGTTACAAGAACCGACCTGGCCTCAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCCCCCACTCCTGTGTCCCAGAGGTCTGAGGAGCAGAAAT accagaatggggaatcgttgcactctaaggtcttgtcatgtctccaacagTTTGTGGGAAACGCTACAAGAACAAACCTGGCCTTAGTTACCACTATGCCCACTCCCACCTGGCTGAAGAGGAAGGAGAGGACAAAGAAGACTCCCGACCACCCACTCCTGCATCCCAGAGGTCTGATGAGCAGAAATgtgagttgatctggcagggcaaggatgcaggagaggaaatgattataaaa #### Dpf2_ID1310_4 --> 2 - 0 Original Alignment acACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagacACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg Alignment from CESAR acACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagacACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg Alignment from Spaln_aa2Genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagACACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg Alignment from Spaln_nt2Genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagACACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg Alignment from Pairagon ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagACACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg Alignment from Exonerate_protein2genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagACACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg Alignment from Exonerate_coding2genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagACACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg Alignment from GeneWise ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ctggttcagcttgagcccatttcagttacccctgtcttatatacttacagACACCGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCCCGAGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtgggttaatgccatggctaggaatcctcaatgtgaactgtctctctttg #### Dpf2_ID1311_3 --> 2 - 1 Original Alignment gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg attttttggggctaggtcagtgtttaatatgtattttgttatctcttcaggaCTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAggtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac Alignment from CESAR gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg attttttggggctaggtcagtgtttaatatgtattttgttatctcttcaggaCTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAggtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac Alignment from Spaln_aa2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctaggtcagtgtttaatatgtattttgttatctcttcagGACTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAGgtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac Alignment from Spaln_nt2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctaggtcagtgtttaatatgtattttgttatctcttcagGACTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAGgtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac Alignment from Pairagon GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctaggtcagtgtttaatatgtattttgttatctcttcagGACTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAGgtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac Alignment from Exonerate_protein2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctaggtcagtgtttaatatgtattttgttatctcttcagGACTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAGgtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac Alignment from Exonerate_coding2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctaggtcagtgtttaatatgtattttgttatctcttcagGACTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAGgtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac Alignment from GeneWise --TTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG attttttggggctaggtcagtgtttaatatgtattttgttatctcttcagGACTGGCCTCAGGCCAGTTATACTCATATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGCTTTCTTTCCCGTCCATCAAGCCAGgtaggaactgggggggcagagatcaattgtttagtggatttgcttagcac #### Dpp3_ID738_15 --> 0 - 0 Original Alignment GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt Alignment from CESAR GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt Alignment from Spaln_aa2Genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt Alignment from Spaln_nt2Genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt Alignment from Pairagon GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt Alignment from Exonerate_protein2genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt Alignment from Exonerate_coding2genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt Alignment from GeneWise GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTCCTGCGGAGACTCCAG cccacatgcaggcccagtttgttatacacatttaatatgctctcttctagGCCCACATGCAGGCCCGGTTTGTTATACTGCGTGTTTTGCTGGAAGCTGGTGAAGGACTTGTTACTGTCACTCCCACCACAGGCTCTGATGGGTGCCCTGATGCTTGGGTCTGCCTGGAACGCAGCAAGATCCGGTCAGTGGGCAGACCCGCCCTAGAGCGGTTCCTGTGGAGACTCCAGgtaacgccatggtgtattggcagctcctctcctgtcaagtgtcaaacatt #### Dpp3_ID750_3 --> 0 - 0 Original Alignment GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga Alignment from CESAR GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga Alignment from Spaln_aa2Genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga Alignment from Spaln_nt2Genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga Alignment from Pairagon GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga Alignment from Exonerate_protein2genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga Alignment from Exonerate_coding2genome GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga Alignment from GeneWise GACAAGCTGGGACGTGTGATCCTGGGGAGTAAGGCTGCCCAGCAGCGGCCAGAAGAAGTCAGGGACCTTTGGCAGACCTGTGGGGACCTTATGTTCTCCCTGGAACCGAGGCTTCGACATCTTGGGCTGGGGAAGGAG cacttcttgcttcttgaaaatcaaggcttgtttccctttctgttccacagGACAAGCTGGGGCGTGTGATCCTGGGGAGTAAAGCTGCCCAGCAACAGCCAGGAGAAGTCAGAGACCTTTGGCAGACCTGTGGGGACCTCATGTTCTCCCTAGAACCAAGGCTTCGACATCTTGGGCTAGGGAAGGAGgtgagacctatccttcaagaacctggtaaaaactgaaggtacccttgaga #### Dpp3_ID751_2 --> 0 - 0 Original Alignment GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt Alignment from CESAR GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt Alignment from Spaln_aa2Genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt Alignment from Spaln_nt2Genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt Alignment from Pairagon GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt Alignment from Exonerate_protein2genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt Alignment from Exonerate_coding2genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt Alignment from GeneWise GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG gaggaggataaagcagttgtgacatgttagtctttgctctcgttttctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTGCCTAACCTGCCCAAAgtgagttgtcatgaaagattaaagaggggactcttgttgggttcaaaggt #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacaggATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgtgtagccaggtctgcagaagtatcattttgtgtctacaggGGCCGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacaggATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgtgtagccaggtctgcagaactaaccccttcctccctcaggGGCCGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagaagtatcattttgtgtctacagGGGCCGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagaagtatcattttgtgtctacagGGGCCGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagaagtatcattttgtgtctacagGGGCCGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagaagtatcattttgtgtctacagGGGCCGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcagaagtatcattttgtgtctacagGGGCCGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGG------------------------------------------GGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGGTGTGTAGCCAGGTCTGCAGAAGTATCATTTTGTGTCTACAGGGGCCGTA #### Dtx4_ID3404_2 --> 2 - 2 Original Alignment ggACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCgg ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaaggaACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTgggtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct Alignment from CESAR ggACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCgg ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaaggaACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTgggtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct Alignment from Spaln_aa2Genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaagGAACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTGGgtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct Alignment from Spaln_nt2Genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaagGAACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTGGgtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct Alignment from Pairagon GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaagGAACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTGGgtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct Alignment from Exonerate_protein2genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaagGAACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTGGgtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct Alignment from Exonerate_coding2genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaagGAACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTGGgtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct Alignment from GeneWise GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcccagcagggtatagggtcagacttgttttgtctttattcctgaagGAACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGTAAGGGAGTCGTGTGGGAAAGGGAGAATGACAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGCATTACCATCCAGTATGCTTATGAGAAGCAGCCCCCATGGATTGATCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGTACTATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCGGGTCAGACGACGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATTCAGTCCTGGCCAGTGAGTCCTGGACCAGCAACATCCTCCCCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAAGGCTGCTGTGGTTCATGGGGGTACAGGGCCTCCAGCAGTACGTAAGAACATGGCCCTCTCTGGAGTCGGCAAG------CAACCACCCAGTCCAGGAACAAAGCCACTAGATACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCGTTGCAGGTTATCCGAAGACAAGTTTCTAATGCTCCAGCTGGGGCAACTATAGGCTCCCCTGCCAGCCCTCAAGGAAGCAAGAGGAAGACTGGAAGGGTGGCAGTGGCTACTTTGAACAGGTCCAATCTCCAGCGACTCGCCATTGCCCAGTCCCGGGTGCTGATTGCCTGTGGgtaagtgcgacacaacagagcacttaattactaaaaattacaagcattct #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGg ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGggtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from CESAR GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGg ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGggtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Pairagon GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Exonerate_coding2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from GeneWise GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg #### Efemp2_ID1030_3 --> 2 - 1 Original Alignment atGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGg gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagatGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAggtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct Alignment from CESAR atGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGg gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagatGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAggtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct Alignment from Spaln_aa2Genome ATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGG gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagATGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAGgtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct Alignment from Spaln_nt2Genome ATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGG gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagATGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAGgtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct Alignment from Pairagon ATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGG gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagATGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAGgtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct Alignment from Exonerate_protein2genome ATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGG gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagATGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAGgtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct Alignment from Exonerate_coding2genome ATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGG gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagATGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAGgtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct Alignment from GeneWise ATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAGCCTGATGAACAGGAGAGCTGTGTGG gcctccaaagccagctaaggtgactggcaatcctgtttccaccttcttagATGTCAATGAGTGCCTGCCTATCCCAGAGGTTTGCAAGGGTGAGATGAAATGCATCAACCACTATGGAGGTTATTTGTGTCTGCCTCGTTCTGCGGCTGTTATCAGTGATCTCCATGGTGAAGGACCTCCACCACCAGCAGCCCATGCACAACAACCAAACCCTTGTCCACAGGGCTATGATCCTGACAAACAGGAGAGCTGTGTAGgtacgtgattgggtaccagtgtggatacccttgaacatggaaccccacct #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg tggccatacatgatttgcactcaccttctggattgttggcttttcctcagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCggtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg tggccatacatgatttgcactcaccttctggattgttggcttttcctcagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCggtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tggccatacatgatttgcactcaccttctggattgttggcttttcctcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tggccatacatgatttgcactcaccttctggattgttggcttttcctcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tggccatacatgatttgcactcaccttctggattgttggcttttcctcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tggccatacatgatttgcactcaccttctggattgttggcttttcctcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tggccatacatgatttgcactcaccttctggattgttggcttttcctcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG tggccatacatgatttgcactcaccttctggattgttggcttttcctcagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGgtgagcgtcacttgtgatagagcttcctcagccccctgcctccccctctt #### Efemp2_ID1036_9 --> 1 - 0 Original Alignment cCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagtCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg Alignment from CESAR cCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagtCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg Alignment from Spaln_aa2Genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagTCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg Alignment from Spaln_nt2Genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagTCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg Alignment from Pairagon CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagTCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg Alignment from Exonerate_protein2genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagTCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg Alignment from Exonerate_coding2genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagTCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg Alignment from GeneWise CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tgtggacacttgggcccaacccccatctttttcttcatgctgtcgtttagTCGTTGCCTCTGCCCTGCCTCCAACCCCCTTTGTCGAGAGCAGCCTTCGTCAATTGTACACCGTTACATGAGCATTACCTCAGAACGAAGCGTGCCTGCTGACGTTTTTCAGATACAGGCGACCTCTGTCTACCCTGGTGCCTACAATGCTTTTCAGATCCGTTCTGGCAACACTCAGGGGGACTTCTATATTAGGgtacgctgcttgctgcttatttacctacttagatgactcactaaaatagg #### Ehbp1l1_ID1218_17 --> 1 - 1 Original Alignment cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagcATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAggtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga Alignment from CESAR cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagcATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAggtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga Alignment from Spaln_aa2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAGgtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga Alignment from Spaln_nt2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAGgtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga Alignment from Pairagon CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAGgtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga Alignment from Exonerate_protein2genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAGgtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga Alignment from Exonerate_coding2genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAGgtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga Alignment from GeneWise CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG agcccaaggtgcttgcttccaaattctaggaatgccactttttgttacagCATCAAGGAGCAGGACTTGGAGCGGAGGTTTGAACTACTGAGCCGCGAGCTGCGGGCCATGCTGGCCATTGAAGgtaagtagtgtgcttgggccactggaggctggaggcggaacatgcttgga #### Ehbp1l1_ID1222_13 --> 0 - 1 Original Alignment GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCg atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGCCT---CCAGCCCCACAGCAGCCACCTggtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt Alignment from CESAR GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCg atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGCCT---CCAGCCCCACAGCAGCCACCTggtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt Alignment from Spaln_aa2Genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGCCT---CCAGCCCCACAGCAGCCACCTGgtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt Alignment from Spaln_nt2Genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGC---CTCCAGCCCCACAGCAGCCACCTGgtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt Alignment from Pairagon GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGC---CTCCAGCCCCACAGCAGCCACCTGgtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt Alignment from Exonerate_protein2genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGCCT---CCAGCCCCACAGCAGCCACCTGgtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt Alignment from Exonerate_coding2genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGCCT---CCAGCCCCACAGCAGCCACCTGgtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt Alignment from GeneWise GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG atgactttgggaactaaaggaccctggcctcttcactccttcctttacagGAAGGTCCAAACCCTGCCTCCAGCCCTGATGCCAATCCTCTGCCT---CCAGCCCCACAGCAGCCACCTGgtgagtagtttggcagatggggatggtgataaaacttgactgacaacgtt #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGGG---GTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGaggtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGGG---GTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGaggtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGGG---GTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGG---GGTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGG---GGTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc Alignment from Exonerate_protein2genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGGG---GTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc Alignment from Exonerate_coding2genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGGG---GTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG acctacatgatgatgcccctggtgcctgtttctttctccctttaatccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCCCCAGTAAGTGCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATAACTGATGGG---GTGGGGCCTGAAACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtctggatcatctcagcttcaaggctgctagaagaggataccacatatcc #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaaccatatgcccttatatgatttcatcattaactttgttctctttctagatCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAagtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaaccatatgcccttatatgatttcatcattaactttgttctctttctagatCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAagtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Exonerate_protein2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from Exonerate_coding2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaaccatatgcccttatatgatttcatcattaactttgttctctttctagATCTGTCTCGTGAGCTGAAGACACTCTGTGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtgggccctggcctgggaatggggttgcagtctgaacctacatgatgatg #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct Alignment from CESAR GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct Alignment from Spaln_aa2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct Alignment from Spaln_nt2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct Alignment from Pairagon GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct Alignment from Exonerate_protein2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct Alignment from Exonerate_coding2genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct Alignment from GeneWise GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT gttctggtgttcttcccagaaactctgttctaatcacgtctcttttccagGACCCTCATGTGGACCAGTACGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaagttactgggacagtatacctccacctccaattgagatcttaaggct #### Ehd1_ID1562_3 --> 2 - 0 Original Alignment gtTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcaggtTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa Alignment from CESAR gtTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcaggtTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa Alignment from Spaln_aa2Genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcagGTTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa Alignment from Spaln_nt2Genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcagGTTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa Alignment from Pairagon GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcagGTTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa Alignment from Exonerate_protein2genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcagGTTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa Alignment from Exonerate_coding2genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcagGTTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa Alignment from GeneWise GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtctagatcattgagttgattgagaatctgtcctctcggccgtcagGTTATGACTTCGCAGCTGTTCTCGAATGGTTTGCAGAGCGAGTGGACCGCATCATCTTGTTATTTGATGCCCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATCAAAGCGCTCAAAAATCATGAGGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGATTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCCTTCTGGTCACATCCACTACTTATCCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGACATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCTGGCTGGCTAAAgtaaggcatgtgctctgtgaatagtatctaagaggccaaggtatagccaa #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta #### Eif1ad_ID951_4 --> 1 - 2 Original Alignment gCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACag tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccaggCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACaggtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac Alignment from CESAR gCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACag tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccaggCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACaggtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac Alignment from Spaln_aa2Genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccagGCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACAGgtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac Alignment from Spaln_nt2Genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccagGCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACAGgtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac Alignment from Pairagon GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccagGCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACAGgtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac Alignment from Exonerate_protein2genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccagGCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACAGgtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac Alignment from Exonerate_coding2genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccagGCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACAGgtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac Alignment from GeneWise GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG tcctgtgagggttccctatgctccctgtatacttctcgcctgctttccagGCCTGAGGCCTTCTCTGAGGTTGCAGAGAAGCAGAACAATATGAACAGgtaagttgcatacccccagcccaaggggaggacagtaaatgccaattcac #### Eif3a_ID13312_18 --> 0 - 2 Original Alignment GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaa acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGaagtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa Alignment from CESAR GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaa acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGaagtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa Alignment from Spaln_aa2Genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa Alignment from Spaln_nt2Genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa Alignment from Pairagon GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa Alignment from Exonerate_protein2genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa Alignment from Exonerate_coding2genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa Alignment from GeneWise GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA acttgtaactataccttttgtcacgctaccatgtcctgtctttcttacagGACTCCCGTTGGGGCGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtaaggagtcttgtgagtaagaacatctttctaaaaatctttgtctggaa #### Eif3a_ID13313_17 --> 2 - 0 Original Alignment agCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagaaCGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa Alignment from CESAR agCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagaaCGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa Alignment from Spaln_aa2Genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagAACGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa Alignment from Spaln_nt2Genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagAACGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa Alignment from Pairagon AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagAACGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa Alignment from Exonerate_protein2genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagAACGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa Alignment from Exonerate_coding2genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagAACGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa Alignment from GeneWise AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtgggaagcatactgaatctacctctttaatgaccagAACGAGAAGAAAGAGAACGTGCTGAAAGAGCAAAACGGGAGGAAGAACTTAGGGAATATCAAGAACGAGTCAAGAAGCTAGAAGAAGTAGAAAGGAAAAAACGGCAAAGAGCGCTGGAAATTGAAGAGAGAGAAAGGCGCAGAGAGGATGAAAGGAGACTTGGAGATGATCTACTTCCTAGGAAGgtgagcatagatgacatctcatcatttagtctttgatactgctgtgtgaa #### Eif3a_ID13314_16 --> 0 - 1 Original Alignment GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAg ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGggtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca Alignment from CESAR GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAg ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGggtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca Alignment from Spaln_aa2Genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca Alignment from Spaln_nt2Genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca Alignment from Pairagon GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca Alignment from Exonerate_protein2genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca Alignment from Exonerate_coding2genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca Alignment from GeneWise GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcacgtctatctagaaaaatggcctacgcagtaactgttttcctcctagGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCACAGTCGCCTTGAAGATCAGGAAAGGCAGCGGAAAGAAGAACGTAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtaatggttgcaactgtaaaactgtacaggtgtgggtagtgtgttttgca #### Eif3a_ID13323_7 --> 1 - 0 Original Alignment aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagaATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact Alignment from CESAR aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagaATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact Alignment from Spaln_aa2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagAATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact Alignment from Spaln_nt2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagAATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact Alignment from Pairagon AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagAATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact Alignment from Exonerate_protein2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagAATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact Alignment from Exonerate_coding2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagAATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact Alignment from GeneWise AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG aaagaaaagcacaattatgatcttaacactctgtcttgtgcctttgacagAATGTCTACTAGAGTTCTTCTGGCAACTCTTTCCATTCCTATTACTCCTGAACGAACGGATATTGCTCGACTTTTGGATATGGATGGAATTATAGTCGAGAAGCAGCGACACCTTGCCACATTGTTAGGTCTCGAAGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaagtattggtactaagtatctttttggagaaaatgtattgtcgaaact #### Eif3a_ID13325_5 --> 2 - 0 Original Alignment ctTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagctTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt Alignment from CESAR ctTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagctTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt Alignment from Spaln_aa2Genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagCTTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt Alignment from Spaln_nt2Genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagCTTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt Alignment from Pairagon CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagCTTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt Alignment from Exonerate_protein2genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagCTTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt Alignment from Exonerate_coding2genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagCTTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt Alignment from GeneWise CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tgcaagttgtcaaaaaataacccaccctttttttttcttcgttattctagCTTTCAAATTTTGCTTACAGCATACTCGTAAGGCTGAGTACCGCAAGCTATGTGACAACCTGCAAATGCACTTATCACAGATTCAGCACCACCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAATCTATGCGTTTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATTAGTATGGAATTATGGCAAgtgagcctaactagtagcctaacattacatcaccacttttctcctctctt #### Eif3a_ID13326_4 --> 1 - 1 Original Alignment tGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAg aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagtGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAggtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt Alignment from CESAR tGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAg aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagtGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAggtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt Alignment from Spaln_aa2Genome TGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAG aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagTGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAGgtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt Alignment from Spaln_nt2Genome TGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAG aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagTGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAGgtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt Alignment from Pairagon TGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAG aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagTGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAGgtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt Alignment from Exonerate_protein2genome TGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAG aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagTGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAGgtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt Alignment from Exonerate_coding2genome TGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAG aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagTGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAGgtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt Alignment from GeneWise TGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGTACTGACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTCTTCGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAG aaaaagtgggaaatacttcaaaatagtacgtctccatccttctcccacagTGTACTTTTAAGTGCAGTAAGTGGGGAGGATACTCAGGATCGTACTGACAGATTGCTACTTACTCCCTGGGTCAAGTTCCTGTGGGAAACATATAGGCAGTGTTTGGACCTTCTTCGGAACAATTCCAGAGTAGACCGACTTTACCATGATATCACCCAACAAGgtgaggtgattagacaaactcacttgaaaggttgcttttaagtcattgtt #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac tacaattattctgccttactgggtattggacgtgtcctattcctccccagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACacgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac tacaattattctgccttactgggtattggacgtgtcctattcctccccagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACacgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC tacaattattctgccttactgggtattggacgtgtcctattcctccccagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGCCCTTCCTTGGTGACAAGAGGCACACAAACAAAAGAAGAGTTAGAGATTGTCCCTTCCTCTGGACCCCCCGGCCTAAGCAATGGTCCGCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAACCCCTCGAGCGTTCAGACACgtaaattagctagtatggatcagaaagctgattaatgggcttgacttttt #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcaggTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAggtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcaggTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAggtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtagggtcacatcttgtttccttgcctaacacttttctttcttcagGTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaatagtgcctaccccagacctgggtcctgcctggctcttcttcatcac #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagatGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagatGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa #### Eno4_ID12832_4 --> 1 - 1 Original Alignment gACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAg tcaattatagagataaagacagataaagcctggggccccgctctgcccaggACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAggtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag Alignment from CESAR gACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAg tcaattatagagataaagacagataaagcctggggccccgctctgcccaggACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAggtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag Alignment from Spaln_aa2Genome GACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAG tcaattatagagataaagacagataaagcctggggccccgctctgcccagGACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGgtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag Alignment from Spaln_nt2Genome GACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAG tcaattatagagataaagacagataaagcctggggccccgctctgcccagGACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGgtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag Alignment from Pairagon GACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAG tcaattatagagataaagacagataaagcctggggccccgctctgcccagGACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGgtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag Alignment from Exonerate_protein2genome GACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAG tcaattatagagataaagacagataaagcctggggccccgctctgcccagGACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGgtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag Alignment from Exonerate_coding2genome GACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAG tcaattatagagataaagacagataaagcctggggccccgctctgcccagGACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGgtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag Alignment from GeneWise GACCTTCTTTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCCGCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAG tcaattatagagataaagacagataaagcctggggccccgctctgcccagGACCTTCTTTGGTCATAAAGTACAAGAAGAAAAAGAGAGAAAGGAATTGGAAAAGAGCCAGGAGGAGCTGGTTCCCACACCCCCACCAGTAACACTTGCACCACCACTTCCACCACCCCCACCGCCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGgtgagcacctaggtatctccttgcacctaggcttataacagtgtcaggag #### Eno4_ID12834_6 --> 0 - 0 Original Alignment GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgttcgtgatatagaaaccctgtctacaagcagacaaacaggcaaacaata Alignment from CESAR GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgttcgtgatatagaaaccctgtctacaagcagacaaacaggcaaacaata Alignment from Spaln_aa2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgttcgtgatatagaaaccctgtctacaagcagacaaacaggcaaacaata Alignment from Spaln_nt2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgttcgtgatatagaaaccctgtctacaagcagacaaacaggcaaacaata Alignment from Pairagon GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgttcgtgatatagaaaccctgtctacaagcagacaaacaggcaaacaata Alignment from Exonerate_protein2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgttcgtgatatagaaaccctgtctacaagcagacaaacaggcaaacaata Alignment from Exonerate_coding2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAAAGTGTCGAGTTG---CTTCTGGAAATTCAGAAACAAGTTAACAGAGCGAT ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGGTTCGTGATATAGAAACCCTGTCTACAAGCAGACAAACAGGCAAACAATA Alignment from GeneWise GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctcatgtgtcctgcccaccccgcagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTAAGTTGTGGGAAGTCATCCCCTGGGAAGCTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgttcgtgatatagaaaccctgtctacaagcagacaaacaggcaaacaata #### Eno4_ID12837_9 --> 0 - 0 Original Alignment CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag Alignment from CESAR CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag Alignment from Spaln_aa2Genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag Alignment from Spaln_nt2Genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag Alignment from Pairagon CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag Alignment from Exonerate_protein2genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag Alignment from Exonerate_coding2genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag Alignment from GeneWise CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cgctcaatctcacggctttccaatatctttacctttttttttttttacagCCACCTATCACAGGTAAGGTGTCTCATGTTGGCTGTTTAACTATCAACTATGATGCCATAGGGCAGCCACTGCTGCTGCTTCAGGGGATTTGCTCAAACCTGGCGTTGGAACTAGGTGTGAACTTCCATCTAGCTGTCAACTGTGCTGGGCATGAGCTGATGGACTATgtgagtctcacctccacaaagacacctgatttacactacagagtcctcag #### Eno4_ID12840_12 --> 2 - 0 Original Alignment gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct Alignment from CESAR gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct Alignment from Spaln_aa2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct Alignment from Spaln_nt2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct Alignment from Pairagon GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct Alignment from Exonerate_protein2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct Alignment from Exonerate_coding2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct Alignment from GeneWise GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG tcttgctgtgatgaccatcctttatgaatactgtgcttctttaattacagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAGTCCTCTGATGACAGCCTTGTCGATTTGgtaagtacagtaatgatagtcaactgcataaatgtgaaccctccacttct #### Eno4_ID12842_13 --> 0 - 1 Original Alignment GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGg ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGggtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat Alignment from CESAR GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGg ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGggtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat Alignment from Spaln_aa2Genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGGgtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat Alignment from Spaln_nt2Genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGGgtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat Alignment from Pairagon GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGGgtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat Alignment from Exonerate_protein2genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGGgtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat Alignment from Exonerate_coding2genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGGgtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat Alignment from GeneWise GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG ctcagaggattaaaactaaggctccctactcccctttcctcccttcccagGCTGTAGGATTTGGTGCTTGGTTCATCAAATTGGAGGGTCTTTCTCGGGGTGAACGGTTTACCAAATACAACCGCCTTCTGGCTATAGAGGAAGAACTCATCCAAAGGGGAGTATGGGgtaagtgcaactttttgttttcctgtagccataagtaagagaacaaagat #### Entpd7_ID8795_4 --> 2 - 2 Original Alignment ggATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGag tgtatccatatattttttgttattacctgagcattttcctttttccttagggATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGaggtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc Alignment from CESAR ggATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGag tgtatccatatattttttgttattacctgagcattttcctttttccttagggATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGaggtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc Alignment from Spaln_aa2Genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatccatatattttttgttattacctgagcattttcctttttccttagGGATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGAGgtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc Alignment from Spaln_nt2Genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatccatatattttttgttattacctgagcattttcctttttccttagGGATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGAGgtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc Alignment from Pairagon GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatccatatattttttgttattacctgagcattttcctttttccttagGGATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGAGgtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc Alignment from Exonerate_protein2genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatccatatattttttgttattacctgagcattttcctttttccttagGGATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGAGgtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc Alignment from Exonerate_coding2genome GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatccatatattttttgttattacctgagcattttcctttttccttagGGATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGAGgtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc Alignment from GeneWise GGATCTCCGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTCGCTGCTGCTCATGTGCCCGTGAAGAAGCACAGGGAGACGCCCCTTTACATCCTCTGCACTGCGGGCATGAGGCTGCTCCCTGAGAG tgtatccatatattttttgttattacctgagcattttcctttttccttagGGATCTCTGCAATGGCAGACACTCCGGAACATGCTAGCGATTACCTTCGACCTCTGCTGAGCTTTGCTGCTGCCCATGTGCCTGTGAAGAAGCACAGGGAGATGCCCCTTTATATCCTCTGTACTGCAGGCATGAGGCTGCTCCCTGAGAGgtaggtctccagactttcactggatctagggaagtgagtcccctgcaggc #### Erlin1_ID8898_6 --> 2 - 0 Original Alignment atCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagatCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt Alignment from CESAR atCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagatCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt Alignment from Spaln_aa2Genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagATCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt Alignment from Spaln_nt2Genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagATCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt Alignment from Pairagon ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagATCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt Alignment from Exonerate_protein2genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagATCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt Alignment from Exonerate_coding2genome ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagATCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt Alignment from GeneWise ATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAGGTCTCACTATCCAG ggggtctctcttgactgttctgtgattttgaagttcttcaccctttttagATCAAATAGATGAAAACCTGAAGCAGGCTTTGCAAAAAGACTTGAATACAATGGCCCCAGGTCTCATGATCCAGgtaaaatactatgtatgaattgttctatacccctcataaattaatccctt #### Erlin1_ID8900_4 --> 1 - 1 Original Alignment tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagtGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCggtgagttaagtaactacagggactgtatccacggcgatttgtggttctat Alignment from CESAR tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagtGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCggtgagttaagtaactacagggactgtatccacggcgatttgtggttctat Alignment from Spaln_aa2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagTGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCGgtgagttaagtaactacagggactgtatccacggcgatttgtggttctat Alignment from Spaln_nt2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagTGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCGgtgagttaagtaactacagggactgtatccacggcgatttgtggttctat Alignment from Pairagon TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagTGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCGgtgagttaagtaactacagggactgtatccacggcgatttgtggttctat Alignment from Exonerate_protein2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagTGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCGgtgagttaagtaactacagggactgtatccacggcgatttgtggttctat Alignment from Exonerate_coding2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagTGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCGgtgagttaagtaactacagggactgtatccacggcgatttgtggttctat Alignment from GeneWise TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG agtttgggttgtatttccgtcaaacacctgttctgtttttattatggtagTGGTGGAGTCATGATCTATATTGACCGGATACAAGTGGTTAATATGTTGGCCCCTTATGCCGgtgagttaagtaactacagggactgtatccacggcgatttgtggttctat #### Exoc6_ID7371_10 --> 0 - 2 Original Alignment CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAgg tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAgggtgagtatcaaatttggatggcactagtaactatttttattctaggtgct Alignment from CESAR CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAgg tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAgggtgagtatcaaatttggatggcactagtaactatttttattctaggtgct Alignment from Spaln_aa2Genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAGGgtgagtatcaaatttggatggcactagtaactatttttattctaggtgct Alignment from Spaln_nt2Genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAGGgtgagtatcaaatttggatggcactagtaactatttttattctaggtgct Alignment from Pairagon CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAGGgtgagtatcaaatttggatggcactagtaactatttttattctaggtgct Alignment from Exonerate_protein2genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAGGgtgagtatcaaatttggatggcactagtaactatttttattctaggtgct Alignment from Exonerate_coding2genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAGGgtgagtatcaaatttggatggcactagtaactatttttattctaggtgct Alignment from GeneWise CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG tataaccttgatgctgttatttattattagctgagttctctctgcggcagCATGAAACAGTTGATGGCTATAGGAGATATTTCACTCAAATTGTAGGgtgagtatcaaatttggatggcactagtaactatttttattctaggtgct #### Exoc6_ID7374_12 --> 0 - 0 Original Alignment TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat Alignment from CESAR TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat Alignment from Spaln_aa2Genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat Alignment from Spaln_nt2Genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat Alignment from Pairagon TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat Alignment from Exonerate_protein2genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat Alignment from Exonerate_coding2genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat Alignment from GeneWise TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG atcatcaatctagtgcctgtattagttgttttgtctttgtatcctttcagTCTTACTGCACTGACCCTGACCTTGTTCTGGACCTGAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtacctaatcatctatcttattttccccatagtggtgatcaaaaatgcat #### Exoc6_ID7378_15 --> 0 - 2 Original Alignment CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAaggtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc Alignment from CESAR CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAaggtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Spaln_aa2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAAGgtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Spaln_nt2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAAGgtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Pairagon CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAAGgtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Exonerate_protein2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAAGgtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc Alignment from Exonerate_coding2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAAGgtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc Alignment from GeneWise CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG gaaaccacttagtttttaattaatctttgaaagtccttaatttattttagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACGCCGAAGgtaaagctattcgcatgaaacctgcttttataggaagtcaaaactttgtc #### Exoc6_ID7382_18 --> 0 - 0 Original Alignment GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc Alignment from CESAR GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc Alignment from Spaln_aa2Genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc Alignment from Spaln_nt2Genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc Alignment from Pairagon GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc Alignment from Exonerate_protein2genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc Alignment from Exonerate_coding2genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc Alignment from GeneWise GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT caccggcttctgttattgtttcttactgaattctgtttttctttgtctagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTgtacatatggacaatttcaaaaattgtaagattgccctctaaggtatatc #### Exoc6_ID7388_19 --> 0 - 1 Original Alignment GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAc aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGtgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat Alignment from CESAR GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAc aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGtgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat Alignment from Spaln_aa2Genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGTgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat Alignment from Spaln_nt2Genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGTgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat Alignment from Pairagon GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGTgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat Alignment from Exonerate_protein2genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGTgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat Alignment from Exonerate_coding2genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGTgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat Alignment from GeneWise GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC aatgtatttcaatgtttgctattaacagatgttgttttctgccatgccagGGAAAAGTTGCCCAGGCAGCATGTATGTCAGCATGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGCTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTCGATGTCATACAGTGTGAGTgtatgcatagatcacataactcccctagtgtgagtgtcgctatagatcat #### Exosc1_ID8333_6 --> 0 - 0 Original Alignment GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca Alignment from CESAR GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca Alignment from Spaln_aa2Genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca Alignment from Spaln_nt2Genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca Alignment from Pairagon GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca Alignment from Exonerate_protein2genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca Alignment from Exonerate_coding2genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca Alignment from GeneWise GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ttaacccacactgaaccaatccaatgagcccccccctctgtctgtcaaagGTAGAAATTTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAAGTTgtaaggttttatggtaactgcgtgcttattggcctttctagaaattcaca #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggactggagccaggccatggctgccctgcgtgagcttcctttgtccccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACATCAATGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtaagggagattattttgttctcccaagcttcagtcattcgtggtttctc #### Fads2_ID2674_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACcagtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACcagtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACCAgtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACCAgtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACCAgtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACCAgtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACCAgtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA agcaccaggtagcttatacaccatccactggttttatttcctttttatagCTGGCAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGACTGGTTTAGCGGGCACCTCAATTTCCAGATTGAGCACCAgtgaggatggcccatcaacgtagggggtatgtagggaaggtgagagagta #### Fads2_ID2676_8 --> 0 - 2 Original Alignment GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCag tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCcggtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat Alignment from CESAR GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCag tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCcggtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat Alignment from Spaln_aa2Genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCCGgtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat Alignment from Spaln_nt2Genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCCGgtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat Alignment from Pairagon GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCCGgtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat Alignment from Exonerate_protein2genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCCGgtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat Alignment from Exonerate_coding2genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCCGgtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat Alignment from GeneWise GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggtggggcaggacaagcctagattccttccacttccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCTTGGGAGCCTTGGTTTTCCTTAACTTCATCCGgtatgtcaatgggattacaatgtcgcccttgaaccaatcatgggagtaat #### Fads3_ID2661_4 --> 0 - 0 Original Alignment GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from CESAR GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Spaln_aa2Genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Spaln_nt2Genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Pairagon GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Exonerate_protein2genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Exonerate_coding2genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from GeneWise GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACtagtgagcgtggcatggaggggttacttggtggggtccagacctagagctga Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACtagtgagcgtggcatggaggggttacttggtggggtccagacctagagctga Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACTAgtgagcgtggcatggaggggttacttggtggggtccagacctagagctga Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACTAgtgagcgtggcatggaggggttacttggtggggtccagacctagagctga Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACTAgtgagcgtggcatggaggggttacttggtggggtccagacctagagctga Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACTAgtgagcgtggcatggaggggttacttggtggggtccagacctagagctga Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACTAgtgagcgtggcatggaggggttacttggtggggtccagacctagagctga Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctccatactctctctctttgcttctcagTTGGCAGCCACCTGCAATGTGGAGTCATCACTCTTTATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACTAgtgagcgtggcatggaggggttacttggtggggtccagacctagagctga #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacaggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacaggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG tccctatgtccaaacttgtgtgcctttaaactctccctttccccttacagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgagtgcttgttattatattcatagtgcttgtggttattgagccaaacc #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga #### Fam160b1_ID12362_13 --> 1 - 0 Original Alignment tTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagtTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac Alignment from CESAR tTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagtTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac Alignment from Spaln_aa2Genome TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagTTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac Alignment from Spaln_nt2Genome TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagTTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac Alignment from Pairagon TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagTTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac Alignment from Exonerate_protein2genome TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagTTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac Alignment from Exonerate_coding2genome TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagTTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac Alignment from GeneWise TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG taaaaacattttgaggtctattacttataggctcccacttgccctggcagTTTTCTCTGCCTAGTGCAAGATGATGTAAAGTCCTTCTACCATGTAGAGGGTACCGGTTATGAGACTTACCTCCGAGATGCCCACAGGCAGgtaaacggattgactgattcagtaggggacctgggggtgcaaatggacac #### Fam160b1_ID12363_14 --> 0 - 0 Original Alignment TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg Alignment from CESAR TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg Alignment from Spaln_aa2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg Alignment from Spaln_nt2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg Alignment from Pairagon TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg Alignment from Exonerate_protein2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg Alignment from Exonerate_coding2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg Alignment from GeneWise TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tccacttgtttcttggctgctcttcaattttctttggttcattctctcagTTCCGAGATTTCTGTGCTATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTCTTGAAAGTTTTATATGACAGGATGGGAAGAAATCTTGATCAAgtaccgttttggaagtgtcaatcttcatcgtcttgtggataaccccaggg #### Fam160b1_ID12364_15 --> 0 - 0 Original Alignment CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca Alignment from CESAR CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca Alignment from Spaln_aa2Genome CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca Alignment from Spaln_nt2Genome CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca Alignment from Pairagon CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca Alignment from Exonerate_protein2genome CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca Alignment from Exonerate_coding2genome CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca Alignment from GeneWise CCGTACGATGTGAATCTGCAGGTGACCTCAGTGCTGTCCAGACTCTCGCTGTTCCCTCACCCACACACGCACGAGTACCTCCTGGATCCTTACATCAACCTGGCCTCTGGCTGCAGGTCTCTCTTCTCTGTGATTGTCAGG gctagctttcctaactacagacacaaccccaatcgcgctcctgcaatcagCCGTACGATGTGAATCTGCATGTTACCTCAGTGCTATCCAGACTCTCACTTTTCCCCCACCCACACACACATGAATACCTCCTGGATCCTTATATAAACCTTGCATCTGGCTGCAGGCCTCTCTTCTCTGTGATTGTCAGGgtgagttcattgatgttatgttcttttgagatcagtcatctgtgcaagca #### Fam178a_ID9219_2 --> 1 - 1 Original Alignment gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg atgacattattgtagctaatgacgtattacttgtgcctttatctgtccaggAAACAGTCAATCATAGATTTTTTCAAGCCAGCTGCAAAACAAggtactgatgttaatgcaattttgattggtgtgaccttttctggcacgtct Alignment from CESAR gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg atgacattattgtagctaatgacgtattacttgtgcctttatctgtccaggAAACAGTCAATCATAGATTTTTTCAAGCCAGCTGCAAAACAAggtactgatgttaatgcaattttgattggtgtgaccttttctggcacgtct Alignment from Spaln_aa2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG atgacattattgtagctaatgacgtattacttgtgcctttatctgtccagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCTGCAAAACAAGgtactgatgttaatgcaattttgattggtgtgaccttttctggcacgtct Alignment from Spaln_nt2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG atgacattattgtagctaatgacgtattacttgtgcctttatctgtccagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCTGCAAAACAAGgtactgatgttaatgcaattttgattggtgtgaccttttctggcacgtct Alignment from Pairagon GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG atgacattattgtagctaatgacgtattacttgtgcctttatctgtccagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCTGCAAAACAAGgtactgatgttaatgcaattttgattggtgtgaccttttctggcacgtct Alignment from Exonerate_protein2genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG atgacattattgtagctaatgacgtattacttgtgcctttatctgtccagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCTGCAAAACAAGgtactgatgttaatgcaattttgattggtgtgaccttttctggcacgtct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG atgacattattgtagctaatgacgtattacttgtgcctttatctgtccagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCTGCAAAACAAGgtactgatgttaatgcaattttgattggtgtgaccttttctggcacgtct #### Fam178a_ID9228_9 --> 1 - 0 Original Alignment aTCAGGAAAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTTCGG acaatcctgcatgtttccatgggtaagatttattctaatatttatcctaggTCAGGAAAAACGGATCAGATCTTTCTAACAACACAAGGCTTCATTACCACTGCATATCACTATGTGCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTGCGGgtaacataatctacgaagggcggatagcagatatctacagcttgtctaca Alignment from CESAR aTCAGGAAAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTTCGG acaatcctgcatgtttccatgggtaagatttattctaatatttatcctaggTCAGGAAAAACGGATCAGATCTTTCTAACAACACAAGGCTTCATTACCACTGCATATCACTATGTGCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTGCGGgtaacataatctacgaagggcggatagcagatatctacagcttgtctaca Alignment from Spaln_aa2Genome ATCAGGAAAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTTCGG acaatcctgcatgtttccatgggtaagatttattctaatatttatcctagGTCAGGAAAAACGGATCAGATCTTTCTAACAACACAAGGCTTCATTACCACTGCATATCACTATGTGCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTGCGGgtaacataatctacgaagggcggatagcagatatctacagcttgtctaca Alignment from Spaln_nt2Genome ATCAGGAAAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTTCGG acaatcctgcatgtttccatgggtaagatttattctaatatttatcctagGTCAGGAAAAACGGATCAGATCTTTCTAACAACACAAGGCTTCATTACCACTGCATATCACTATGTGCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTGCGGgtaacataatctacgaagggcggatagcagatatctacagcttgtctaca Alignment from Pairagon ATCAGGAAAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTTCGG acaatcctgcatgtttccatgggtaagatttattctaatatttatcctagGTCAGGAAAAACGGATCAGATCTTTCTAACAACACAAGGCTTCATTACCACTGCATATCACTATGTGCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTGCGGgtaacataatctacgaagggcggatagcagatatctacagcttgtctaca Alignment from Exonerate_protein2genome ATCAGGAAAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTTCGG acaatcctgcatgtttccatgggtaagatttattctaatatttatcctagGTCAGGAAAAACGGATCAGATCTTTCTAACAACACAAGGCTTCATTACCACTGCATATCACTATGTGCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTGCGGgtaacataatctacgaagggcggatagcagatatctacagcttgtctaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCAGGAAAAACAGATCAGATTTTTTTGACAACACAAGGCTTCCTTACCACTGCATATCACTACGTCCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTTCGG acaatcctgcatgtttccatgggtaagatttattctaatatttatcctagGTCAGGAAAAACGGATCAGATCTTTCTAACAACACAAGGCTTCATTACCACTGCATATCACTATGTGCAATGTCCTGTACCTGTGTTAAAGTGGCTGTTGCGGgtaacataatctacgaagggcggatagcagatatctacagcttgtctaca #### Fam178a_ID9233_14 --> 0 - 2 Original Alignment GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAag tcgtgtttattttatgcacgtctgattttaacattattcattcttctcagGTGCATGAACTTTGTCTGGGGATTAATGAACTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAACTAGTGCCTAACTGGACATCTCGTGGCaggtgagcatgataaacactaatctacttgaaattgatgacacttgatatat Alignment from CESAR GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAag tcgtgtttattttatgcacgtctgattttaacattattcattcttctcagGTGCATGAACTTTGTCTGGGGATTAATGAACTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAACTAGTGCCTAACTGGACATCTCGTGGCaggtgagcatgataaacactaatctacttgaaattgatgacacttgatatat Alignment from Spaln_aa2Genome GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcgtgtttattttatgcacgtctgattttaacattattcattcttctcagGTGCATGAACTTTGTCTGGGGATTAATGAACTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAACTAGTGCCTAACTGGACATCTCGTGGCAGgtgagcatgataaacactaatctacttgaaattgatgacacttgatatat Alignment from Spaln_nt2Genome GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcgtgtttattttatgcacgtctgattttaacattattcattcttctcagGTGCATGAACTTTGTCTGGGGATTAATGAACTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAACTAGTGCCTAACTGGACATCTCGTGGCAGgtgagcatgataaacactaatctacttgaaattgatgacacttgatatat Alignment from Pairagon GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcgtgtttattttatgcacgtctgattttaacattattcattcttctcagGTGCATGAACTTTGTCTGGGGATTAATGAACTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAACTAGTGCCTAACTGGACATCTCGTGGCAGgtgagcatgataaacactaatctacttgaaattgatgacacttgatatat Alignment from Exonerate_protein2genome GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcgtgtttattttatgcacgtctgattttaacattattcattcttctcagGTGCATGAACTTTGTCTGGGGATTAATGAACTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAACTAGTGCCTAACTGGACATCTCGTGGCAGgtgagcatgataaacactaatctacttgaaattgatgacacttgatatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcgtgtttattttatgcacgtctgattttaacattattcattcttctcagGTGCATGAACTTTGTCTGGGGATTAATGAACTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAACTAGTGCCTAACTGGACATCTCGTGGCAGgtgagcatgataaacactaatctacttgaaattgatgacacttgatatat #### Fam178a_ID9236_17 --> 0 - 0 Original Alignment GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggtctgttccttttattctcccagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtacctcgtaattagttttattgtaaattattcttgtcattgcgacagag Alignment from CESAR GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggtctgttccttttattctcccagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtacctcgtaattagttttattgtaaattattcttgtcattgcgacagag Alignment from Spaln_aa2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggtctgttccttttattctcccagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtacctcgtaattagttttattgtaaattattcttgtcattgcgacagag Alignment from Spaln_nt2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggtctgttccttttattctcccagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtacctcgtaattagttttattgtaaattattcttgtcattgcgacagag Alignment from Pairagon GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggtctgttccttttattctcccagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtacctcgtaattagttttattgtaaattattcttgtcattgcgacagag Alignment from Exonerate_protein2genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggtctgttccttttattctcccagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtacctcgtaattagttttattgtaaattattcttgtcattgcgacagag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggtctgttccttttattctcccagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtacctcgtaattagttttattgtaaattattcttgtcattgcgacagag #### Fam178a_ID9238_19 --> 0 - 0 Original Alignment GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG actaaattgagtcaagtgtgtgatctgatttcaaaacctgctctctacagGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAGgtgtgtatctttttgagttttacttatagaatctcctgcaattctagagt Alignment from CESAR GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG actaaattgagtcaagtgtgtgatctgatttcaaaacctgctctctacagGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAGgtgtgtatctttttgagttttacttatagaatctcctgcaattctagagt Alignment from Spaln_aa2Genome GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG actaaattgagtcaagtgtgtgatctgatttcaaaacctgctctctacagGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAGgtgtgtatctttttgagttttacttatagaatctcctgcaattctagagt Alignment from Spaln_nt2Genome GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG actaaattgagtcaagtgtgtgatctgatttcaaaacctgctctctacagGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAGgtgtgtatctttttgagttttacttatagaatctcctgcaattctagagt Alignment from Pairagon GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG actaaattgagtcaagtgtgtgatctgatttcaaaacctgctctctacagGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAGgtgtgtatctttttgagttttacttatagaatctcctgcaattctagagt Alignment from Exonerate_protein2genome GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG actaaattgagtcaagtgtgtgatctgatttcaaaacctgctctctacagGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAGgtgtgtatctttttgagttttacttatagaatctcctgcaattctagagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAG actaaattgagtcaagtgtgtgatctgatttcaaaacctgctctctacagGTGAAAGACTTGGTTGCCAGAATACATGGAAAATGGCAGGAAATAATTCAGAACTGTCGGCCTACTCAGgtgtgtatctttttgagttttacttatagaatctcctgcaattctagagt #### Fam45a_ID13334_2 --> 2 - 0 Original Alignment aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagaaAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca Alignment from CESAR aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagaaAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca Alignment from Spaln_aa2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca Alignment from Spaln_nt2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca Alignment from Pairagon AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca Alignment from Exonerate_protein2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca Alignment from Exonerate_coding2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca Alignment from GeneWise AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG aatcaatccactacttattggttctggtggtttcctttggactctttcagAAAATGACTCTAATGGAGAAGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGAGAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACAGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtaaggttagtcaagacagaaagaaaagacaaaataaaatgcacaagaca #### Fam45a_ID13335_3 --> 0 - 2 Original Alignment GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTag accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTaggtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca Alignment from CESAR GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTag accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTaggtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca Alignment from Spaln_aa2Genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTAGgtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca Alignment from Spaln_nt2Genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTAGgtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca Alignment from Pairagon GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTAGgtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca Alignment from Exonerate_protein2genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTAGgtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca Alignment from Exonerate_coding2genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTAGgtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca Alignment from GeneWise GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG accttgcctttgatccaaaagggttgattgtggtgttcctgtgtccctagGTGACTCATTTTTCTATTGTTCTGACTGCTAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATACTGTGTAGgtatgtatacaaactatgctgagtgcgaatttaccaaaatagagatctca #### Fam45a_ID13338_6 --> 1 - 1 Original Alignment gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagaACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAggtacagggaaatatccagggggagaaatattccgcatacatagattggtg Alignment from CESAR gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagaACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAggtacagggaaatatccagggggagaaatattccgcatacatagattggtg Alignment from Spaln_aa2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagAACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtacagggaaatatccagggggagaaatattccgcatacatagattggtg Alignment from Spaln_nt2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagAACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtacagggaaatatccagggggagaaatattccgcatacatagattggtg Alignment from Pairagon GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagAACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtacagggaaatatccagggggagaaatattccgcatacatagattggtg Alignment from Exonerate_protein2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagAACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtacagggaaatatccagggggagaaatattccgcatacatagattggtg Alignment from Exonerate_coding2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagAACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtacagggaaatatccagggggagaaatattccgcatacatagattggtg Alignment from GeneWise GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG ctatgaaaccttaacaaatagataacagccaatgggtcctctgcccacagAACTCTGCCTGCCCTAGTGTGGCATCGACAGGACTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtacagggaaatatccagggggagaaatattccgcatacatagattggtg #### Fas_ID6921_2 --> 0 - 1 Original Alignment GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTg tttttgccatattgcttggtgcagaaattcatatgtctccttccccacagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTggtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc Alignment from CESAR GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTg tttttgccatattgcttggtgcagaaattcatatgtctccttccccacagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTggtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc Alignment from Spaln_aa2Genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG tttttgccatattgcttggtgcagaaattcatatgtctccttccccacagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc Alignment from Spaln_nt2Genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG tttttgccatattgcttggtgcagaaattcatatgtctccttccccacagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc Alignment from Pairagon GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG tttttgccatattgcttggtgcagaaattcatatgtctccttccccacagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc Alignment from Exonerate_protein2genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG tttttgccatattgcttggtgcagaaattcatatgtctccttccccacagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc Alignment from Exonerate_coding2genome GTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG tttttgccatattgcttggtgcagaaattcatatgtctccttccccacagGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc Alignment from GeneWise CTGTGGATCTGGGCTGTCCTGCCTCTGGTGCTTGCTGGCTCACAGTTAAGAGTTCATACTCAAGGTACTAATAGCATCTCCGAGAGTTTAAAGCTGAGGAGGCGGGTTCGTGAAACTGATAAAAACTGCTCAGAAGGATTATATCAAGGAGGCCCATTTTGCTGTCAACCATGCCAACCTG tattgcttggtgcagaaattcat---------ATGTCTCCTTCCCCACAGGTGCTTGCTGGCTCACAATTAAGGGTTCATACTCAAGGTACTAACAGCATCTCTGAGAGTTTAAAACTAAGGAGGAGGGTTCGTGAAACTGATAAAAACTGTTCAGAAGGACTATACCAAGGAGGTCCATTTTGCTGTCAACCATGTCAACCTGgtaggacacaaaataaatggatatggtagggtgtgttggcactattatcc #### Fas_ID6927_8 --> 0 - 1 Original Alignment GAAACCATACCAATGAATGCCTCAa tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcagGAAACTATACCAATGAAAGCCTCAagtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt Alignment from CESAR GAAACCATACCAATGAATGCCTCAa tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcagGAAACTATACCAATGAAAGCCTCAagtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt Alignment from Spaln_aa2Genome GAAACCATACCAATGAATGCCTCAA tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcagGAAACTATACCAATGAAAGCCTCAAgtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt Alignment from Spaln_nt2Genome GAAACCATACCAATGAATGCCTCAA tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcagGAAACTATACCAATGAAAGCCTCAAgtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt Alignment from Pairagon GAAACCATACCAATGAATGCCTCAA tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcagGAAACTATACCAATGAAAGCCTCAAgtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt Alignment from Exonerate_protein2genome GAAACCATACCAATGAATGCCTCAA tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcagGAAACTATACCAATGAAAGCCTCAAgtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt Alignment from Exonerate_coding2genome tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcaggaaactataccaatgaaagcctcaagtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt Alignment from GeneWise tgacatctgtgtatgccctctctctcttgtgtgtgttctcgttctcgcaggaaactataccaatgaaagcctcaagtatgtcgtttcattatcttatttacagaaatggccttcaactgccagtt #### Fbxl15_ID9851_3 --> 0 - 2 Original Alignment GTG---GGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCag gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCaggtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca Alignment from CESAR ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCag gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCaggtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca Alignment from Spaln_aa2Genome GTGGGTCCACAG---ATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca Alignment from Spaln_nt2Genome GTGGGTCCACAGATT---CCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca Alignment from Pairagon ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca Alignment from Exonerate_protein2genome ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca Alignment from Exonerate_coding2genome ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca Alignment from GeneWise ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gtgacgccaggcaaaggcccagactcatacgacgctgtttttcctctcagGTAGTAGGCCCACAGATTCCACGAGCGACACTGGCCCGGCTACTCCGGGATGCTGAGGGACTTCAGAAGTTGGCACTGGCTCCATGTCACAAATGGCTGTCAGACGAAGACCTCGTGCCAGTGCTTGCACGGAACCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGAGACCTCGGAGCGCTGGCTGAGGGCTGCCCACCCCTACAGTGCCTTTCCCTTGCCCACTGTGACTGGGTGGATGGGCTAGCTCTGCGTGGCCTTGCTGACCGCTGCCCGGCTTTGGAGGAGCTAGACCTTACTGCCTGTCGTCAACTCAAGGATGAAGCGATTGTGTACCTTGCACAGAGACGCGGTGCAGGCCTACACGGCCTCTCATTAGCAGTCAATGCCAATGTTGGGGACACTGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTAGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtactggaaaatggggactgtggtactatcaggagtgggtagtcatttca #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatccgggggccctctagggttttacttgatatggctctttgtctccagtgAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAaggtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatccgggggccctctagggttttacttgatatggctctttgtctccagtgAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAaggtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatccgggggccctctagggttttacttgatatggctctttgtctccagTGAATGATGCAGTGGCTCTTCGTGTGCGTTCTGGCATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTACATCCGCCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGATTCCTCCTGCCCGCCAGACACTCCTCATCGAAAGgtaaggaacagggtggttggtggggtgggtactggcaggggtgtcatcag #### Fibp_ID1007_4 --> 0 - 2 Original Alignment TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCag aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCaggtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg Alignment from CESAR TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCag aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCaggtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg Alignment from Spaln_aa2Genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg Alignment from Spaln_nt2Genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg Alignment from Pairagon TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg Alignment from Exonerate_protein2genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg Alignment from Exonerate_coding2genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg Alignment from GeneWise TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG aaggagcagcatgggtgtcaattgtccgcctccctgctctctgtgcccagTATGACAACTTTAAACGAATTTTCAAGGTGGTGGAGGAAATGAGGGGTTCCCTGGTGGACAACATCCAGCAGCACCTCCTCCTCTCTGACCGGTTAGCCAGgtaagtgtcactgctcccttgctgattgtatagtcaacaaatgagggctg #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc #### Fra10ac1_ID7565_5 --> 1 - 2 Original Alignment gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg aaattagttaaatttaggctaaatattgcttcactctgcctctttctaaggGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTtggtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg Alignment from CESAR gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg aaattagttaaatttaggctaaatattgcttcactctgcctctttctaaggGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTtggtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg Alignment from Spaln_aa2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaattagttaaatttaggctaaatattgcttcactctgcctctttctaagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg Alignment from Spaln_nt2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaattagttaaatttaggctaaatattgcttcactctgcctctttctaagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg Alignment from Pairagon GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaattagttaaatttaggctaaatattgcttcactctgcctctttctaagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg Alignment from Exonerate_protein2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaattagttaaatttaggctaaatattgcttcactctgcctctttctaagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg Alignment from Exonerate_coding2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaattagttaaatttaggctaaatattgcttcactctgcctctttctaagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg Alignment from GeneWise GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG aaattagttaaatttaggctaaatattgcttcactctgcctctttctaagGGAGAATGATAAGACAGATCTTGATGTTATACGAGAAAATCATAGGTTCCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtatgattacttgattatgtattggcagtgggtgagtgtgtgtatgtgtg #### Frmd8_ID1281_7 --> 1 - 0 Original Alignment gTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcaggTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag Alignment from CESAR gTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcaggTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag Alignment from Spaln_aa2Genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcagGTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag Alignment from Spaln_nt2Genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcagGTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag Alignment from Pairagon GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcagGTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag Alignment from Exonerate_protein2genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcagGTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag Alignment from Exonerate_coding2genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcagGTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag Alignment from GeneWise GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG tagtggctatttttacaagagggagtagtacatttctccactcatttcagGTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGATTCCTTCATCGAGGTGGGCGCAAACCAGTAACTGTGGCCATCAGTCTGGAGGGTGTGCACATCATTGACAACAGGGAGAAGgtaagtctgttgcgttcagcccttcaggcaggactgcctggtctgtagag #### Frmd8_ID1285_3 --> 2 - 1 Original Alignment agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGg atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagagGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAC---------ATGggtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac Alignment from CESAR agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGg atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagagGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAC---------ATGggtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac Alignment from Spaln_aa2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAC---------ATGGgtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac Alignment from Spaln_nt2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGA---------CATGGgtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac Alignment from Pairagon AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGA---------CATGGgtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac Alignment from Exonerate_protein2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAC---------ATGGgtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac Alignment from Exonerate_coding2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAC---------ATGGgtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac Alignment from GeneWise AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatgaaaatgtttgctgggcagggagccctgtctgtcttgtctagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGCTGTTGCGCTTCACAAAAGCTTCTGATGAC---------ATGGgtgagtatcttggaccagggtgctttaaaggaggctttagaagggtagac #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagggACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagggACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaaatcccgctggcgatgaagcagtcatataggcaaagatatttttttt Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaaatcccgctggcgatgaagcagtcatataggcaaagatattcctctc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttttttt Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttttttt Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttttttt Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttttttt Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttttttt Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagcctcaacgatttcggcctgactgttttatcttcagCTAGTGGCTACTGTGGACCCCCATATCAAGGTTAAGGTAGACTCTGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACGTTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaaatcccgctggcgatgaagcagtcatataggcaaagatatttttttt #### Ganab_ID2475_14 --> 2 - 0 Original Alignment gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcaggcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from CESAR gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcaggcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Spaln_aa2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Spaln_nt2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Pairagon GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Exonerate_protein2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Exonerate_coding2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from GeneWise --GGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagCAGGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta #### Gbf1_ID9778_3 --> 2 - 1 Original Alignment aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagaaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAggtgggcacttaggctttgatggctctgcagcactccatctcccggggcat Alignment from CESAR aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagaaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAggtgggcacttaggctttgatggctctgcagcactccatctcccggggcat Alignment from Spaln_aa2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAGgtgggcacttaggctttgatggctctgcagcactccatctcccggggcat Alignment from Spaln_nt2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAGgtgggcacttaggctttgatggctctgcagcactccatctcccggggcat Alignment from Pairagon AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAGgtgggcacttaggctttgatggctctgcagcactccatctcccggggcat Alignment from Exonerate_protein2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAGgtgggcacttaggctttgatggctctgcagcactccatctcccggggcat Alignment from Exonerate_coding2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAGgtgggcacttaggctttgatggctctgcagcactccatctcccggggcat Alignment from GeneWise AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG tctcccagggatgtccttggcttacatgtctgttttctgctgaacatcagAACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTCATTCATTCTGAAGACACCACTGGCCCTATCACTGGGCTGGCGCTTACCTCTGCCAACAAGTTCCTGTCTTACACGCTCATAGgtgggcacttaggctttgatggctctgcagcactccatctcccggggcat #### Gbf1_ID9786_7 --> 1 - 0 Original Alignment gTTACCTCAGTTTAAAGAA---GAACCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtaggTTACCTCAGTTCAAAGAAGAAGAGCCC---AGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt Alignment from CESAR gTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtaggTTACCTCAGTTCAAAGAAGAAGAGCCCAGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt Alignment from Spaln_aa2Genome GTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtagGTTACCTCAGTTCAAAGAAGAAGAGCCCAGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt Alignment from Spaln_nt2Genome GTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtagGTTACCTCAGTTCAAAGAAGAAGAGCCCAGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt Alignment from Pairagon GTTACCTCAGTTTAAAGAAGAA---CCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtagGTTACCTCAGTTCAAAGAAGAAGAGCCC---AGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt Alignment from Exonerate_protein2genome GTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtagGTTACCTCAGTTCAAAGAAGAAGAGCCCAGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt Alignment from Exonerate_coding2genome GTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtagGTTACCTCAGTTCAAAGAAGAAGAGCCCAGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt Alignment from GeneWise GTTACCTCAGTTTAAAGAAGAACCCAAGAGCTATGTGGGAACCAACATGAAGAAG gaacattgttacaatacccagtggcagggcatatgcgtttgtctttgtagGTTACCTCAGTTCAAAGAAGAAGAGCCCAGCTATGTGGGGTCCAACATGAAGAAAgtgagcttcaaatttggtctgctgttagcttctgaattcagtactgtttt #### Gbf1_ID9794_13 --> 0 - 0 Original Alignment ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGGCTGTTATTCAGCTCTGGCGTATCCCCAGCTCTGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGTTCCAACCTCTTA---GACCTCACTAAGCTGCTGTCTAAGgttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa Alignment from CESAR ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGGCTGTTATTCAGCTCTGGCGTATCCCCAGCTCTGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGTTCCAACCTCTTA---GACCTCACTAAGCTGCTGTCTAAGgttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa Alignment from Spaln_aa2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGgctgttattcagctctggcgtatccccagctctgtcactgagctctacatcaactatgattgtgactactattgttccaacctcttagacctcactaagctgctgtctaaggttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa Alignment from Spaln_nt2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGgctgttattcagctctggcgtatccccagctctgtcactgagctctacatcaactatgattgtgactactattgttccaacctcttagacctcactaagctgctgtctaaggttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa Alignment from Pairagon ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGGCTGTTATTCAGCTCTGGCGTATCCCCAGCTCTGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGTTCCAACCTCTT---AGACCTCACTAAGCTGCTGTCTAAGgttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa Alignment from Exonerate_protein2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGGCTGTTATTCAGCTCTGGCGTATCCCCAGCTCTGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGTTCCAACCTCTTA---GACCTCACTAAGCTGCTGTCTAAGgttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa Alignment from Exonerate_coding2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGGCTGTTATTCAGCTCTGGCGTATCCCCAGCTCTGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGTTCCAACCTCTTA---GACCTCACTAAGCTGCTGTCTAAGgttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa Alignment from GeneWise ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG tgtttactctgttgtgaaccagatggctatgttctctgtctaccttccagATGTATATCAAAAGGCTGATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGTCACTGGAGGCTGTTATTCAGCTCTGGCGTATCCCCAGCTCTGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGTTCCAACCTCTTA---GACCTCACTAAGCTGCTGTCTAAGgttggtagtgcttaccttaaggaactgtgaagcaatttttattgatagaa #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccaggAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccaggAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccaggaGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccaggaGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccagGAGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccagGAGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccagGAGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccagGAGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccagGAGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagcttgtactctcatttttcttgtccatctccagGAGCACAGTCAGACAGTGAAATCCCTTTCTACCATCAAAATGATGTCAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCATGGAAGGCCTGGCAAAATACATCGGTCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTGGTGgtaatcctcctctcattttaggtaaacaaatgggttttagttctcagaga #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg #### Gif_ID3280_4 --> 2 - 1 Original Alignment gcCCGGGTGCTGAATCCTCG---GCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGg agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcaggcCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGggttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag Alignment from CESAR gcCCGGGTGCTGAATCC---TCGGCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGg agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcaggcCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGggttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag Alignment from Spaln_aa2Genome GCCCGGGTGCTGAA---TCCTCGGCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGG agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcagGCCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGGgttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag Alignment from Spaln_nt2Genome GCCCGGGTGCTGAA---TCCTCGGCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGG agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcagGCCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGGgttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag Alignment from Pairagon GCCCGGGTGCTGAATCC---TCGGCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGG agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcagGCCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGGgttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag Alignment from Exonerate_protein2genome GCCCGGGTGCTGAA---TCCTCGGCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGG agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcagGCCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGGgttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag Alignment from Exonerate_coding2genome GCCCGGGTGCTGAA---TCCTCGGCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGG agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcagGCCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGGgttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag Alignment from GeneWise --CCGGGTGCTGAATCC---TCGGCCTTCTATGGGCCTGGTTTGGCGATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCGACCTTACCCATCGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGG agtctccagtgcaccaggtgctaatcaaaatatacgtcatgtgattgcagGCCCGGGTGCTGAATCCTCATCAGCCTTCTATGGGCCTGGTTTGGCTATCCTCGCACTGTGCCAGAAGAGTTCAGAGGCAATCTTACCCATTGCAGTGCGCTTCGCTAAGACCCTGATGATGGAACCCTCTCCCTTCAATGTGGgttggttgttgctatcagatcctaggcacagagtatcagggtggtcacag #### Gldc_ID6390_24 --> 0 - 0 Original Alignment ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc Alignment from CESAR ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc Alignment from Spaln_aa2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc Alignment from Spaln_nt2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc Alignment from Pairagon ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc Alignment from Exonerate_protein2genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc Alignment from Exonerate_coding2genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc Alignment from GeneWise ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG catgagagaagatagcacactgaaactgatcagcttccttgtctttgcagATGTCTCCACATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGAGAGGTAGTTGCATTTCCACTGgtaggccctctaaatgaattgatcccacaatggtgtcattttaagcaggc #### Gldc_ID6392_22 --> 2 - 1 Original Alignment ggTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATg gaattgagccaatacaatccttatcttctaaaacatttttattttaacagggTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATggtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa Alignment from CESAR ggTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATg gaattgagccaatacaatccttatcttctaaaacatttttattttaacagggTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATggtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa Alignment from Spaln_aa2Genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaattgagccaatacaatccttatcttctaaaacatttttattttaacagGGTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa Alignment from Spaln_nt2Genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaattgagccaatacaatccttatcttctaaaacatttttattttaacagGGTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa Alignment from Pairagon GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaattgagccaatacaatccttatcttctaaaacatttttattttaacagGGTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa Alignment from Exonerate_protein2genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaattgagccaatacaatccttatcttctaaaacatttttattttaacagGGTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa Alignment from Exonerate_coding2genome GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaattgagccaatacaatccttatcttctaaaacatttttattttaacagGGTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa Alignment from GeneWise GGTATGTGGCTCATGAGTTTATCTTGGACACCCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATG gaattgagccaatacaatccttatcttctaaaacatttttattttaacagGGTATGTGGCTCATGAGTTTATCTTAGACACTCGACCCTTCAAAAAGTCTGCCAATGTTGAGGCTGTGGATGTTGCCAAGAGGCTCCAGGATTATGgtatgtcatgttggaaagtcacgcagttgtgcctctaatctatggaccaa #### Gldc_ID6400_15 --> 0 - 2 Original Alignment CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACaggtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt Alignment from CESAR CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACaggtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt Alignment from Spaln_aa2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACAGgtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt Alignment from Spaln_nt2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACAGgtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt Alignment from Pairagon CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACAGgtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt Alignment from Exonerate_protein2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACAGgtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt Alignment from Exonerate_coding2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACAGgtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt Alignment from GeneWise CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgaaatgagtcaaactcacacatgcttattttctgtgtctttcttcttagCCCATCACCTGGAGAGAATTTGCCAACATCTACCCCTTTGTGCCACTAGATCAAGCCCAGGGGTACCAACAACTTTTCCAAGGGCTGGAGAAAGATCTGTGCGAGATCACAGGCTATGACCAAGTCTCATTCCAGTCGAACAGgtaaccgactgcattgcatcctcttatggttggtactctaatattgtctt #### Gldc_ID6406_9 --> 0 - 1 Original Alignment GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAggtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg Alignment from CESAR GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAggtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg Alignment from Spaln_aa2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg Alignment from Spaln_nt2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg Alignment from Pairagon GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg Alignment from Exonerate_protein2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg Alignment from Exonerate_coding2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg Alignment from GeneWise GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttccaatacatagttgattctgccctttcctttttactctttagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCTAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtatgtgggtaatgctcacagtatgacatgacagtaagtttctcctaggg #### Gldc_ID6410_5 --> 1 - 2 Original Alignment aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagaCACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCaagtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc Alignment from CESAR aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagaCACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCaagtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc Alignment from Spaln_aa2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCAAgtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc Alignment from Spaln_nt2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCAAgtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc Alignment from Pairagon ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCAAgtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc Alignment from Exonerate_protein2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCAAgtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc Alignment from Exonerate_coding2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCAAgtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc Alignment from GeneWise ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA gcagggaaaaaaaaatctttaagttctgctgtgtgcttgtctccttccagACACAACAAGAGGAAGAAATTTTTTGTTGATCCTTGTTGTCACCCACAAACCATAGCTGTTGTCCAGACTCGAGCCAAgtacggggtgcaaattgtgttttgagccatgggtaatattttatcatttc #### Gldc_ID6416_2 --> 0 - 1 Original Alignment AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTt gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTtgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct Alignment from CESAR AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTt gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTtgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct Alignment from Spaln_aa2Genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTTgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct Alignment from Spaln_nt2Genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTTgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct Alignment from Pairagon AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTTgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct Alignment from Exonerate_protein2genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTTgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct Alignment from Exonerate_coding2genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTTgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct Alignment from GeneWise AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT gactcagaggccccttaccctgactgtccattaacactgtttttattcagAGTATTGATGAAGTCATTGAAAAGACAGTCCCTGCAAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTTgtgaggaagaggagaatactcaggggccccagtgctcagccgtctaatct #### Gnaq_ID4029_4 --> 1 - 2 Original Alignment cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag tgggcttagactaatggtaactgacatcaccctagcatctctctccctagcTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCaggtatgaacagagttcattaacacccttgaactggtagtgagacattccgt Alignment from CESAR cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag tgggcttagactaatggtaactgacatcaccctagcatctctctccctagcTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCaggtatgaacagagttcattaacacccttgaactggtagtgagacattccgt Alignment from Spaln_aa2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG tgggcttagactaatggtaactgacatcaccctagcatctctctccctagCTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCAGgtatgaacagagttcattaacacccttgaactggtagtgagacattccgt Alignment from Spaln_nt2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG tgggcttagactaatggtaactgacatcaccctagcatctctctccctagCTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCAGgtatgaacagagttcattaacacccttgaactggtagtgagacattccgt Alignment from Pairagon CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG tgggcttagactaatggtaactgacatcaccctagcatctctctccctagCTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCAGgtatgaacagagttcattaacacccttgaactggtagtgagacattccgt Alignment from Exonerate_protein2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG tgggcttagactaatggtaactgacatcaccctagcatctctctccctagCTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCAGgtatgaacagagttcattaacacccttgaactggtagtgagacattccgt Alignment from Exonerate_coding2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG tgggcttagactaatggtaactgacatcaccctagcatctctctccctagCTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCAGgtatgaacagagttcattaacacccttgaactggtagtgagacattccgt Alignment from GeneWise CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG tgggcttagactaatggtaactgacatcaccctagcatctctctccctagCTATTTGAACGACTTGGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGAGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGCGTTATTTTCAGgtatgaacagagttcattaacacccttgaactggtagtgagacattccgt #### Got1_ID8748_7 --> 2 - 2 Original Alignment atGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGtg ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagatGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGtggtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct Alignment from CESAR atGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGtg ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagatGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGtggtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct Alignment from Spaln_aa2Genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagATGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGTGgtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct Alignment from Spaln_nt2Genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagATGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGTGgtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct Alignment from Pairagon ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagATGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGTGgtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct Alignment from Exonerate_protein2genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagATGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGTGgtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct Alignment from Exonerate_coding2genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagATGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGTGgtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct Alignment from GeneWise ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ccctgaaccccactgcagttcatgagtctgttttattctgtcttctgcagATGAGAGAGTTGGGAATCTGACTGTGGTTGGAAAAGAGTCCGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGGTTGTACGAATCACCTGGTCCAACCCCCCAGCCCAAGGAGCTCGGATTGTTGCCGCTACCCTCTCTGACCCTGAGCTCTTTAAGGAGTGgtaaacgcctctaatcccaaggggtggaagctggaatcttgacatcctct #### Got1_ID8749_6 --> 0 - 1 Original Alignment CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATagttccagctactcagagtagcagcactgcctcccttcccctgaaccccac Alignment from CESAR CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATagttccagctactcagagtagcagcactgcctcccttcccctgaaccccac Alignment from Spaln_aa2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgttccagctactcagagtagcagcactgcctcccttcccctgaaccccac Alignment from Spaln_nt2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgttccagctactcagagtagcagcactgcctcccttcccctgaaccccac Alignment from Pairagon CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgttccagctactcagagtagcagcactgcctcccttcccctgaaccccac Alignment from Exonerate_protein2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgttccagctactcagagtagcagcactgcctcccttcccctgaaccccac Alignment from Exonerate_coding2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgttccagctactcagagtagcagcactgcctcccttcccctgaaccccac Alignment from GeneWise CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgcccagacccatttgagtactttgtttcccagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTATCAGGGCTTTGCCTCTGGAGATTTGGAGAAAGATGCATGGGCGATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgttccagctactcagagtagcagcactgcctcccttcccctgaaccccac #### Gpam_ID11530_19 --> 2 - 0 Original Alignment ctGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagctGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg Alignment from CESAR ctGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagctGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg Alignment from Spaln_aa2Genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagCTGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg Alignment from Spaln_nt2Genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagCTGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg Alignment from Pairagon CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagCTGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg Alignment from Exonerate_protein2genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagCTGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg Alignment from Exonerate_coding2genome CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagCTGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg Alignment from GeneWise CTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGTGAAAATGTTTAAGGACATCGGG ttgtgaatatatgctgagtgtacactgatttttttctatcatctttgtagCTGAGAGTGCTACATACTGTCTTGTGAAGAATGCTGTGAAAATGTTTGAGGACATTGGGgtgagcgtctacacctcggtgccatcattctgtgtggcattgttctgtgg #### Gpam_ID11532_17 --> 0 - 0 Original Alignment CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat Alignment from CESAR CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat Alignment from Spaln_aa2Genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat Alignment from Spaln_nt2Genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat Alignment from Pairagon CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat Alignment from Exonerate_protein2genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat Alignment from Exonerate_coding2genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat Alignment from GeneWise CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctgtgtgcctaggatatcttctcgcttccctccctcagCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtgaatggtgatggatactgggtcaagaacagttgatgttaagcatatat #### Gpam_ID11534_15 --> 2 - 0 Original Alignment ctTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagctTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg Alignment from CESAR ctTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagctTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg Alignment from Spaln_aa2Genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagCTTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg Alignment from Spaln_nt2Genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagCTTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg Alignment from Pairagon CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagCTTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg Alignment from Exonerate_protein2genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagCTTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg Alignment from Exonerate_coding2genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagCTTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg Alignment from GeneWise CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG tctcgtttagaccctagaactttcaactatctttatttatttttttatagCTTGCAGTATCTATGCAGTCCTGAATAAGAGATGCTCTGGAGGATTTGCTGGAGGCCTTGGCAACCTGATCAGCCAGGAGCACCTAGTGAGGAAGGCCGCCAGCTTGTGCTACCTACTTTCTAATGAAGGTACCATTTCACTAgtgagtgggggtatggaggtgggcaggtttctacctggcttttgattatg #### Gpam_ID11542_7 --> 0 - 2 Original Alignment ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCag cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCaggtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt Alignment from CESAR ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCag cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCaggtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt Alignment from Spaln_aa2Genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCAGgtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt Alignment from Spaln_nt2Genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCAGgtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt Alignment from Pairagon ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCAGgtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt Alignment from Exonerate_protein2genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCAGgtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt Alignment from Exonerate_coding2genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCAGgtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt Alignment from GeneWise ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG cctgagccttgcccctaccactttattctattcttcttcccctcttgcagACGAACTTGCCGCTCTTATTTCTGTTAGTGCACAGATCCCACATTGACTACCTATTGCTCACCTTCATCCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTGTCTTCAGgtatgcttattactctcactgaggagaatgtagtaaaatgctagctcagt #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG tgctttaagtcaatacatagcccagttcattgatactgctttttactcagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATCCACAAGGGTCAATTAGAGATGGTCAAGGCTGCAACTGAGgtgagttttgaatttggactccttgggtaaaggtcctgtggtgccgttat #### Gpam_ID11545_4 --> 1 - 2 Original Alignment gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag acactactgacatggtatgatacactacaaacactgtcttttctttacagaCACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCaggtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg Alignment from CESAR gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag acactactgacatggtatgatacactacaaacactgtcttttctttacagaCACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCaggtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg Alignment from Spaln_aa2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acactactgacatggtatgatacactacaaacactgtcttttctttacagACACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg Alignment from Spaln_nt2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acactactgacatggtatgatacactacaaacactgtcttttctttacagACACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg Alignment from Pairagon GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acactactgacatggtatgatacactacaaacactgtcttttctttacagACACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg Alignment from Exonerate_protein2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acactactgacatggtatgatacactacaaacactgtcttttctttacagACACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg Alignment from Exonerate_coding2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acactactgacatggtatgatacactacaaacactgtcttttctttacagACACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg Alignment from GeneWise GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acactactgacatggtatgatacactacaaacactgtcttttctttacagACACAGAGGATGGCTGGCAAGACGGCTATCTTATATACTTTTTGTTCAAGAGCGAGATGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggggctactgttgacaaagcaaagaccattacctgctaagtg #### Gpam_ID11547_2 --> 0 - 0 Original Alignment GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt Alignment from CESAR GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt Alignment from Spaln_aa2Genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt Alignment from Spaln_nt2Genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt Alignment from Pairagon GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt Alignment from Exonerate_protein2genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt Alignment from Exonerate_coding2genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt Alignment from GeneWise GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtaggagtgtcaagacaatttttgcatatactttcttgttttgacagGTTGACTGTGGGTTTAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTCGTAGGAAGGTGCTGCTATTCCTGCACTCCGCAGAGCTGGgtgactatcacaacgctttgctgttgcagggggttttcattcaatttgtt #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTC--------- TTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGC---TCCTGG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGgctggacactgtgaggatgatggctgctcctgggagcatagccggagtgagagcaccaggtgagATCTTTGACAGGGCTGGCCACTGTGAGGATGATGGATGCTCCTGG Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCG- GGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGgctggacactgtgaggatgatggctgctcctgggagcatagccggagtgagagcaccaggtgagatctttgacagGGCTGGCCACTGTGAGGATGATGGATGCTCCTGG Alignment from Pairagon AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct #### Grk5_ID13411_6 --> 1 - 2 Original Alignment gTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAag cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacaggTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAaagtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag Alignment from CESAR gTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAag cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacaggTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAaagtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag Alignment from Spaln_aa2Genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacagGTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag Alignment from Spaln_nt2Genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacagGTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag Alignment from Pairagon GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacagGTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag Alignment from Exonerate_protein2genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacagGTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag Alignment from Exonerate_coding2genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacagGTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag Alignment from GeneWise GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctagatagggatcaaagcacacttagcttcttttggcctcgcgacagGTCTGTGCATGACTACTTGAAGGGGGACCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtaagtgctctgcatggctcatgtgtacaattgtatggcagggcacagag #### Grk5_ID13415_9 --> 0 - 2 Original Alignment GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATag agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATaggtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc Alignment from CESAR GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATag agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATaggtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc Alignment from Spaln_aa2Genome GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATAG agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATAGgtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc Alignment from Spaln_nt2Genome GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATAG agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATAGgtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc Alignment from Pairagon GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATAG agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATAGgtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc Alignment from Exonerate_protein2genome GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATAG agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATAGgtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc Alignment from Exonerate_coding2genome GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATAG agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATAGgtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc Alignment from GeneWise GTCAACCTGGCCTATGCCTATGAAACCAAAGATGCACTATGCCTGGTTCTGACCATTATGAATGGTGGTGACCTGAAGTTTCACATCTACAATATGGGGAATCCTGGCTTTGAGGAAGAGCGAGCCTTATTTTATGCAGCTGAGATCCTCTGTGGCCTAGAAGACTTACACCGTGAGAACACTGTCTATAG agtctttgacatttcttagggcctcacttcttcatattttttggttttagGTCAACCTGTCCTATGCCTATGAAACCCAAGATGCACTTTGCCTGGTTCTGACAATTATGAATGGTGGAGACCTCAAGTTTCACATCTACAATATGGGTAATCCTGGCTTTGAGGAAGAGCAAGCCTTATATTATGCAGCTGAGATCCTCTGTGGGCTAGAAGACTTACAACGTGAGAACACTGTCTATAGgtaagaagcattcccatagtcacagtattgtaacagtttcccaggtcccc #### Grk5_ID13422_15 --> 0 - 0 Original Alignment ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca Alignment from CESAR ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca Alignment from Spaln_aa2Genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca Alignment from Spaln_nt2Genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca Alignment from Pairagon ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca Alignment from Exonerate_protein2genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca Alignment from Exonerate_coding2genome ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca Alignment from GeneWise ATGATAGAAACAGAATGTTTCAAGGAGCTGAATGTGTTCGGACCTAACGGTACCCTCTCACCAGACCTGAACAGAAGTCAGCCTCCAGAACCGCCAAAGAAAGGGCTGTTCCACAGACTCTTCAGGCGTCAG agaacgagaccctgaagagggagcatggcttataaccttgctcttcctagATGATAGAGACAGAATGTTTCAAAGAATTGAATGTGTTTGGACCTAATGGTACCCTTTCACCAGACCTGAATAGAAGTCAGCCTCCAGAGCCACCAAAAAAAGGGCTGTTCCACAGACTATTCAGGCGTCAGgtaagtcaatcaacatggcgagctggccttagctccagggctttgtccca #### Gsto1_ID10376_4 --> 0 - 0 Original Alignment GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt Alignment from CESAR GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt Alignment from Spaln_aa2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt Alignment from Spaln_nt2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt Alignment from Pairagon GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt Alignment from Exonerate_protein2genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt Alignment from Exonerate_coding2genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt Alignment from GeneWise GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctcacgctgatgatcgttcattctgttttccccctagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCAAAGAGAAAGGAAGATTCTCCAAACCTAAGGGAAGCACTGGAGAATGAGTTCAAGAAGTTAGAGGAGgtgagtacctctcttgaattttatggctggtgtggctacttgatttttgt #### Gsto2_ID10387_4 --> 0 - 0 Original Alignment GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg Alignment from CESAR GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg Alignment from Spaln_aa2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg Alignment from Spaln_nt2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg Alignment from Pairagon GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg Alignment from Exonerate_protein2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg Alignment from Exonerate_coding2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg Alignment from GeneWise GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacatcctgaccgagaagaataaaattctccttgaagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACGGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtaatcaggacctgacccattagggatggttgagctgtgtagtgcctctg #### Gucy2g_ID11572_19 --> 2 - 1 Original Alignment gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc tagcttctagcccaagaggcattttaagctggcccctcatttccccccaggtCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTAcgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt Alignment from CESAR gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc tagcttctagcccaagaggcattttaagctggcccctcatttccccccaggtCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTAcgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt Alignment from Spaln_aa2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tagcttctagcccaagaggcattttaagctggcccctcatttccccccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt Alignment from Spaln_nt2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tagcttctagcccaagaggcattttaagctggcccctcatttccccccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt Alignment from Pairagon GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tagcttctagcccaagaggcattttaagctggcccctcatttccccccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt Alignment from Exonerate_protein2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tagcttctagcccaagaggcattttaagctggcccctcatttccccccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt Alignment from Exonerate_coding2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tagcttctagcccaagaggcattttaagctggcccctcatttccccccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt Alignment from GeneWise GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tagcttctagcccaagaggcattttaagctggcccctcatttccccccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtacagaataattgtggctgcaggtgctattgactgaccactgtgctagt #### Gucy2g_ID11577_14 --> 2 - 1 Original Alignment agCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGg tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagagCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGggtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc Alignment from CESAR agCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGg tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagagCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGggtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc Alignment from Spaln_aa2Genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagAGCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGGgtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc Alignment from Spaln_nt2Genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagAGCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGGgtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc Alignment from Pairagon AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagAGCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGGgtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc Alignment from Exonerate_protein2genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagAGCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGGgtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc Alignment from Exonerate_coding2genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagAGCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGGgtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc Alignment from GeneWise AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacaattgtcctgcagagctccactttctgatttccttcccaaagAGCTTTACTGGACAGCTCCTGAGCTGCTGCAGCTGCGAAAGAGTCCCTGCTCTGGCACGCCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTGATCCACCAGCAGGCGCATGGGCCCTTTGAGGACCTTGAGGCGGCTCCAGAGGgtaagtccagagcatgctggtggtgggacaaggagcctgtatgcagaggc #### Gucy2g_ID11578_13 --> 0 - 1 Original Alignment GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAg tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAggtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt Alignment from CESAR GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAg tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAggtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt Alignment from Spaln_aa2Genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAGgtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt Alignment from Spaln_nt2Genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAGgtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt Alignment from Pairagon GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAGgtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt Alignment from Exonerate_protein2genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAGgtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt Alignment from Exonerate_coding2genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAGgtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt Alignment from GeneWise GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG tgagatgcatcctccagtaccatttttatgacactgctctgtcctttcagGGTCTGCTGTTCCTGCACGGGAGCCCACTGAGGTCTCACAGCAACTTGAAACCCTCCAACTGCCTGGTTGATAGTCACATGCAGCTGAAGTTGTCAGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAGgtgacaatcaccagagctgaaatccacttgcctaaatgatcagagggttt #### Habp2_ID12054_2 --> 0 - 1 Original Alignment CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAg aataatgccgtaacactgttacacattttaagcatactttactattgaagCTTGCTCTAATGTCCTTTACTGTGCCCCCAGACCCTggtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta Alignment from CESAR CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAg aataatgccgtaacactgttacacattttaagcatactttactattgaagCTTGCTCTAATGTCCTTTACTGTGCCCCCAGACCCTggtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta Alignment from Spaln_aa2Genome CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG aataatgccgtaacactgttacacattttaagcatactttactattgaagCTTGCTCTAATGTCCTTTACTGTGCCCCCAGACCCTGgtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta Alignment from Spaln_nt2Genome CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG aataatgccgtaacactgttacacattttaagcatactttactattgaagCTTGCTCTAATGTCCTTTACTGTGCCCCCAGACCCTGgtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta Alignment from Pairagon CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG aataatgccgtaacactgttacacattttaagcatactttactattgaagCTTGCTCTAATGTCCTTTACTGTGCCCCCAGACCCTGgtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta Alignment from Exonerate_protein2genome CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG aataatgccgtaacactgttacacattttaagcatactttactattgaagCTTGCTCTAATGTCCTTTACTGTGCCCCCAGACCCTGgtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta Alignment from Exonerate_coding2genome CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG aataatgccgtaacactgttacacattttaagcatactttactattgaagCTTGCTCTAATGTCCTTTACTGTGCCCCCAGACCCTGgtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta Alignment from GeneWise aataatgccgtaacactgttacacattttaagcatactttactattgaagcttgctctaatgtcctttactgtgcccccagaccctggtaagcgtgctgtcgatccaggtttctagagtgtatgggctcttcttgta #### Habp2_ID12062_8 --> 2 - 2 Original Alignment acACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCga tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagacACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCgagtaaggatctattgggaagggagaatggcaagatagcctctttttcccct Alignment from CESAR acACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCga tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagacACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCgagtaaggatctattgggaagggagaatggcaagatagcctctttttcccct Alignment from Spaln_aa2Genome ACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGA tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagACACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCGAgtaaggatctattgggaagggagaatggcaagatagcctctttttcccct Alignment from Spaln_nt2Genome ACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGA tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagACACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCGAgtaaggatctattgggaagggagaatggcaagatagcctctttttcccct Alignment from Pairagon ACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGA tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagACACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCGAgtaaggatctattgggaagggagaatggcaagatagcctctttttcccct Alignment from Exonerate_protein2genome ACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGA tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagACACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCGAgtaaggatctattgggaagggagaatggcaagatagcctctttttcccct Alignment from Exonerate_coding2genome ACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGA tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagACACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCGAgtaaggatctattgggaagggagaatggcaagatagcctctttttcccct Alignment from GeneWise ACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGA tttcagcatctgtcagagcattcaataagggctgccttgtccctttccagACACTCCTAACCCAGTGAAAAGCCTTCTGGAGCCCGTGATGGAGCTGCCAGGGTTTGAGTCCTGTGGGAAGACAGAGGTAGCTGAGCACGCAGTCAGGCGTATCTATGGGGGCTTTAAGAGCACAACAGGCAAGCACCCATGGCTGGTGTCCCTGCAAACCTCACTGCCATTGAGCACCTCCATGCCCCAAGACCACTTCTGTGGGGGTGCCCTGATCCACCCCTGTTGGGTGCTCACCACAGCTCACTGTACCGAgtaaggatctattgggaagggagaatggcaagatagcctctttttcccct #### Hectd2_ID7145_3 --> 2 - 2 Original Alignment tgAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTga ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagtgAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTgagtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg Alignment from CESAR tgAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTga ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagtgAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTgagtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg Alignment from Spaln_aa2Genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagTGAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg Alignment from Spaln_nt2Genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagTGAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg Alignment from Pairagon TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagTGAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg Alignment from Exonerate_protein2genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagTGAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg Alignment from Exonerate_coding2genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagTGAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg Alignment from GeneWise TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA ccatagtaaatgcatgataaaatgcttactctgtgtgtctttctctccagTGAGAGACCTACCACCAATTTGTCTTGATGTCAGGCAAAAACACTGCATGTCTGTGGAAGCACTACCATCTGAAGTGAAGATCCCACCACTTCCAGAGCCCTCACTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtaaggtttaccctgcatagattaactgtcttttgcatgtcagggctatg #### Hectd2_ID7147_5 --> 0 - 0 Original Alignment AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc Alignment from CESAR AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc Alignment from Spaln_aa2Genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc Alignment from Spaln_nt2Genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc Alignment from Pairagon AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc Alignment from Exonerate_protein2genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc Alignment from Exonerate_coding2genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc Alignment from GeneWise AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT gcttcatgaaattttaaacgttattaatttttgttttgtttttactgtagAAAGATGCCACAACATCGTTTAACACTATTGAGGATTCTGGGCTTAATGCGAATTTAGTGAATGCTGTGTTTGATGCTTTACTGAATACTgtatggatgtgatagggctacttgaatagtattgctctatgtctctttcc #### Hectd2_ID7150_8 --> 0 - 2 Original Alignment AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAaa tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAaagtagtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg Alignment from CESAR AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAaa tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAaagtagtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg Alignment from Spaln_aa2Genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAAAgtagtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg Alignment from Spaln_nt2Genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAAAgtagtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg Alignment from Pairagon AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAAAgtagtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg Alignment from Exonerate_protein2genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAAAgtagtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg Alignment from Exonerate_coding2genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAAAgtagtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg Alignment from GeneWise AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAAA-- tttgtccaatagttaagacaagttcaacgcttacccctcttcctccccagAATCCCCGATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACGTTAGTGGAGGCTGACCATTACTTCCTAGTTCACTGGCTTAAAAAGTAgtcaaatttatagtcagtccttttagctgcaatttttaggagtgatg #### Hells_ID7696_3 --> 0 - 0 Original Alignment GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt Alignment from CESAR GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt Alignment from Spaln_aa2Genome GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt Alignment from Spaln_nt2Genome GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt Alignment from Pairagon GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt Alignment from Exonerate_protein2genome GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt Alignment from Exonerate_coding2genome GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt Alignment from GeneWise GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG agtcataatgtatcttttctctgacagggtcctaactctctttccctcagGAACAGAAGAAGAAAGAGGAGTTGGAGAAAAGAAAACAGTCATTAAAGCTTACTGAGgtattttagtaagccagactatggtgcttaactatcggactatggtgctt #### Hells_ID7697_4 --> 0 - 1 Original Alignment GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAg atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAggtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt Alignment from CESAR GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAg atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAggtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt Alignment from Spaln_aa2Genome GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAG atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAGgtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt Alignment from Spaln_nt2Genome GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAG atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAGgtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt Alignment from Pairagon GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAG atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAGgtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt Alignment from Exonerate_protein2genome GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAG atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAGgtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt Alignment from Exonerate_coding2genome GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAG atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAGgtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt Alignment from GeneWise GGTAAAAGTTTAGTTGATGGGAATGGAGAGAAACCAG atttagatttattacactctttcttaattgtggaaccttattctttccagGGTAAGAGTTTAGTCGACGGGAATGGAGAAAAACCAGgtgaggtaactttttctgcctgtaggatgtatgtatgcccttctgtcttt #### Hells_ID7700_7 --> 0 - 0 Original Alignment GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg Alignment from CESAR GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg Alignment from Spaln_aa2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg Alignment from Spaln_nt2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg Alignment from Pairagon GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg Alignment from Exonerate_protein2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg Alignment from Exonerate_coding2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg Alignment from GeneWise GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG atgcttatcagggtgcaccctatcattgtccttcccctcctcccactcagGATGAAAGCTCTTCGACTACAAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTTAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTGCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgagtagttgtcttctctttttctctcagactggtacttcgtgtctctg #### Hells_ID7703_10 --> 0 - 2 Original Alignment CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAag cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAaggtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa Alignment from CESAR CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAag cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAaggtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa Alignment from Spaln_aa2Genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa Alignment from Spaln_nt2Genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa Alignment from Pairagon CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa Alignment from Exonerate_protein2genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa Alignment from Exonerate_coding2genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa Alignment from GeneWise CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG cagatctgagattagttcttacaatcctcaggcgctgcttctggccctagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCAGCTAATCAGGGAGTTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtgggttttatgtattcttaaaacttgaaaaaaagagtgttctaagttaa #### Hells_ID7705_12 --> 0 - 0 Original Alignment ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca Alignment from CESAR ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca Alignment from Spaln_aa2Genome ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca Alignment from Spaln_nt2Genome ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca Alignment from Pairagon ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca Alignment from Exonerate_protein2genome ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca Alignment from Exonerate_coding2genome ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca Alignment from GeneWise ATTTTAACGCCTTTCCTACTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTCCCCCCTAAGCGAGAAGTAGTTGTTTATGCACCACTTTGCAATAAACAAGAGATCTTCTATACAGCTATTGTGAACCGCACAATTGCAAACATGTTTGGATCCTGTGAG gaggaaaagacagataacattcagattgccaagcaccatgtccatcctagATTTTAACACCTTTCCTGCTGAGAAGACTGAAGTCAGATGTTGCTCTTGAAGTACCCCCTAAGCGCGAAGTAGTAGTTTACGCACCACTTTGCAATAAACAAGAGATTTTCTATACAGCTATTGTGAATCGCACAATTGTGAACATGTTTGGATCCTGTGAGgtgagcatgaactcttgaaggtttttgcgttctggtggtcttttaggaca #### Hif1an_ID9066_4 --> 2 - 0 Original Alignment gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtaggaAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc Alignment from CESAR gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtaggaAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc Alignment from Spaln_aa2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtagGAAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc Alignment from Spaln_nt2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtagGAAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc Alignment from Pairagon GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtagGAAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc Alignment from Exonerate_protein2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtagGAAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc Alignment from Exonerate_coding2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtagGAAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc Alignment from GeneWise GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tggggaccattgcatttgttaaggaaatagggtagcgcttgtgtctgtagGAAATGTGACACCTGCTCACTATGATGAGCAACAGAACTTTTTTGCCCAAATAAAGGGCCATGAGAGATGTATCTTATTCCCTCCAGATCAATTTGAGTGCCTCTATCCATTCCCTGTCCAGCACCCCTGTGACAGGCAGAGCCAGgtatgatcatgtggttgtccataactctgggctctggtaatgtctttgcc #### Hif1an_ID9068_6 --> 1 - 0 Original Alignment gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttaggTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac Alignment from CESAR gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttaggTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac Alignment from Spaln_aa2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac Alignment from Spaln_nt2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac Alignment from Pairagon GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac Alignment from Exonerate_protein2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac Alignment from Exonerate_coding2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac Alignment from GeneWise GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG catctatctgcctctctccctccaactaatgaaggaacattttgttttagGTGGCACCATATAGAGTCTTTACTAAATGGGGGAATTACTATCACCGTGAACTTCTGGTATAAGgtaagtattagtaattgtttttgtttgttgccaatgatggatatgtccac #### Hnrnpul2_ID2403_7 --> 0 - 0 Original Alignment AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac Alignment from CESAR AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac Alignment from Spaln_aa2Genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac Alignment from Spaln_nt2Genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac Alignment from Pairagon AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac Alignment from Exonerate_protein2genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac Alignment from Exonerate_coding2genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac Alignment from GeneWise AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggcgtatatttttgggcatgtaagtactggcattttttcttgcagAATTTTGCGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCGGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGCGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCGTTTGTGTTCATCCATGCTGTGCCTGTCGAGGAACGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtgagcccaagtttaggtttcaagctattgaagaagtggtaaatacatac #### Hnrnpul2_ID2405_9 --> 0 - 0 Original Alignment ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc Alignment from CESAR ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc Alignment from Spaln_aa2Genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc Alignment from Spaln_nt2Genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc Alignment from Pairagon ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc Alignment from Exonerate_protein2genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc Alignment from Exonerate_coding2genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc Alignment from GeneWise ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgaaactcattatgtaagtcgttctcctccttaccctgcagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtaattataaacagatctggagacaaaaatcatgtgtgcattctagagtc #### Hps1_ID8612_16 --> 0 - 0 Original Alignment GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc Alignment from CESAR GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc Alignment from Spaln_aa2Genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc Alignment from Spaln_nt2Genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc Alignment from Pairagon GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc Alignment from Exonerate_protein2genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc Alignment from Exonerate_coding2genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc Alignment from GeneWise GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tccagaggtggcactcctgggaataattcttacacatttactgattctagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATGgtaagggtgcttggtttctgggctagctaaggtgctcctgggagctatcc #### Hps1_ID8620_8 --> 0 - 1 Original Alignment GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGT------AGTCCAggtaagtcatttgatgtagcagaacttagcctcaattgcttctaattctgt Alignment from CESAR GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAg gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGT------AGTCCAggtaagtcatttgatgtagcagaacttagcctcaattgcttctaattctgt Alignment from Spaln_aa2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGT------AGTCCAGgtaagtcatttgatgtagcagaacttagcctcaattgcttctaattctgt Alignment from Spaln_nt2Genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGA gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGTAGTCCAGgtaagtcatttgatgtagcagaacttagcctcaattgcttctaattctgt Alignment from Pairagon GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGT------AGTCCAGgtaagtcatttgatgtagcagaacttagcctcaattgcttctaattctgt Alignment from Exonerate_protein2genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAG gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGT------AGTCCAGgtaagtcatttgatgtagcagaacttagcctcaattgcttctaattctgt Alignment from Exonerate_coding2genome GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGA gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGTAGTCCAGgtaagtcatttgatgtagcagaacttagcctcaattgcttctaattctgt Alignment from GeneWise GACACAGACAGCATCTCCCTCCCTGAAGAGTACTTCACTCCTGCTCCTTCCCCAGGCGATCAGAGTTCAGGTAG gatggtgtcacaaggttgcctgaaatgtctacctgtgttctgttttaaagGACACTGACAGCATTTCCCTCCCTGAAGAGTATTTCACTCCTGCTCCTTCCCCGGGT------AGTCCAGGTAAgtcatttgatgtagcagaacttagcctcaattgcttctaattctgt #### Hpse2_ID8679_6 --> 1 - 2 Original Alignment aTTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAAca cagagagatcattattctaaggcacaccgagtggcctttgatctccctagaTTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAAcagtaatgttccatcatactctattatcagcagctgttaagtggaacagaat Alignment from CESAR aTTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAAca cagagagatcattattctaaggcacaccgagtggcctttgatctccctagaTTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAAcagtaatgttccatcatactctattatcagcagctgttaagtggaacagaat Alignment from Spaln_aa2Genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA cagagagatcattattctaaggcacaccgagtggcctttgatctccctagATTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAACAgtaatgttccatcatactctattatcagcagctgttaagtggaacagaat Alignment from Spaln_nt2Genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA cagagagatcattattctaaggcacaccgagtggcctttgatctccctagATTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAACAgtaatgttccatcatactctattatcagcagctgttaagtggaacagaat Alignment from Pairagon ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA cagagagatcattattctaaggcacaccgagtggcctttgatctccctagATTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAACAgtaatgttccatcatactctattatcagcagctgttaagtggaacagaat Alignment from Exonerate_protein2genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA cagagagatcattattctaaggcacaccgagtggcctttgatctccctagATTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAACAgtaatgttccatcatactctattatcagcagctgttaagtggaacagaat Alignment from Exonerate_coding2genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA cagagagatcattattctaaggcacaccgagtggcctttgatctccctagATTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAACAgtaatgttccatcatactctattatcagcagctgttaagtggaacagaat Alignment from GeneWise ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA cagagagatcattattctaaggcacaccgagtggcctttgatctccctagATTCATGAAAGTGGCAGGAAGCACAGTGGATGCTGTTACGTGGCAACAgtaatgttccatcatactctattatcagcagctgttaagtggaacagaat #### Hpse2_ID8681_4 --> 2 - 1 Original Alignment ccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATg ccttatcttcagttctccaggttataagaatttttttttttacttttcagccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATggtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat Alignment from CESAR ccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATg ccttatcttcagttctccaggttataagaatttttttttttacttttcagccAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATggtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat Alignment from Spaln_aa2Genome CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttatcttcagttctccaggttataagaatttttttttttacttttcagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat Alignment from Spaln_nt2Genome CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttatcttcagttctccaggttataagaatttttttttttacttttcagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat Alignment from Pairagon CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttatcttcagttctccaggttataagaatttttttttttacttttcagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat Alignment from Exonerate_protein2genome CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttatcttcagttctccaggttataagaatttttttttttacttttcagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat Alignment from Exonerate_coding2genome CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttatcttcagttctccaggttataagaatttttttttttacttttcagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat Alignment from GeneWise CCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGACTCCACCTGATATTTGCTCTAAATGCACTGCGTCGTAATCCCAATAACTCCTGGAACAGTTCTAGTGCCCTGAGCCTGTTGAAGTACAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATG ccttatcttcagttctccaggttataagaatttttttttttacttttcagCCAGGTCTCTAGACAAACTTTATAACTTTGCTGATTGCTCTGGTCTCCACCTGATCTTTGCTCTAAATGCACTGTGTCGTAATCCCAACAACTCCTGGAACAGTTCTAGTGCCCTCAGCTTGTTGAAGTATAGTGCCAGCAAAAAGTACAACATTTCTTGGGAACTGGGTAATGgtaaaaaatagggtataccccacacttgggccagaggaacctgcacccat #### Hrasls5_ID2197_3 --> 1 - 0 Original Alignment aGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagaGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc Alignment from CESAR aGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagaGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc Alignment from Spaln_aa2Genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc Alignment from Spaln_nt2Genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc Alignment from Pairagon AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc Alignment from Exonerate_protein2genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc Alignment from Exonerate_coding2genome AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc Alignment from GeneWise AGAGAAGCCGGAAACTAGTTTGGAGCTCACACCCAGCAAGAAGAGGACAGAGCTGATTCCAACATCAAATTCAGAGATCGAAAGCACACAAAAAAACCAAGCAGTTGAG tcaacagctgtgggatgatggctacaagcactctcctctctgccccacagAGAGAAGCCAGAAACTAGTTTGGATCTCACACCCAGCAAGAAGAGAACTGAATTGATTCCAACATCGAATTCAGAGATTGAAAGCACACAAAAAAACCAAGCAGTTGAGgtaagaatgggatccatgggatgatttttttagtttgttggtcatttctc #### Hspa12a_ID12804_11 --> 1 - 1 Original Alignment tGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCc ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagtGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCcgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa Alignment from CESAR tGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCc ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagtGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCcgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa Alignment from Spaln_aa2Genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagTGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCCgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa Alignment from Spaln_nt2Genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagTGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCCgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa Alignment from Pairagon TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagTGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCCgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa Alignment from Exonerate_protein2genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagTGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCCgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa Alignment from Exonerate_coding2genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagTGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCCgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa Alignment from GeneWise TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC ctggcactgtgcactcattcaccacttcccctctctcttaaactttccagTGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTCAAGCCAACCATTGATAGCATTGTTGAGCACCTCCgtaagagtcaggccaagtcatattaatgaattaactgtcaaacattttaa #### Hspa12a_ID12808_7 --> 0 - 1 Original Alignment GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGg cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGggtaagtgttctctctctccttttctctggccacctgctcagcttcaatga Alignment from CESAR GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGg cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGggtaagtgttctctctctccttttctctggccacctgctcagcttcaatga Alignment from Spaln_aa2Genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGGgtaagtgttctctctctccttttctctggccacctgctcagcttcaatga Alignment from Spaln_nt2Genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGGgtaagtgttctctctctccttttctctggccacctgctcagcttcaatga Alignment from Pairagon GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGGgtaagtgttctctctctccttttctctggccacctgctcagcttcaatga Alignment from Exonerate_protein2genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGGgtaagtgttctctctctccttttctctggccacctgctcagcttcaatga Alignment from Exonerate_coding2genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGGgtaagtgttctctctctccttttctctggccacctgctcagcttcaatga Alignment from GeneWise GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG cagacctgcccatgtaccccctggccccgtgttacttatttgatgaccagGCAGGCCTGGCTTCCCCTGAAAACTCCGAGCAGCTAATCATTGCCCTCAAGCATGAGGCTGCTTCCATCTACTGCCGAAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCTGTGGTCAATGGATATAGTGCGAGTGACACAGTGGGAGTGGAGTTTGCACAGGgtaagtgttctctctctccttttctctggccacctgctcagcttcaatga #### Hspa12a_ID12809_6 --> 0 - 0 Original Alignment GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct Alignment from CESAR GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct Alignment from Spaln_aa2Genome GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct Alignment from Spaln_nt2Genome GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct Alignment from Pairagon GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct Alignment from Exonerate_protein2genome GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct Alignment from Exonerate_coding2genome GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct Alignment from GeneWise GAACTGAGTGACCAGGCAGGGTCGGACTTTGAGAACTCTGACGTCAGATGGGTCATCACAGTGCCTGCCATCTGGAAGCAACCAGCCAAGCAGTTCATGAGAGAAGCTGCCTACCAG aaggccagcagcatctctttaccctctagtgggcacctgtctctccacagGAACTAAGTGACCAGGCAGGGTCGGACTTTGAGAACCCTGATGTCAAATGGATAATCACTGTGCCTGCCATTTGGAAGCAACCAGCCAAACAGTTCATGAGGGAAGCAGCTTACCAAgtaagtcacattgggatggcgattttaaggaggggcagagggctggagct #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg Alignment from CESAR gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg Alignment from Pairagon GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg Alignment from Exonerate_coding2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg Alignment from GeneWise GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG ctagcccatcccagcttaggtaggctttacagagccttctgtcacctcagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAGgtgagtctaggccaagagtcagagcatatttgaaagggttcttgtgtagg #### Incenp_ID2610_9 --> 0 - 0 Original Alignment GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg Alignment from CESAR GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg Alignment from Spaln_aa2Genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg Alignment from Spaln_nt2Genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg Alignment from Pairagon GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg Alignment from Exonerate_protein2genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg Alignment from Exonerate_coding2genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg Alignment from GeneWise GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tgtgcgttccgtccaagcccatctatcctcccccctcttttcttttatagGTTGTACGCCCCCTGCGGACTTTTCTGCACACAGTTCAAAAGAATCAGATGCTCATGACCCCCACACTGGCCTCCCGAAGCAGTGTCATGAAATCCTTTATTAAACGCAACACTCCTCTTCGTGTAGACCCAAAGgtgtgtgtgcttgtctcctcaccctgacttgctcgcactaaagctgtgtg #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagcCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagcCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagCCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagCCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagCCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagCCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagCCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gtaaatatcacaggaaactttgtctcatatatttatctccctctcttcagCCTGGAGCAGGAGCCTGTTGAGGTTGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtaagatcacaagccacacatgggtaggctctgactcccccaagcttgtg #### Jak2_ID6231_7 --> 0 - 2 Original Alignment GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATAtcgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt Alignment from CESAR GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATAtcgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt Alignment from Spaln_aa2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATATCgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt Alignment from Spaln_nt2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATATCgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt Alignment from Pairagon GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATATCgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt Alignment from Exonerate_protein2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATATCgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt Alignment from Exonerate_coding2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATATCgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt Alignment from GeneWise GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC aattttattggttctgcaattcaatggttttattctcttcttccttgcagGAGATAGAACTTACCTCATTAAAAGAAGCCCTGTCATTTGTATCATTGATTGATGGGTACTACAGACTAACAGCAGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAACATACACAGCAACTGCCATGGCCCCATATCgtatgaaatgctacattccacaggacagttctaggcctactggtaggatt #### Jak2_ID6232_8 --> 1 - 0 Original Alignment aATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagaATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct Alignment from CESAR aATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagaATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct Alignment from Spaln_aa2Genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagAATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct Alignment from Spaln_nt2Genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagAATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct Alignment from Pairagon AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagAATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct Alignment from Exonerate_protein2genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagAATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct Alignment from Exonerate_coding2genome AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagAATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct Alignment from GeneWise AATGGATTTTGCCATTAGCAAACTAAAGAAGGCGGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAGGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAG tagatccaggcctgtaccagtgcaatataattctttgtacttctttctagAATGGATTTTGCCCTTAGCAAACTAAATAAGGCAGGTAACCAGACTGGACTATATGTGCTACGATGCAGCCCTAAAGACTTCAACAAATACTTTCTGACCTTTGCTGTTGAGgtgagtaggtcatattatcaatgaccacaaggcaatcaagttatttacct #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct #### Kank1_ID5456_3 --> 2 - 1 Original Alignment gaAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACg tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcaggaAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACagtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc Alignment from CESAR gaAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACg tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcaggaAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACagtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc Alignment from Spaln_aa2Genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcagGAAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACAgtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc Alignment from Spaln_nt2Genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcagGAAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACAgtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc Alignment from Pairagon GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcagGAAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACAgtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc Alignment from Exonerate_protein2genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcagGAAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACAgtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc Alignment from Exonerate_coding2genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcagGAAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACAgtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc Alignment from GeneWise GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG tgaacttcagaactaacctcacacatctcctcctgcccacgacattgcagGAAATCACTTGGAATATACCTGCAAATGTGGTGGCCTTCGGTCAGGAGGACTGTTTAATTTACAACCATCCCAGCCTGAAGTGGAGGCAGAGACTGCAGAAGGCAAACATAGCCGAGGCCATGAGCAGTTCCCCATGCAAGGGAGTAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCCACTGGCCTCTACAgtaagccttgcagtctgtcaacaccaccagccaatgagtacaagctgacc #### Kank1_ID5460_6 --> 1 - 0 Original Alignment gTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagaTATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag Alignment from CESAR gTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagaTATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag Alignment from Spaln_aa2Genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagATATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag Alignment from Spaln_nt2Genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagATATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag Alignment from Pairagon GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagATATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag Alignment from Exonerate_protein2genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagATATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag Alignment from Exonerate_coding2genome GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagATATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag Alignment from GeneWise GTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATG gtgactcttggacctggttgattgaattctaaatgcattttttttttcagATATGAACTAAGTGAAAAGATGTTGTCAGACTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCTAGCAAAGATATGgtgagtgcacgcagtaggagcaatgtgctggttttgaagcatggattcag #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagcgCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACtgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagcgCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACtgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac #### Kazald1_ID9300_2 --> 2 - 0 Original Alignment agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagagCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga Alignment from CESAR agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagagCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga Alignment from Spaln_aa2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga Alignment from Spaln_nt2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga Alignment from Pairagon AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga Alignment from Exonerate_protein2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga Alignment from Exonerate_coding2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga Alignment from GeneWise AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gcctcaagtgtcctcaagcctccccttacccgtctcattcccgtacacagAGCCCCAGATCCTGTTGCAGCCTCACAATATTTGGAATGTAACTGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTTGATTGAGTGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGCGATGACCCTCATATCTCATTGCAGgtgagcgacagggttcatggggctaaaaagaccaaaaacaaaaataagga #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGggtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGggtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGA- tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt #### Kdm2a_ID501_19 --> 2 - 1 Original Alignment gtCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTG---GCAGGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAg ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccaggtCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAggtaagatatcactggttacataggggaataatctgttctttgaatcatgt Alignment from CESAR gtCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTGGCA---GGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAg ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccaggtCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAggtaagatatcactggttacataggggaataatctgttctttgaatcatgt Alignment from Spaln_aa2Genome GTCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTGGCA---GGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAG ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccagGTCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAGgtaagatatcactggttacataggggaataatctgttctttgaatcatgt Alignment from Spaln_nt2Genome GTCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTGG---CAGGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAG ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccagGTCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAGgtaagatatcactggttacataggggaataatctgttctttgaatcatgt Alignment from Pairagon GTCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTGG---CAGGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAG ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccagGTCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAGgtaagatatcactggttacataggggaataatctgttctttgaatcatgt Alignment from Exonerate_protein2genome GTCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTGGCA---GGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAG ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccagGTCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAGgtaagatatcactggttacataggggaataatctgttctttgaatcatgt Alignment from Exonerate_coding2genome GTCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTGGCA---GGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAG ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccagGTCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAGgtaagatatcactggttacataggggaataatctgttctttgaatcatgt Alignment from GeneWise GTCAAGACAATCGAAGCAAACTCCGGAACATGACTGACTTCCGGCTGGCA---GGCCTTGACATCACAGATGCTACTCTCCGACTCATCATTCGCCACATGCCCCTTTTGTCTCGACTTGACCTCAGTCACTGCAGTCACCTTACAGATCAGTCCTCCAACCTACTAACTGCTGTCGGGTCTTCCACTCGATACTCCCTTACAGAGCTCAATATGGCAG ctgatcacaaattcccagtctcaatctgctgggtttgcttctcttcccagGTCAAGACAATCGAAGCAAACTCCGGAACACAACTGACTTCCGACTGGCGTCAGGCCTTGATATCACAGATGCTACTCTCCTGCTCATAATTCGCTGTACGCCCCTTCTGTCCCGACTTGATCTCAGTCACTGTAGTCACCTTACAGATCAGTCCTCTAACCTACTAACTCCTGTTGGGTCTTCCACTCGGTACTCCCTTACAGAGCTCAATATGGCAGgtaagatatcactggttacataggggaataatctgttctttgaatcatgt #### Kdm2a_ID505_15 --> 0 - 0 Original Alignment ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc Alignment from CESAR ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc Alignment from Spaln_aa2Genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc Alignment from Spaln_nt2Genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc Alignment from Pairagon ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc Alignment from Exonerate_protein2genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc Alignment from Exonerate_coding2genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc Alignment from GeneWise ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG agcaaaggcagcactgaccaagcttttatgacactggctgtcgcctccagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtgagtgaaatgtacaatctgcccttcgcattaatatctaaaggcttccc #### Kdm2a_ID512_9 --> 2 - 0 Original Alignment gtTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctaggcTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa Alignment from CESAR gtTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctaggcTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa Alignment from Spaln_aa2Genome GTTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctagGCTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa Alignment from Spaln_nt2Genome GTTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctagGCTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa Alignment from Pairagon GTTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctagGCTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa Alignment from Exonerate_protein2genome GTTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctagGCTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa Alignment from Exonerate_coding2genome GTTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctagGCTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa Alignment from GeneWise GTTGGATTCATGCTGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGG agtatgtgccttggcaattgccatacattgttaataattttcttccctagGCTGGATTCATGCCGTGTATACTCCTACAGACACATTAGTGTTTGGAGGCAATTTTTTGCATAGCTTCAACATCCCCATGCAATTAAAGATATACAGCATTGAAGATCGAACACGGgtttgcactgtaacaattgtaagtgttgtgccgcgcgctaaatatccgaa #### Kdm2a_ID515_6 --> 0 - 2 Original Alignment GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaa ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAaagtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt Alignment from CESAR GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaa ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAaagtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt Alignment from Spaln_aa2Genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAAAgtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt Alignment from Spaln_nt2Genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAAAgtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt Alignment from Pairagon GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAAAgtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt Alignment from Exonerate_protein2genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAAAgtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt Alignment from Exonerate_coding2genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAAAgtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt Alignment from GeneWise GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA ctcattgctattcctgaatccttaatgcctttctcctctcttcccttcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCTAAAGTGCAAAAgtaagtgactcattatgtattttcctcagtgttctacgaggtagtgaatt #### Kdm2a_ID516_5 --> 2 - 0 Original Alignment ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagggAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt Alignment from CESAR ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagggAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt Alignment from Spaln_aa2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt Alignment from Spaln_nt2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt Alignment from Pairagon GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt Alignment from Exonerate_protein2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt Alignment from Exonerate_coding2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt Alignment from GeneWise TCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgacacaagatacctagttagtaattttttttcttttcctttttctatagggagCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAGGGGATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAGCTCTACAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCCTCCACAgtatgtctttgttgtcctttctccacatgctaatatatctcttttttttt #### Kdm2a_ID517_4 --> 1 - 1 Original Alignment gATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGg gattcacactgatgggaggaactgaaatgagaccgagctctctgccacaggATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGggtaggaaacattcaatccacctaccccatgatcttttagagttgggaact Alignment from CESAR gATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGg gattcacactgatgggaggaactgaaatgagaccgagctctctgccacaggATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGggtaggaaacattcaatccacctaccccatgatcttttagagttgggaact Alignment from Spaln_aa2Genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG gattcacactgatgggaggaactgaaatgagaccgagctctctgccacagGATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGGgtaggaaacattcaatccacctaccccatgatcttttagagttgggaact Alignment from Spaln_nt2Genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG gattcacactgatgggaggaactgaaatgagaccgagctctctgccacagGATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGGgtaggaaacattcaatccacctaccccatgatcttttagagttgggaact Alignment from Pairagon GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG gattcacactgatgggaggaactgaaatgagaccgagctctctgccacagGATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGGgtaggaaacattcaatccacctaccccatgatcttttagagttgggaact Alignment from Exonerate_protein2genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG gattcacactgatgggaggaactgaaatgagaccgagctctctgccacagGATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGGgtaggaaacattcaatccacctaccccatgatcttttagagttgggaact Alignment from Exonerate_coding2genome GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG gattcacactgatgggaggaactgaaatgagaccgagctctctgccacagGATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGGgtaggaaacattcaatccacctaccccatgatcttttagagttgggaact Alignment from GeneWise GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG gattcacactgatgggaggaactgaaatgagaccgagctctctgccacagGATGCCAGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGGgtaggaaacattcaatccacctaccccatgatcttttagagttgggaact #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagatTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaggtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagatTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaggtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA ctcttgctgattctaatcttaatctttcagtaacacattctactctgcagATTTTAATGTTGAATATATCCAGCAGGGTGGGCTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAGgtaatggctcatgggccccaagcctgagataagcctgacatagacgcaaa #### Kdm2a_ID519_2 --> 0 - 1 Original Alignment CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAg atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAggtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc Alignment from CESAR CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAg atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAggtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc Alignment from Spaln_aa2Genome CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAGgtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc Alignment from Spaln_nt2Genome CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAGgtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc Alignment from Pairagon CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAGgtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc Alignment from Exonerate_protein2genome CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAGgtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc Alignment from Exonerate_coding2genome CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAGgtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc Alignment from GeneWise CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG atagacgaagaagtgcatgattttacctcgtgtggtgtgtttcctgctagCGTGGTACCATGCGTTGTCGCTATGAAGATGACGGAATTTCAGATGATGAAATTGAAGGCAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACTAACAAATACAATGCCAATTTTGTTACTCTTATGGAGGGTAAAGgtgagtaccatttcaattcagaccttggattcattggtgtcaaactcatc #### Kif11_ID7317_7 --> 1 - 0 Original Alignment tCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagtCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa Alignment from CESAR tCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagtCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa Alignment from Spaln_aa2Genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa Alignment from Spaln_nt2Genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa Alignment from Pairagon TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa Alignment from Exonerate_protein2genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa Alignment from Exonerate_coding2genome TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa Alignment from GeneWise TCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAAGAGCTTGTTAAAATTGGAAAGTTGAATTTG acaacttcccaaacagataaagtactcaaattctcattaaaaaattttagTCGTTCACACTCAGTTTTTTCTGTTACGATACACATGAAAGAAACAACAATTGATGGAGAACAGCTTGTTAAAATTGGAAAGTTGAATTTGgtaaatatgctgcctcataccactgtgctaaccttgatttaatcatggaa #### Kif11_ID7325_15 --> 0 - 0 Original Alignment GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac Alignment from CESAR GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac Alignment from Spaln_aa2Genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac Alignment from Spaln_nt2Genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac Alignment from Pairagon GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac Alignment from Exonerate_protein2genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac Alignment from Exonerate_coding2genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac Alignment from GeneWise GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatggccacattattaggaaagcaaatactttgttttctagGATGAACTCCTGACTGACCTCTTCACTTCACTGAAGACCATCATAGCACCAAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTGCAGCATATTTTCAGGGCTTCATCCAAAGTGGCCGATAAGgtagatatctagcttcatctgaagtcccacgcaaacaagaaatcagccac #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_nt2Genome TGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag-GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaACCCAGGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaACCCAGGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt #### Kif20b_ID7000_5 --> 2 - 0 Original Alignment gcACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcataggtACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta Alignment from CESAR gcACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcataggtACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta Alignment from Spaln_aa2Genome GCACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcatagGTACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta Alignment from Spaln_nt2Genome GCACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcatagGTACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta Alignment from Pairagon GCACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcatagGTACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta Alignment from Exonerate_protein2genome GCACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcatagGTACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta Alignment from Exonerate_coding2genome GCACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcatagGTACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta Alignment from GeneWise GCACAGAAGAAAATATTGGTATTTTGCCTAGAACACTGAATGTATTGTTTGATAGTCTTCAGGAAAGACTATATACGAAGATGAGCTTCAAACCACACAGATGTAGAGAATACTTAAAATTATCATCTGATCAAGAGAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAG aatggagctttagtactccaaaacattctgaatcttctattcatgcatagGTACAGAAGAAAATATTGGTATTTTGCCTAGAACACTCAATGTATTGTTTGACAGTCTTCAGGAAAGACTATATACAAAGATGAGCTTCAAACCGCATAGATGCAGAGAATACTTAAAATTAGCATCTGATCAAGAAAAGGAGGAAAGTGCTAACAAAAATACATTGCTGCGACAAATTAAGGAGgtacggcagcattcttattaagaggagataggccaggtgtcttgccctta #### Kif20b_ID7001_6 --> 0 - 1 Original Alignment GTTACCATACATAATGACAGTTATGACGTTCTTTGTg attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTggtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt Alignment from CESAR GTTACCATACATAATGACAGTTATGACGTTCTTTGTg attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTggtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt Alignment from Spaln_aa2Genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTG attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTGgtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt Alignment from Spaln_nt2Genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTG attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTGgtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt Alignment from Pairagon GTTACCATACATAATGACAGTTATGACGTTCTTTGTG attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTGgtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt Alignment from Exonerate_protein2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTG attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTGgtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTG attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTGgtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt Alignment from GeneWise GTTACCATACATAATGACAGTTATGACGTTCTTTGTG attctacttatgaacaaaaatatttttttgttattttaactttttcccagGTTACAATACATAATGACAGTTATGATGTTCTTTGTGgtaagttgctttccttacttatgttcatttacttttctcgagatgatgtt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAaagtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAaagtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cggaatgaaaaactttgcagtactgttgaatgtttttcttctttgaacagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACATCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTAAAGAACAGTGAAAAGTCAAAgtaagagtccttagtgccattatgtaaatctaactttgtgtgcttttgaa #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccaggGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct Alignment from CESAR gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccaggGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccagGGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccagGGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccagGGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccagGGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccagGGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA gtgttatttgtgattaagtcattttttaagctgtcttgctcttttcccagGGAGACAGTTATTCATGAACGAGAAATATTGGAGGAAAATGCTGAACGTCGCTTGGCAATTTTCGAAGATTTGGCTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGCGATATAGAACTTGAAACTGAAgtaaagtgatgataacattaaaaatcttgatattctctcacgtattctct #### Kif20b_ID7021_26 --> 0 - 0 Original Alignment GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa Alignment from CESAR GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa Alignment from Spaln_aa2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa Alignment from Spaln_nt2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa Alignment from Pairagon GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa Alignment from Exonerate_protein2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa Alignment from Exonerate_coding2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa Alignment from GeneWise GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG atagtttctcaaattaaaaatagttgtcgccgcaccccctcccttcccagGAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCTGTTGATCTTGGTGGAGTTGAAACTGAACCCCAGTCAACAAGTCTGGAAATTTCTAGGAACACAGCAGAGgtaaggattcagcagtgcacccaagtatttgctctcttaacctgttccaa #### Kif20b_ID7022_27 --> 0 - 0 Original Alignment GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt Alignment from CESAR GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt Alignment from Spaln_aa2Genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt Alignment from Spaln_nt2Genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt Alignment from Pairagon GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt Alignment from Exonerate_protein2genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt Alignment from Exonerate_coding2genome GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt Alignment from GeneWise GACGGATCTGTAGTTCTTGACTCTTGTGAAGTGTCAACAGAAAATGTACAAAGTACTCGATTTCCAAAACCTGAATTGGAGATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCCACACCAGTCACAATTAAGATCCCCAAGGCACGGAAGAGGAAGAGTGGTGAAGTGGAGGAG ggcgttactcaaattcaaaggagcctaaactgctgtgtgtgtctctgcagGATGGGTCTGTAGTTCTTGACTCTTGTGATGTATCAACAGAAAACATACAAAGTACTCGCTTTCCAAAACCTGAATTGGAAATTCAGTTTACACCTTTGCAGCCAAACAAAATGGCAGTGAAGCACCCTGGTTGTCCGACACCAGTCACAATTAAGATCCCCAAGGCTCGGAAGAGGAAGAGTGGTGAAGTGGAGGAGgtaagcaactacctggatagtcagtatctggatagttagtattgtttgtt #### Kif20b_ID7025_29 --> 0 - 1 Original Alignment GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAg cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAggtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from CESAR GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAg cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAggtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Spaln_aa2Genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Spaln_nt2Genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Pairagon GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Exonerate_protein2genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from Exonerate_coding2genome GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc Alignment from GeneWise GTTTCCGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGAGACTTCTTGCAGCATTCTCCAACAATTCTTCAATCAAAAG cccacagtcacccatgtgattattagtgtcgtgtccccccccccccccagGTTTCTGTTGGTCCATCATCTAAGAAAACTTACTCCTTACGGAGCCAAGCATCTACAGTTAGTGCAAACATAGCCTCTAAAAAAAGAGAGGGAACACTACAGAAATTTGGGGACTTCCTGCAGCATTCTCCAACAATTCTTCAATCAAAAGgtactggggagagtgaaatgaccttttcaattatatgcaatgtgtcttcc #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaacttc Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggacgtgg Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaacttc Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCTC---CTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaacttc Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCTC---CTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaacttc Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaacttc Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaacttc Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGTAGAGATGTGGTTGGGCCTCCT---GAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaacttc #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagaGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagaGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Exonerate_coding2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Pairagon GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctaggAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctaggAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctagGAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctagGAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctagGAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctagGAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctagGAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG gatggaataccacaacacacctactactcatcaattatttctatttctagGAGGCACACTCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAATTGGACAGAAgtgagtcagggagagaggtccagaggagagtgcctgggggacctcttatc #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCgg agtcagttttctgttccatggtcactctggaattttcttgccattcacagcCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from CESAR cCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCgg agtcagttttctgttccatggtcactctggaattttcttgccattcacagcCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Spaln_aa2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Spaln_nt2Genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Pairagon CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Exonerate_protein2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Exonerate_coding2genome CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from GeneWise CCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg #### Ldb1_ID9698_2 --> 2 - 2 Original Alignment gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg gagcactcccccctagcttaacacattataaattctctgcaaccccacaggtTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGgggtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa Alignment from CESAR gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg gagcactcccccctagcttaacacattataaattctctgcaaccccacaggtTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGgggtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa Alignment from Spaln_aa2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcactcccccctagcttaacacattataaattctctgcaaccccacagGTTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGGGgtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa Alignment from Spaln_nt2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcactcccccctagcttaacacattataaattctctgcaaccccacagGTTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGGGgtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa Alignment from Pairagon GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcactcccccctagcttaacacattataaattctctgcaaccccacagGTTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGGGgtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa Alignment from Exonerate_protein2genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcactcccccctagcttaacacattataaattctctgcaaccccacagGTTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGGGgtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa Alignment from Exonerate_coding2genome TGTGCCTGTCCTGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gagcactcccccctagcttaacacattataaattctcTGCAACCCCACAGGTTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGGGgtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa Alignment from GeneWise TCAGTGGGCTGTGCCTGTCCTGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG cactcccccctagcttaacacattataa---ATTCTCTGCAACCCCACAGGTTGTTCCTCAAAGTCATTTGAGCTGTACTCCCCAAAGGAACCTCCAAATGGCAATGCCTTTCCTCCTGTCCATCCTGGCACCATGCTGGATAGAGATGTGGGgtcagtcctttccattttcctggccctcgctaggtggaaattgcccagaa #### Lgals12_ID2187_6 --> 0 - 0 Original Alignment CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagCCCTTCTTGCTGTACAGTCCCAGGCTAgtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat Alignment from CESAR CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagCCCTTCTTGCTGTACAGTCCCAGGCTAgtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat Alignment from Spaln_aa2Genome CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagCCCTTCTTGCTGTACAGTCCCAGGCTAgtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat Alignment from Spaln_nt2Genome CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagCCCTTCTTGCTGTACAGTCCCAGGCTAgtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat Alignment from Pairagon CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagCCCTTCTTGCTGTACAGTCCCAGGCTAgtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat Alignment from Exonerate_protein2genome CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagCCCTTCTTGCTGTACAGTCCCAGGCTAgtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat Alignment from Exonerate_coding2genome ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagcccttcttgctgtacagtcccaggctagtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat Alignment from GeneWise CCCTTCCTGCTGTATAGCCCCAGGCTG ccctttgcccaagcaaatagtaaccattctgatgccttgccttgttgcagCCCTTCTTGCTGTACAGTCCCAGGCTAgtaagaaactctcactccaggcctctcctgaaggtgcagggaaattccat #### Lipf_ID6851_7 --> 0 - 0 Original Alignment AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagAGTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt Alignment from CESAR AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagAGTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt Alignment from Spaln_aa2Genome TCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagagTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt Alignment from Spaln_nt2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagAGTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt Alignment from Pairagon AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagAGTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt Alignment from Exonerate_protein2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagAGTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt Alignment from Exonerate_coding2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagAGTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt Alignment from GeneWise TCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagcattttttttttttaatttagagTTGCTTTGATGTGTATTTAGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtttcaaagctgtcagcattgatcctgagaagttgaatgctt #### Lipm_ID6882_2 --> 0 - 1 Original Alignment AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAg ctgttgagattgtggccatgtagtttgtattgtatttgtctttcatttagAGTGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTCCAACAGAAGATGGGTATATCCTATCTGTGAACAGGATCCCTCGAGGTCAGACTCAGCTAAAGAAGGAAggtgacacagactctcttaagcgtaaatctcttgttctgtgcacagtaaaa Alignment from CESAR AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAg ctgttgagattgtggccatgtagtttgtattgtatttgtctttcatttagAGTGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTCCAACAGAAGATGGGTATATCCTATCTGTGAACAGGATCCCTCGAGGTCAGACTCAGCTAAAGAAGGAAggtgacacagactctcttaagcgtaaatctcttgttctgtgcacagtaaaa Alignment from Spaln_aa2Genome AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctgttgagattgtggccatgtagtttgtattgtatttgtctttcatttagAGTGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTCCAACAGAAGATGGGTATATCCTATCTGTGAACAGGATCCCTCGAGGTCAGACTCAGCTAAAGAAGGAAGgtgacacagactctcttaagcgtaaatctcttgttctgtgcacagtaaaa Alignment from Spaln_nt2Genome AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctgttgagattgtggccatgtagtttgtattgtatttgtctttcatttagAGTGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTCCAACAGAAGATGGGTATATCCTATCTGTGAACAGGATCCCTCGAGGTCAGACTCAGCTAAAGAAGGAAGgtgacacagactctcttaagcgtaaatctcttgttctgtgcacagtaaaa Alignment from Pairagon AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctgttgagattgtggccatgtagtttgtattgtatttgtctttcatttagAGTGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTCCAACAGAAGATGGGTATATCCTATCTGTGAACAGGATCCCTCGAGGTCAGACTCAGCTAAAGAAGGAAGgtgacacagactctcttaagcgtaaatctcttgttctgtgcacagtaaaa Alignment from Exonerate_protein2genome AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctgttgagattgtggccatgtagtttgtattgtatttgtctttcatttagAGTGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTCCAACAGAAGATGGGTATATCCTATCTGTGAACAGGATCCCTCGAGGTCAGACTCAGCTAAAGAAGGAAGgtgacacagactctcttaagcgtaaatctcttgttctgtgcacagtaaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctgttgagattgtggccatgtagtttgtattgtatttgtctttcatttagAGTGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTCCAACAGAAGATGGGTATATCCTATCTGTGAACAGGATCCCTCGAGGTCAGACTCAGCTAAAGAAGGAAGgtgacacagactctcttaagcgtaaatctcttgttctgtgcacagtaaaa #### Lipm_ID6883_3 --> 2 - 2 Original Alignment gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag taagaagaatggagaacattcaatcaattcctactgctcttgttttacaggaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCaggtttgcgaacaatctcagtgcccctattatccctaatgtgagtgaatgtt Alignment from CESAR gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag taagaagaatggagaacattcaatcaattcctactgctcttgttttacaggaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCaggtttgcgaacaatctcagtgcccctattatccctaatgtgagtgaatgtt Alignment from Spaln_aa2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG taagaagaatggagaacattcaatcaattcctactgctcttgttttacagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtttgcgaacaatctcagtgcccctattatccctaatgtgagtgaatgtt Alignment from Spaln_nt2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG taagaagaatggagaacattcaatcaattcctactgctcttgttttacagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtttgcgaacaatctcagtgcccctattatccctaatgtgagtgaatgtt Alignment from Pairagon GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG taagaagaatggagaacattcaatcaattcctactgctcttgttttacagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtttgcgaacaatctcagtgcccctattatccctaatgtgagtgaatgtt Alignment from Exonerate_protein2genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG taagaagaatggagaacattcaatcaattcctactgctcttgttttacagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtttgcgaacaatctcagtgcccctattatccctaatgtgagtgaatgtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG taagaagaatggagaacattcaatcaattcctactgctcttgttttacagGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtttgcgaacaatctcagtgcccctattatccctaatgtgagtgaatgtt #### Lipm_ID6885_5 --> 2 - 0 Original Alignment gcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttacgcattatatagccaacaatggggcaaccttcctggcccccacaggcTTTATTGCATTTTCCACAATGCCAGAGCTAGCACATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagtgtgatacccaggttcttctgtctgtgaaaaaatcagaccaattc Alignment from CESAR gcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttacgcattatatagccaacaatggggcaaccttcctggcccccacaggcTTTATTGCATTTTCCACAATGCCAGAGCTAGCACATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagtgtgatacccaggttcttctgtctgtgaaaaaatcagaccaattc Alignment from Spaln_aa2Genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttacgcattatatagccaacaatggggcaaccttcctggcccccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCACATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagtgtgatacccaggttcttctgtctgtgaaaaaatcagaccaattc Alignment from Spaln_nt2Genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttacgcattatatagccaacaatggggcaaccttcctggcccccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCACATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagtgtgatacccaggttcttctgtctgtgaaaaaatcagaccaattc Alignment from Pairagon GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttacgcattatatagccaacaatggggcaaccttcctggcccccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCACATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagtgtgatacccaggttcttctgtctgtgaaaaaatcagaccaattc Alignment from Exonerate_protein2genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttacgcattatatagccaacaatggggcaaccttcctggcccccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCACATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagtgtgatacccaggttcttctgtctgtgaaaaaatcagaccaattc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG atttacgcattatatagccaacaatggggcaaccttcctggcccccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCACATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgagtgtgatacccaggttcttctgtctgtgaaaaaatcagaccaattc #### Lipm_ID6886_6 --> 0 - 0 Original Alignment GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctcccagaggttcttgtgatgaaacttaacagtttcttcctttgatcagGTACTATTTGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTCTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAATATCATCTTGCTCTTAGGAGGTTTTAACACAAACAATACGAACATGgtacaagggcatattatctgctaaggcagaagttaagagttttgcagaat Alignment from CESAR GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctcccagaggttcttgtgatgaaacttaacagtttcttcctttgatcagGTACTATTTGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTCTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAATATCATCTTGCTCTTAGGAGGTTTTAACACAAACAATACGAACATGgtacaagggcatattatctgctaaggcagaagttaagagttttgcagaat Alignment from Spaln_aa2Genome GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctcccagaggttcttgtgatgaaacttaacagtttcttcctttgatcagGTACTATTTGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTCTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAATATCATCTTGCTCTTAGGAGGTTTTAACACAAACAATACGAACATGgtacaagggcatattatctgctaaggcagaagttaagagttttgcagaat Alignment from Spaln_nt2Genome GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctcccagaggttcttgtgatgaaacttaacagtttcttcctttgatcagGTACTATTTGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTCTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAATATCATCTTGCTCTTAGGAGGTTTTAACACAAACAATACGAACATGgtacaagggcatattatctgctaaggcagaagttaagagttttgcagaat Alignment from Pairagon GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctcccagaggttcttgtgatgaaacttaacagtttcttcctttgatcagGTACTATTTGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTCTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAATATCATCTTGCTCTTAGGAGGTTTTAACACAAACAATACGAACATGgtacaagggcatattatctgctaaggcagaagttaagagttttgcagaat Alignment from Exonerate_protein2genome GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctcccagaggttcttgtgatgaaacttaacagtttcttcctttgatcagGTACTATTTGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTCTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAATATCATCTTGCTCTTAGGAGGTTTTAACACAAACAATACGAACATGgtacaagggcatattatctgctaaggcagaagttaagagttttgcagaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTATTTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAATATGAACATG tctcccagaggttcttgtgatgaaacttaacagtttcttcctttgatcagGTACTATTTGGCAGACAAGAGTTTTTATACCAGACCAGATTTTTCAGGCAGCTTTTTATTTACCTCTGTGGTCAGATGATTCTTGACCAAATCTGTAGCAATATCATCTTGCTCTTAGGAGGTTTTAACACAAACAATACGAACATGgtacaagggcatattatctgctaaggcagaagttaagagttttgcagaat #### Lipm_ID6888_8 --> 0 - 0 Original Alignment GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactatagcccaagtccctttttcatgtgaatgtattttctttttagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtgagcttgtcaagttatattcacacaattaaaaagtcgcaccaacctta Alignment from CESAR GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactatagcccaagtccctttttcatgtgaatgtattttctttttagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtgagcttgtcaagttatattcacacaattaaaaagtcgcaccaacctta Alignment from Spaln_aa2Genome GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactatagcccaagtccctttttcatgtgaatgtattttctttttagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtgagcttgtcaagttatattcacacaattaaaaagtcgcaccaacctta Alignment from Spaln_nt2Genome GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactatagcccaagtccctttttcatgtgaatgtattttctttttagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtgagcttgtcaagttatattcacacaattaaaaagtcgcaccaacctta Alignment from Pairagon GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactatagcccaagtccctttttcatgtgaatgtattttctttttagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtgagcttgtcaagttatattcacacaattaaaaagtcgcaccaacctta Alignment from Exonerate_protein2genome GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactatagcccaagtccctttttcatgtgaatgtattttctttttagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtgagcttgtcaagttatattcacacaattaaaaagtcgcaccaacctta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAG cataactatagcccaagtccctttttcatgtgaatgtattttctttttagGCTGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGgtgagcttgtcaagttatattcacacaattaaaaagtcgcaccaacctta #### Lipn_ID6874_6 --> 0 - 0 Original Alignment CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct Alignment from CESAR CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct Alignment from Spaln_aa2Genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct Alignment from Spaln_nt2Genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct Alignment from Pairagon CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct Alignment from Exonerate_protein2genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct Alignment from Exonerate_coding2genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct Alignment from GeneWise CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG atactaagtattctaggagagagctcttttgatattttcttttatttcagCTTGTGTTTGGCACCAAAGATGTGCTTTTGGAGGATAAGAATGCAAGGATGTCATTTATTACATTCTGCAACCAAAAGTTACTCCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGgtagggataggtggtatatatagtaattatatacctgtgttatggggtct #### Lipo1_ID6827_6 --> 0 - 0 Original Alignment CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga Alignment from CESAR CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga Alignment from Spaln_aa2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga Alignment from Spaln_nt2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga Alignment from Pairagon CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga Alignment from Exonerate_protein2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga Alignment from Exonerate_coding2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga Alignment from GeneWise CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcaatacactttctcacactaaactgcgtccccaccttcttccctccagCTTCTCTTTGGTGAAAAAGAATTTTTTCCTGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACGGCCATATGTGCTGCTATCATGGAATCAATGGGTGGTTATTCTCCAGACCAGTTAAATAAGgtgagtgttcttttctgtcaaactctacattagtgcgtgtgtgtttgtga #### Lipo1_ID6830_3 --> 2 - 2 Original Alignment ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTaggtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag Alignment from CESAR ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTaggtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag Alignment from Spaln_aa2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTAGgtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag Alignment from Spaln_nt2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACG---TGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTAGgtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag Alignment from Pairagon CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAAC---ACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTAGgtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag Alignment from Exonerate_protein2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTAGgtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag Alignment from Exonerate_coding2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTAGgtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag Alignment from GeneWise CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtcatggcatactatttgcatgagtgctttgctcttctcctgtccacagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTGTGAACAGCCTGGCTTTTATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGATGTGGCCCTCAACCCAGACTCTAAAGAGTTTTGGGATTTTAGgtgagtaatcattccacttttacttttagtttaatagttttgtcaagaag #### Loxl4_ID8560_13 --> 0 - 1 Original Alignment GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAg gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGggtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt Alignment from CESAR GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAg gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGggtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt Alignment from Spaln_aa2Genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGGgtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt Alignment from Spaln_nt2Genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGGgtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt Alignment from Pairagon GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGGgtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt Alignment from Exonerate_protein2genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGGgtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt Alignment from Exonerate_coding2genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGGgtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt Alignment from GeneWise GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatgaagtcctccagaaactccgtactaagagtccctttcttctccagGTGGTTGTGAACCCCACAAATGATGTTGCAGAGTCTGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCCACACGGgtgagggcagcaatgcatagaaaagcattaacaagtacccattgatatgt #### Loxl4_ID8562_11 --> 1 - 1 Original Alignment gCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAg tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcaggCACTACCACAGTATTGAAGTATTCACTCATTATGACCTA------CTGAATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAggtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt Alignment from CESAR gCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAg tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcaggCACTACCACAGTATTGAAGTATTCACTCATTATGACCTA------CTGAATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAggtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt Alignment from Spaln_aa2Genome GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcagGCACTACCACAGTATTGAAGTATTCACTCATTATGACCTA------CTGAATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAGgtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt Alignment from Spaln_nt2Genome GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcagGCACTACCACAGTATTGAAGTATTCACTCATTATGACCTA------CTGAATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAGgtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt Alignment from Pairagon GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcagGCACTACCACAGTATTGAAGTATTCACTCATTATGACCT------ACTGAATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAGgtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt Alignment from Exonerate_protein2genome GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcagGCACTACCACAGTATTGAAGTATTCACTCATTATGACCTA------CTGAATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAGgtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt Alignment from Exonerate_coding2genome GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcagGCACTACCACAGTATTGAAGTATTCACTCATTATGACCTA------CTGAATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAGgtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt Alignment from GeneWise GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG tctgctggtgaccctctcctgcgggcctgtgtctcttcttttccgctcagGCACTACCACAGTATTGAAGTATTCACTCATTATGACCTACTG------AATGGCTCAAAGGTGGCTGAGGGACATATGGCCAGTTTCTGTCTAGAAGATGCAAATTGTCCATCAGgtatttaggtctctatttgcttcacttcctggtgtattttgaatggattt #### Loxl4_ID8566_9 --> 0 - 1 Original Alignment GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACa acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACagtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac Alignment from CESAR GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACa acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACagtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac Alignment from Spaln_aa2Genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACAgtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac Alignment from Spaln_nt2Genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACAgtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac Alignment from Pairagon GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACAgtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac Alignment from Exonerate_protein2genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACAgtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac Alignment from Exonerate_coding2genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACAgtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac Alignment from GeneWise GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA acatgtaacaattgtactatgctacctgttgttctgtttgtctctgtcagGACACTTGGTACTGGCATGGGACACCAGAGGCCAAAGAAGTAGTGATGAGTGATGTTCGCTGTGCAGGGACAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCCGTGCATTGTTCTCATGGCCCTGGACGCTTCTCAGCTGGGATTGCTTGTATGAACAgtgagcgaaggataaacaggtggttgggttagggagctgagacaggggac #### Loxl4_ID8569_6 --> 0 - 1 Original Alignment CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAggtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg Alignment from CESAR CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAg catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAggtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg Alignment from Spaln_aa2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg Alignment from Spaln_nt2Genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg Alignment from Pairagon CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg Alignment from Exonerate_protein2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg Alignment from Exonerate_coding2genome CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg Alignment from GeneWise CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG catcagagactaggattgcccatctgtatctccttgccctcaaaccacagCAGGAGCTAAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTCCTTATGAACCGTCAGTGGGGCACAGTCTGCGACCACAGGTGGAACCTTATTTCAGCCAGTCTTGTGTGTCACCAGCTTGGCTTTGGCTCTGCTCGGGAGGCCCTTTTTGGAGCCCAGTTGGGACAAGgtaaggaaagaaagattcagggtgcttcaaaaggcctggaggcaccatgg #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcata Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcact Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcata Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcata Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcata Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcata Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcata Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcaggtatattctgctacacagccccgtgttttctgttcctctccttcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtatgggaagccccacactgacagcacacatgcactaactgataatcata #### Lpxn_ID3474_7 --> 0 - 1 Original Alignment AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAg acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAggtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac Alignment from CESAR AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAg acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAggtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac Alignment from Spaln_aa2Genome AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAG acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAGgtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac Alignment from Spaln_nt2Genome AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAG acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAGgtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac Alignment from Pairagon AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAG acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAGgtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac Alignment from Exonerate_protein2genome AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAG acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAGgtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac Alignment from Exonerate_coding2genome AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAG acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAGgtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac Alignment from GeneWise AAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAG acagcacacatgcactaactgataatcacttcccacttttgttgtcacagAAAGTGCTGACAGCAATTAACAAGACATGGCACCCAGAGCACTTTTTCTGCTCTTATTGTGGAGAGGTATTTGGTGCAGAAGgtaagtgagcgccaaccatgcacacgggagagagatcagagtgcccacac #### Lrp5_ID107_17 --> 2 - 1 Original Alignment caGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTg ttatcactgacatagagcctagcctactcgtctgccactctgccccacagcaGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTggtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa Alignment from CESAR caGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTg ttatcactgacatagagcctagcctactcgtctgccactctgccccacagcaGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTggtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa Alignment from Spaln_aa2Genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG ttatcactgacatagagcctagcctactcgtctgccactctgccccacagCAGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTGgtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa Alignment from Spaln_nt2Genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG ttatcactgacatagagcctagcctactcgtctgccactctgccccacagCAGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTGgtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa Alignment from Pairagon CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG ttatcactgacatagagcctagcctactcgtctgccactctgccccacagCAGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTGgtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa Alignment from Exonerate_protein2genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG ttatcactgacatagagcctagcctactcgtctgccactctgccccacagCAGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTGgtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa Alignment from Exonerate_coding2genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG ttatcactgacatagagcctagcctactcgtctgccactctgccccacagCAGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTGgtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa Alignment from GeneWise CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG ttatcactgacatagagcctagcctactcgtctgccactctgccccacagCAGCTCATCCTTGTGCCCGTGACAATGGTGGCTGCTCCCACATCTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAATCTGTTGACTTGTGGTGgtaagtgagaacctaggaaccccaagcagggggctgcgtcacagccttaa #### Lrp5_ID109_15 --> 1 - 1 Original Alignment gTAC---ATGTACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTg acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagaTACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTggtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt Alignment from CESAR gTACATG---TACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTg acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagaTACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTggtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt Alignment from Spaln_aa2Genome GTAC---ATGTACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTG acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagATACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTGgtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt Alignment from Spaln_nt2Genome GTACATG---TACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTG acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagATACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTGgtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt Alignment from Pairagon GTAC---ATGTACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTG acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagATACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTGgtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt Alignment from Exonerate_protein2genome GTAC---ATGTACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTG acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagATACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTGgtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt Alignment from Exonerate_coding2genome GTAC---ATGTACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTG acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagATACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTGgtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt Alignment from GeneWise GTACATG---TACTTTACCAACATGCAGGACCATGCTGCCAAGATCGAGCGAGCCTCCCTGGATGGCACAGAGCGGGAGGTCCTCTTCACCACAGGCCTCATCCGTCCCGTGGCCCTTGTGGTGGACAATGCTCTGGGCAAGCTCTTCTGGGTGGATGCCGACCTAAAGCGAATCGAAAGCTGTGACCTCTCTG acggcccacttcttccttgcagctctgaactttgtcttttccgtttgtagATACATGATGTACTTTACTAACATGCATGACCATGCTGCTAAGATTGAGAGAGCCTCCCTTGATGGCACAGAGCGGGAGGTCCTCTTCACCACTGGCCTCATCCAACCTGTGGCCCTTGTGGTGGACAATGCTGTGGGCAAGCTCTTCTGGGTGGATGCTGACCTAAAGCGAATTGAAAGCTGTGACCTCGCTGgtaatatggaaattaccactcagtttgtaactgttgggggtgatcctagt #### Lrp5_ID111_13 --> 2 - 0 Original Alignment cgCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagcgCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac Alignment from CESAR cgCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagcgCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac Alignment from Spaln_aa2Genome CGCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagCGCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac Alignment from Spaln_nt2Genome CGCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagCGCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac Alignment from Pairagon CGCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagCGCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac Alignment from Exonerate_protein2genome CGCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagCGCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac Alignment from Exonerate_coding2genome CGCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagCGCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac Alignment from GeneWise CGCCCTCCACCTTCTTGCTGTTCAGCCAGAAATTTGCCATCAGCCGGATGATCCCCGATGACCAGCTCAGCCCGGACCTTGTCCTACCCCTTCATGGGCTGAGGAACGTCAAAGCCATCAACTATGACCCGCTGGACAAGTTCATCTACTGGGTGGACGGGCGCCAGAACATCAAGAGGGCCAAGGACGACGGTACCCAG cccactcttgctgatgcttggaacttggtaaattatttctggctttatagCGCCCTCCACTTTCTTGCTATTCAGCCAGAAATTTGCCATCAGCCGAATGATCCCCGATGACCAACTCAGCCCAGACCTTGTCCTACCCCTACATGGGCTGGGGAACGTCAAAGCCATCAACTATGACCCACTGGACAAGTTCATCTACTGGGTAGATGGGCGCCAGAACATCAAGAGGGCCAAGGATGACGGTACCCAGgtaaaaccttctgggtgttgggggcaggaagtgccatgcacatagtttac #### Lrp5_ID116_8 --> 0 - 1 Original Alignment GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCg ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTggtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat Alignment from CESAR GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCg ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTggtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat Alignment from Spaln_aa2Genome GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCG ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTGgtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat Alignment from Spaln_nt2Genome GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCG ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTGgtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat Alignment from Pairagon GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCG ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTGgtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat Alignment from Exonerate_protein2genome GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCG ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTGgtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat Alignment from Exonerate_coding2genome GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCG ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTGgtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat Alignment from GeneWise GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCG ctgatgatagctgatctcctgtggcacaattgtgttgtttgcttttttagGTAATCAACATAGATGGCACAAAGCGGAAGACCCTGCTTGAAGACAAGCTTGCACATATTTTTGGGTTCACACTGTTGGGGGACTTTATTTACAGGACTGACTGGCCACGACGCAGTATTGAAAGGGTGCACAAGGTCAATGCTAGCCGGGATGTTATCGTTGATCAACTCCCTGACCTGATGGGACTCAAAGCTGTGAATGTTGCCAAGGTTGTTGgtgagccctcaagctctgaaccatggttgcactcatccagttggtcccat #### Lrp5_ID118_6 --> 2 - 2 Original Alignment ggGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGgg gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagggGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGgggtagtcactaggacagtaggtaggcactgggattagtcttgctgcctctc Alignment from CESAR ggGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGgg gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagggGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGgggtagtcactaggacagtaggtaggcactgggattagtcttgctgcctctc Alignment from Spaln_aa2Genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagGGGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtagtcactaggacagtaggtaggcactgggattagtcttgctgcctctc Alignment from Spaln_nt2Genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagGGGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtagtcactaggacagtaggtaggcactgggattagtcttgctgcctctc Alignment from Pairagon GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagGGGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtagtcactaggacagtaggtaggcactgggattagtcttgctgcctctc Alignment from Exonerate_protein2genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagGGGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtagtcactaggacagtaggtaggcactgggattagtcttgctgcctctc Alignment from Exonerate_coding2genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagGGGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtagtcactaggacagtaggtaggcactgggattagtcttgctgcctctc Alignment from GeneWise GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGGC-- gcctcagccacagaagtaggctcctgacctctccatctctctcttcacagGGGCAGAGCAAGTACTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACCCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTACGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCGCAGACGCTAGTGAACACTGAAATCAATGATCCTGATGGCATTGTGGTGGACTGGGTCGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGGTAgtcactaggacagtaggtaggcactgggattagtcttgctgcctctc #### Ltbp3_ID1250_2 --> 2 - 1 Original Alignment tgGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAg ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagtaGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAggtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt Alignment from CESAR tgGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAg ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagtaGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAggtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt Alignment from Spaln_aa2Genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagTAGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt Alignment from Spaln_nt2Genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagTAGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt Alignment from Pairagon TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagTAGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt Alignment from Exonerate_protein2genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagTAGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt Alignment from Exonerate_coding2genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagTAGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt Alignment from GeneWise --GTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG ttctctttgtccctgtaagaaaccatgatatcctctccaccctcttctagTAGTGTGCCCTTTACCCTGCATGAATGGTGGCCAGTGCTCTTCCCGAAACCAGTCCCTGTGTCCCCCAGCATTCACAGGTCGCTTTTGCCAGGTGCCTGCTGCAGGGACTGGGGCTGGCTCTGGGAGTTTAGGCCCCGGTTTGGCCCGGACTGGAGCTATGTCCACAGGCCCACTCCCACCCCTTGCCCCAGAAGGAGAATCTGTGACTAGCAAGCACGCCATTTATGCAGTGCAGGTGATTGCAGATCCTCCTGGCCCAGGAGAGGGCCCGCCTGCTCAGCATGCAGCCTTCTTGGTGCCTCTGGGGCGAGGACAAATCTCAGCAGAAGgtaagcggagaagagcaagcaaccccaaaactactaaagaactattaatt #### Ltbp3_ID1256_8 --> 2 - 1 Original Alignment caGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagcaGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAggtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg Alignment from CESAR caGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagcaGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAggtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg Alignment from Spaln_aa2Genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagCAGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAGgtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg Alignment from Spaln_nt2Genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagCAGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAGgtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg Alignment from Pairagon CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagCAGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAGgtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg Alignment from Exonerate_protein2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagCAGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAGgtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg Alignment from Exonerate_coding2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagCAGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAGgtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg Alignment from GeneWise CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGA- tgtaccagtccaggactacgcttattgacatcactgctctctctgtccagCAGCCTTCAAGGAGATCTGTCCAGCTGGGAAGGGGTATCATACTCTCACCTCCCACCAGATGCTAACCATCCAGGGAGAAAGCGACTTCTCCCTTTTTGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGCCGGGCACCGCCCCTAGAGGACACAGAGGAAGAGAGAGgtatgtctaaatgcaatcactccagatacaagaactcaaaggttatccgg #### Ltbp3_ID1264_16 --> 2 - 1 Original Alignment atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg cctagagcatttgagaggccagggcacacgctcacccactctcttcccagacATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAggtgagacactgcaagctggggggaccatatactcagagattcacagaggt Alignment from CESAR atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg cctagagcatttgagaggccagggcacacgctcacccactctcttcccagacATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAggtgagacactgcaagctggggggaccatatactcagagattcacagaggt Alignment from Spaln_aa2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctagagcatttgagaggccagggcacacgctcacccactctcttcccagACATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAGgtgagacactgcaagctggggggaccatatactcagagattcacagaggt Alignment from Spaln_nt2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctagagcatttgagaggccagggcacacgctcacccactctcttcccagACATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAGgtgagacactgcaagctggggggaccatatactcagagattcacagaggt Alignment from Pairagon ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctagagcatttgagaggccagggcacacgctcacccactctcttcccagACATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAGgtgagacactgcaagctggggggaccatatactcagagattcacagaggt Alignment from Exonerate_protein2genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctagagcatttgagaggccagggcacacgctcacccactctcttcccagACATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAGgtgagacactgcaagctggggggaccatatactcagagattcacagaggt Alignment from Exonerate_coding2genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctagagcatttgagaggccagggcacacgctcacccactctcttcccagACATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAGgtgagacactgcaagctggggggaccatatactcagagattcacagaggt Alignment from GeneWise ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctagagcatttgagaggccagggcacacgctcacccactctcttcccagACATCAATGAATGCCCTGAGGGTACGCCTTGCTGTCCTGAATGGTGTGAGAACCTTCCGGGTTCCTACTGCTGCACATGTGCCCATGGATATGAACCTGCACAGGATTGTCTCAGTTGCATAGgtgagacactgcaagctggggggaccatatactcagagattcacagaggt #### Ltbp3_ID1271_23 --> 2 - 1 Original Alignment acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagatTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGggtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from CESAR acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagatTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGggtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Spaln_aa2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Spaln_nt2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Pairagon ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Exonerate_protein2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Exonerate_coding2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from GeneWise ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg GTACTggtaacctatccctgatggatgaaccttttcatcttgtgcttcagggTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGGT---------CGAggtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttg Alignment from CESAR GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg GTACTggtaagatatccctgatggatgaaccttttcatcttgtgcttcagggTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGGT---------CGAggtgagtgaggctaaggggccaaacgtatagaagcccacttttagatgcct Alignment from Spaln_aa2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaacctatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGGT---------CGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttg Alignment from Spaln_nt2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaacctatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGG---------TCGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttg Alignment from Pairagon GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaacctatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGG---------TCGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttg Alignment from Exonerate_protein2genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCC GTACTGgtaacctatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGGTCGAGGTGAgtgaggctaaggggccaaacgtatagaagcccacttttagattttg Alignment from Exonerate_coding2genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCC GTACTGgtaacctatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGGTCGAGGTGAgtgaggctaaggggccaaacgtatagaagcccacttttagattttg Alignment from GeneWise GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtaacctatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCGGT---------CGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttg #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Spaln_aa2Genome -TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagCTCACTCGCAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Spaln_nt2Genome GTCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagCTCACTCGCAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Exonerate_coding2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from GeneWise ----CCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagCTCACTCGCAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg #### Macrod1_ID2007_3 --> 2 - 1 Original Alignment ggCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTg gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctaggcCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTggtaagttacacttagcctggtgggacatgttaggcctgactggcgttcca Alignment from CESAR ggCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTg gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctaggcCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTggtaagttacacttagcctggtgggacatgttaggcctgactggcgttcca Alignment from Spaln_aa2Genome GGCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTG gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctagGCCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTGgtaagttacacttagcctggtgggacatgttaggcctgactggcgttcca Alignment from Spaln_nt2Genome GGCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTG gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctagGCCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTGgtaagttacacttagcctggtgggacatgttaggcctgactggcgttcca Alignment from Pairagon GGCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTG gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctagGCCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTGgtaagttacacttagcctggtgggacatgttaggcctgactggcgttcca Alignment from Exonerate_protein2genome GGCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTG gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctagGCCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTGgtaagttacacttagcctggtgggacatgttaggcctgactggcgttcca Alignment from Exonerate_coding2genome GGCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTGCCAACAGCTCCCTGCTTGGAGGCGGAGG gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctagGCCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTGGTAAGTTACACTTAGCCTGGTGGGACATgttaggcctgactggcgttcca Alignment from GeneWise GGCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTG gatgggacatcggaggcttttgtgcgacttctgtcctttgttctttctagGCCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGATAAGCAACTTAATGAGAAAATCACTCTGTACCGTGGGGACATCACCAAACTGGAAGTGGATGCCATTGTCAATGCTGgtaagttacacttagcctggtgggacatgttaggcctgactggcgttcca #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagatGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgttgctcact Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagatGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgtatagtctg Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgttgctcact Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgttgctcact Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgttgctcact Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgttgctcact Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGC--TCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCT caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTGTGTGTTTCAAGTGGTAGAAGCGTCATGTCAAGGCTgtacgttgctcact Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caaaagagaatgattgaaagattgaaactgacttgcgtttatccctgcagATGTCATCCACACGGTGGGGCCCATTGCAGTGGGCCGACCAACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGCTACGTCCAGTTgtgtgtttcaagtggtagaagcgtcatgtcaaggctgtacgttgctcact #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatcttgatgcagttgcctt Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatcttttggtgtcctcttc Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGgtaggaacccattcctcctatgctcttggacatcttgatgcagttgcctt Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatcttgatgcagttgcctt Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatcttgatgcagttgcctt Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatcttgatgcagttgcctt Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatcttgatgcagttgcctt Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatcttgatgcagttgcctt #### Mamdc2_ID5145_8 --> 2 - 1 Original Alignment ggCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACG------ACAGGAACAg tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagggCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGTAAAC------ATGTATAGAGCTGGAGACCACACAACAGGAACAGGAACGggtgacttggtgggggctgatagttcttggtttgttctatgggacaaatta Alignment from CESAR ggCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACA------g tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagggCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGTA------AACATGTATAGAGCTGGAGACCACACAACAGGAACAGGAACGggtgacttggtgggggctgatagttcttggtttgttctatgggacaaatta Alignment from Spaln_aa2Genome GGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACA------G tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagGGCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGTA------AACATGTATAGAGCTGGAGACCACACAACAGGAACAGGAACGGgtgacttggtgggggctgatagttcttggtttgttctatgggacaaatta Alignment from Spaln_nt2Genome GGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACAG------ tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagGGCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGTAAA------CATGTATAGAGCTGGAGACCACACAACAGGAACAGGAACGGgtgacttggtgggggctgatagttcttggtttgttctatgggacaaatta Alignment from Pairagon GGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACAG-------------- tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagGGCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGT------AAACATGTATAGAGCTGGAGACCACACAACAGGAACAGGAACGGGTGACTTGgtgggggctgatagttcttggtttgttctatgggacaaatta Alignment from Exonerate_protein2genome GGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACAG tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagGGCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGTA------AACATGTATAGAGCTGGAGACCACACAACAGGAACAGgaacgggtgacttggtgggggctgatagttcttggtttgttctatgggacaaatta Alignment from Exonerate_coding2genome GGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACAG tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagGGCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGTA------AACATGTATAGAGCTGGAGACCACACAACAGGAACAGgaacgggtgacttggtgggggctgatagttcttggtttgttctatgggacaaatta Alignment from GeneWise GGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAACTTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAGACCACACGACAGGAACAGGG---- tatgcgaatttggcctaattgtaactttcacatgtgcttttgcattgcagGGCTTCCCTTCAGTGCTGTGGAAACTAGCTGTGAGTTTGAGATAGGCCTCTGTAACTTTTATCAGGACAAAGAGGGTCTTGGTTGGACCAGAGTAAGGGTA------AACATGTATAGAGCTGGAGACCACACAACAGGAACAGGAACGGgtgacttggtgggggctgatagttcttggtttgttctatgggacaaatta #### Mamdc2_ID5151_4 --> 0 - 1 Original Alignment ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTg gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTggtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg Alignment from CESAR ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTg gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTggtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg Alignment from Spaln_aa2Genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg Alignment from Spaln_nt2Genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg Alignment from Pairagon ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg Alignment from Exonerate_protein2genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg Alignment from Exonerate_coding2genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg Alignment from GeneWise ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG gggagcacagtgttttgatgcctgattccttttaaaaatcaatttttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagcactagtagtgatttagatgcaggatcaaagaatcaaatcacatg #### Mamdc2_ID5152_3 --> 2 - 0 Original Alignment gcCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcaggaCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc Alignment from CESAR gcCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcaggaCATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc Alignment from Spaln_aa2Genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcagGACATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc Alignment from Spaln_nt2Genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcagGACATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc Alignment from Pairagon GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcagGACATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc Alignment from Exonerate_protein2genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcagGACATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc Alignment from Exonerate_coding2genome GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcagGACATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc Alignment from GeneWise GCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTCCACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG tggcccacagagtatggtcaaatgtgaaaccatcttctctcctcttgcagGACATTATGTCTATATGGACACCTCTTTTGCTAGGCAAGGGGAGAAAGCTGTGCTGCTGAGTTCTGATCTGCAAGCCGAGGAGTGGAACTGTTTGCGCCTTGTCTACCAGATAACCACACCTCCAGGGTCTGTGTCAGACCCCAGCCAGCTGAACCTCTATGTAAGATTTGAAGATGAGAGTTTTGATCGCTTGTTGTGGTCCACTAAGGAGCCTTCAGATAGCTGGCTCATAGCTGGCCTGGATCTTCAAAACAGCTCGAAGAAATTCAAGgtaagctgagttggaggggaagatgtgggatgtgtgtaacatgtgaggtc #### Mamdc2_ID5165_2 --> 2 - 1 Original Alignment ccTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAg tctatgttagcaggcagtagtccaggctaatgtgtcctgtctttatctagccTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAggtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt Alignment from CESAR ccTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAg tctatgttagcaggcagtagtccaggctaatgtgtcctgtctttatctagccTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAggtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt Alignment from Spaln_aa2Genome CCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAG tctatgttagcaggcagtagtccaggctaatgtgtcctgtctttatctagCCTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAGgtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt Alignment from Spaln_nt2Genome CCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAG tctatgttagcaggcagtagtccaggctaatgtgtcctgtctttatctagCCTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAGgtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt Alignment from Pairagon CCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAG tctatgttagcaggcagtagtccaggctaatgtgtcctgtctttatctagCCTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAGgtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt Alignment from Exonerate_protein2genome CCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAG tctatgttagcaggcagtagtccaggctaatgtgtcctgtctttatctagCCTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAGgtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt Alignment from Exonerate_coding2genome GCCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAG tctatgttagcaggcagtagtccaggctaatgtgtcctgtctttatctaGCCTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAGgtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt Alignment from GeneWise CTACTAGAAGGGGTCCTGCTGGTAGTGCAAGCCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTGGCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAATGAGGAAG tctatgttagcaggcagtaGTCCAGGCTAATGTGTCCTGTCTTTATCTAGCCTTGCAGCTTGCCAATGCTCTAGACTTGCCTGCTGGCTCCTGCACCTTTGAAGAGGACACATGTGGCTTCGACTCTGTCTTTGCATTTCTGCCCTGGATATTAAATCAGGAAGgtcagtggagtatgtagttacatacttgaggaccttctcatattgcaagt #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGggtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGggtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctaggacaattcctagataaattaacctcacatctctctggccctctcagGAACTACTTAGTCGAGAGGAGGAACTGACATGGGCTGCACGTGTGCAACGGTCCCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGTGCGCTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGGAGAACGCATCAGCATGCCCCTGGgtatgagctggggcttcaatgcctgcctgcaatttgttattgttggtggc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg cttacctgtccccctgatgatccttgacttggctccccgttgttttccaggGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtgagccctcacccacagctgagataccctttttccagcctaccgtatga Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg cttacctgtccccctgatgatccttgacttggctccccgttgttttccaggGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtgagccctcacccacagctgagataccctttttccagcctaccgtatga Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttacctgtccccctgatgatccttgacttggctccccgttgttttccagGGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagccctcacccacagctgagataccctttttccagcctaccgtatga Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttacctgtccccctgatgatccttgacttggctccccgttgttttccagGGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagccctcacccacagctgagataccctttttccagcctaccgtatga Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttacctgtccccctgatgatccttgacttggctccccgttgttttccagGGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagccctcacccacagctgagataccctttttccagcctaccgtatga Alignment from Exonerate_protein2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttacctgtccccctgatgatccttgacttggctccccgttgttttccagGGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagccctcacccacagctgagataccctttttccagcctaccgtatga Alignment from Exonerate_coding2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttacctgtccccctgatgatccttgacttggctccccgttgttttccagGGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagccctcacccacagctgagataccctttttccagcctaccgtatga Alignment from GeneWise -GCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttacctgtccccctgatgatccttgacttggctccccgttgttttccagGGCTCTGATGCTCATGTCAAAGAGTAGCTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagccctcacccacagctgagataccctttttccagcctaccgtatga #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGtgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg Alignment from CESAR ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGtgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg Alignment from Pairagon ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg Alignment from Exonerate_protein2genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg Alignment from Exonerate_coding2genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg Alignment from GeneWise ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT catctgtcatttgtgttttttcacaggcttttgtggttttcctgttgtagACCCATGATATGTTTCCAGACACCATTCATTCCCGTAGCCATCATGGTCCTGCTGAAAGGACTCCTTCAGAGATCCAGTgtaatgcttctggtagcaataaatgcccatttgatcagttgtcatctggg #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgggtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgggtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Pairagon TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg TGGAGAAGgtaggtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAggtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from CESAR TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg TGGAGAAGgtaattcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAggtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Spaln_aa2Genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtaggtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Spaln_nt2Genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtaggtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Pairagon TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtaggtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Exonerate_protein2genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtaggtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Exonerate_coding2genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtaggtcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from GeneWise TGGAGAAG------------------------------------------CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG TGGAGAAGGTAGGTCTTGTTGGCCCTCCTGACCCTCTTCTTTGCCCACAGCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAggtaagctactgaattgttgccattcaaagcacatattggattgatgttta Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAggtaagctactgaattgttgccattcaaagcacatattggattgatgttta Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagctactgaattgttgccattcaaagcacatattggattgatgttta Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagctactgaattgttgccattcaaagcacatattggattgatgttta Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagctactgaattgttgccattcaaagcacatattggattgatgttta Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagctactgaattgttgccattcaaagcacatattggattgatgttta Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagctactgaattgttgccattcaaagcacatattggattgatgttta Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG atatgtaacccctgaggtagtaactcaagctcctatcaattttgtttcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACTCAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagctactgaattgttgccattcaaagcacatattggattgatgttta #### Mark2_ID2120_2 --> 0 - 0 Original Alignment CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgagtgagacttctttgtcttctttatattcttgctctcctttccagCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact Alignment from CESAR CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgagtgagacttctttgtcttctttatattcttgctctcctttccagCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact Alignment from Spaln_aa2Genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgagtgagacttctttgtcttctttatattcttgctctcctttccagCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact Alignment from Spaln_nt2Genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgagtgagacttctttgtcttctttatattcttgctctcctttccagCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact Alignment from Pairagon CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgagtgagacttctttgtcttctttatattcttgctctcctttccagCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact Alignment from Exonerate_protein2genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgagtgagacttctttgtcttctttatattcttgctctcctttccagCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact Alignment from Exonerate_coding2genome GCTCGGACCCCCCTACCCACGCTGAACGAAAGGGACACGGAGCAGCCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgAGTGAGACTTCTTTGTCTTCTTTATATTCTTGCTCTCCTTTCCAGCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact Alignment from GeneWise CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG aactgagtgagacttctttgtcttctttatattcttgctctcctttccagCCTACGTTAGGGCACCTTGATTCTAAGCCCAGCAGTAAGTCCAACATGCTTCAGGGCCGCAACTCAGCTACATCTGCTGACGAGCAGCCCCATATTGGCAACTACCAGCTCCTTAAGACCATTGGCAAGGGCAACTTTGCTAAGGTGAAGTTGGCTCGGCACATCCTGACAGGGAAAGAGgtaggcactggggtcagggcattacattcccagcatgcagtgctgtgact #### Mgea5_ID9585_13 --> 0 - 2 Original Alignment GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACaa tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATaagtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta Alignment from CESAR GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACaa tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATaagtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta Alignment from Spaln_aa2Genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATAAgtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta Alignment from Spaln_nt2Genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATAAgtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta Alignment from Pairagon GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATAAgtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta Alignment from Exonerate_protein2genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATAAgtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta Alignment from Exonerate_coding2genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATAAgtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta Alignment from GeneWise GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA tattcatgctttgtaataacctcttcataacagtgtcttttctccttcagGCTTCTGTGTACCAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATCCAGAGTCAGCCCGACCTTATTGGAGATAAgtgagagggaacttcatcaagtggaatcagcctgaccttactggagatta #### Mgea5_ID9588_11 --> 2 - 0 Original Alignment ggTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagggTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc Alignment from CESAR ggTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagggTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc Alignment from Spaln_aa2Genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc Alignment from Spaln_nt2Genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc Alignment from Pairagon GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc Alignment from Exonerate_protein2genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc Alignment from Exonerate_coding2genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc Alignment from GeneWise GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG aggaaatcacctttcctttaacattctcgtccctgtgttctgtcttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtatgcataagaaatcactcgctttattttacgagaactcgtaaactgcc #### Mgea5_ID9592_9 --> 2 - 0 Original Alignment gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcaggtAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtgagtgctcatcatctcatcagcagctttgattagtgctgaggattcca Alignment from CESAR gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcaggtAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtgagtgctcatcatctcatcagcagctttgattagtgctgaggattcca Alignment from Spaln_aa2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAATAG aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcagGTAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAGTGAgtgctcatcatctcatcagcagctttgattagtgctgaggattcca Alignment from Spaln_nt2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcagGTAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtgagtgctcatcatctcatcagcagctttgattagtgctgaggattcca Alignment from Pairagon GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcagGTAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtgagtgctcatcatctcatcagcagctttgattagtgctgaggattcca Alignment from Exonerate_protein2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcagGTAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtgagtgctcatcatctcatcagcagctttgattagtgctgaggattcca Alignment from Exonerate_coding2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcagGTAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtgagtgctcatcatctcatcagcagctttgattagtgctgaggattcca Alignment from GeneWise GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA aatcaaatatgtttgttgctgtcctctgttttacttctacttcacttcagGTAGGCAAGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACATTTTACCAGGGACCCATAATGAGCCAGGGAGCTGCTTTGAGTGGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACCGAGATTGTTGAGGCGAAGATGGCAGAAGAGTTGAGACCAATGGACACAGATAAGGAGAGTATGGCTGAGTCCAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAACGAAAAGCCTCTGTACACTGCTGAACCTGTGACTCTGGAGGACTTACAGTTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAGAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAgtgagtgctcatcatctcatcagcagctttgattagtgctgaggattcca #### Mgea5_ID9595_6 --> 2 - 1 Original Alignment aaTACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAg attataaatgagcattgcaattgatttaggctcttcacatttgacctcagaaTACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTggtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga Alignment from CESAR aaTACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAg attataaatgagcattgcaattgatttaggctcttcacatttgacctcagaaTACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTggtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga Alignment from Spaln_aa2Genome AATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAG attataaatgagcattgcaattgatttaggctcttcacatttgacctcagAATACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTGgtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga Alignment from Spaln_nt2Genome AATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAG attataaatgagcattgcaattgatttaggctcttcacatttgacctcagAATACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTGgtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga Alignment from Pairagon AATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAG attataaatgagcattgcaattgatttaggctcttcacatttgacctcagAATACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTGgtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga Alignment from Exonerate_protein2genome AATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAG attataaatgagcattgcaattgatttaggctcttcacatttgacctcagAATACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTGgtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga Alignment from Exonerate_coding2genome AATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAG attataaatgagcattgcaattgatttaggctcttcacatttgacctcagAATACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTGgtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga Alignment from GeneWise AATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAG attataaatgagcattgcaattgatttaggctcttcacatttgacctcagAATACTGTGGCACTTTCTGTTATCCAAATGTTTCTCAGTCTCCTTACTTGAGAATTGTGGGTGAGAAGCTTCTACCTGGGATTGAGGTGCTTTGGACTGgtgagtccttagaaatctgttgttaagctttcattaccaggggttacaga #### Minpp1_ID6697_3 --> 2 - 0 Original Alignment acTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagacTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa Alignment from CESAR acTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagacTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa Alignment from Spaln_aa2Genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagACTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa Alignment from Spaln_nt2Genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagACTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa Alignment from Pairagon ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagACTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa Alignment from Exonerate_protein2genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagACTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa Alignment from Exonerate_coding2genome ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagACTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa Alignment from GeneWise ACTTAATTCAGGTAGCTTTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCTCCCTGGTGTGATGTGTTTGACGTAGATGATGCAAGG taccaatatagtaacttgcacatttttatttttatattttcaatcaacagACTTAATTCAGGTGGCATTTTTCACCTGTTCATTTGACCTGGCAATTAAAGGTGTCCATTCACCCTGGTGTGATGTGTTTGATGTAGATGATGCAAGGgtatctgtttttatatttcttccttatagttttttgggctttagttggaa #### Mrpl11_ID769_4 --> 2 - 2 Original Alignment ggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAC---GTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGga tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagggAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTCT---------TCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGgagtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag Alignment from CESAR ggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGga tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagggAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTCT---------TCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGgagtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag Alignment from Spaln_aa2Genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagGGAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTCT---------TCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGGAgtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag Alignment from Spaln_nt2Genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGA---AGCACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagGGAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTCT---------TCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGGAgtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag Alignment from Pairagon GGAAAGAGGTGGCAGGCCTGGTGAGTTTGA---AGCACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagGGAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTC---------TTCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGGAgtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag Alignment from Exonerate_protein2genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagGGAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTCT---------TCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGGAgtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag Alignment from Exonerate_coding2genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagGGAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTCT---------TCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGGAgtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag Alignment from GeneWise GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA tctcgagaaatgtaatggcacttgaacaaactgcatgtgcttgcttctagGGAAAGAGGTGGCAGGCCTAGTGAGTTTGAAGCAGCATGTATATGAGATTGCATGTGTAAAAGCTAAGGAAGAAGCTTTCGCCATGCAAGATGTGCCTCTGTCTTCT---------TCTGTCATTGGTTCTGCCCGTTCCCTGGGCGTTCGGGTGGTGAAGGAgtattatacatcttgaaaggaaaagaactaagtttttcattgggtgggag #### Mrpl16_ID3290_3 --> 2 - 0 Original Alignment atGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagatGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta Alignment from CESAR atGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagatGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta Alignment from Spaln_aa2Genome ATGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagATGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta Alignment from Spaln_nt2Genome ATGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagATGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta Alignment from Pairagon ATGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagATGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta Alignment from Exonerate_protein2genome ATGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagATGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta Alignment from Exonerate_coding2genome ATGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagATGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta Alignment from GeneWise ATGTCTCCATCCCTGAAAGGTCCAAGCTTAAATTTGTTGAAAGAGTCCCACTTGTGCCAAAAGTAAGAAGAGAACCTAAAAATTTGAAGGACATACGAGGGCCTTCAACTGAAGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTG ctctatattgtgcactgtcacttattctttgtttcctatgtgacctgcagATGTCTCCACCCCCGAAAGGGCCAAACTCAAATTTGTTGAAAGAGTCCCTCTTGTGCCTAAGTTAAGGAGAGAACCTAAAAATTTGAAGGACATACGGGGGCCTTCAACTGAGGCCACTGACTTTACAGAAGGCAATTTTGCAATTTTAgtgagtgatgaaagagagtaacaaggtctttctctttggcgctgattcta #### Mrpl21_ID23_5 --> 0 - 2 Original Alignment GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCcg tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCcggtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag Alignment from CESAR GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCcg tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCcggtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag Alignment from Spaln_aa2Genome GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCCGgtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag Alignment from Spaln_nt2Genome GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCCGgtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag Alignment from Pairagon GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCCGgtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag Alignment from Exonerate_protein2genome GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCCGgtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag Alignment from Exonerate_coding2genome GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCCGgtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag Alignment from GeneWise GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG tatggtatattgtatcttcttgggtcttagccttttccctgtccccacagGTCTTGCTTGTTGGGGCAGATAATTTCACACTCCTGGGCAAGCCACTACTCCGgtgagtgacctcaaaccatgggcttggtttggggctggacaggctcacag #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc catgggctatgaggctgggtctctctacacaacaacttcatctcttataggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc catgggctatgaggctgggtctctctacacaacaacttcatctcttataggGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACcgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC catgggctatgaggctgggtctctctacacaacaacttcatctcttatagGGAGTTGGTGGAACGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCACGGCCATGCACCATGCCACGAATGGTGGCAGAATACCgtactgggagctgagtgagggcaggggtgtgcagggcatgatctgcttca #### Ms4a13_ID3143_4 --> 0 - 0 Original Alignment ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata Alignment from CESAR ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata Alignment from Spaln_aa2Genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata Alignment from Spaln_nt2Genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata Alignment from Pairagon ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata Alignment from Exonerate_protein2genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata Alignment from Exonerate_coding2genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata Alignment from GeneWise ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA gcaagcattacttctgattgctgttcacgtcattttctcttctattttagATCCTCTGTACTATGTCCCTGAACATACTCTGCATAATTGTTACAATCATCGGAGCCAGCCTAACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGGAgtaagcaacttgtctagacagatcttcctttactagcatttctaatgata #### Ms4a15_ID3093_4 --> 0 - 0 Original Alignment TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag Alignment from CESAR TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag Alignment from Spaln_aa2Genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag Alignment from Spaln_nt2Genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag Alignment from Pairagon TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag Alignment from Exonerate_protein2genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag Alignment from Exonerate_coding2genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag Alignment from GeneWise TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagtttcactaataagactaattcttcccatatatttttttcagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAACCACACCAGTTGCCTGgtgagattactacaccagctgtctggcaaaagtttgaatggcacagagag #### Ms4a15_ID3094_3 --> 0 - 0 Original Alignment ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt Alignment from CESAR ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt Alignment from Spaln_aa2Genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt Alignment from Spaln_nt2Genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt Alignment from Pairagon ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt Alignment from Exonerate_protein2genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt Alignment from Exonerate_coding2genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt Alignment from GeneWise ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtggggctcatagtcccaggtggcacccagattcttctgtcttccagACAGTGCAGATCCTAATTGGGCTCATCCATCTTGGCTTTGGTAGCGTCCTGCTCATGGTTTGGCCAGGCCATCTGGGGATGCTTTTTATTGAAGGTGGTGTTCCCTTTTGGGGAGGAGCTTGTgtcggtgttttttgtgatgtggctagagatccctggttaaggagcggctt #### Ms4a18_ID3102_3 --> 0 - 0 Original Alignment TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca Alignment from CESAR TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca Alignment from Spaln_aa2Genome TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca Alignment from Spaln_nt2Genome TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca Alignment from Pairagon TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca Alignment from Exonerate_protein2genome TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca Alignment from Exonerate_coding2genome TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca Alignment from GeneWise TTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAATTCCAACAGTTGTGTG atttttaaaactttatgaaatgttctccactgtcccctctctatctacagTTTATCATCTCTGGATCTTTGTCAGTGTTGGCTGAAAAGAATTCCAACAGTTGTGTGgtaagatgttaagccatatctctaacaagttctagagaagtaaatgacca #### Ms4a1_ID3152_4 --> 0 - 0 Original Alignment GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGGAATA---ATTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc Alignment from CESAR GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGGAATAATT---TCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc Alignment from Spaln_aa2Genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGGAATAATT---TCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc Alignment from Spaln_nt2Genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGG---AATAATTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc Alignment from Pairagon GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGGAATAA---TTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc Alignment from Exonerate_protein2genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGGAATAATT---TCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc Alignment from Exonerate_coding2genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGGAATAATT---TCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc Alignment from GeneWise GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG atatccagcttcatgttttacgggattgtacaatatttctcattttatagGTCAAAGCAAAAGTCATAATGAGCTCCCTAAGCCTCTTTGCTGCCATTTCTGGAATAATT---TCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTGAAGATGAGAAGACTGGAGCTCGTT---ACTTCCAAGCCATATGTTGACATCTATGACTGTGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAACAGCATTCAATCTGTGTTCTTGgtgggcatcatagcagtagtcagtcttcagagagaaatggttctgtgctc #### Ms4a1_ID3153_3 --> 0 - 0 Original Alignment TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt Alignment from CESAR TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt Alignment from Spaln_aa2Genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt Alignment from Spaln_nt2Genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt Alignment from Pairagon TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt Alignment from Exonerate_protein2genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt Alignment from Exonerate_coding2genome TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt Alignment from GeneWise TACATTATTTCAGGATCACTCCTGGCAGCTGCAGCAGAAAAAACCTCCAGGAAGAGTTTG ttgcttccatcttgcacttcttgcccctaaatttttttcttcctaaatagTACCTTATTTCAGGACCACTCCTGGCAGCTGCAGAAGAAAAAACCTCTAGGAAAAGTTTGgtaaaaaatcatatctcctttctcacacacaagacatactgccactttgt #### Ms4a2_ID3239_6 --> 0 - 0 Original Alignment GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGGTA---ATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact Alignment from CESAR GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGGTA---ATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact Alignment from Spaln_aa2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGGTA---ATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact Alignment from Spaln_nt2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGG---TAATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact Alignment from Pairagon GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGG---TAATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact Alignment from Exonerate_protein2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGGTA---ATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact Alignment from Exonerate_coding2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGGTA---ATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact Alignment from GeneWise GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG ataggcatatgctgtgaggttcacttttattttgtgctcttgtctcccagGAACTGGTA---ATGATGCTGTTTCTTACCATCCTAGCGTTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAGAAGgtagagggaatatagattatcatacaagagagaatttgtgttttgctact #### Ms4a2_ID3241_4 --> 0 - 0 Original Alignment TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt Alignment from CESAR TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt Alignment from Spaln_aa2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt Alignment from Spaln_nt2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt Alignment from Pairagon TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt Alignment from Exonerate_protein2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt Alignment from Exonerate_coding2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt Alignment from GeneWise TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacaccagttcccccttttccacagTTTGTTTTGGCTGGATTTTTATCAATTATCTCTAAGAGAAAGAACACATTGTATTTGgtaaggtgccgactgctttgttcatgcctcaaaattgagaaagtaaagtt #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagtGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagtGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacaggggattagaagactctaagaagtgacaccgtcgtgcttcctcagTGCACCTGACATTGAACTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAATTGGAGTTCCTGGGAgtaatagcctggcttttattcccagaccaaaacgctgcctcctgctaatt #### Ms4a3_ID3248_5 --> 0 - 0 Original Alignment GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa Alignment from CESAR GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa Alignment from Spaln_aa2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa Alignment from Spaln_nt2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa Alignment from Pairagon GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa Alignment from Exonerate_protein2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa Alignment from Exonerate_coding2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa Alignment from GeneWise GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgacttctctcttgctggcccatttgcctactacagGGCCTGGTATCTTTAATGCTGATTCTCAGCCTGCTAGAGCTGTCTGTGACCATTTCTATCTCTTCTATGTGGTGCTTAGGGAATGTTTGTGGTTTAAGAGAGgttagcacagcagaaatgtagggcaagttcagtcatcttagaacacacaa #### Ms4a4b_ID3188_2 --> 0 - 0 Original Alignment GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt Alignment from CESAR GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt Alignment from Spaln_aa2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt Alignment from Spaln_nt2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt Alignment from Pairagon GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt Alignment from Exonerate_protein2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt Alignment from Exonerate_coding2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt Alignment from GeneWise GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtagacgagtgaaagtacatactaaaagctgagtgtttttgctcctagGTTTTACAAGTGATGATTGCTATCATTAACCTCAGCTTAGGAATAATAATTTTGACAACTCTATGCTCTGAACTACCAACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCTATAATGgtgagtaatatacagtcatttatgactggaaatattgactatcctaactt #### Ms4a4b_ID3191_5 --> 0 - 0 Original Alignment GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt Alignment from CESAR GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt Alignment from Spaln_aa2Genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt Alignment from Spaln_nt2Genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt Alignment from Pairagon GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt Alignment from Exonerate_protein2genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt Alignment from Exonerate_coding2genome GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt Alignment from GeneWise GGTTTGGATGTTTTGATGTTAATTTTCAATATGCTAGAATTCTGCCTTGCTGTGTCCGTCTCTGCATTTGGATGTGAAGCTTCCTGTTGTAACTCCCGTGAG tcttaatgtaccttgtgatgaattggcaataatattgatttccttaatagGGGTTGGATGTTTTGATGTTAATTTTCAATATGCTCAAATTCTGCCTTGCTGTGTCTGTCTCTGCATTTGGATGTGAGGCTTCCTGTTGCAATTCCCGTGAGgtgaggagcagttcctgttccctggtgttggttagaagatctctattgtt #### Ms4a4c_ID3181_4 --> 0 - 0 Original Alignment ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca Alignment from CESAR ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca Alignment from Spaln_aa2Genome ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca Alignment from Spaln_nt2Genome ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca Alignment from Pairagon ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca Alignment from Exonerate_protein2genome ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca Alignment from Exonerate_coding2genome ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGT-TCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGT-GGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca Alignment from GeneWise ATCATCAGCAGTCTAACTCTGAACACTATCACCTCTGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCGTTTCGGTATAATTATACAATCACCAAG tggagatatatgaaggtcgccattgataatatgttttcttctctgtctagATCAACAGCAGTCTAACTTTGAACACTATCACCTCGGTGTTGGCTGCAACTGCAAGCATAATGGGTGTAGTCAGTGTGGCTGTGGGTTCACAGTTTCCATTTCGGTATAATTATACAATCACCAAGgtaagtactcactctgctggttgggtaccatggagttggactcatactca #### Ms4a4d_ID3223_3 --> 0 - 0 Original Alignment TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact Alignment from CESAR TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact Alignment from Spaln_aa2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact Alignment from Spaln_nt2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact Alignment from Pairagon TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact Alignment from Exonerate_protein2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact Alignment from Exonerate_coding2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact Alignment from GeneWise TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG ataccaacaatttaaaactgtttaatcttttctttttttccttttcacagTTCATTTTTTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCACAgtaaggatcagaattaatattggtattgaaagggggtaatatcatgtact #### Ms4a4d_ID3224_4 --> 0 - 0 Original Alignment ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg Alignment from CESAR ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg Alignment from Spaln_aa2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg Alignment from Spaln_nt2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg Alignment from Pairagon ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg Alignment from Exonerate_protein2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg Alignment from Exonerate_coding2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg Alignment from GeneWise ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT tagagttacacaaaacccattattgatagtttcctgtcaccgacctgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCATCATCAGTGTAATTTCTGGTGTTTTCCACCAGTTTAGGAGTCAACCAGCCATCACTgtaggaatttacttactgtgactgtggcatgccatgtagaaggcaagagg #### Ms4a6b_ID3214_3 --> 0 - 0 Original Alignment TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc Alignment from CESAR TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc Alignment from Spaln_aa2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc Alignment from Spaln_nt2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc Alignment from Pairagon TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc Alignment from Exonerate_protein2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc Alignment from Exonerate_coding2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc Alignment from GeneWise TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgccaatgaactgccaatgttttactttttcttcccatttaagTTTATAGTCTCTGGGATTCTGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtaaaaaaagggtcctgaccctgaactaatgagcacaaagacacaggacc #### Ms4a6c_ID3198_3 --> 0 - 0 Original Alignment TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag Alignment from CESAR TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag Alignment from Spaln_aa2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag Alignment from Spaln_nt2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag Alignment from Pairagon TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag Alignment from Exonerate_protein2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag Alignment from Exonerate_coding2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag Alignment from GeneWise TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG acttcatgaatgaaaagtgacctgataagtttttttttgccttaaaatagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAGAGAAAGTCAACAAAACCTCTGgtaaaagcagaactggtgcttctgggaccagaggattcttcaggctcaag #### Ms4a6d_ID3230_5 --> 0 - 0 Original Alignment GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt Alignment from CESAR GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt Alignment from Spaln_aa2Genome GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt Alignment from Spaln_nt2Genome GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt Alignment from Pairagon GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt Alignment from Exonerate_protein2genome GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt Alignment from Exonerate_coding2genome GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt Alignment from GeneWise GGAGTCTTTTCACTGATGCTAATCAGCAGTGTGTTGGAGCTTGGCCTGGCTGTCCTCACTGCCACACTGTGGTGGAAACAGAGCTCCTCTGCTTTCTCTGGG gtgtctaatggtgacattccttacatggtgtgttattgtttcctcactagGGAGTCCTTTCTCTTATGCTAATCAGCAGTGTATTGGAGCTTGGCCTGGCTGTCCTGACTGCCACACTGTGGTGGAAACAGAGCTCATCTGCTTTCTCTGGGgtttgtgaagggctgcttgattcttccctagtgttcctcttggctgtatt #### Ms4a6d_ID3231_4 --> 0 - 0 Original Alignment GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca Alignment from CESAR GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca Alignment from Spaln_aa2Genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca Alignment from Spaln_nt2Genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca Alignment from Pairagon GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca Alignment from Exonerate_protein2genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca Alignment from Exonerate_coding2genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca Alignment from GeneWise GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT acttaaagtgaagtgaataatagcatatcttttggttttctctgatgcagGTTCACAGTAGCCTAGCACTGAGCATCCTGAGTGTCCTTCCTGCTCTTTCAGGCATTGCTATTCTCTCCATTAGTCTGGCTGCCTTAGAACCTGCACTACAGCAATGTAAGCTTGCTTTCACACAACTTGACACAACTCAAGATGCATATCATTTTTTTAGCCCCGAGCCGTTAAACAGCTGTTTTGTGGCCAAAGCATCTCTGACTgtgagtattgcaaacacagatgttccaaggttgggatatatttttataca #### Ms4a6d_ID3233_2 --> 0 - 0 Original Alignment GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg Alignment from CESAR GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg Alignment from Spaln_aa2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg Alignment from Spaln_nt2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg Alignment from Pairagon GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg Alignment from Exonerate_protein2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg Alignment from Exonerate_coding2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg Alignment from GeneWise GCAATCCAGATCATGTGTGCTGTGATGGTGTTGGCTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCCATCCTGTTAGAATCTGGCTACCCATTTGTAGGAGCTTTGTTT ctactttttgttattgctgatttatgcaaaccacctctctccatccttagGCAATCCAGGTCATGTGTGCTGTGATGGTACTGGCTCTGGGAATTGTTTTGGCATCTGTCCCGTCCAACCTCCACTTTACCTCAGTGTTTTCCCTCCTGTTAGGATCAGGCTACCCTTTTGTAGGAGCTTTATTTgtgagtagtaggacttccgtgggggataaggtggtggtgcaacagagggg #### Ms4a8a_ID3116_4 --> 0 - 0 Original Alignment TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt Alignment from CESAR TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt Alignment from Spaln_aa2Genome TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt Alignment from Spaln_nt2Genome TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt Alignment from Pairagon TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt Alignment from Exonerate_protein2genome TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt Alignment from Exonerate_coding2genome TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt Alignment from GeneWise TTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG ggctttagactccctagcttgtctatctacactctgattctgttcctcagTTTATCATTTCAGGCTCTCTCTCAGTAGCAGCAGAGACTCAGCCCAATCCACCTTGCCTGgtgggttatattgagaggctctctgtcccagatggggactgatatcgtgt #### Ms4a8a_ID3118_2 --> 1 - 0 Original Alignment cATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagcATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag Alignment from CESAR cATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagcATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag Alignment from Spaln_aa2Genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagCATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag Alignment from Spaln_nt2Genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagCATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag Alignment from Pairagon CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagCATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag Alignment from Exonerate_protein2genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagCATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag Alignment from Exonerate_coding2genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagCATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag Alignment from GeneWise CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG gaaagggtatatggatagtgagtgattctctcttcccttttgttttccagCATGAATACAGTAACTTCTCCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTGGTACCAGGGACTGTGCCTCAGATGCCTATTTATCCCCGTAATCAGCGTCAAATCCATGTGATTTCTGGTCATCTCCCTGGTTTGGTGCCAGCTATGACTGAACCACCTGCACAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGGgtgaggaagagaagcctactgaaggacccaagaacatatgctacagagag #### Mta2_ID2528_3 --> 0 - 1 Original Alignment ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTc agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTcgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc Alignment from CESAR ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTc agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTcgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc Alignment from Spaln_aa2Genome ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTC agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTCgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc Alignment from Spaln_nt2Genome ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTC agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTCgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc Alignment from Pairagon ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTC agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTCgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc Alignment from Exonerate_protein2genome ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTC agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTCgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc Alignment from Exonerate_coding2genome ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTC agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTCgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc Alignment from GeneWise ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTC agggtctctctgtgtagccttgtccttcatcatgctaattttttttatagACTGCAAATGGAAATGTGGAAGCTAAGGTAGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTCgtgtgtatccatcagccccctctccaggctctgaggactggacatgttcc #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg agccaggcacccaggggatcctctctcacaccaactgcttctccccacaggcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtaagcaggatggcttttcaggctaggttggatcttctatctcaccggct Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg agccaggcacccaggggatcctctctcacaccaactgcttctccccacaggcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtaagcaggatggcttttcaggctaggttggatcttctatctcaaagtag Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG agccaggcacccaggggatcctctctcacaccaactgcttctccccacagGCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagcaggatggcttttcaggctaggttggatcttctatctcaccggct Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG agccaggcacccaggggatcctctctcacaccaactgcttctccccacagGCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagcaggatggcttttcaggctaggttggatcttctatctcaccggct Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG agccaggcacccaggggatcctctctcacaccaactgcttctccccacagGCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagcaggatggcttttcaggctaggttggatcttctatctcaccggct Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG agccaggcacccaggggatcctctctcacaccaactgcttctccccacagGCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagcaggatggcttttcaggctaggttggatcttctatctcaccggct Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG agccaggcacccaggggatcctctctcacaccaactgcttctccccacagGCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagcaggatggcttttcaggctaggttggatcttctatctcaccggct Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG agccaggcacccaggggatcctctctcacaccaactgcttctccccacagGCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagcaggatggcttttcaggctaggttggatcttctatctcaccggct #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from GeneWise ----------------------------------------------CTGGTGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT TTTCAGGCTAGGTTGGATCTTCTATCTCAAAGTAGATATTCTTTTTTTAGTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt #### Mtl5_ID53_5 --> 0 - 2 Original Alignment GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTgg agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTgggtattcattacaggcagagccaactgcctgtcactgggatctaacttgct Alignment from CESAR GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTgg agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTgggtattcattacaggcagagccaactgcctgtcactgggatctaacttgct Alignment from Spaln_aa2Genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTGGgtattcattacaggcagagccaactgcctgtcactgggatctaacttgct Alignment from Spaln_nt2Genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTGGgtattcattacaggcagagccaactgcctgtcactgggatctaacttgct Alignment from Pairagon GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTGGgtattcattacaggcagagccaactgcctgtcactgggatctaacttgct Alignment from Exonerate_protein2genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTGGgtattcattacaggcagagccaactgcctgtcactgggatctaacttgct Alignment from Exonerate_coding2genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTGGgtattcattacaggcagagccaactgcctgtcactgggatctaacttgct Alignment from GeneWise GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agtcgcattagacagagctcttaagggtgtgtgctctccttcccctttagGTCGATAATGGAGCTCTCCCATCAGCTGTCAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACTCTGTCTGGgtattcattacaggcagagccaactgcctgtcactgggatctaacttgct #### Myof_ID7448_50 --> 2 - 0 Original Alignment gtTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttataggtTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct Alignment from CESAR gtTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttataggtTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct Alignment from Spaln_aa2Genome GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttatagGTTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct Alignment from Spaln_nt2Genome GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttatagGTTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct Alignment from Pairagon GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttatagGTTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct Alignment from Exonerate_protein2genome GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttatagGTTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct Alignment from Exonerate_coding2genome GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttatagGTTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct Alignment from GeneWise GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT gcctgtgtgtcccatgttttgttcttggaaaacttgtgtttctcttatagGTTTCCTTGAACTTGACTTACAACGCATGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCCCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGATCCATGGAAGGATGGTGGCCATGCTATGCAGACAAAGATGGCACCCGGGTGATGGCTgtgagtggattcagggaaatcttctctgttattaatggatggatcaacct #### Myof_ID7462_38 --> 0 - 0 Original Alignment CTGTCGGAAAAG ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagCTGTCAGGAAAGgtagtaattgcatacaggttacatcatttttctacccattgcaggccaca Alignment from CESAR CTGTCGGAAAAG ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagCTGTCAGGAAAGgtagtaattgcatacaggttacatcatttttctacccattgcaggccaca Alignment from Spaln_aa2Genome CTGTCGGAAAAG ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagCTGTCAGGAAAGgtagtaattgcatacaggttacatcatttttctacccattgcaggccaca Alignment from Spaln_nt2Genome CTGTCGGAAAAG ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagCTGTCAGGAAAGgtagtaattgcatacaggttacatcatttttctacccattgcaggccaca Alignment from Pairagon CTGTCGGAAAAG ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagCTGTCAGGAAAGgtagtaattgcatacaggttacatcatttttctacccattgcaggccaca Alignment from Exonerate_protein2genome ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagctgtcaggaaaggtagtaattgcatacaggttacatcatttttctacccattgcaggccaca Alignment from Exonerate_coding2genome ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagctgtcaggaaaggtagtaattgcatacaggttacatcatttttctacccattgcaggccaca Alignment from GeneWise ggctcctgtactgtatatagtgtccactttaatgcctaatcacttttcagctgtcaggaaaggtagtaattgcatacaggttacatcatttttctacccattgcaggccaca #### Myof_ID7465_37 --> 2 - 0 Original Alignment ccTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagccTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCTAAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac Alignment from CESAR ccTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagccTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCTAAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac Alignment from Spaln_aa2Genome CCTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagCCTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCTAAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac Alignment from Spaln_nt2Genome CCTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagCCTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCTAAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac Alignment from Pairagon CCTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagCCTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCTAAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac Alignment from Exonerate_protein2genome CCTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagCCTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCTAAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac Alignment from Exonerate_coding2genome CCTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagCCTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCTAAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac Alignment from GeneWise CCTCTCTGATGTCTGCACCTCCATGCCGGGAAGTCGTTATTGAAATAGAAGACACCAAACCATTACTGGCTTCTAAGCTGTCGGAAAAG actacccagaggctctgaagtcctagatgctactgtgtttatattcacagCCTCTCTGATGTCTGTACCTCCATGCCGGGAGGTTGTAATCGAAATAGAAGGCATTAAGCCATTACTGGCTTCT------------AAAgtgagctgtattccagatgctcaagcaattggtaaagtccaaaggtttac #### Myof_ID7466_36 --> 0 - 1 Original Alignment TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAg ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAggtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt Alignment from CESAR TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAg ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAggtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt Alignment from Spaln_aa2Genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt Alignment from Spaln_nt2Genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt Alignment from Pairagon TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt Alignment from Exonerate_protein2genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt Alignment from Exonerate_coding2genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt Alignment from GeneWise TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG ttagatctgggaacaaaagaggcacagaacagtggttactttctttgcagCTATTGCCTAAGCACGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCACAGGCAGTTTGGACAGAAGCCAGTGGTTGGCCAATGCACCATTGACCACCTAGACCATTTTCAGTGTGATCCATATGCAGGAAAGGATGATATTGTACCGCAACTGAAAGgtaagtcttcaaggcacatctgtattttacagtattatacttcttatttt #### Myof_ID7472_30 --> 0 - 1 Original Alignment GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACa cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATagtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta Alignment from CESAR GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACa cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATagtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta Alignment from Spaln_aa2Genome GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATAgtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta Alignment from Spaln_nt2Genome GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATAgtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta Alignment from Pairagon GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATAgtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta Alignment from Exonerate_protein2genome GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATAgtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta Alignment from Exonerate_coding2genome GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATAgtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta Alignment from GeneWise GGGGCAGACACCACAGAGGATGGAGAAGAGAAGGGCCCGGAGAAGCAGAAGCACAGCGCCACCACTGTGTTTGGAGCAAACACGCCCATTGTTTCCTGTAATTTCGACA cttgactcttggatgatgccagccacaatcttgcttcgtttgttttctagGGGGCAGACACCACAGAAGATGGAGAAGAAAAGGGCCCAGAAACGCAGAAGCACAGTGCCACCACTCTGTTTGGGGCAAACACACCTATTGTTTCCTGTAATTATGATAgtgagtttaaagtatgactgtaatctatgcatctgtccattctatctcta #### Myof_ID7473_29 --> 0 - 0 Original Alignment GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat Alignment from CESAR GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat Alignment from Spaln_aa2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat Alignment from Spaln_nt2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat Alignment from Pairagon GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat Alignment from Exonerate_protein2genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat Alignment from Exonerate_coding2genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat Alignment from GeneWise GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT caagggatttatgtgtctaattcatcatcattgtttataaaatcacatagGCCATGGAAGAGCTTGAAGACCGGGAGGGCTGGGAATATGCTTCACTAATTGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTCCGCCGAAGGCGCTGGAGGAGGAAAATGGCCCCCTCTGAGACGCATGGTGCCACCGCCATTTTTAGACTCGAAGGCGCCCTTgtaacaagacacaaaaatatgttactggtaatgctgtaaagggtgtgcat #### Myof_ID7475_27 --> 0 - 1 Original Alignment AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAggtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc Alignment from CESAR AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAggtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc Alignment from Spaln_aa2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc Alignment from Spaln_nt2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc Alignment from Pairagon AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc Alignment from Exonerate_protein2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc Alignment from Exonerate_coding2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc Alignment from GeneWise AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtgttcttaattccatctgttatgttgtcctgtttccatggttttcagAATGGAGATAAGGCGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtaaggctgagtgtgagtctgcagataggtctcacgcagagcaacggttc #### Myof_ID7485_17 --> 2 - 0 Original Alignment caACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagcaACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga Alignment from CESAR caACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagcaACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga Alignment from Spaln_aa2Genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagCAACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga Alignment from Spaln_nt2Genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagCAACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga Alignment from Pairagon CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagCAACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga Alignment from Exonerate_protein2genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagCAACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga Alignment from Exonerate_coding2genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagCAACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga Alignment from GeneWise CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG tactggcttgtccagtaagatctggaatagtgctctactttttattccagCAACTACAGGGGAGACCGCAGTGGGATTTGTCCCAACACTTGGACCCTGTTATTTGAACCTTTATGGAAGTCCCAGAGAATATACAGGTTTTGCAGACCCCTATGATGAGCTCAACTCGGGAAAAgtaagactatcagtttgggctgtgattggtcacttcctaccctcagggga #### Myof_ID7489_13 --> 2 - 0 Original Alignment tgGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagtgGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt Alignment from CESAR tgGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagtgGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt Alignment from Spaln_aa2Genome TGGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagTGGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt Alignment from Spaln_nt2Genome TGGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagTGGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt Alignment from Pairagon TGGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagTGGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt Alignment from Exonerate_protein2genome TGGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagTGGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt Alignment from Exonerate_coding2genome TGGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagTGGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt Alignment from GeneWise TGGATGATGCCTTCTCACAAACAGTGAAGGAAATATTTGGTGGCAACGCAGATAAAAAAAATCTTGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAG gtttttagggagtggctttcaaagctccatgacctctctgctctcctcagTGGATGATGCCTACTCACAAACAGTAAAGGAAATATTTGGTGGCAACGCGGATAAAAAAAATCTGGTGGATCCTTTTGTAGAAGTCTCCTTTGCTGGGAAAAAGgtcactatgtagagtaaatgtgtgtgcctcttagaacagatgtttaaagt #### Myrf_ID2716_21 --> 2 - 1 Original Alignment gcCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAg agtttgggactggaggcagtaagcttcttcttttttctttcccttttcaggcCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAggtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg Alignment from CESAR gcCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAg agtttgggactggaggcagtaagcttcttcttttttctttcccttttcaggcCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAggtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg Alignment from Spaln_aa2Genome GCCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAG agtttgggactggaggcagtaagcttcttcttttttctttcccttttcagGCCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAGgtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg Alignment from Spaln_nt2Genome GCCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAG agtttgggactggaggcagtaagcttcttcttttttctttcccttttcagGCCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAGgtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg Alignment from Pairagon GCCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAG agtttgggactggaggcagtaagcttcttcttttttctttcccttttcagGCCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAGgtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg Alignment from Exonerate_protein2genome GCCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAG agtttgggactggaggcagtaagcttcttcttttttctttcccttttcagGCCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAGgtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg Alignment from Exonerate_coding2genome GCCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAG agtttgggactggaggcagtaagcttcttcttttttctttcccttttcagGCCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAGgtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg Alignment from GeneWise GCCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAATGGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAGGGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAG agtttgggactggaggcagtaagcttcttcttttttctttcccttttcagGCCCTGGCCAGATGGCCCCACTGCCAGTTACCAACATCAGATCCAAATCCTGGGGCATCTCAGCTAATGGCATTAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTTGTTCCCTTTCCTGGAGGGCAGACCAAGACCAAGAACAGCCCAAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCACAACCCAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGTTAGgtaggagactttcacttatctaggtccaggcaagattgtcactatcagtg #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcaggttccttttcatgtctgtttagGTGGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtaagcatgccctgtgccttggaggggtccctagttatccccgaatccat #### Myrf_ID2733_5 --> 2 - 2 Original Alignment acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagatCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTcagtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg Alignment from CESAR acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagatCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTcagtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg Alignment from Spaln_aa2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagATCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTCAgtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg Alignment from Spaln_nt2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagATCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTCAgtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg Alignment from Pairagon ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagATCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTCAgtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg Alignment from Exonerate_protein2genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagATCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTCAgtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg Alignment from Exonerate_coding2genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagATCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTCAgtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg Alignment from GeneWise ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tgcccagtgggataatggaagtcactcccccacctgcatcttccccacagATCCCCATCTTCTCCGCACCATAACTTCGGAAACTCTATGCCATGTGGGAATTTCTTCCCGCCTGGAGCACCCACCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCACCTCCCCCGCCTCATTACCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTCCATCACACCCGGCAAACTCAGGTGCTACACCAGTTGCTGCAGCAGCATGGGGCTCAgtgagttatggatagaacctccttggaagtaaggccccttggaagtaagg #### Myrf_ID2737_3 --> 1 - 2 Original Alignment cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAgg gtatccccttaggctggagaactggggatttctcttcttttaacatacagcTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTgggtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca Alignment from CESAR cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAgg gtatccccttaggctggagaactggggatttctcttcttttaacatacagcTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTgggtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca Alignment from Spaln_aa2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAGG gtatccccttaggctggagaactggggatttctcttcttttaacatacagCTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTGGgtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca Alignment from Spaln_nt2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAGG gtatccccttaggctggagaactggggatttctcttcttttaacatacagCTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTGGgtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca Alignment from Pairagon CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAGG gtatccccttaggctggagaactggggatttctcttcttttaacatacagCTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTGGgtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca Alignment from Exonerate_protein2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAGG gtatccccttaggctggagaactggggatttctcttcttttaacatacagCTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTGGgtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca Alignment from Exonerate_coding2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAGG gtatccccttaggctggagaactggggatttctcttcttttaacatacagCTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTGGgtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca Alignment from GeneWise CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAGG gtatccccttaggctggagaactggggatttctcttcttttaacatacagCTGCTTTCCTGAGCTTTCTTCACCAGCAAGCACTGCCTCCTTCCCCCATGGGCCACTGGCCATCCCTGGCTCCAGTGGGCTTCACCATCTGAGCCCACCTGGGAGTGGACCATCCCCTGGGCGCCATGGCCCTCTCCCACCCCCAACATATGGGACCCCACTCAACTGCAACAACAACACCAGCATGGGCACCACCCCAAAGCCCTTCCTGGGGGGCTCTGGTCCTTCTATCAAAGCAGAGCCAAAGGCACCCTATGCACCTGGgtaagtgcaggcaggatgtggataggcacagggttcaggggcagaatgca #### Naa40_ID2076_4 --> 1 - 2 Original Alignment gTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGat gagtgttcctatgggagccccaggtctggagattttttttttaaattcaggTTG------TCCATTGAATGT---AGAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAatgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact Alignment from CESAR gTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGat gagtgttcctatgggagccccaggtctggagattttttttttaaattcaggTTG------TCCATTGAATGT---AGAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAatgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact Alignment from Spaln_aa2Genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gagtgttcctatgggagccccaggtctggagattttttttttaaattcagGTTG------TCCATTGAATGT---AGAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAATgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact Alignment from Spaln_nt2Genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gagtgttcctatgggagccccaggtctggagattttttttttaaattcagGTTG------TCCATTGAATGTA---GAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAATgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact Alignment from Pairagon GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gagtgttcctatgggagccccaggtctggagattttttttttaaattcagGTTG------TCCATTGAATGTA---GAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAATgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact Alignment from Exonerate_protein2genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gagtgttcctatgggagccccaggtctggagattttttttttaaATTCAGGTTGTCCATTGAATGT---AGAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAATgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact Alignment from Exonerate_coding2genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gagtgttcctatgggagccccaggtctggagattttttttttaaATTCAGGTTGTCCATTGAATGT---AGAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAATgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact Alignment from GeneWise GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gagtgttcctatgggagccccaggtctggagattttttttttaaattcagGTTG------TCCATTGAATGT---AGAGTGTCCGGACTGGAGTCAGCCACCGTGGACTGGGCCTTTGATCTGACCAAAACCAATATGCAGACAATgtacaggtggtcctaccaatatgcaacctggtactagagggcagtctact #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaaggtgagtttgaggcctc Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaagggaattgttcttttct Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtgagtttgaggcctc Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtgagtttgaggcctc Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtgagtttgaggcctc Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtgagtttgaggcctc Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtgagtttgaggcctc Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggtgagtttgaggcctc #### Naaladl1_ID1449_8 --> 2 - 1 Original Alignment atCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGg catcctctgctggatgctctctgtctctattggcttttgtttttctacaggtCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGggtaagtccaccctctccccctcctttggttactcccccagaggccctaga Alignment from CESAR atCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGg catcctctgctggatgctctctgtctctattggcttttgtttttctacaggtCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGggtaagtccaccctctccccctcctttggttactcccccagaggccctaga Alignment from Spaln_aa2Genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcctctgctggatgctctctgtctctattggcttttgtttttctacagGTCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGGgtaagtccaccctctccccctcctttggttactcccccagaggccctaga Alignment from Spaln_nt2Genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcctctgctggatgctctctgtctctattggcttttgtttttctacagGTCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGGgtaagtccaccctctccccctcctttggttactcccccagaggccctaga Alignment from Pairagon ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcctctgctggatgctctctgtctctattggcttttgtttttctacagGTCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGGgtaagtccaccctctccccctcctttggttactcccccagaggccctaga Alignment from Exonerate_protein2genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcctctgctggatgctctctgtctctattggcttttgtttttctacagGTCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGGgtaagtccaccctctccccctcctttggttactcccccagaggccctaga Alignment from Exonerate_coding2genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcctctgctggatgctctctgtctctattggcttttgtttttctacagGTCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGGgtaagtccaccctctccccctcctttggttactcccccagaggccctaga Alignment from GeneWise ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcctctgctggatgctctctgtctctattggcttttgtttttctacagGTCGATACGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACCGCCATCCTGTTGGAGATCTCTCAAGTGTTGGGCACCTTGCTAAAAAAGGgtaagtccaccctctccccctcctttggttactcccccagaggccctaga #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagccAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggggacgggttagctgtcaacagtgtctccatcctcttcctccagCCAATACTACTCTCCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTCTCTTCAACCAAAGATgtaagaaggtgatgttcaaaggagtaaggggggactatgctgtctaggtt #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggccacccatgattctttg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggcctttattatgtgacac Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccacccatgattctttg Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccacccatgattctttg Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccacccatgattctttg Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccacccatgattctttg Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccacccatgattctttg Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG--------------------------------------------------- gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGGTGAGCCAAGGAACTCTGCATCCACAGGCAGGGCCACCCATGATTCTTTG #### Ndufb8_ID9059_2 --> 2 - 2 Original Alignment ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg cactgggtggggacctaaaaacctagtcataaaataactttgatttccagccTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGgggtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg Alignment from CESAR ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg cactgggtggggacctaaaaacctagtcataaaataactttgatttccagccTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGgggtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg Alignment from Spaln_aa2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cactgggtggggacctaaaaacctagtcataaaataactttgatttccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGGGgtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg Alignment from Spaln_nt2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cactgggtggggacctaaaaacctagtcataaaataactttgatttccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGGGgtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg Alignment from Pairagon CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cactgggtggggacctaaaaacctagtcataaaataactttgatttccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGGGgtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg Alignment from Exonerate_protein2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cactgggtggggacctaaaaacctagtcataaaataactttgatttccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGGGgtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg Alignment from Exonerate_coding2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cactgggtggggacctaaaaacctagtcataaaataactttgatttccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGGGgtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg Alignment from GeneWise CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cactgggtggggacctaaaaacctagtcataaaataactttgatttccagCCTTCCATATGACCAAGGACATGGTGCCAGGATCTTATCCTAGGACTCCAGAGGAACGTACCACAGCCACCAAGAAGTATAACATGCGAGTGGAGGAGTATGAGCCATACCCTGATGATGGTATGGGgtaagaggggtggctgactttgtgcatttgttgcaggatcagttgggatg #### Neurl1a_ID10161_4 --> 2 - 1 Original Alignment acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagacAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTggtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc Alignment from CESAR acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagacAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTggtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc Alignment from Spaln_aa2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagACAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTGgtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc Alignment from Spaln_nt2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCCTT---CACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagACAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTGgtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc Alignment from Pairagon ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCG---CTCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagACAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTGgtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc Alignment from Exonerate_protein2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagACAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTGgtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc Alignment from Exonerate_coding2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagACAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTGgtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc Alignment from GeneWise ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG tgggacatgaaaggtaacaattctcctgcccacgcttgctatgcccacagACAGTGAATTAGTGCTGCCTGACTGCCTGCAGCCACACTCCTCCTTCACCACATTGCGGCAGCCATCATTGCGGTGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGACCTCAATGTGTCAGGGGCCGACAGTGATGATGGCACGGCGCCTGCCGGTTGCCCAATCCCACAGAACTTATTCAACTCACAGTACACCCGTGCACTGCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCGCTGGTGTGCATGTCCGCATCCTAGACGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCCGGCCTGTGCGTGTAGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCGAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTACCCTTCAGCCCTGAGGCCCTGGTGGACCGCAAGGAATTCTGGGCGGTGTGTCGTGTGCCTGGGCCACTGCACAGCGGTGAGATTCTGGGCCTTGTGGTCAACACGGATGGAGAGCTGCACTTGAGTCACAATGGTGCAACAGCTGGCATGCAACTGTGCGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTTAGCCTGCATGGAACCATCACACAGGTCCGCATCCTTGgtaggtgctccacccaccaggacataatgcccctctggtccacagcagtc #### Neurl1a_ID10162_5 --> 2 - 1 Original Alignment gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg gaaactttttcctttagtcctatggcaactggtctttctttcacatcaaggcTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAggtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc Alignment from CESAR gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg gaaactttttcctttagtcctatggcaactggtctttctttcacatcaaggcTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAggtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc Alignment from Spaln_aa2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcaactggtctttctttcacatcaagGCTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAGgtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc Alignment from Spaln_nt2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcaactggtctttctttcacatcaagGCTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAGgtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc Alignment from Pairagon GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcaactggtctttctttcacatcaagGCTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAGgtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc Alignment from Exonerate_protein2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcaactggtctttctttcacatcaagGCTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAGgtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc Alignment from Exonerate_coding2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcaactggtctttctttcacatcaagGCTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAGgtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc Alignment from GeneWise GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG gaaactttttcctttagtcctatggcaactggtctttctttcacatcaagGCTCTACCATCATGACTGAACGGGGTGGGCCATCTCTCCCCTGCTCACCTGCTTCCACTCCAACCTCACCCAGTGCTCTGGCCATCCGCCTCTCTGGGCCCTTACTCAGCACTTGCAGTTCTGGGCCTCTAGGTGGCTCTACAGGAGgtatacaccaagaccccttttttcgtcaataaacagaactctcctatggc #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaaaaagaacagctcagcgcttgcctttccttcattatcaatacagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGACGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtgagcactctgcagggggccaggcacacattgacaagagtgcagttgag #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagggCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcacccccggctctccccgcagCT Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagggCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcccatgaccatctgatttcagCT Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcacccccggctctccccgcagCT Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcacccccggctctccccgcagCT Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcacccccggctctccccgcagCT Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcacccccggctctccccgcagCT Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGgtaagacagctggaccctatgctgaatcacccccggctctccccgcagCT Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG------------------------------------------------CT gctcctgcacatctgtgagctagattacgaggtgtgcttttcgtccacagGGCCAGGGCTGTCCCTGGGGGATACAGCCCTGCAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAGGGTAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTTCGTAGCTACAAGGTAAGACAGCTGGACCCTATGCTGAATCACCCCCGGCTCTCCCCGCAGCT #### Nhlrc2_ID12137_6 --> 2 - 2 Original Alignment gtTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAag tacatctcctaacaacctcattacatgttgctgcaattcatcttcaataggtTCGGAGGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAaggtgagctgttggtacgagacagcacagcttccttggctaggacaccatga Alignment from CESAR gtTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAag tacatctcctaacaacctcattacatgttgctgcaattcatcttcaataggtTCGGAGGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAaggtgagctgttggtacgagacagcacagcttccttggctaggacaccatga Alignment from Spaln_aa2Genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacatctcctaacaacctcattacatgttgctgcaattcatcttcaatagGTTCGGAGGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAAGgtgagctgttggtacgagacagcacagcttccttggctaggacaccatga Alignment from Spaln_nt2Genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacatctcctaacaacctcattacatgttgctgcaattcatcttcaatagGTTCGGAGGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAAGgtgagctgttggtacgagacagcacagcttccttggctaggacaccatga Alignment from Pairagon GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacatctcctaacaacctcattacatgttgctgcaattcatcttcaatagGTTCGGAGGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAAGgtgagctgttggtacgagacagcacagcttccttggctaggacaccatga Alignment from Exonerate_protein2genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacatctcctaacaacctcattacatgttgctgcaattcatcttcaatagGTTCGGAGGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAAGgtgagctgttggtacgagacagcacagcttccttggctaggacaccatga Alignment from Exonerate_coding2genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacatctcctaacaacctcattacatgttgctgcaattcatcttcaatagGTTCGGAGGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAAGgtgagctgttggtacgagacagcacagcttccttggctaggacaccatga Alignment from GeneWise ---CAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacatctcctaacaacctcattacatgttgctgcaattcatcttcaataggttcggagGTGCAGAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTTCTCCTAGACTCTGGGACACTTCCAAAGAAAAGgtgagctgttggtacgagacagcacagcttccttggctaggacaccatga #### Nmrk1_ID4437_3 --> 0 - 1 Original Alignment CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATg atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATggtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga Alignment from CESAR CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATg atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATggtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga Alignment from Spaln_aa2Genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga Alignment from Spaln_nt2Genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga Alignment from Pairagon CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga Alignment from Exonerate_protein2genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga Alignment from Exonerate_coding2genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga Alignment from GeneWise CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG atctctttgctctatagtgtcttggtgggcttctctctcttcccttctagCCAGAGGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtaagtttggaaaatatgatgataggttagggagcaagctacaatgagga #### Nmrk1_ID4441_7 --> 2 - 1 Original Alignment ttTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATg gcatgccctttctttcaaacattgttgatccttaaagattccttacctagtcTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATggtaagtcttttttctgtcagattgtgtggtggagggaaagcaaatattca Alignment from CESAR ttTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATg gcatgccctttctttcaaacattgttgatccttaaagattccttacctagtcTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATggtaagtcttttttctgtcagattgtgtggtggagggaaagcaaatattca Alignment from Spaln_aa2Genome TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATG gcatgccctttctttcaaacattgttgatccttaaagattccttacctagTCTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATGgtaagtcttttttctgtcagattgtgtggtggagggaaagcaaatattca Alignment from Spaln_nt2Genome TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATG gcatgccctttctttcaaacattgttgatccttaaagattccttacctagTCTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATGgtaagtcttttttctgtcagattgtgtggtggagggaaagcaaatattca Alignment from Pairagon TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATG gcatgccctttctttcaaacattgttgatccttaaagattccttacctagTCTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATGgtaagtcttttttctgtcagattgtgtggtggagggaaagcaaatattca Alignment from Exonerate_protein2genome TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATGGT gcatgccctttctttcaaacattgttgatccttaaagattccttacctagTCTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATGGTaagtcttttttctgtcagattgtgtggtggagggaaagcaaatattca Alignment from Exonerate_coding2genome TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATGGT gcatgccctttctttcaaacattgttgatccttaaagattccttacctagTCTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATGGTaagtcttttttctgtcagattgtgtggtggagggaaagcaaatattca Alignment from GeneWise TTTACCTGGATGGAACAAGGTCTGAAGAGGACCTCTTCTCTCAGGTGTATGAAGATGTCAAGCAGGAACTAGAGAAGCAAAATGGTTTG gcatgccctttctttcaaacattgttgatccttaaagattccttacctagTCTACCTGGATGGAACAAGGTCTGAAGAGGACCTTTTCTCACAAGTGTATGAAGACGTAAAGCAGGAACTAGAGAGGCAAAATGGTAAGtcttttttctgtcagattgtgtggtggagggaaagcaaatattca #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagtGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGtgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg Alignment from CESAR tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagtGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGtgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg Alignment from Spaln_aa2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg Alignment from Spaln_nt2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg Alignment from Pairagon TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg Alignment from Exonerate_protein2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg Alignment from Exonerate_coding2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg Alignment from GeneWise TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT agtttgagtaaggtacacagaggctgacaactcccttgaccttcctttagTGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtaagtttcagcttccaggcaggccatatatcagtattatctgactccgg #### Nrxn2_ID1751_7 --> 0 - 0 Original Alignment GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta Alignment from CESAR GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta Alignment from Spaln_aa2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta Alignment from Spaln_nt2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta Alignment from Pairagon GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta Alignment from Exonerate_protein2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta Alignment from Exonerate_coding2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta Alignment from GeneWise GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatatcggttgtctcctgtatatggtttttctttccctttgcagGTGACGATCTCAGTCGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCGCCTGTCAGCAACAACTTCATGGGCTGCCTCACAGATgtacgcggggatgtggttggctggcctgccttgggctttaggttgcctta #### Nrxn2_ID1752_8 --> 0 - 1 Original Alignment GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGAC---GGGCGCAAAg tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAA---CTGGATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAggtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc Alignment from CESAR GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGAC---GGGCGCAAAg tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAACTG---GATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAggtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc Alignment from Spaln_aa2Genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGAC---GGGCGCAAAG tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAA---CTGGATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAGgtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc Alignment from Spaln_nt2Genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACG---GGCGCAAAG tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAAC---TGGATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAGgtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc Alignment from Pairagon GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAG---GGACGGGCGCAAAG tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAAC---TGGATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAGgtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc Alignment from Exonerate_protein2genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGAC---GGGCGCAAAG tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAA---CTGGATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAGgtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc Alignment from Exonerate_coding2genome GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGAC---GGGCGCAAAG tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAA---CTGGATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAGgtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc Alignment from GeneWise GTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGAC---GGGCGCAAAG tcagacttatcgctcttttgcttccctcaacacacccttctatgttgtagGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCGACTTGCTAAGCAAGGTGACCCAAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCGGCTTTGGACCCAGTGACTTTTGAGAGTCCTGAGGCCTTTGTTGCACTGCCCCACTGGAGTGCCAAGAGCACTGGTTCCATCTGTCTGGACTTCAGGACAACCGAGCCCAATGGGTTGTTACTCTTTAGCCAGGGACGGCAGGCTGGGGCTGGGGTAGGCAGTCATAGTCCCACCCAGAGGGCTGATTACTTTGCCATGGAACTG---GATGGCTACCTTCACATTCTGCTGCATATGGGCTCCGGGGGCATCAAGCTGCAGGCATCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCATGTGGACTTTCAGAGAGAGGCTGGGCGTAAAGgtgagtaggcccctagacattccttcccctagcaattcttgtctgcctgc #### Nrxn2_ID1753_9 --> 2 - 1 Original Alignment gcTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGC------GTTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAg tcggtgataagttctctccatactgaggtcatctgatcctttttccttaggcTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAggttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga Alignment from CESAR gcTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAg tcggtgataagttctctccatactgaggtcatctgatcctttttccttaggcTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAggttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga Alignment from Spaln_aa2Genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG tcggtgataagttctctccatactgaggtcatctgatcctttttccttagGCTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAGgttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga Alignment from Spaln_nt2Genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGG---GCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGC------TGTGGGCGTTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG tcggtgataagttctctccatactgaggtcatctgatcctttttccttagGCTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAGgttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga Alignment from Pairagon GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGG---GCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGC------TGTGGGCGTTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG tcggtgataagttctctccatactgaggtcatctgatcctttttccttagGCTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAGgttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga Alignment from Exonerate_protein2genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG tcggtgataagttctctccatactgaggtcatctgatcctttttccttagGCTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAGgttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga Alignment from Exonerate_coding2genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG tcggtgataagttctctccatactgaggtcatctgatcctttttccttagGCTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAGgttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga Alignment from GeneWise GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGGGC---GGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG tcggtgataagttctctccatactgaggtcatctgatcctttttccttagGCTCCATTTCTGTGAACAGCCGCAGTACGCCATTTTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGTGAGCTGTACCTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGGAGTCGGGATCTCCGAGGGCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGGCACTGGCACCTTTTACCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGTCTGTGACTGCATTGGTACTGGCATTCTAGGTAGGGTCTGTGAGAGAGgttcttcctgccctgtggcctgagaagaatcacctttgccaccccaatga #### Nrxn2_ID1765_15 --> 2 - 1 Original Alignment ggGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATg aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagggGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATggtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg Alignment from CESAR ggGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATg aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagggGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATggtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg Alignment from Spaln_aa2Genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagGGGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATGgtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg Alignment from Spaln_nt2Genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagGGGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATGgtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg Alignment from Pairagon GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagGGGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATGgtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg Alignment from Exonerate_protein2genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagGGGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATGgtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg Alignment from Exonerate_coding2genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagGGGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATGgtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg Alignment from GeneWise GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG aggtggcaaagtggagtggttcctaacacccatatttctcacacgtacagGGGAGTTGTATATTGGCGGTCTAAGCAAAAACATGTTCAGCAACCTGCCCAAGCTGGTAGCCTCCCGGGATGGCTTTCAAGGCTGCTTGACTTCTGTGGACCTCAATGGACGCCTCCCAGATCTCATTGCTGATGCCCTACACCGCATTGGCCAGGTGGAGAGGGGCTGTGATGgtagaagcgggcagtgtggggcaattaggtaagcattcttggacaaggtg #### Nt5c2_ID10039_14 --> 2 - 1 Original Alignment gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt gcctttagtatctagttggtacacttttctaacttctcctggccccacaggtTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCtgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta Alignment from CESAR gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt gcctttagtatctagttggtacacttttctaacttctcctggccccacaggtTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCtgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta Alignment from Spaln_aa2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT gcctttagtatctagttggtacacttttctaacttctcctggccccacagGTTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCTgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta Alignment from Spaln_nt2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT gcctttagtatctagttggtacacttttctaacttctcctggccccacagGTTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCTgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta Alignment from Pairagon GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT gcctttagtatctagttggtacacttttctaacttctcctggccccacagGTTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCTgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta Alignment from Exonerate_protein2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT gcctttagtatctagttggtacacttttctaacttctcctggccccacagGTTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCTgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta Alignment from Exonerate_coding2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT gcctttagtatctagttggtacacttttctaacttctcctggccccacagGTTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCTgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta Alignment from GeneWise GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT gcctttagtatctagttggtacacttttctaacttctcctggccccacagGTTCATCTGATACAATCTGTGAACTGTTGGGAGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGCTgtgagcactatccttctcagcttagcctttcaactcacctctgcacctta #### Nt5c2_ID10042_11 --> 0 - 0 Original Alignment AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt Alignment from CESAR AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt Alignment from Spaln_aa2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt Alignment from Spaln_nt2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt Alignment from Pairagon AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt Alignment from Exonerate_protein2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt Alignment from Exonerate_coding2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt Alignment from GeneWise AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgtgcctttgttgttgtcttatgaaggatggctccttatccctctcccagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCCAAGgtgagctagatcttgtcaagctgacttactatcaccttgcattaattagt #### Nt5c2_ID10047_6 --> 1 - 1 Original Alignment aCCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAg gaggtgttaactgcttgtttagtacataaacatctatcattttactctagaCCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTggtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc Alignment from CESAR aCCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAg gaggtgttaactgcttgtttagtacataaacatctatcattttactctagaCCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTggtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc Alignment from Spaln_aa2Genome ACCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAG gaggtgttaactgcttgtttagtacataaacatctatcattttactctagACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTGgtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc Alignment from Spaln_nt2Genome ACCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAG gaggtgttaactgcttgtttagtacataaacatctatcattttactctagACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTGgtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc Alignment from Pairagon ACCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAG gaggtgttaactgcttgtttagtacataaacatctatcattttactctagACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTGgtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc Alignment from Exonerate_protein2genome ACCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAG gaggtgttaactgcttgtttagtacataaacatctatcattttactctagACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTGgtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc Alignment from Exonerate_coding2genome ACCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAG gaggtgttaactgcttgtttagtacataaacatctatcattttactctagACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTGgtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc Alignment from GeneWise ACCAGAAACTAGAGAGCAGTATCCAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAG gaggtgttaactgcttgtttagtacataaacatctatcattttactctagACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAACAAGATGACACTGAACGGTTTTACATTCTGAACACACTATTTAATCTCCCTGgtaaaatcctatgtctgcatagacgttgttcctttgttccagggccatgc #### Nt5c2_ID10063_2 --> 1 - 2 Original Alignment aATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACcg tccatggccatacaatataacagtgtagtcttgttccattctgatcctagaCTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACcggtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata Alignment from CESAR aATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACcg tccatggccatacaatataacagtgtagtcttgttccattctgatcctagaCTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACcggtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata Alignment from Spaln_aa2Genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggccatacaatataacagtgtagtcttgttccattctgatcctagACTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACCGgtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata Alignment from Spaln_nt2Genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggccatacaatataacagtgtagtcttgttccattctgatcctagACTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACCGgtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata Alignment from Pairagon AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggccatacaatataacagtgtagtcttgttccattctgatcctagACTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACCGgtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata Alignment from Exonerate_protein2genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggccatacaatataacagtgtagtcttgttccattctgatcctagACTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACCGgtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata Alignment from Exonerate_coding2genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggccatacaatataacagtgtagtcttgttccattctgatcctagACTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACCGgtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata Alignment from GeneWise CTCCGATTCCGGGCCATCCGCTGCTGTCTTCTGACCTCGAAGAGCACCAGAATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG ATACAATATAACAGTGTA---------GTCTTGTTCCATTCTGATCCTAGACTTCATCCTACAAACAAAATGATGACTACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCCTTGAAAAAGTATCGGCAAGAAGCCTATCACCGgtcagtcagcttgatgaggtctgttttgttgttccatttgggtgtgaata #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcacaatctctgagactttccgttttctccaatatcaataaagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCCACCCTCCGCATCATCAAAGAGAACATTCCTGAGgtgagtgttctttctttttttatttcaccattttaacttaattagctagt #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from CESAR GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Spaln_nt2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Pairagon GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Exonerate_protein2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from Exonerate_coding2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc Alignment from GeneWise GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aatccagttcttattcagtttcttattatgtttatattttgttttaacagGATGGCCATGAGCTACCCCCTCCGATTTCCTTTGATGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtatgttgtggggttagaattagaactctgagagaagagaacactggtcc #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagccCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagccCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATG caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAGTGTGTTTCTGTTTTATGAAACCTAGAGgtggggtgaatattgagctcag Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATG caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAGTGTGTTTCTGTTTTATGAAACCTAGAGgtggggtgaatattgagctcag Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAG caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAGTgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag #### Nxf1_ID2359_19 --> 1 - 2 Original Alignment gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcaggCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAaagcatgtgctggtcctagttatgacgaccaagtggatcatcatacaatgag Alignment from CESAR gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcaggCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAaagcatgtgctggtcctagttatgacgaccaagtggatcatcatacaatgag Alignment from Spaln_aa2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAAAgcatgtgctggtcctagttatgacgaccaagtggatcatcatacaatgag Alignment from Spaln_nt2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAAAgcatgtgctggtcctagttatgacgaccaagtggatcatcatacaatgag Alignment from Pairagon GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAAAgcatgtgctggtcctagttatgacgaccaagtggatcatcatacaatgag Alignment from Exonerate_protein2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAAAgcatgtgctggtcctagttatgacgaccaagtggatcatcatacaatgag Alignment from Exonerate_coding2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAAAgcatgtgctggtcctagttatgacgaccaagtggatcatcatacaatgag Alignment from GeneWise GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAG----------------------------- cattatttgccaacttgtttaagattagtcaaggcttccatgctctgcagGCTATGTATTGTAAATGATGAGTTACTTGTCCGGAATGCTAGCCCTGAAGAAATCCAAAGAGCCTTTGCTATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACACTTTCCCCAGAACAGCAGGAAATGCTGCAAACATTTTCAACCCAAACTGGCATGAACCTTGACTGGTCTCAAAAGCATGTGCTGGTCCTAGTTATGACGACCAAgtggatcatcatacaatgag #### Obfc1_ID10232_4 --> 2 - 1 Original Alignment acCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATt ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagacCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATtgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca Alignment from CESAR acCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATt ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagacCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATtgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca Alignment from Spaln_aa2Genome ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagACCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATTgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca Alignment from Spaln_nt2Genome ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagACCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATTgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca Alignment from Pairagon ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagACCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATTgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca Alignment from Exonerate_protein2genome ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagACCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATTgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca Alignment from Exonerate_coding2genome ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagACCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATTgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca Alignment from GeneWise ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctctctgctcttcaaaccataaccagcagtttggggatgtgtccttgtagACCCGGCTATCCTGAGCACTGCACGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTCCAGGAAACCATTGAGCAGAAAACTAGGATAGGGATTGGAGATATCATCAGAGTCAGAGGCTCTGTCCGCATGTTCAGAGAGGAGCAAGAGATTTGTGCCAACATTTATTgtaagaacatgaagttcctgccagatgaactgatatcctcagtgtgctca #### Oosp2_ID3257_3 --> 0 - 2 Original Alignment GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTcg tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTcggtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga Alignment from CESAR GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTcg tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTcggtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga Alignment from Spaln_aa2Genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTCGgtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga Alignment from Spaln_nt2Genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTCGgtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga Alignment from Pairagon GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTCGgtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga Alignment from Exonerate_protein2genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTCGgtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga Alignment from Exonerate_coding2genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTCGgtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga Alignment from GeneWise GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG tagcttttatgttgtacaatatctccctttctttgtccattctctggcagGTTATCTCAAACGAAATTGTCTGCTTTGAAACTGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTCCAGATAGTTCCTTTACAGTGTTCTGCCTCTCGgtgaagcttatgaacctctctcctttgagttgtattcacagcaatagaga #### Oosp3_ID3271_3 --> 0 - 2 Original Alignment CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCag cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCaggtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta Alignment from CESAR CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCag cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCaggtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta Alignment from Spaln_aa2Genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCAGgtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta Alignment from Spaln_nt2Genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCAGgtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta Alignment from Pairagon CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCAGgtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta Alignment from Exonerate_protein2genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCAGgtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta Alignment from Exonerate_coding2genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCAGgtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta Alignment from GeneWise CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cagacatttccgctgtacacacaagtcacttggttttgttttgtttacagCATGCATTTGATGGAACTATAGTTAACACCTGGATCGCCTATATGCCCAGGAATATTTCTATTTATGCTGAGCTTCAACTTCAGTGCATTATTCCCAGgtaagtacaaaacgtgccaaacacccatggactccttggatcattttcta #### Opalin_ID8092_3 --> 0 - 0 Original Alignment ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagACATCCTCCCCAGTTGTCACTAGTGCCAGAGCCACGgtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact Alignment from CESAR ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagACATCCTCCCCAGTTGTCACTAGTGCCAGAGCCACGgtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact Alignment from Spaln_aa2Genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagACATCCTCCCCAGTTGTCACTAGTGCCAGAGCCACGgtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact Alignment from Spaln_nt2Genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagACATCCTCCCCAGTTGTCACTAGTGCCAGAGCCACGgtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact Alignment from Pairagon ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagACATCCTCCCCAGTTGTCACTAGTGCCAGAGCCACGgtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact Alignment from Exonerate_protein2genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagACATCCTCCCCAGTTGTCACTAGTGCCAGAGCCACGgtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact Alignment from Exonerate_coding2genome ACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACA tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagACATCCTCCCCAGTTGTCACTAGTGCCAGAGCCACGgtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact Alignment from GeneWise tgcatttaatcaatttagcaacttatctattgtgttttttacactgacagacatcctccccagttgtcactagtgccagagccacggtgagtacatgatctaatggcaattcagttgtttgcaaagatccagaact #### Osbp_ID3345_4 --> 0 - 1 Original Alignment GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACggtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt Alignment from CESAR GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACggtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt Alignment from Spaln_aa2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACGgtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt Alignment from Spaln_nt2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACGgtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt Alignment from Pairagon GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACGgtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt Alignment from Exonerate_protein2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACGgtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt Alignment from Exonerate_coding2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACGgtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt Alignment from GeneWise GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG aagtctgtctgactgttgaggtggccattccctcaaactctctgctgtagGCTTGCAGAGATTTCCTCATGTTAGCCCAGACTCACAGTAAGAAGTGGCAGAAGTCACTTCAGTATGAAAGGGACCAGAGAATCCAACTGGAAGCAACCCTTGAACAACTGGAAAAGCAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTGCTGCCAGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCACGgtaaggcagttggccgttgcacagctctgttgtgggacgaccaagaggtt #### Osbp_ID3348_7 --> 0 - 0 Original Alignment TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat Alignment from CESAR TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat Alignment from Spaln_aa2Genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat Alignment from Spaln_nt2Genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat Alignment from Pairagon TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat Alignment from Exonerate_protein2genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat Alignment from Exonerate_coding2genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat Alignment from GeneWise TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG cagataatttgttgttgtaaccaatcaatctcgttcctctctgtcctcagTACAAGCATCAGCTCGAGGAGACCAAAAAGGAAAAGCGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCTCTAAGATCCCAATGCCAgtaatgccctcagacctgacatccttatgacatctcttttatacgcgcat #### Osbp_ID3352_11 --> 0 - 0 Original Alignment TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTA---------GCAAGAAAG aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGGCAAGAAAGgtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat Alignment from CESAR TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGgcaagaaaggtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat Alignment from Spaln_aa2Genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGgcaagaaaggtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat Alignment from Spaln_nt2Genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGgcaagaaaggtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat Alignment from Pairagon TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGgcaagaaaggtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat Alignment from Exonerate_protein2genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGgcaagaaaggtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat Alignment from Exonerate_coding2genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGgcaagaaaggtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat Alignment from GeneWise TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG--------- aacttgggacagtctacataaaactaatatttgttcatcttgtgtttaagTCAGGTGAGATTGACATTGTAAACCACAAGACAGGGGACAAGTGCAATCTTAAATTTGTTCCTTACACCTACTTCTCTCGGGATTTGGCAAGAAAGGCAAGAAAGgtgggcgttttttattagacctgcactcatccatgtgcatgtatgtgtat #### Osbp_ID3353_12 --> 0 - 2 Original Alignment GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTAcc caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTActgtgctcatggcctccctgccttctcttataattaatttttgttataatta Alignment from CESAR GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTAcc caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTActgtgctcatggcctccctgccttctcttataattaatttttgttataatta Alignment from Spaln_aa2Genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACTgtgctcatggcctccctgccttctcttataattaatttttgttataatta Alignment from Spaln_nt2Genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACTgtgctcatggcctccctgccttctcttataattaatttttgttataatta Alignment from Pairagon GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACTgtgctcatggcctccctgccttctcttataattaatttttgttataatta Alignment from Exonerate_protein2genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACTgtgctcatggcctccctgccttctcttataattaatttttgttataatta Alignment from Exonerate_coding2genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACTgtgctcatggcctccctgccttctcttataattaatttttgttataatta Alignment from GeneWise GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC caataggtggcttgcttgtgttgtcttattgttctctcttgtcttccaagGTGACAGGTGAGGTGACAGAGCCATCAGGAAAAGTTCACTTTGCCCTTCTAGGGACATGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCTAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCTTTACTgtgctcatggcctccctgccttctcttataattaatttttgttataatta #### Ostf1_ID4421_9 --> 2 - 1 Original Alignment gtGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAg actggggactgttccatacacatatgacagtgcttttattcttcctttaggtGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTggtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt Alignment from CESAR gtGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAg actggggactgttccatacacatatgacagtgcttttattcttcctttaggtGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTggtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt Alignment from Spaln_aa2Genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG actggggactgttccatacacatatgacagtgcttttattcttcctttagGTGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTGgtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt Alignment from Spaln_nt2Genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG actggggactgttccatacacatatgacagtgcttttattcttcctttagGTGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTGgtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt Alignment from Pairagon GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG actggggactgttccatacacatatgacagtgcttttattcttcctttagGTGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTGgtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt Alignment from Exonerate_protein2genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG actggggactgttccatacacatatgacagtgcttttattcttcctttagGTGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTGgtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt Alignment from Exonerate_coding2genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG actggggactgttccatacacatatgacagtgcttttattcttcctttagGTGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTGgtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt Alignment from GeneWise GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG actggggactgttccatacacatatgacagtgcttttattcttcctttagGTGCAAGGACAGACTTGAGAAACAATGAGAAGAAACTAGCCTTGGACATGGCCACCAATGCTGCCTGTGCATCACTCCTGAAGAAGAAGCAGCAGGAAACTGgtaagctctaaatcacatctaaagaaaaactacatctgaagccaagaggt #### Pacs1_ID881_13 --> 1 - 0 Original Alignment cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagcAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc Alignment from CESAR cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagcAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc Alignment from Spaln_aa2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagCAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc Alignment from Spaln_nt2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagCAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc Alignment from Pairagon CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagCAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc Alignment from Exonerate_protein2genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagCAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc Alignment from Exonerate_coding2genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagCAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc Alignment from GeneWise CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tgtacctgtggggttgaaatggctggttcccccccccgcaatggccccagCAAGGTGGAAGGGACGCACACACCTCCGCAGAAGAGAAGCACTCCTCTGAAGGAGCGACAGCTTCTGAAACCCCTGAGTGAGAGAACCAACAGCGCTGACAGTGAGCGGTCTCCTGATCTGGGCCACAGCACACAGgtaatttcaaatccctggaagattaaggcctcttacttgaatttaaggtc #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCaagtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from CESAR GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCaagtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Pairagon GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ttactagggaggactccagattcatagaagtctatctgtctgtccctcagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACTGTATGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCGAAGCCCAAACTCAAgtaagtccccaaagccccttcctcccaagctccctattgctcctctttgt #### Pank1_ID6986_4 --> 1 - 2 Original Alignment tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAaggtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc Alignment from CESAR tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAaggtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc Alignment from Spaln_aa2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc Alignment from Spaln_nt2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc Alignment from Pairagon TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc Alignment from Exonerate_protein2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc Alignment from Exonerate_coding2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc Alignment from GeneWise TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG ggcatatcccagcgttacaattttcagacttcacctgtgtctttatacagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtgagcaccatctggctagaagcaactaaaaatccacacagatcaggtgc #### Pank1_ID6988_3 --> 0 - 2 Original Alignment ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCaggtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta Alignment from CESAR ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCaggtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta Alignment from Spaln_aa2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta Alignment from Spaln_nt2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta Alignment from Pairagon ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta Alignment from Exonerate_protein2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta Alignment from Exonerate_coding2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta Alignment from GeneWise ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG ccatgcgatagcagactacttcatctaaatggctttctatgattccttagATCGCGGACCTGCAACTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAATCCGTACCCTATGTTACTGGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtaggcacaccctcaaccaggagggcctcactaagctcaggctatgccta #### Papss2_ID6707_3 --> 2 - 0 Original Alignment gtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcaggtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg Alignment from CESAR gtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcaggtCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg Alignment from Spaln_aa2Genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg Alignment from Spaln_nt2Genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg Alignment from Pairagon GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg Alignment from Exonerate_protein2genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg Alignment from Exonerate_coding2genome GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg Alignment from GeneWise GTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTATCTCACGCCATCCCATGTTACTCTCTGGATGGGGACAATGTCCGTCATGGCCTTAATAAGAACCTGGGATTCTCTGCGGGGGACCGAGAAGAGAATATCCGCCGGATCGCGGAGGTGGCCAGGCTCTTTGCCGACGCCGGCCTGGTTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAG caccaccctagcctccctgtcaagtcaccagtgctatgcttacctttcagGTCTCTCTGGTGCTGGGAAAACAACCATAAGCTTTGCTTTGGAAGAGTACCTTGTAACTCACGCCATCCCATGTTACTCTCTGGACGGGGACAATGTTCGTCATGGCTTTAATAAAACCCTGGGGTTCTCTGCAGGGGACCGAGATGAGAATATCCGGCGGATTGCAGAGGTGGCAAGACTTTCTGCTGATGCTGGCCTGATTTGCATCACCAGCTTTATCTCTCCTTTTGCAAAGgtacttgatgcccagtgtgggagttggtattgaatcctccctgcactgtg #### Papss2_ID6710_6 --> 0 - 0 Original Alignment AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac Alignment from CESAR AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac Alignment from Spaln_aa2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac Alignment from Spaln_nt2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac Alignment from Pairagon AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac Alignment from Exonerate_protein2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac Alignment from Exonerate_coding2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac Alignment from GeneWise AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG atattccttggccactctccacaacaacactgtaaacttttactttacagAACATTGTCCCTCACACCACCATCAAAAGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACAAAGgtaagtgagtgtagactgtcaggaatttgtatcttagaatctattattac #### Patl1_ID3315_3 --> 2 - 0 Original Alignment atGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagatGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt Alignment from CESAR atGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagatGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt Alignment from Spaln_aa2Genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt Alignment from Spaln_nt2Genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt Alignment from Pairagon ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt Alignment from Exonerate_protein2genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt Alignment from Exonerate_coding2genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt Alignment from GeneWise ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA tctgaatacagaatcaatatgcaaaaacttttgtcttctcttgcctgcagATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTAGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAAATTGTGATTGAAAATGAGCTAGAAGATCCAGCCATCATGAGAGCAGTACAGACCAGGCCAGTTTTACAAgtgaggtgccctgatctaggagctcacaatggttctaatagtagcagatt #### Patl1_ID3324_9 --> 1 - 2 Original Alignment aCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaa tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagaCCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaagtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac Alignment from CESAR aCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaa tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagaCCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaagtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac Alignment from Spaln_aa2Genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagACCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac Alignment from Spaln_nt2Genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagACCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac Alignment from Pairagon ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagACCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac Alignment from Exonerate_protein2genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagACCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac Alignment from Exonerate_coding2genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagACCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac Alignment from GeneWise ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA tgaagtgaactaagatgaaacaatcaagatttgctttctgttgactacagACCTCAGGCCCCAATGTTTAGAGCAGACACCACTCACCTTCACCCACAGCACCAGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaggtgtctgtcactcctgatatgtttaggatgtggcgattcaggtgac #### Patl1_ID3326_11 --> 0 - 1 Original Alignment AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTg ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGggtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa Alignment from CESAR AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTg ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGggtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa Alignment from Spaln_aa2Genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGGgtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa Alignment from Spaln_nt2Genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGGgtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa Alignment from Pairagon AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGGgtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa Alignment from Exonerate_protein2genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGGgtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa Alignment from Exonerate_coding2genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGGgtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa Alignment from GeneWise AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG ttagtctgtgtcactcattttgcaataagattttggttgtttttttccagAATTACTTTGAGAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAAAAGGAGTGTACCAAGCTCATCACCCCGCAGGTGGCCAAACTGGAACATGCTTTCCAGCCGGgtacaggttctaacccacctgagaaagtaatgatctggagagagtgcaaa #### Patl1_ID3327_12 --> 2 - 0 Original Alignment tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagtgCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct Alignment from CESAR tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagtgCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct Alignment from Spaln_aa2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagTGCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct Alignment from Spaln_nt2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagTGCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct Alignment from Pairagon TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagTGCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct Alignment from Exonerate_protein2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagTGCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct Alignment from Exonerate_coding2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagTGCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct Alignment from GeneWise TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT ggcgtgatttgccttcaaaagtgttcttattcctgattttatttctatagTGCAGTTTGAGGGCTCATTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGCGAGGATGATgtaagattcattaaaggcagtgtttactggtggtggccattggaaaatct #### Patl1_ID3328_13 --> 0 - 0 Original Alignment GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg Alignment from CESAR GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg Alignment from Spaln_aa2Genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg Alignment from Spaln_nt2Genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg Alignment from Pairagon GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg Alignment from Exonerate_protein2genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg Alignment from Exonerate_coding2genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg Alignment from GeneWise GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA taagaatctttacagagattttacagaacctggcctttctccttgtttagGAAACAAAAGAAAAACAAGTTCGGGATAAAAGAAGAAAAACACTCGTTGTAATTGAGAAAgtgagtgctagatctagaatttatttccatacttagtcttcactcaaagg #### Patl1_ID3329_14 --> 0 - 2 Original Alignment ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGag ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGaggtaagtattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from CESAR ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGag ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGaggtaagtattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Spaln_aa2Genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGAGgtaagtattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Spaln_nt2Genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGAGgtaagtattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Pairagon ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGAGgtaagtattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Exonerate_protein2genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGAGgtaagtattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Exonerate_coding2genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGAGgtaagtattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from GeneWise ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactagtatacgtgttagcatgttattttctttaaactatttcagACCTATAGTTTGCTCCTTGATGTGGAGGATTATGAACGACGGTATCTCCTGAGTCTAGAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCCGGGACAAGAGAGgtaagtattgggcttttgtagagtgggagacactccccattgctgggatg #### Pax2_ID9136_2 --> 2 - 2 Original Alignment caGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCag tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagcaGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCaggtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact Alignment from CESAR caGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCag tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagcaGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCaggtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact Alignment from Spaln_aa2Genome CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagCAGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAGgtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact Alignment from Spaln_nt2Genome CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagCAGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAGgtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact Alignment from Pairagon CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagCAGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAGgtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact Alignment from Exonerate_protein2genome CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagCAGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAGgtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact Alignment from Exonerate_coding2genome CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagCAGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAGgtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact Alignment from GeneWise CAGGGCACGGGGGTGTGAACCAGCTCGGGGGGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAG tgatgcccactgtgtatggggtgttaagtcttattttctgattttttaagCAGGGCATGGAGGTGTGAACCAGCTCAGGGGGGTGTTTGTGAATGGCCGGCCCCTACCTGATGTAGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGGTGTGCGGCCCTGCGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAGgtaagcgccagatggtagtttccctcactgttgagattgtcagttaaact #### Pax2_ID9153_5 --> 2 - 1 Original Alignment ttCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAg ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagttCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAggtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg Alignment from CESAR ttCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAg ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagttCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAggtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg Alignment from Spaln_aa2Genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg Alignment from Spaln_nt2Genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg Alignment from Pairagon TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg Alignment from Exonerate_protein2genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg Alignment from Exonerate_coding2genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg Alignment from GeneWise TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG ctctaacctccaccgcttcactgatagtttgtgctccattctctctgcagTTCCCAGCACAGCCTCCCCTCCTGTTTCCAGTGCCTCTAATGATCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGAATTCCTCGCTCCAATGGTGAGAAGAGGAAACGTGAGGAAGgtgagtggatgggtgagctcttaccacccccttgccattcttttcccgtg #### Pcgf5_ID7126_2 --> 2 - 2 Original Alignment tcTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAag ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagtcTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGaggtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa Alignment from CESAR tcTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAag ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagtcTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGaggtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa Alignment from Spaln_aa2Genome TCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAAG ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagTCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGAGgtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa Alignment from Spaln_nt2Genome TCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAAG ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagTCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGAGgtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa Alignment from Pairagon TCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAAG ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagTCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGAGgtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa Alignment from Exonerate_protein2genome TCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAAG ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagTCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGAGgtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa Alignment from Exonerate_coding2genome TCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAAG ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagTCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGAGgtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa Alignment from GeneWise TCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAATCCATTAGAAATGTTAAG ggtggtgtatctctaaaagtttataagttatccctacctgtgttttgcagTCTGTAAGACCTGTATTGTCCAGCACTTTGAAGACAGCAATGATTGTCCAAGGTGTGGCAACCAAGTTCATGAAACAAACCCATTAGAAATGTTGAGgtagggaaacatatcttgtctatcttcaactaattaaatatacatgtaaa #### Pcgf5_ID7131_7 --> 0 - 0 Original Alignment TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt Alignment from CESAR TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt Alignment from Spaln_aa2Genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt Alignment from Spaln_nt2Genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt Alignment from Pairagon TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt Alignment from Exonerate_protein2genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt Alignment from Exonerate_coding2genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt Alignment from GeneWise TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT taaattcaaaactttctctgtactaagaatgactctgtctttaaaaacagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAATgtaatatgctctaatatttacatgcgtgtataatagcaatagtttgctgt #### Pcgf6_ID10082_5 --> 2 - 1 Original Alignment gaGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTg attgtaactataagtgaagcaatctagtctcatattcctattggtttcaggaGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTggtgagtatggagctgctcagctttctaaacttggatctatttagctttca Alignment from CESAR gaGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTg attgtaactataagtgaagcaatctagtctcatattcctattggtttcaggaGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTggtgagtatggagctgctcagctttctaaacttggatctatttagctttca Alignment from Spaln_aa2Genome GAGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTG attgtaactataagtgaagcaatctagtctcatattcctattggtttcagGAGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTGgtgagtatggagctgctcagctttctaaacttggatctatttagctttca Alignment from Spaln_nt2Genome GAGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTG attgtaactataagtgaagcaatctagtctcatattcctattggtttcagGAGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTGgtgagtatggagctgctcagctttctaaacttggatctatttagctttca Alignment from Pairagon GAGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTG attgtaactataagtgaagcaatctagtctcatattcctattggtttcagGAGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTGgtgagtatggagctgctcagctttctaaacttggatctatttagctttca Alignment from Exonerate_protein2genome GAGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTG attgtaactataagtgaagcaatctagtctcatattcctattggtttcagGAGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTGgtgagtatggagctgctcagctttctaaacttggatctatttagctttca Alignment from Exonerate_coding2genome GAGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTG attgtaactataagtgaagcaatctagtctcatattcctattggtttcagGAGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTGgtgagtatggagctgctcagctttctaaacttggatctatttagctttca Alignment from GeneWise GAGAAAAAAAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTG attgtaactataagtgaagcaatctagtctcatattcctattggtttcagGAGAAAAAAAACAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTGgtgagtatggagctgctcagctttctaaacttggatctatttagctttca #### Pcgf6_ID10083_4 --> 1 - 1 Original Alignment gTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAa aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttaggTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGagtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc Alignment from CESAR gTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAa aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttaggTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGagtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc Alignment from Spaln_aa2Genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttagGTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGAgtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc Alignment from Spaln_nt2Genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttagGTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGAgtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc Alignment from Pairagon GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttagGTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGAgtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc Alignment from Exonerate_protein2genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttagGTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGAgtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc Alignment from Exonerate_coding2genome GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttagGTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGAgtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc Alignment from GeneWise GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aacacatgagaaaatgctcatcatcaatcctcccttggtttcgtttttagGTTGGACCGGCAGTTACAAGACATAGTATACAAGTTAGTGATCGTTCTAGAGGAGAgtactgatctgttatctcatagctgtgaatcccaaagtctccgattctgc #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagcCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagcCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagCCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagCCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagCCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagCCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagCCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCAG ggggaagaaacaaacttctcccccctgtaacaaaacctttcttaccacagCCTAGAGCCATTCCTCTACGGCCTGCATGCCCTGTTCAAGGGAGACTTCCGGATCACCTCCCCCCGTGATGAATGGGTCTTCGCTGACATGGATCTACTTCACCAAGTGGTAGCCCCAGGGGTTCGTATGGCTCTAAAGCTTCACCAGgtaagtggtataggcaaggcagagtaggaggcaggagtgagatatgcctt #### Pcnxl3_ID1168_25 --> 1 - 1 Original Alignment cACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagcACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAggtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from CESAR cACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagcACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAggtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Spaln_aa2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Spaln_nt2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Pairagon CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Exonerate_protein2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Exonerate_coding2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from GeneWise CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg #### Pcnxl3_ID1171_22 --> 1 - 0 Original Alignment cTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagcTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca Alignment from CESAR cTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagcTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca Alignment from Spaln_aa2Genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagCTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca Alignment from Spaln_nt2Genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagCTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca Alignment from Pairagon CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagCTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca Alignment from Exonerate_protein2genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagCTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca Alignment from Exonerate_coding2genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagCTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca Alignment from GeneWise CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG aattaaaccatgtaacgaaatcatgccactgtttttattttatcttaaagCTGCCGGGCTTTGCTGATGACTGTGGTGGGCCTGAAACTGCTGCGCTCAGCATTCTACTGCCCACTGCAGCAGTACCTAACCCTGGACTTCATTGTCCCCCTCTTCCACTTTGACTACCCAAGGGTCTCACAGGGCTTCCTCCTCGACTACTTCCTTATGTCTTTGCTCTGCAGCAAGgtgagtctggataggtctagacccaagctactaagtggttagacttcaca #### Pcnxl3_ID1173_20 --> 0 - 1 Original Alignment TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAg gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAggtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag Alignment from CESAR TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAg gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAggtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag Alignment from Spaln_aa2Genome TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAG gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAGgtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag Alignment from Spaln_nt2Genome TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAG gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAGgtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag Alignment from Pairagon TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAG gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAGgtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag Alignment from Exonerate_protein2genome TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAG gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAGgtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag Alignment from Exonerate_coding2genome TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAG gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAGgtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag Alignment from GeneWise TCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCCGTGGGCTTCTTCACGCATTACCTGCTGCCACAGCTGCGCAAACAGCTCCCCTGGTTCTGCCTCTCACAGCCTGTGCTGAAGCCACTGGAGTATAGCCAGTATGAAGTGCGAG gtggcaacctgacaagtctggactgaggataagttattgttctgtttaagTCAGTTCTGGGCTTCGTGTTATATGCGCTGGCAGGAGCTGTAGGCTTCTTCACACATTACCTGCTCCCACAGCTTCGCAAACAGCTCCCATGGTTCTGCCTCTCACAACCTGTGCTTAAACCACTGGAGTATAGCCAATATGAGGTGCAAGgtaggtaccaccaggtcatgaaaagtcaggctcaacagcagaccagtgag #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Spaln_nt2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Pairagon AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Exonerate_protein2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from Exonerate_coding2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg Alignment from GeneWise AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atggaccctagtattattcactaccaactcttatgcttccccttgaacagAGTGTGCAACCTGATGCAGCATCGCCCATGCACgtatgtacatgagggaaactttggccaatgggcactgggagggtctaagg #### Pcnxl3_ID1187_6 --> 2 - 1 Original Alignment ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAggtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt Alignment from CESAR ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAggtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt Alignment from Spaln_aa2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagTTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAGgtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt Alignment from Spaln_nt2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATG---CTCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagTTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAGgtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt Alignment from Pairagon TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATG---CTCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagTTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAGgtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt Alignment from Exonerate_protein2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagTTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAGgtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt Alignment from Exonerate_coding2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagTTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAGgtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt Alignment from GeneWise TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG ttgcatttctatgtgccctcttctcatctgaccttctgccccatccccagTTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGATCCCTCTCTTCCCAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGTGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACGCCAATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGGACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAGAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACTGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCGCCTGGTGGGCATGCTCCTCCCGAGGGCAGTGACACAGACCCTCCTTCTGAGGCGGAGCTGCCTGCCTCCCCGGACGCCGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCGGGCCAAACAGAGCCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTCTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCCAGCGCCGCTATAGCACTGATAGTTCCTCTTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACACCCAGCACTGCCAGTGCCAAAACTCATGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCCGCTGGTGAGCCTGCTGTGTCACCTCCTGAGGCCCGGAGGGGACCTGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGCGGAGgtgagagtcagctgcagggtgataatgagggatgcctgggggacttgagt #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga #### Pcsk5_ID4232_35 --> 1 - 1 Original Alignment aTATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCg cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagaTACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGG------------TGTGACAAATGT---ggtaagaatgttgttaggtcttccatatgaaaatggaaatttgagaaggcg Alignment from CESAR aTATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAGGGACAG------TGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCg cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagaTACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGG------------TGTGACAAATGT---ggtaagaatgttgttaggtcttccatatgaaaatggaaatttgagaaggcg Alignment from Spaln_aa2Genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGC- cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagATACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGG------------TGTGACAAATGTGgtaagaatgttgttaggtcttccatatgaaaatggaaatttgagaaggcg Alignment from Spaln_nt2Genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGG---TCCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAGGGACAG------TGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTG cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagATACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGGTGTGA---CAAATGTGgtaagaatgttgttaggtcttccatatgaaaatggaaatttgagaaggcg Alignment from Pairagon ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGG---TCCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCA------AGGGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGT cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagATACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGGTgtgacaaatgtggtaagaatgttgttaggtcttccatatgaaaatggaaatttgagaaggcg Alignment from Exonerate_protein2genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagATACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGGTGT---GACAAATGTGGTAAGAATGTTGttaggtcttccatatgaaaatggaaatttgagaaggcg Alignment from Exonerate_coding2genome ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGT---CCACGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAG------GGACAGTGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCG cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagATACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGGTGT---GACAAATGTGGTAAGAATGTTGttaggtcttccatatgaaaatggaaatttgagaaggcg Alignment from GeneWise ATATTATGGAGAAAGCACCAGCGGTAGGTGTGAGAAGTGTGACAAGAGCTGCAAGTCATGCCGAGGTCCA---CGGCCCACAGACTGCCAGTCTTGCGATACATTTTTCTTTCTCCTACGCTCCAAGGGACAG------TGCCACCGCGCTTGCCCTGAGCACTACTATGCAGACCAACACGCCCAGACCTGTGAGAGGTGCCACCCCACTTGTGACAAGTGCAGCGGAAAG cctgtgtgagctataaagagacttagactttggtgtcttttcaattgtagATACTATGGAGAAAGCACCAGTGGAAGGTGTGAGAAATGTGGCAAAGGTTGTAAGTCATGCCTGGGTCCTCCACGGCCCACAGATTGTCATTTGTGTGATACATTTTTTTTCCTCCTTCACTCCAAGGGACAGGGACAGTGCCACCGTGCTTGTCCTGAGCAATACTATGCAGACCAACATGCCCAGACCTGTGAAAGGTGT------------GACAAATGTGGTAAGAATgttgttaggtcttccatatgaaaatggaaatttgagaaggcg #### Pcsk5_ID4233_34 --> 2 - 2 Original Alignment atACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATgg agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagatACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGgggtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca Alignment from CESAR atACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATgg agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagatACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGgggtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca Alignment from Spaln_aa2Genome ATACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATGG agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagATACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGGGgtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca Alignment from Spaln_nt2Genome ATACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATGG agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagATACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGGGgtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca Alignment from Pairagon ATACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATGG agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagATACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGGGgtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca Alignment from Exonerate_protein2genome ATACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATGG agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagATACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGGGgtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca Alignment from Exonerate_coding2genome ATACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATGG agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagATACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGGGgtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca Alignment from GeneWise ATACAACCTGTGTGAAAGAGTGCCCAGAGGGCTACCACACTGACAAGGACAGCCAGCAGTGTGTGCTCTGCCACAGCTCTTGCAGGACCTGCGAAGGACCACACAGCATGCAGTGCCTCTCCTGCCGACCTGGCTGGTTTCAACTGGGCAAGGAGTGCTTGCTGCAATGCAGGGATGG agcaggtgcaggagctatcaggtcgataatattcctctgttaccatttagATACAACCTGTCTGAAAGAGTGCCCAGAGGGCTACCATACTGACAAGGACAGCCAGCAGTGTGTGCTTTGCCATAGCTCTTGTAGGACCTGTGAAGGTCCACACAGCATGCAGTGCCTCTCATGCCGGCCTGGCTGGTTCCAACAGGGCAAAGAGTGCTTGCTACAATGCAGGGAGGGgtgagtagttcagtgcattctccttgtgccaatgccagctgcagtttcca #### Pcsk5_ID4235_32 --> 2 - 1 Original Alignment agTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAg ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagaaTGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAggtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag Alignment from CESAR agTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAg ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagaaTGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAggtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag Alignment from Spaln_aa2Genome AGTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAG ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagAATGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAGgtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag Alignment from Spaln_nt2Genome AGTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAG ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagAATGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAGgtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag Alignment from Pairagon AGTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAG ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagAATGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAGgtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag Alignment from Exonerate_protein2genome AGTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAG ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagAATGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAGgtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag Alignment from Exonerate_coding2genome AGTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAG ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagAATGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAGgtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag Alignment from GeneWise AGTGCATGCCTGACTTCTTTCTATACAATGACATGTGCCATCGTTCCTGTCCCAAGAGCTTCTACCCTGACATGCGCCAGTGTGTCCCCTGCCACAAAAACTGTCTGGAGTGCAATGGCCCCAAGGAAGATGACTGTAAGGTCTGTGCTGATACTTCTAAGGCTCTCCACAATGGATTGTGCTTGGATGAGTGCCCTGAGGGAACCTACAAAGAAGAAGAGAATGATGAATGCAGAG ttcttgggatgaatccccaaggataaccgatttctccttgtcttgtctagAATGCATGCCGGACTTCTTCCTATACAATCACATGTGCCATCGTTCTTGTCCCAAGAGCTTCTACCCTGACATGCATCAGTGTGTTCCTTGCCACAAAAATTGCCTGGAGTGCAATGGCCCGAAGGAAGATGACTGTAAGGTGTGTGCTGATACTTCTAAAGCTCTCCACAATGGATTGTGCTTAGACGAATGCCCTGAGGGAACTTACAAAGAGGAGGAGAACGATGAATGCAGAGgtaggtcacttacagctctgcatgactgtcaaaggatacttaggagctag #### Pcsk5_ID4237_30 --> 2 - 2 Original Alignment gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga atgacagcttttctctgccccaatacccccttgactccctttttctttaggtATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAgagtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat Alignment from CESAR gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga atgacagcttttctctgccccaatacccccttgactccctttttctttaggtATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAgagtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat Alignment from Spaln_aa2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccccaatacccccttgactccctttttctttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAGAgtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat Alignment from Spaln_nt2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccccaatacccccttgactccctttttctttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAGAgtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat Alignment from Pairagon GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccccaatacccccttgactccctttttctttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAGAgtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat Alignment from Exonerate_protein2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccccaatacccccttgactccctttttctttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAGAgtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat Alignment from Exonerate_coding2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccccaatacccccttgactccctttttctttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAGAgtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat Alignment from GeneWise GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccccaatacccccttgactccctttttctttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCTGGTGCTGATCTTTGCCAACAGTGCTTGAGCCAGCCGGACAATACCCTGCTTCTCCATGAGGGTAGGTGCTACCACAGTTGCCCAGAgtgaagcttcatccccagttacaccatactcctaccaagtctgcattcat #### Pcsk5_ID4245_25 --> 2 - 2 Original Alignment atGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACat taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagatGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACatgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag Alignment from CESAR atGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACat taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagatGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACatgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag Alignment from Spaln_aa2Genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag Alignment from Spaln_nt2Genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag Alignment from Pairagon ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag Alignment from Exonerate_protein2genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag Alignment from Exonerate_coding2genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag Alignment from GeneWise ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT taacaactttttagtgatctcaatgtcttgatttttatgtgttcttgcagATGATCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtaagtctaggcctctttgttcatgatcctaagaccaatcactgacttag #### Pcsk5_ID4289_9 --> 0 - 2 Original Alignment ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCaagtagtgcttgatgtctgcattctacctctggggacaagactccttcctac Alignment from CESAR ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCaagtagtgcttgatgtctgcattctacctctggggacaagactccttcctac Alignment from Spaln_aa2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCAAgtagtgcttgatgtctgcattctacctctggggacaagactccttcctac Alignment from Spaln_nt2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCAAgtagtgcttgatgtctgcattctacctctggggacaagactccttcctac Alignment from Pairagon ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCAAgtagtgcttgatgtctgcattctacctctggggacaagactccttcctac Alignment from Exonerate_protein2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCAAgtagtgcttgatgtctgcattctacctctggggacaagactccttcctac Alignment from Exonerate_coding2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCAAgtagtgcttgatgtctgcattctacctctggggacaagactccttcctac Alignment from GeneWise ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA accatgactggcattcagatctaatttgtgtttcttgaattatttgcaagATCACTACTGATCTCCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTCTCGAAGCCAAgtagtgcttgatgtctgcattctacctctggggacaagactccttcctac #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataaagagagtgaggaacatcagtagcgttattgctcttctgtttcagGAAAATGGTGTAGATGCAGTGCATCCCGGCTATGGATTTCTCTCGGAGCGGGCCGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTTCTCAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtagattaggaaacgctccctaggccaggagagacagtccgggtgttctg #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattctcatgctctg Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcacatacatcc Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattctcatgctctg Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattctcatgctctg Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattctcatgctctg Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattctcatgctctg Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattctcatgctctg Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattctcatgctctg #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagcaGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCAT------AGACTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagcaGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCATAGA------CTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagCAGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCAT------AGACTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagCAGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCATA------GACTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagCAGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCATA------GACTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagCAGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCATAGA------CTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagCAGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCATAGA------CTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tccaactatttgaatacaaccaacttctctgtttcttttgtttttattagCAGTACCCCTGGAGCGTGTGTTTGACTATAGTGGGTACTGGGAAGGGGCTAGGGGACTGTATGCAGCTTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACGAGAATGAGATTCCAGGGGGCCAGTACACCAATCTACATTTCCCGGCTCATAGA------CTTGGTTCAAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAAATGCTAGGGGACCTCATCAAAgtggggtggagtgacaccagatgctgggcgactacctctggtgcttgcct #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttagcatttaattttctc Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttatttctccatcccctg Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttagcatttaattttctc Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttagcatttaattttctc Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttagcatttaattttctc Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttagcatttaattttctc Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttagcatttaattttctc Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG tacctctggtgcttgcctggcatccttaccttgtccttctgtgtgtgcagGTGAAATCATCCTCCAAGATTGTGGGAGACCTGGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGCTCTGTGGTGGAGTTCCTGCAGGGCTATATTGGCATCCCACATGGAGGCTTCCCTAAGCCATTCCATTCTAAAgtgagtcaggtgcatcatggtgggaccggggcttagcatttaattttctc #### Pdcd11_ID10108_2 --> 0 - 0 Original Alignment GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt Alignment from CESAR GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt Alignment from Spaln_aa2Genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt Alignment from Spaln_nt2Genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt Alignment from Pairagon GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt Alignment from Exonerate_protein2genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt Alignment from Exonerate_coding2genome GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt Alignment from GeneWise GTTTCCACAGAAGAAGGTCCCATTAAAAGGAAAAAGAGCCAGAAAGGGCCAGCAAAAACAAAAAAATTGAAAATTGAAAAGAGAAAATCCATCAAATCTATAAAAGAGAAGTTTGAAATTCTTAGTCTTGAG gggagtctgggataacaggaattgtttcgatttttgtatttttgttccagGTTTCCACAGAAGAAGGTCCAATTAAAAGGGAAAAAGGCCAGAAAGGCCCAGCAAAAACAAAAAAATTGAAAATCGAAAAGAGAAAATCAGTAAAATCTATAAAAGGGAAGTTTGAAATCCTTAGCCTTGAGgtaaggcaacctttgctatctcttaacaaattctctaagttcaggatgtt #### Pdcd11_ID10117_11 --> 0 - 0 Original Alignment GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac Alignment from CESAR GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac Alignment from Spaln_aa2Genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac Alignment from Spaln_nt2Genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac Alignment from Pairagon GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac Alignment from Exonerate_protein2genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac Alignment from Exonerate_coding2genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac Alignment from GeneWise GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG aaagaatgtattactgctgcattgtggttgtgttcctttgctaattccagGGCACAGTGCTAGCCATAAAGCCATTTGGGATTCTGGTGAAGGTAGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGATATCATGATGAAGAACCCAGAAAAGAAGTACAGCCCGGGGGATGAAGTCAAGTGCAGGgtaagcctctgaggcagtacttgggggtacagatcctcaacatgagtaac #### Pdcd11_ID10118_12 --> 0 - 0 Original Alignment GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAG---CACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag Alignment from CESAR GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACC---CAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag Alignment from Spaln_aa2Genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACC---CAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag Alignment from Spaln_nt2Genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCA---GCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCT---TGATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag Alignment from Pairagon GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACC---CAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCT---TGATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag Alignment from Exonerate_protein2genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACC---CAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag Alignment from Exonerate_coding2genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACC---CAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag Alignment from GeneWise GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAG---CACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG cacctgtggttgtctcacaatgactgtggtcattttctcttctattttagGTTTTGCTT---GATCCTGAGGCTAAGAAGCTAATCATGATACTGAAAAAAAGTCTGGTCACATCTAAACTGTCTCTCATCACATGTTATGAAGGCGCCAAGCCTGGCCCACAGACCCCTGGCATTATCATACGCATCAAAGACTATGGCTGCATTGTGAAGTTCTACAATGATGTGCAAGGGCTGGTACCAAAACATGAGCTTAGCACTCAACAGCATATCCCAGACCCAGAGATGGTCTTTTACACAGGCCAGgtaaggctttctgcaggccttgtgtgattaatgactgtgaatgtaggtag #### Pdcd11_ID10123_17 --> 2 - 1 Original Alignment acTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAg atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagacTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAggtgaggttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct Alignment from CESAR acTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAg atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagacTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAggtgaggttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct Alignment from Spaln_aa2Genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagACTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAGgtgaggttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct Alignment from Spaln_nt2Genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagACTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAGgtgaggttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct Alignment from Pairagon ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagACTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAGgtgaggttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct Alignment from Exonerate_protein2genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagACTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAGgtgaggttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct Alignment from Exonerate_coding2genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagACTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAGgtgaggttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct Alignment from GeneWise ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAGGGCAG atgctgccttttcacttcactagtacctagcaaatctttttttggtgcagACTTTGTATTGATCCAGACACTTGCGGACATGACCCCCAGTATGGTCCTTGATGCTGTTGTCCATGAGGTGTTGGATGATGGTCTTGTAGTGTTCAGTAGTGATCCGGTGCCTGATCTGGTTCTGAGAGCCAGTAGGTATCACCGGTCAGGTGAGgttactcaatatggaaggctggtgtgaccctgtgtgtctcctcct #### Pdcd11_ID10126_20 --> 1 - 2 Original Alignment gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacaggTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAaggtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt Alignment from CESAR gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacaggTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAaggtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt Alignment from Spaln_aa2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacagGTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAAGgtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt Alignment from Spaln_nt2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacagGTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAAGgtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt Alignment from Pairagon GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacagGTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAAGgtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt Alignment from Exonerate_protein2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacagGTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAAGgtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt Alignment from Exonerate_coding2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacagGTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAAGgtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt Alignment from GeneWise GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG agaacatcgattgacattatgaagtgaaggcaggattctgttgtttacagGTTTCTCCCAATAAGTCACCCCAGATTTGTACTGACCATCCTGGAGCTGAGTGTTCGCCCAAGgtgagaggaagcctggtaatgtgcctcacatacatagaggtctgaaggtt #### Pdcd11_ID10131_25 --> 1 - 2 Original Alignment aTGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCag atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagaGGTTACATCCTCCCCACTGCACATCGTGTGCTAGCACTTTCACTACGGTCATCTaggtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag Alignment from CESAR aTGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCag atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagaGGTTACATCCTCCCCACTGCACATCGTGTGCTAGCACTTTCACTACGGTCATCTaggtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag Alignment from Spaln_aa2Genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagAGGTTACATCCTCCCCACTGCACATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag Alignment from Spaln_nt2Genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagAGGTTACATCCTCCCCACTGCACATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag Alignment from Pairagon ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagAGGTTACATCCTCCCCACTGCACATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag Alignment from Exonerate_protein2genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagAGGTTACATCCTCCCCACTGCACATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag Alignment from Exonerate_coding2genome atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagaggttacatcctccccactgcacatcgtgtgctagcactttcactacggtcatctaggtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag Alignment from GeneWise ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG atccacttgcacaacaaattgactctgttccacctctgttgtcttcccagAGGTTACATCCTCCCCACTGCACATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtaagtgttctcagtgtaagaggggagagagaacaactcaggagatgtag #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga #### Pdcd1lg2_ID6280_2 --> 2 - 1 Original Alignment ctTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAg cagcaagctatctctgtctttcagcttttctgccttgtacccacccccagctTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAggtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct Alignment from CESAR ctTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAg cagcaagctatctctgtctttcagcttttctgccttgtacccacccccagctTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAggtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct Alignment from Spaln_aa2Genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG cagcaagctatctctgtctttcagcttttctgccttgtacccacccccagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct Alignment from Spaln_nt2Genome CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG cagcaagctatctctgtctttcagcttttctgccttgtacccacccccagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct Alignment from Pairagon -----------------------CAGCTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG cagcaagctatctctgtctttcagCTTTTCTGCCTTGTACCCACCCCCAGCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct Alignment from Exonerate_protein2genome CAGCTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG cagcaagctatctctgtctttcagcttttctgccttgtacccaccccCAGCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct Alignment from Exonerate_coding2genome CAGCTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG cagcaagctatctctgtctttcagcttttctgccttgtacccaccccCAGCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct Alignment from GeneWise CTTTATTCACCGTGACAGCCCCTAAAGAAGTGTACACCGTAGACGTCGGCAGCAGTGTGAGCCTGGAGTGCGATTTTGACCGCAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTAGAAAATGATACGTCTCTGCAAAGTGAAAGAGCCACCCTGCTGGAGGAGCAGCTGCCCCTGGGAAAGGCTTTGTTCCACATCCCTAGTGTCCAAGTGAGAGATTCCGGGCAGTACCGTTGCCTGGTCATCTGCGGGGCCGCCTGGGACTACAAGTACCTGACGGTGAAAGTCAAAG cagcaagctatctctgtctttcagcttttctgccttgtacccacccccagCTTTATTCACTGTCACAGCCCCCAAAGAGGTGTACACTGTGGATGTTGGCAGCAGTACGAGCCTGGAGTGTGATTTTGACAAAAGAGAATGCACTGAACTGGAAGGGATAAGAGCCAGTTTGCAGAAGGTTGAAAATGATACATCTCTGCAAAGTGAAAGAGCTACCCTGCTTGAAGAACAGCTGCCCCTGGGGAAGGCTCTGTTTCACATCCCTAGTGTCCAGGTGAGAGACTCTGGGCTGTACCACTGCCTGGTTATATGTGGGGCTGCATGGGAGTACAAGTACCTGACAGTGAAAGTCAAAGgtgagcccttgtatacctctctgagttagggctgtgagaaaagggcatct #### Pdcd4_ID11395_2 --> 2 - 1 Original Alignment acCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAg gtggatgctggagatacttagctcatttcttcttaaactctttccaccagacCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAggtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag Alignment from CESAR acCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAg gtggatgctggagatacttagctcatttcttcttaaactctttccaccagacCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAggtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag Alignment from Spaln_aa2Genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG gtggatgctggagatacttagctcatttcttcttaaactctttccaccagACCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag Alignment from Spaln_nt2Genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG gtggatgctggagatacttagctcatttcttcttaaactctttccaccagACCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag Alignment from Pairagon ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG gtggatgctggagatacttagctcatttcttcttaaactctttccaccagACCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag Alignment from Exonerate_protein2genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG gtggatgctggagatacttagctcatttcttcttaaactctttccaccagACCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag Alignment from Exonerate_coding2genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG gtggatgctggagatacttagctcatttcttcttaaactctttccaccagACCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag Alignment from GeneWise GATATAGAAAATGAGCAGACACTGAATGTGAACCCCACTGACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG gtggatgctgGAGATACTTAGCTCATTTCTTCTTAAACTCTTTCCACCAGACCCTGATAATTTCAGTGACTCTCTCTTTTCTGGCGATGAGGAAAATGCTGGCACTGAAGAAATCAAGACCGAAATAAATGGAAATTGGCTCTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGGTTACGGAAAAATTCATCTCGGGATTCGGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCAGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtgagtgtgcatgtggagagacaactggcagaagtccctatgctctcaag #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactttgtgttttccctaccttaaagGTCTTCTCTAAATACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtaaggcaacagctaccagaagtctccccttgccaccccaaaacatcaac #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTccgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTccgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca #### Pde6c_ID7537_7 --> 1 - 0 Original Alignment gTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcaggTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt Alignment from CESAR gTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcaggTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt Alignment from Spaln_aa2Genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcagGTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt Alignment from Spaln_nt2Genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcagGTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt Alignment from Pairagon GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcagGTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt Alignment from Exonerate_protein2genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcagGTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt Alignment from Exonerate_coding2genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcagGTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt Alignment from GeneWise GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ttctctatgtcccaatgatataattatatgacctccctgtctgtcctcagGTCACCGCCAGCTGACCACTGGACACTTATTAGTGGATTACCATCATATGTTGCAGAAAATGGGTTTgtcctgcattagccaaactcaaatactaagtaaccatgtatgcaatgctt #### Pde6c_ID7539_9 --> 0 - 0 Original Alignment AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg Alignment from CESAR AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg Alignment from Spaln_aa2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg Alignment from Spaln_nt2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg Alignment from Pairagon AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg Alignment from Exonerate_protein2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg Alignment from Exonerate_coding2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg Alignment from GeneWise AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aaaattgaatggtgaagacattaaataatctctttttattgtgggttcagAAAGGATCAGTAGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTGCCCATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatattgtagaacaactg #### Pde6c_ID7549_19 --> 0 - 0 Original Alignment GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac Alignment from CESAR GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac Alignment from Spaln_aa2Genome GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac Alignment from Spaln_nt2Genome GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac Alignment from Pairagon GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac Alignment from Exonerate_protein2genome GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac Alignment from Exonerate_coding2genome GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac Alignment from GeneWise GTAGCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGATCTGGAAAGAACAGTGCTGCAGCAGCAACCAATT agttcttggctagcagggggtatcacaacttggatatgtctgtctcgcagGTATCACTTCTGGTTGCAAATGAATTTTGGGAACAAGGAGACTTGGAGAGAATGGTGCTGCAGCAGCAACCAATTgtacagacccctacatcaccatgttaccttctagaaaccactccccaaac #### Pde6c_ID7551_21 --> 0 - 1 Original Alignment GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAg gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGggtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt Alignment from CESAR GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAg gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGggtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt Alignment from Spaln_aa2Genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGGgtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt Alignment from Spaln_nt2Genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGGgtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt Alignment from Pairagon GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGGgtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt Alignment from Exonerate_protein2genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGGgtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt Alignment from Exonerate_coding2genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGGgtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt Alignment from GeneWise GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG gatgattgaatgtcaagcatcaaactaagccttctttctttgtcttccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTTCAGAATAACAGGGTGGAATGGAGGTCCCTAGCGCAGGAGTACGAGGCAAAGGTGAAGGTGACAGAGGAAGAGACAGGAAAGCAGGAAGAAGAGGCTTCAGATGGAAAGGgtgagttggagccagtgtttaatatatgtgcagtgtggggggttagcagt #### Pdlim1_ID7883_6 --> 2 - 2 Original Alignment ggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTgt tcctgactgcatcctctacttactggtaacctccttcctgactggtccagggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTgtgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg Alignment from CESAR ggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTgt tcctgactgcatcctctacttactggtaacctccttcctgactggtccagggGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTgtgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg Alignment from Spaln_aa2Genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT tcctgactgcatcctctacttactggtaacctccttcctgactggtccagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTGTgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg Alignment from Spaln_nt2Genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT tcctgactgcatcctctacttactggtaacctccttcctgactggtccagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTGTgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg Alignment from Pairagon GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT tcctgactgcatcctctacttactggtaacctccttcctgactggtccagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTGTgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg Alignment from Exonerate_protein2genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT tcctgactgcatcctctacttactggtaacctccttcctgactggtccagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTGTgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg Alignment from Exonerate_coding2genome GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT tcctgactgcatcctctacttactggtaacctccttcctgactggtccagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTGTgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg Alignment from GeneWise GGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGT tcctgactgcatcctctacttactggtaacctccttcctgactggtccagGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCTCCAGTCACCAAAGTGGTTGCATCTGTTGGCAATGCTCAGAAGCTACCTTTCTGTGACAAATGCGGTACAGGTATTGTgtgccaatttgtgcttgtgttagagagttcacagaccatgaaagtgtggg #### Pdlim1_ID7884_5 --> 1 - 1 Original Alignment cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg ggacttacatctcactgtcagcctgattctcacccactctccctccgcagtGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACAAG---------GAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAggtaagagccctttggagggagcctggctctggtgatcgcctcactagaca Alignment from CESAR cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg ggacttacatctcactgtcagcctgattctcacccactctccctccgcagtGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACAAG---------GAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAggtaagagccctttggagggagcctggctctggtgatcgcctcactagaca Alignment from Spaln_aa2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG ggacttacatctcactgtcagcctgattctcacccactctccctccgcagTGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACAAG---------GAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAGgtaagagccctttggagggagcctggctctggtgatcgcctcactagaca Alignment from Spaln_nt2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG ggacttacatctcactgtcagcctgattctcacccactctccctccgcagTGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACA---------AGGAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAGgtaagagccctttggagggagcctggctctggtgatcgcctcactagaca Alignment from Pairagon CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG ggacttacatctcactgtcagcctgattctcacccactctccctccgcagTGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACA---------AGGAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAGgtaagagccctttggagggagcctggctctggtgatcgcctcactagaca Alignment from Exonerate_protein2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG ggacttacatctcactgtcagcctgattctcacccactctccctccgcagTGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACAAG---------GAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAGgtaagagccctttggagggagcctggctctggtgatcgcctcactagaca Alignment from Exonerate_coding2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG ggacttacatctcactgtcagcctgattctcacccactctccctccgcagTGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACAAG---------GAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAGgtaagagccctttggagggagcctggctctggtgatcgcctcactagaca Alignment from GeneWise CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG ggacttacatctcactgtcagcctgattctcacccactctccctccgcagTGTAGTTCAACCGCATCCCTCAGACAGCCTTATTATTGACAAGGATTCCGAGGTGTACAAG---------GAGAAGCAGGAATTAAATGAGCCCCCCAAACAGGCCACATCATTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAGgtaagagccctttggagggagcctggctctggtgatcgcctcactagaca #### Pdlim1_ID7887_3 --> 1 - 0 Original Alignment gTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagaTCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta Alignment from CESAR gTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagaTCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta Alignment from Spaln_aa2Genome GTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagATCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta Alignment from Spaln_nt2Genome GTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagATCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta Alignment from Pairagon GTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagATCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta Alignment from Exonerate_protein2genome GTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagATCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta Alignment from Exonerate_coding2genome GTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagATCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta Alignment from GeneWise GTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGCGTCGGAACCCCAA agggtatcaggaatgttctactttgtctactcagttgtttctttttttagATCTGAGCAAAAGATTTGGTCACCCCTAGTAAGTGAGGATGGGAAACGTCATCCCTACAAGATGAATTTATCATCGGAACCTCAAgtaggtgttgtctgacatttaccactgcgttgccagccacttacctccta #### Pdzd8_ID12952_4 --> 0 - 1 Original Alignment GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAggtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac Alignment from CESAR GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAggtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac Alignment from Spaln_aa2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAGgtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac Alignment from Spaln_nt2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAGgtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac Alignment from Pairagon GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAGgtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac Alignment from Exonerate_protein2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAGgtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac Alignment from Exonerate_coding2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAGgtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac Alignment from GeneWise GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG actcactactttgatatcaatgatttcccctgattttctttctactgtagGTTGAATTGATAAAAGGGAATTTACAAAGTGTTGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATTGAAACTGTGGCCCCAAACTCACCTGCTGCAATGGCAGATCTCCAACGAGGAGATCGGCTCATTGCTATCGGAGgtagacagacactgtatattgtaatatatgtgtacagagaaactagtgac #### Pdzd8_ID12955_2 --> 1 - 2 Original Alignment gTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCag taaaacatgatcattattcagaaagttttcccccaccctcttattgataggTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCaggtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct Alignment from CESAR gTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCag taaaacatgatcattattcagaaagttttcccccaccctcttattgataggTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCaggtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct Alignment from Spaln_aa2Genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG taaaacatgatcattattcagaaagttttcccccaccctcttattgatagGTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCAGgtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct Alignment from Spaln_nt2Genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG taaaacatgatcattattcagaaagttttcccccaccctcttattgatagGTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCAGgtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct Alignment from Pairagon GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG taaaacatgatcattattcagaaagttttcccccaccctcttattgatagGTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCAGgtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct Alignment from Exonerate_protein2genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG taaaacatgatcattattcagaaagttttcccccaccctcttattgatagGTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCAGgtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct Alignment from Exonerate_coding2genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG taaaacatgatcattattcagaaagttttcccccaccctcttattgatagGTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCAGgtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct Alignment from GeneWise GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG taaaacatgatcattattcagaaagttttcccccaccctcttattgatagGTTTAAGCCATTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAGGTTACATTGCTAGAATGTAGCAGgtaggctcgtgggttcctcttcattctacagaaaaagggcagtcttttct #### Peli3_ID757_5 --> 0 - 0 Original Alignment GAG------CGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca Alignment from CESAR GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca Alignment from Spaln_aa2Genome GAGCGGGCAGCCAAATGG------AGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca Alignment from Spaln_nt2Genome GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca Alignment from Pairagon GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca Alignment from Exonerate_protein2genome GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca Alignment from Exonerate_coding2genome GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca Alignment from GeneWise GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG ttcttctgggaagtctcagaattgtgaagtgcttgtgattgtctttacagGAGCGGGCACAAGCAGCCAAATGGAGAACTCCGGATGGTCTAATGGATGGCTTGACAACCAATGGGGGACTGGTGATGCACCCTGCGGGAGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGGAATGTGTACACACTGCGTGATAGTCGATCAGCACAGCAGCGGGGGAAGCTGgtaagcggccttccccatttcaattctttccgctcttaccacctgcagca #### Pi4k2a_ID8401_4 --> 0 - 1 Original Alignment GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTg gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTggtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag Alignment from CESAR GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTg gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTggtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag Alignment from Spaln_aa2Genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTGgtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag Alignment from Spaln_nt2Genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTGgtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag Alignment from Pairagon GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTGgtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag Alignment from Exonerate_protein2genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTGgtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag Alignment from Exonerate_coding2genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTGgtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag Alignment from GeneWise GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtcttgaatcacgccacagagatgcttcttatttaatcttttatttatagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGAAGCAGAACCGCTCCCTGAGAACATGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATCCTGGACTACATAATCCGCAACACTGgtatgtccaggtgtgcttccctgctttgtaccatatccctgctgattcag #### Pi4k2a_ID8402_5 --> 2 - 0 Original Alignment acCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagacCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt Alignment from CESAR acCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagacCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt Alignment from Spaln_aa2Genome ACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt Alignment from Spaln_nt2Genome ACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt Alignment from Pairagon ACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt Alignment from Exonerate_protein2genome ACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt Alignment from Exonerate_coding2genome ACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt Alignment from GeneWise ACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCGATGGATAATTCTAGCTGTCGG cagttctagattgacaccactatttctactgtttttgcccttccttgcagACCGAGGCAATGACAACTGGTTGATCAAATATGACTGTCCAATGGATAATTCTAGCTGTCGGgtatgtagttttacctaatttattgagagtttttagcatgaagcgttgtt #### Pik3ap1_ID8159_10 --> 2 - 1 Original Alignment gtAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAg cactataattctatagattcagtagccaaatgtgccacctatgtcctcaggtAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAggtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc Alignment from CESAR gtAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAg cactataattctatagattcagtagccaaatgtgccacctatgtcctcaggtAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAggtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc Alignment from Spaln_aa2Genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG cactataattctatagattcagtagccaaatgtgccacctatgtcctcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAGgtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc Alignment from Spaln_nt2Genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG cactataattctatagattcagtagccaaatgtgccacctatgtcctcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAGgtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc Alignment from Pairagon GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG cactataattctatagattcagtagccaaatgtgccacctatgtcctcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAGgtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc Alignment from Exonerate_protein2genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG cactataattctatagattcagtagccaaatgtgccacctatgtcctcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAGgtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc Alignment from Exonerate_coding2genome GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG cactataattctatagattcagtagccaaatgtgccacctatgtcctcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAGgtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc Alignment from GeneWise GTAACAGTGTGAAACCGGCCAGTTGGGAGAGAGAACAACACCATCCCTATGGGGAGGAACTTTATCACATTGTGGATGAAGATGAGACCTTCTCTGTGGACCTAGCCAACAGGCCCCCTGTCCCTGTGCCCAGGCCAGAGGCCAGCGCTCCTGGCCCTCCCCCACCGCCTGACAATGAGCCATACATTTCTAAAG cactataattctatagattcagtagccaaatgtgccacctatgtcctcagGTAACAGTGTGAAACCAGCCAGTTGGGAGAGGGAACAACACCACCCCTATGGGGAGGAACTTTATCACATTGTAGATCAAGATGAGACCCTCTCTGTGGACCTAGCCAACAGGCCGCCTGTCCCTGTGCCCAGGCCAGAGGCCAGTGCTCCTGGCCCTCCCCCACCACCTGACAATGAGCCGTACATTCCCAAAGgtaagcgtggcccatgatggctctcagtagggctgggggaagcggagccc #### Pik3ap1_ID8163_6 --> 0 - 1 Original Alignment GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAa ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAagtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa Alignment from CESAR GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAa ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAagtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa Alignment from Spaln_aa2Genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa Alignment from Spaln_nt2Genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa Alignment from Pairagon GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa Alignment from Exonerate_protein2genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa Alignment from Exonerate_coding2genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa Alignment from GeneWise GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ctattcaacactaacacacactaacgcatccatatttttctgtcttccagGCCTTTAAAATGGTGCCCTACAACACAGAGACTCTTGATAAACTGCTCACTGAGTCTCTGAAGAACAATATCCCCGCAAGTGGACTGCATCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAAgtgagttagcagtcacttggtcatcacagatggtaaggcctgccacacaa #### Pik3ap1_ID8166_3 --> 2 - 0 Original Alignment atTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagatTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat Alignment from CESAR atTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagatTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat Alignment from Spaln_aa2Genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagATTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat Alignment from Spaln_nt2Genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagATTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat Alignment from Pairagon ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagATTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat Alignment from Exonerate_protein2genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagATTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat Alignment from Exonerate_coding2genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagATTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat Alignment from GeneWise ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctcttctttcccctgctcccattttctccatcttatcttgcaatagATTCTGGCTGTGACTCAGTAACTGACACGGAGCCTGAGGATGAGAGAGAGCTCCCCTTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCACCTGGGAACCTAATGGTTGTTCAGCCAGATCGCATTCGCTGTGGGgtaccgctggttatcttgcacaccatcagggcatcgactttcccagtcat #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggccccaccctgaactcccaagccctctgtctgattattttccaggtGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATggtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggccccaccctgaactcccaagccctctgtctgattattttccaggtGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATggtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from GeneWise -------------------------------------------------GGCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG GACAGGGCCCCACCCTGAACTCCCAAGCCCTCTGTCTGATTATTTTCCAGGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat #### Pitpnm1_ID318_15 --> 2 - 1 Original Alignment ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagctGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from CESAR ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagctGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Spaln_aa2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Spaln_nt2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Pairagon CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Exonerate_protein2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from Exonerate_coding2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg Alignment from GeneWise CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA gcgaagaggcatgagggttgtttgatcctactccctctcctccaccacagCTGAGACTTTCCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTACCCTCCACACCCTCCTCAACCAGTGACAGTGCCTTCTGGAAGGGCAGTGAGCTAGGCAACGAACCAGCCTCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgggtctgtcagcactgccttctactgtgttagcctacctgcaagcgtg #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTGGTCACACTCACTGGAGAAGAGgtgaggagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTGGTCACACTCACTGGAGAAGAGgtccttagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTGAGGAGAATTTTCTGTTTTACAgGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTGAGGAGAATTTTCTGTTTTACAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGGTGAGGAGAATTTTCTGTTTTACAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGgtgaggagaattttctgttttacaggttgatGTC------TATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGgtgaggagaattttctgttttacaggttgatGTC------TATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTGGTCACACTCACTGGAGAAGAGgtgaggagaattttctgttttacagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCTGGCCGTCTCACCTTCCCAGTGTCGTCAGAACATGCACTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgagtaggtcagcacgtatctcggctcctgtgaaactgggcactaccaa #### Pkd2l1_ID8955_13 --> 0 - 2 Original Alignment GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACatgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from CESAR GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACatgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Spaln_aa2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGAGGCT------GCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Spaln_nt2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACT------GGAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Pairagon GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACT------GGAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Exonerate_protein2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Exonerate_coding2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from GeneWise GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac #### Pla2g16_ID2178_2 --> 0 - 1 Original Alignment CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcagCCAGAACCCAAACCAGGTGACCTG---AAGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAagtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga Alignment from CESAR CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcagCCAGAACCCAAACCAGGTGACCTG---AAGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAagtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga Alignment from Spaln_aa2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcagCCAGAACCCAAACCAGGTGACCTG---AAGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAAgtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga Alignment from Spaln_nt2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcagCCAGAACCCAAACCAGGTGACCTGA---AGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAAgtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga Alignment from Pairagon CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcagCCAGAACCCAAACCAGGTGACCTGA---AGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAAgtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga Alignment from Exonerate_protein2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcagCCAGAACCCAAACCAGGTGACCTG---AAGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAAgtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga Alignment from Exonerate_coding2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcagCCAGAACCCAAACCAGGTGACCTG---AAGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAAgtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga Alignment from GeneWise CTAGCACCCATACCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA ctggtgccgaggattcacaccatcactacgttttcatttgggtcttgcag------------CCAGAACCCAAACCAGGTGACCTG---AAGATTTTCTGCCCTATGTATAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAAgtaagtaaaccagtgtgtccactgttctgaggaactgataaagtatttga #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaatggctacactaatctgactctgggttcctgcttcccagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaatggctacactaatctgactctgggttcctgcttcccagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaatggctacactaatctgactctgggttcctgcttcccagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaatggctacactaatctgactctgggttcctgcttcccagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaatggctacactaatctgactctgggttcctgcttcccagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaatggctacactaatctgactctgggttcctgcttcccagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaatggctacactaatctgactctgggttcctgcttcccagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata Alignment from GeneWise -------------GGGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT GGCCCCCCCCAATGGCTACACTAATCTGACTCTGGGTTCCTGCTTCCCAGAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAGCTTCGGAGCCGACAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTAGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCAAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtatgtgtccttcaacctgctgtaacttatggtgtgtacttactggaata #### Plcb3_ID1907_24 --> 2 - 1 Original Alignment ggCAGCGAGATGATTTGATTGCCAGCATCCTCTCTg gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagggCAACGAGATGATTTGATTGCAAGCACCCTTTCTggtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc Alignment from CESAR ggCAGCGAGATGATTTGATTGCCAGCATCCTCTCTg gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagggCAACGAGATGATTTGATTGCAAGCACCCTTTCTggtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc Alignment from Spaln_aa2Genome GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTG gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagGGCAACGAGATGATTTGATTGCAAGCACCCTTTCTGgtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc Alignment from Spaln_nt2Genome GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTG gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagGGCAACGAGATGATTTGATTGCAAGCACCCTTTCTGgtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc Alignment from Pairagon GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTG gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagGGCAACGAGATGATTTGATTGCAAGCACCCTTTCTGgtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc Alignment from Exonerate_protein2genome GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTG gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagGGCAACGAGATGATTTGATTGCAAGCACCCTTTCTGgtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc Alignment from Exonerate_coding2genome GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTG gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagGGCAACGAGATGATTTGATTGCAAGCACCCTTTCTGgtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc Alignment from GeneWise GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTG gagccacccacactggattgcttctcttcatgcatgcctttcgtttccagGGCAACGAGATGATTTGATTGCAAGCACCCTTTCTGgtgagtggcattccgatatggggtagggcctcctggccagtcattctgcc #### Plcb3_ID1909_22 --> 2 - 0 Original Alignment acTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagacTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag Alignment from CESAR acTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagacTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag Alignment from Spaln_aa2Genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagACTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag Alignment from Spaln_nt2Genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagACTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag Alignment from Pairagon ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagACTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag Alignment from Exonerate_protein2genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagACTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag Alignment from Exonerate_coding2genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagACTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag Alignment from GeneWise ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG aaatgaggcctgtgtgctggcctaaaggttattattattttgaaccttagACTATGCAGAGGCCTTGATTAACCCTATCAAGCACGTAAGCCTGATGGACCAGCGGGCCAAACAACTAGCTGCTCTCATTGGGGAGAGTGAGgtaggaagggaggactaagtctagtctgatagtgaagagctcttccgcag #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAggtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAggtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCA--------------------------------------------------- ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGGTAAGGCCGGGGGCTCCGGCACTAAAGCAGCTTCAAAGTCTTGGCAGAGA #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGGgtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGGgtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Exonerate_protein2genome ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcattctgaagatgttctcggcggacaagaagcgggtagagactgcgctggagtcctgtggcctcaacttaaaccgggtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Exonerate_coding2genome ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcattctgaagatgttctcggcggacaagaagcgggtagagactgcgctggagtcctgtggcctcaacttaaaccgggtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGT------TTTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGT------TTTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Exonerate_protein2genome gctcctccccttcttgttcattctatactggatctgtcatgtatatataggaccctaagattcgagaagtttttgggggccctgatacacggctggaggagagattgatgacagtggtggctgggccagatttagtaactaccacattcttgaacttcatggctgtgcaggatggcacagtcaaggtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Exonerate_coding2genome gctcctccccttcttgttcattctatactggatctgtcatgtatatataggaccctaagattcgagaagtttttgggggccctgatacacggctggaggagagattgatgacagtggtggctgggccagatttagtaactaccacattcttgaacttcatggctgtgcaggatggcacagtcaaggtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_protein2genome aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaaggaggtggacacactggatatcagctccatcagagacacaagaacaggtcgttatgcccgcctgcccaaagtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_coding2genome aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaaggaggtggacacactggatatcagctccatcagagacacaagaacaggtcgttatgcccgcctgcccaaagtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat #### Plcb3_ID1929_2 --> 0 - 0 Original Alignment GAGGCCTCCAGTCGGAACCTGGTGACCCTGCGTGTGGACCCTAATGGCTTCTTCTTGTACTGGACAGGACCCAACATG caagctttctccagccttcacacctggctacacccacaattttggcccagGAAGCTTCAAGTTGGAACCTGGTGACACTGCGAGTGGACCCTAATGGCTTCTTTTTGTACTGGACAGGACCCAACATGgtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta Alignment from CESAR GAGGCCTCCAGTCGGAACCTGGTGACCCTGCGTGTGGACCCTAATGGCTTCTTCTTGTACTGGACAGGACCCAACATG caagctttctccagccttcacacctggctacacccacaattttggcccagGAAGCTTCAAGTTGGAACCTGGTGACACTGCGAGTGGACCCTAATGGCTTCTTTTTGTACTGGACAGGACCCAACATGgtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta Alignment from Spaln_aa2Genome GAGGCCTCCAGTCGGAACCTGGTGACCCTGCGTGTGGACCCTAATGGCTTCTTCTTGTACTGGACAGGACCCAACATG caagctttctccagccttcacacctggctacacccacaattttggcccagGAAGCTTCAAGTTGGAACCTGGTGACACTGCGAGTGGACCCTAATGGCTTCTTTTTGTACTGGACAGGACCCAACATGgtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta Alignment from Spaln_nt2Genome GAGGCCTCCAGTCGGAACCTGGTGACCCTGCGTGTGGACCCTAATGGCTTCTTCTTGTACTGGACAGGACCCAACATG caagctttctccagccttcacacctggctacacccacaattttggcccagGAAGCTTCAAGTTGGAACCTGGTGACACTGCGAGTGGACCCTAATGGCTTCTTTTTGTACTGGACAGGACCCAACATGgtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta Alignment from Pairagon GAGGCCTCCAGTCGGAACCTGGTGACCCTGCGTGTGGACCCTAATGGCTTCTTCTTGTACTGGACAGGACCCAACATG caagctttctccagccttcacacctggctacacccacaattttggcccagGAAGCTTCAAGTTGGAACCTGGTGACACTGCGAGTGGACCCTAATGGCTTCTTTTTGTACTGGACAGGACCCAACATGgtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta Alignment from Exonerate_protein2genome caagctttctccagccttcacacctggctacacccacaattttggcccaggaagcttcaagttggaacctggtgacactgcgagtggaccctaatggcttctttttgtactggacaggacccaacatggtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta Alignment from Exonerate_coding2genome caagctttctccagccttcacacctggctacacccacaattttggcccaggaagcttcaagttggaacctggtgacactgcgagtggaccctaatggcttctttttgtactggacaggacccaacatggtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta Alignment from GeneWise GAGGCCTCCAGTCGGAACCTGGTGACCCTGCGTGTGGACCCTAATGGCTTCTTCTTGTACTGGACAGGACCCAACATG caagctttctccagccttcacacctggctacacccacaattttggcccagGAAGCTTCAAGTTGGAACCTGGTGACACTGCGAGTGGACCCTAATGGCTTCTTTTTGTACTGGACAGGACCCAACATGgtgggtgcagtgccgatgctattggttagttcctaggtttctctagctta #### Plce1_ID7607_2 --> 0 - 1 Original Alignment ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAggtaagttttggaatatcattttcagcttctcagatttacctttagagaac Alignment from CESAR ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAggtaagttttggaatatcattttcagcttctcagatttacctttagagaac Alignment from Spaln_aa2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaagttttggaatatcattttcagcttctcagatttacctttagagaac Alignment from Spaln_nt2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaagttttggaatatcattttcagcttctcagatttacctttagagaac Alignment from Pairagon ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaagttttggaatatcattttcagcttctcagatttacctttagagaac Alignment from Exonerate_protein2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaagttttggaatatcattttcagcttctcagatttacctttagagaac Alignment from Exonerate_coding2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaagttttggaatatcattttcagcttctcagatttacctttagagaac Alignment from GeneWise ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG atttcctaagaaattagattaacatgtcgatattgtctttcctcctgaagATCTACAGCGCTGTGAGAAGAGGGGAAGAAATAGAAGATACAGTTGGATCTCTGCTACATTGTTCCACACAGCTCCCAAACTCTGAAACAGCCCATGGAAGGATCAAAGATGGTCCCTGCTTAAAGCGGTGTGTACGAGAAACCGAATGTGAATTCCGTGCTACCCTACAAAGAACACCCATAGCTCAGTACATCACAAGTTCTCTTCTAGAGGCAACTACATCTTTAGGTGCCAGAAGTGGCCTTCTCAGTTCCTTTGGAGGCTCCACTGGAAGAATTATGCTGAAAGgtaagttttggaatatcattttcagcttctcagatttacctttagagaac #### Plce1_ID7619_6 --> 0 - 2 Original Alignment TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGcagtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg Alignment from CESAR TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGcagtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg Alignment from Spaln_aa2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGCAgtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg Alignment from Spaln_nt2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGCAgtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg Alignment from Pairagon TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGCAgtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg Alignment from Exonerate_protein2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGCAgtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg Alignment from Exonerate_coding2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGCAgtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg Alignment from GeneWise TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aataagtcacatcagctgcaacattgaatatcaaatatttatattcacagTTTGTAGCTGATTACAGTGGACAAGATACCATTTTACAACGAGTGGGACAGATTGGCTTAAAAAATTCAGAGAAGGAGCTCACAGTTAACACTATCTTACAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAAGAAGACAGTGCTAGTGAAGGAACTGGTTCTAGGAAAAATTCCCTGAAGGACAAAGCCCGATGGCAgtaacacacaacatcagcaagtttgtaggcaggtgagcccttggtttctg #### Plce1_ID7621_7 --> 1 - 0 Original Alignment gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcaggTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCT---GAGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGT---GTGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt Alignment from CESAR gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcaggTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCT---GAGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGT---GTGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt Alignment from Spaln_aa2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcagGTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCT---GAGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGT---GTGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt Alignment from Spaln_nt2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcagGTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCTG---AGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGTG---TGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt Alignment from Pairagon GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcagGTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCTG---AGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGTG---TGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt Alignment from Exonerate_protein2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcagGTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCT---GAGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGT---GTGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt Alignment from Exonerate_coding2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcagGTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCT---GAGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGT---GTGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt Alignment from GeneWise GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG attctaagacaaaggacttatcttttcagaagcgtttctcattccctcagGTTTATCATT---GAGTTGCTGGATTCAGAAAATGACATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAAGCCTTTGACCATGGGACAGAACTTATCCCATGGTATGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTATGACCAGGATACACACCTTTCAGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTAACCTGGATGAAGTCTCCCACCTCATCCCCAGCTGGTGCAAGGCCCAAGCTTGGAGTGCTTAGTAACATGGCGGAACCT---GAGTTCCCATCCCCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTGTGTGTCCAGAATGAGCTTAGTAGCATGCTTCTATCGGAGACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTCAGT---GTGCTGGATCTCACAACCGCTGTAAGAAAAATAAGGAGATTCCCTGACCAACGTCTACAGTGGCTTCGGAAACAGTACGTCAGCCTCTACCAGgtgggtggtggatccagccctcacccttaggatacacaatcctcatcctt #### Plce1_ID7622_8 --> 0 - 0 Original Alignment GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt Alignment from CESAR GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt Alignment from Spaln_aa2Genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt Alignment from Spaln_nt2Genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt Alignment from Pairagon GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt Alignment from Exonerate_protein2genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt Alignment from Exonerate_coding2genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt Alignment from GeneWise GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG aacctcctggttgctgtttgcttctgttatatgaccttttccctctgtagGAGGATGGTCGGTACGAAGGTGCGACCCTGGCACATGCTGCGGAGCTGTTTGGTGGTAGGAGGTGGAGCACTAGAAACCCGAGCCCTGGAATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCAGAGGAACAATACCCTAGGCATAAGCACCACCAAGAAGAAAAAGAAAATGCTCATAAGGgtaagttaaattaaacatcatacccaaccaatctcctactataggattgt #### Plce1_ID7627_13 --> 2 - 0 Original Alignment atTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagatTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc Alignment from CESAR atTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagatTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc Alignment from Spaln_aa2Genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagATTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc Alignment from Spaln_nt2Genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagATTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc Alignment from Pairagon ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagATTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc Alignment from Exonerate_protein2genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagATTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc Alignment from Exonerate_coding2genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagATTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc Alignment from GeneWise ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tgctcaatcagagatgcttctggagagattgagcataattgtttttacagATTTGCTGACTAAAAATGTCTCTGATCTGGGGCTGTTCATTAAAAGTAAACAACAGCTTTCTGACAACCAGAGGCAGATGTCTGATGCTATCGCTGCTGCAAGCATCGTGACGAATGGTACTGGGATTGAAAGCACATCCCTCGGCATATTTGGTGTTGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGACCATTGCACATATGATGAAATTCTGAGCATCATCCAGgtaagtcatatatagcatgtatgacatatatgtatggcatatatggcatc #### Plce1_ID7634_17 --> 0 - 0 Original Alignment GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac Alignment from CESAR GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac Alignment from Spaln_aa2Genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac Alignment from Spaln_nt2Genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac Alignment from Pairagon GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac Alignment from Exonerate_protein2genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac Alignment from Exonerate_coding2genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac Alignment from GeneWise GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ttgtgatgccaacagatgccacaatctgcccactgcccttctccccctagGAAGTGGTGGAAGCCATCGATCGCAGTGCTTTTGTAACATCAGACCTACCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttccacctaagagactattatctcttagttgttattggtaccaac #### Plce1_ID7638_21 --> 0 - 1 Original Alignment GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAg atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAggtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg Alignment from CESAR GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAg atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAggtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg Alignment from Spaln_aa2Genome GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAG atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAGgtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg Alignment from Spaln_nt2Genome GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAG atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAGgtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg Alignment from Pairagon GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAG atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAGgtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg Alignment from Exonerate_protein2genome GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAG atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAGgtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg Alignment from Exonerate_coding2genome GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAG atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAGgtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg Alignment from GeneWise GTGTATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAGAACAAAAAGGAAAGCAGGCAGATTGCACCGGAGCTTTCTGACCTCGTCATTTATTGCCAGGCAGTAAAATTTCCAG atagagagagtgctttggggatctggtagtgttctgtctcttactttcagGTATATGACATGGAACTGGGAGAGGAGTTTTACCTTCCTCAAAACAAAAAAGAAACCAGGCAGATTGGACCAGAGCTTTGTGACCTTGTCATTTACTGCCAGGCAGTAAAATTTCCAGgtaggaatagtaaatagtgtatgattggagaagctagaagtggtctatgg #### Plce1_ID7642_24 --> 2 - 0 Original Alignment acCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagacCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca Alignment from CESAR acCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagacCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca Alignment from Spaln_aa2Genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagACCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca Alignment from Spaln_nt2Genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagACCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca Alignment from Pairagon ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagACCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca Alignment from Exonerate_protein2genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagACCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca Alignment from Exonerate_coding2genome ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagACCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca Alignment from GeneWise ACCTTCCTTTACATTTAAACGCCGCCATGTTTGAGGCGAATGGTGGGTGTGGTTATGTTTTGAAGCCCCCTGTCCTGTGGGATAAAAGCTGTCCCATGTACCAGAAGTTTTCTCCACTGGAAAGAGACCTAGACAACCTGGATCCTGCTATCTATTCTTTAACT gtcccttctccattaaataatatgtagtcatccccaccctcctcctccagACCTTCCTCTACATCTAAATGCTGCTATGTTTGAGGCGAATGGCGGGTGTGGTTATGTCTTGAAACCCCCTGTCTTGTGGGACAAAAGCTGTCCGATGTACCAGAAGTTTTCTCCTCTGGGAAGAGACCTAGATAACCTGGATCCTGCAATCTATTCTTTAACTgtgaggacaaccacatggtctaagcaatgcaatatctactgattttggca #### Plce1_ID7647_28 --> 0 - 0 Original Alignment GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc Alignment from CESAR GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc Alignment from Spaln_aa2Genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc Alignment from Spaln_nt2Genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc Alignment from Pairagon GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc Alignment from Exonerate_protein2genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc Alignment from Exonerate_coding2genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc Alignment from GeneWise GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tgtgccactctgcacagatgttctctcatcacagctgtgtttcatcgtagGTTCTGGCAGTTGACCAAGACACTAAATGCACTGCCACAGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCTAAAGAAAAGAATGAATGCAGGAAACAACCATTTCAGAGAGCTGTGAGTCCAGAAAAAGATATTGTGCAGATTTTAAATAGTTGGTTCCCAGAAGAAGGATACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAAgtgagtatatcctggtttgcgccgggtgtgtggctgcctgacatgtcagc #### Plce1_ID7649_30 --> 0 - 0 Original Alignment ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG agatacataggtgctggctattgggcttctgttgttctttgttctctcagACCATATGCAAGGCCAAGTACTCATATAGCATCCTGAACAACCCCAATCCATGTGACTATGTGCTTTTGGAAGAGGTACTAAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCACAGAGGATCCTTCTAGACCAAGAA---GTATTTCAAGCGCAAAGCAAGTGGAAGGGTGCAGGAAGGTTCATACTTAAAATACAGGAGCACGTGCAGgtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc Alignment from CESAR ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG agatacataggtgctggctattgggcttctgttgttctttgttctctcagACCATATGCAAGGCCAAGTACTCATATAGCATCCTGAACAACCCCAATCCATGTGACTATGTGCTTTTGGAAGAGGTACTAAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCACAGAGGATCCTTCTAGACCAAGAA---GTATTTCAAGCGCAAAGCAAGTGGAAGGGTGCAGGAAGGTTCATACTTAAAATACAGGAGCACGTGCAGgtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc Alignment from Spaln_aa2Genome agatacataggtgctggctattgggcttctgttgttctttgttctctcagaccatatgcaaggccaagtactcatatagcatcctgaacaaccccaatccatgtgactatgtgcttttggaagaggtactaaaagatgcagctaataagaagtcttctaccccaaagtcctcacagaggatccttctagaccaagaagtatttcaagcgcaaagcaagtggaagggtgcaggaaggttcatacttaaaatacaggagcacgtgcaggtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc Alignment from Spaln_nt2Genome agatacataggtgctggctattgggcttctgttgttctttgttctctcagaccatatgcaaggccaagtactcatatagcatcctgaacaaccccaatccatgtgactatgtgcttttggaagaggtactaaaagatgcagctaataagaagtcttctaccccaaagtcctcacagaggatccttctagaccaagaagtatttcaagcgcaaagcaagtggaagggtgcaggaaggttcatacttaaaatacaggagcacgtgcaggtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc Alignment from Pairagon ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG agatacataggtgctggctattgggcttctgttgttctttgttctctcagACCATATGCAAGGCCAAGTACTCATATAGCATCCTGAACAACCCCAATCCATGTGACTATGTGCTTTTGGAAGAGGTACTAAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCACAGAGGATCCTTCTAGACCAAGAA---GTATTTCAAGCGCAAAGCAAGTGGAAGGGTGCAGGAAGGTTCATACTTAAAATACAGGAGCACGTGCAGgtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc Alignment from Exonerate_protein2genome ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG agatacataggtgctggctattgggcttctgttgttctttgttctctcagACCATATGCAAGGCCAAGTACTCATATAGCATCCTGAACAACCCCAATCCATGTGACTATGTGCTTTTGGAAGAGGTACTAAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCACAGAGGATCCTTCTAGACCAAGAA---GTATTTCAAGCGCAAAGCAAGTGGAAGGGTGCAGGAAGGTTCATACTTAAAATACAGGAGCACGTGCAGgtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc Alignment from Exonerate_coding2genome ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG agatacataggtgctggctattgggcttctgttgttctttgttctctcagACCATATGCAAGGCCAAGTACTCATATAGCATCCTGAACAACCCCAATCCATGTGACTATGTGCTTTTGGAAGAGGTACTAAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCACAGAGGATCCTTCTAGACCAAGAA---GTATTTCAAGCGCAAAGCAAGTGGAAGGGTGCAGGAAGGTTCATACTTAAAATACAGGAGCACGTGCAGgtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc Alignment from GeneWise ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG agatacataggtgctggctattgggcttctgttgttctttgttctctcagACCATATGCAAGGCCAAGTACTCATATAGCATCCTGAACAACCCCAATCCATGTGACTATGTGCTTTTGGAAGAGGTACTAAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCACAGAGGATCCTTCTAGACCAAGAA---GTATTTCAAGCGCAAAGCAAGTGGAAGGGTGCAGGAAGGTTCATACTTAAAATACAGGAGCACGTGCAGgtatgcgtgtcccacattgttgtcttaaaggaccttgagagtcagccagc #### Plekhs1_ID12097_2 --> 2 - 0 Original Alignment gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagaatccatcctctcctttctttccaggcAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt Alignment from CESAR gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagaatccatcctctcctttctttccaggcAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt Alignment from Spaln_aa2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagaatccatcctctcctttctttccagGCAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt Alignment from Spaln_nt2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagaatccatcctctcctttctttccagGCAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt Alignment from Pairagon GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagaatccatcctctcctttctttccagGCAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt Alignment from Exonerate_protein2genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagaatccatcctctcctttctttccagGCAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt Alignment from Exonerate_coding2genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagaatccatcctctcctttctttccagGCAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt Alignment from GeneWise GAAGCCAGACCTCCAAAAGGCCCAGGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaatttatgatgaaactgcaaacagAATCCATCCTCTCCTTTCTTTCCAGGCAAACAATTTACATTTGATTATGAAAATGAAGTCGATAAACGGGATTACTTCATTAAGTCACCACCCCCTCAGCTCTTCTTCTCTGGGgtacctaattacagtggctttactaacctccaactggctgtataggcatt #### Plekhs1_ID12103_8 --> 0 - 2 Original Alignment TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCtg tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCtggtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag Alignment from CESAR TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCtg tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCtggtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag Alignment from Spaln_aa2Genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag Alignment from Spaln_nt2Genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag Alignment from Pairagon TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag Alignment from Exonerate_protein2genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag Alignment from Exonerate_coding2genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag Alignment from GeneWise TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG tggtcagtcacagacctgaaatcctcaccttctataatttctcattacagTTAGAGAATATAGCGAGACCTAATGATTCTGGTGACTCTATCAAATCCAATAGTCCTGACCAATGTTTCAAAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtgagcactactgtgcattcttcacatttttgatgtcttttaggatccag #### Plekhs1_ID12105_10 --> 1 - 2 Original Alignment cAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCtg agctattagtatggtctaatgtgacctactggatcttttttgcattacagcAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCtggtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg Alignment from CESAR cAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCtg agctattagtatggtctaatgtgacctactggatcttttttgcattacagcAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCtggtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg Alignment from Spaln_aa2Genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctattagtatggtctaatgtgacctactggatcttttttgcattacagCAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCTGgtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg Alignment from Spaln_nt2Genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctattagtatggtctaatgtgacctactggatcttttttgcattacagCAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCTGgtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg Alignment from Pairagon CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctattagtatggtctaatgtgacctactggatcttttttgcattacagCAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCTGgtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg Alignment from Exonerate_protein2genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctattagtatggtctaatgtgacctactggatcttttttgcattacagCAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCTGgtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg Alignment from Exonerate_coding2genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctattagtatggtctaatgtgacctactggatcttttttgcattacagCAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCTGgtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg Alignment from GeneWise CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctattagtatggtctaatgtgacctactggatcttttttgcattacagCAATATTCCTGACGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTCTCTCCTCGGGACGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATCTGgtaagtttgagctgtggagggaaaatgagcaggagttaaaaatagagggg #### Pnlip_ID12748_7 --> 2 - 1 Original Alignment gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from CESAR gaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_aa2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_nt2Genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Pairagon GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_protein2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_coding2genome GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from GeneWise GATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat #### Pnliprp1_ID12766_3 --> 0 - 0 Original Alignment ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa Alignment from CESAR ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa Alignment from Spaln_aa2Genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa Alignment from Spaln_nt2Genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa Alignment from Pairagon ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa Alignment from Exonerate_protein2genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa Alignment from Exonerate_coding2genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa Alignment from GeneWise ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgctatagggagcgggtggacagaacatcattgttcgtgtctttcagACTCTTCAGTTTTCTGAGTCGTCAACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAAACATGTTTAATTGTCCATTGCTTCATAGGCAAAGGAGAAGAAAACTGGGTGGTAGGCATGTGCAAGgtgtgtaatatctttttgcaactcaatttgttctcttcaccagaccacaa #### Pnliprp1_ID12767_4 --> 0 - 0 Original Alignment AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt Alignment from CESAR AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt Alignment from Spaln_aa2Genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt Alignment from Spaln_nt2Genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt Alignment from Pairagon AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt Alignment from Exonerate_protein2genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt Alignment from Exonerate_coding2genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt Alignment from GeneWise AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG ccctggcggaagatgttccccatggcaaattatttttgttacatatacagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtaaggggtgtagtatggaggtggtgtgctaaagtgaatctatggattgt #### Pnliprp1_ID12771_8 --> 2 - 0 Original Alignment gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagggACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc Alignment from CESAR gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagggACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc Alignment from Spaln_aa2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagGGACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc Alignment from Spaln_nt2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagGGACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc Alignment from Pairagon GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagGGACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc Alignment from Exonerate_protein2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagGGACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc Alignment from Exonerate_coding2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagGGACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc Alignment from GeneWise GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT cacggcctggcgtaaatcacctgcacagagcccgggtttcctctctgcagGGACACGGGACTTTGTGGCTTGTAACCACCTTAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGGGTTCGCTGCATATCCCTGTGCTTCCTACCGGGACTTTGAGTCTgtgagtatctattcttgggaagatcagggagaaccaacacttagacatcc #### Pnliprp2_ID12779_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcaggcAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct Alignment from CESAR ggAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcaggcAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcagGCAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcagGCAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct Alignment from Pairagon GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcagGCAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcagGCAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcagGCAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct Alignment from GeneWise GGAAAGAGGTTTGCTATGGACACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAA atattatgcctgtcctttttgtggtttgttttcctctctttgttcttcagGCAAAGAAGTTTGCTATGGACACCTTGGATGCTTCTTGAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCACCAGAGGACATTGATACCCGTTTCCTTCTGTACACAAATAAAAATCCAAACAACTACCAAgtaatcgttagaattcttgcctctcccagagtcataagccttgagcatct #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagcTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAaggtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagcTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAaggtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from Exonerate_coding2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gattagtaacctggtcttatccccccccaaagaagtgttctccttttcagCTCTTCAGGGACACCAGACAGATTCAGCAGAGTCCTTAAGCATATTCTGACACAGAGAAGgtaagtgatgtccttccaaccccaagaggaatggaccatatttattagca #### Pola2_ID1331_10 --> 0 - 1 Original Alignment GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagGGCGTACCACTTCCATTCTATCAGCCCACTGAAGAGAAAGGAggtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa Alignment from CESAR GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagGGCGTACCACTTCCATTCTATCAGCCCACTGAAGAGAAAGGAggtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa Alignment from Spaln_aa2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagGGCGTACCACTTCCATTCTATCAGCCCACTGAAGAGAAAGGAGgtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa Alignment from Spaln_nt2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagGGCGTACCACTTCCATTCTATCAGCCCACTGAAGAGAAAGGAGgtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa Alignment from Pairagon GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagGGCGTACCACTTCCATTCTATCAGCCCACTGAAGAGAAAGGAGgtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa Alignment from Exonerate_protein2genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagGGCGTACCACTTCCATTCTATCAGCCCACTGAAGAGAAAGGAGgtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa Alignment from Exonerate_coding2genome agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagggcgtaccacttccattctatcagcccactgaagagaaaggaggtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa Alignment from GeneWise GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agaaggaagcatgtgcggtgggtgtggccttcccactccatcatctctagGGCGTACCACTTCCATTCTATCAGCCCACTGAAGAGAAAGGAGgtaggaattgtttcaaaattttctttgctaacgatgggggcagtatacaa #### Pola2_ID1334_7 --> 2 - 0 Original Alignment ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagttCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac Alignment from CESAR ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagttCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac Alignment from Spaln_aa2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagTTCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac Alignment from Spaln_nt2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagTTCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac Alignment from Pairagon TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagTTCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac Alignment from Exonerate_protein2genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagTTCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac Alignment from Exonerate_coding2genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagTTCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac Alignment from GeneWise TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gtcgcagtgagctaacctttcttaccaactgtttttctctggtgctgaagTTCTGACCAGTAAAATTGAAGAGCTTGGGAGTGAGCTAAAGGAGCATCACAAGATTGAGGCCTTTACCCCTATTCTGGGTCCAGCACAAgtgagtcgagggcacatctgggtgtaatgagaaaaggcttgtgcccgcac #### Polr2g_ID2377_6 --> 0 - 0 Original Alignment GACATTGTGATTCAGCAG---GACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT accgataccaagcctgagtctggctgactcactccctgttattggagaagGACATAGTGATTCAGCTGGATGATGATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAATGACGTTgtatgtcttgctaggcttctgttcttgcctatatgaaggcacagatcaga Alignment from CESAR GACATTGTGATTCAGCAGGACGAT---GAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT accgataccaagcctgagtctggctgactcactccctgttattggagaagGACATAGTGATTCAGCTGGATGATGATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAATGACGTTgtatgtcttgctaggcttctgttcttgcctatatgaaggcacagatcaga Alignment from Spaln_aa2Genome GACATTGTGATTCAG---CAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT accgataccaagcctgagtctggctgactcactccctgttattggagaagGACATAGTGATTCAGCTGGATGATGATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAATGACGTTgtatgtcttgctaggcttctgttcttgcctatatgaaggcacagatcaga Alignment from Spaln_nt2Genome GACATTGTGATTCAGCAG---GACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT accgataccaagcctgagtctggctgactcactccctgttattggagaagGACATAGTGATTCAGCTGGATGATGATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAATGACGTTgtatgtcttgctaggcttctgttcttgcctatatgaaggcacagatcaga Alignment from Pairagon ------------------------------------------------AGGACATTGTGATTCAGCAG---GACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ACCGATACCAAGCCTGAGTCTGGCTGACTCACTCCCTGTTATTGGAGAAGGACATAGTGATTCAGCTGGATGATGATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAATGACGTTgtatgtcttgctaggcttctgttcttgcctatatgaaggcacagatcaga Alignment from Exonerate_protein2genome GACATTGTGATTCAG---CAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT accgataccaagcctgagtctggctgactcactccctgttattggagaagGACATAGTGATTCAGCTGGATGATGATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAATGACGTTgtatgtcttgctaggcttctgttcttgcctatatgaaggcacagatcaga Alignment from Exonerate_coding2genome accgataccaagcctgagtctggctgactcactccctgttattggagaaggacatagtgattcagctggatgatgatgagatacggctaaagattgtagggacacatgtagataaaaatgacgttgtatgtcttgctaggcttctgttcttgcctatatgaaggcacagatcaga Alignment from GeneWise GACATTGTGATTCAG---CAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATTTTTGCCATTGGCTCTCTGATG accgataccaagcctgagtctggctgactcactccctgttattggagaagGACATAGTGATTCAGCTGGATGATGATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAATGACGTTGTATGTCTTGCTAGGCTTCTGttcttgcctatatgaaggcacagatcaga #### Polr2g_ID2379_4 --> 0 - 0 Original Alignment GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacgatgctattgtgtttctgcagTCC Alignment from CESAR GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacagtgtctcctctgtttctcagTCC Alignment from Spaln_aa2Genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacgatgctattgtgtttctgcagTCC Alignment from Spaln_nt2Genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacgatgctattgtgtttctgcagTCC Alignment from Pairagon GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacgatgctattgtgtttctgcagTCC Alignment from Exonerate_protein2genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacgatgctattgtgtttctgcagTCC Alignment from Exonerate_coding2genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacgatgctattgtgtttctgcagTCC Alignment from GeneWise GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT TCC taaaaatgctctaaagcattaaaagaaaccaatgctcccctctcctccagGTTGGTCTGTTTACAGAAATTGGGCCTATGTCTTGCTTTATCTCTCGACATgtaagtctggggttcctggaagtcacgatgctattgtgtttctgcagTCC #### Polr2g_ID2380_3 --> 1 - 0 Original Alignment aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagaTATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag Alignment from CESAR aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagaTATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag Alignment from Spaln_aa2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag Alignment from Spaln_nt2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag Alignment from Pairagon ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag Alignment from Exonerate_protein2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag Alignment from Exonerate_coding2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag Alignment from GeneWise ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG aggcttttgagggatgcttcaaatggctgtccccgttctttatattgtagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtgagcgtatttttcatggaaagggattgtctgacatgcagcatgcagag #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca Alignment from Pairagon GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca Alignment from Exonerate_protein2genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca Alignment from Exonerate_coding2genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca Alignment from GeneWise GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgctcaagaagccatactcatctttatctctccccagCAACTATTAGTTGACTGTTATAAACCTACTGAGgtgagttactctccttcccctcaggccttgggtaagtgtgcacacgggca #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggtttctgtgaagaggtgatatctctgtcttcaatatcctcaacagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGCTCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCCCAGAgtgagtggcactgggagtagggaaatgtacagtggtagatcaggggtgtg #### Ppp6r3_ID78_15 --> 1 - 0 Original Alignment tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagccatctatgatgacgtgcgctctcttctgcagtGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg Alignment from CESAR tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagccatctatgatgacgtgcgctctcttctgcagtGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg Alignment from Spaln_aa2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagccatctatgatgacgtgcgctctcttctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg Alignment from Spaln_nt2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagccatctatgatgacgtgcgctctcttctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg Alignment from Pairagon TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagccatctatgatgacgtgcgctctcttctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg Alignment from Exonerate_protein2genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagccatctatgatgacgtgcgctctcttctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg Alignment from Exonerate_coding2genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagccatctatgatgacgtgcgctctcttctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg Alignment from GeneWise ------------------------------------TCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT taatagagcaccttatagCCATCTATGATGACGTGCGCTCTCTTCTGCAGTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagaataaatacttttcattatgttttgtcatattaagtgttatattg #### Ppp6r3_ID82_12 --> 2 - 0 Original Alignment atCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagatCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGT------ACTTTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc Alignment from CESAR atCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagatCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGTACT------TTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc Alignment from Spaln_aa2Genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagATCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGT------ACTTTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc Alignment from Spaln_nt2Genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagATCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGTA------CTTTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc Alignment from Pairagon ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagATCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGTA------CTTTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc Alignment from Exonerate_protein2genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagATCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGTACT------TTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc Alignment from Exonerate_coding2genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagATCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGTACT------TTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc Alignment from GeneWise ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA tctactttatgtgctttattactttttatctctgcccttctccaccccagATCTACCTGATGAAGTCAGGGAGTGGTGGGAGACATTCTGTACT------TTGGGAGAAACGAACAAGAGGAACACAGTAGATCTAgtaagatcctatgtcctgtttctggaacttgtggtgctgctgtcccttgc #### Ppp6r3_ID87_7 --> 1 - 0 Original Alignment gTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccaggTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta Alignment from CESAR gTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccaggTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta Alignment from Spaln_aa2Genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta Alignment from Spaln_nt2Genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta Alignment from Pairagon GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta Alignment from Exonerate_protein2genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta Alignment from Exonerate_coding2genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta Alignment from GeneWise GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaagtggttgcgtcttttcccctctcctcccagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCCTTCCATGAACTCCTTCTTGAACCACCCAAGgtaagtttgctgcagcatgttagctgtcactgtgcagtttcattgtttta #### Ppp6r3_ID93_2 --> 1 - 0 Original Alignment gTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacaggTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg Alignment from CESAR gTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacaggTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg Alignment from Spaln_aa2Genome GTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacagGTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg Alignment from Spaln_nt2Genome GTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacagGTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg Alignment from Pairagon GTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacagGTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg Alignment from Exonerate_protein2genome GTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacagGTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg Alignment from Exonerate_coding2genome GTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacagGTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg Alignment from GeneWise GTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAG tcccctcaattatctcaattagatggcaatgttggcttttcttcccacagGTACCCAAATATATCTTGTGAGTTGCTTACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAATCCCCCTTGAACCCACTACTTGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGgtgagtattgtattcagcggtaactgtctgggctgcacatctccaaggtg #### Prdx3_ID13364_3 --> 2 - 2 Original Alignment gtTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATtt ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacaggtTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATttgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg Alignment from CESAR gtTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATtt ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacaggtTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATttgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg Alignment from Spaln_aa2Genome GTTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTT ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacagGTTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTTgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg Alignment from Spaln_nt2Genome GTTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTT ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacagGTTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTTgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg Alignment from Pairagon GTTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTT ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacagGTTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTTgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg Alignment from Exonerate_protein2genome GTTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTT ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacagGTTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTTgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg Alignment from Exonerate_coding2genome GTTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTT ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacagGTTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTTgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg Alignment from GeneWise GTTCCTCTTTCCACACCCCTGCTGTCACCCAGCACGCGCCCTATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAGCTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTT ctaagtaacatcatgcagtgctactttcttgggtttatgttctttgacagGTTCCTCGTTCCACACCCCTGCTGTCACACAGCATGCACCATATTTTAAAGGTACTGCTGTTGTCAATGGAGAGTTCAAAGAACTGAGTCTCGACGACTTTAAGGGAAAATACTTGGTGCTTTTCTTCTACCCTTTGGATTTgtatgtctgattttataaatgttttcatgtccctcagatagttggtagtg #### Prdx3_ID13365_2 --> 0 - 1 Original Alignment GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCa gtccctctctcaaaaagccttcctaatttttcttttaattcttttccaagGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTagtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact Alignment from CESAR GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCa gtccctctctcaaaaagccttcctaatttttcttttaattcttttccaagGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTagtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact Alignment from Spaln_aa2Genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtccctctctcaaaaagccttcctaatttttcttttaattcttttccaagGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTAgtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact Alignment from Spaln_nt2Genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtccctctctcaaaaagccttcctaatttttcttttaattcttttccaagGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTAgtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact Alignment from Pairagon GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtccctctctcaaaaagccttcctaatttttcttttaattcttttccaagGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTAgtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact Alignment from Exonerate_protein2genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtccctctctcaaaaagccttcctaatttttcttttaattcttttccaagGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTAgtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact Alignment from Exonerate_coding2genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtccctctctcaaaaagccttcctaatttttcttttaattcttttccaagGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTAgtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact Alignment from GeneWise GCGGCAGCTGCGGGAAGGTTGCTCTGGTCCTCGGTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA cctaatttttcttttaa---------------------TTCTTTTCCAAGGTTGCTCGTCACGCAAGTGCCATTTCTCGGGGCATTTCTGCCTCAACAGTCCTTAGGCCTGTTGCTTCTAGAAGATCGTGTTTGACAGACATTCTGTGGTCTGCCGCTGCTCAGGGAAAGTCAGCCTTTAGCACTAgtggggataactgtgctgttaccacgctaggaaagtcagcctttagcact #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg Alignment from GeneWise GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaaggcctctactgatttttttttttttatagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaagggtaccttgccatgcaatcagtctttgagggacacatatacaggg #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGgtaaggagtctctgtggctcattgtgagggtccagggccaggtaggaagt Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAGGTTCGGC ctataagtatctgcacctgcttttcattccccccccccaacccccgacagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCTCATGAAGCAGAAGGTAAGGTAAGGAgtctctgtggctcattgtgagggtccagggccaggtaggaagt #### Prkg1_ID6497_10 --> 1 - 0 Original Alignment aTATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagaTATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAGTAGAACCGgcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct Alignment from CESAR aTATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagaTATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAGTAGAACCGgcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct Alignment from Spaln_aa2Genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagATATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAGTAGAACCGgcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct Alignment from Spaln_nt2Genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagATATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAGTAGAACCGgcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct Alignment from Pairagon ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagATATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAGTAGAACCGgcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct Alignment from Exonerate_protein2genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagATATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAGTAGAACCGgcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct Alignment from Exonerate_coding2genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagATATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAGTAGAACCGgcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct Alignment from GeneWise ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGACACCCTTGGAGTTGGAGGTTTCGGACGA tcttgttatcctgcctaagtaatcttcatataccctccctctattcctagATATGAAGCCGAGGCCGATTTCTTTGCCAACCTGAAACTGTCTGATTTTAACATCATTGACACCCTTGGAGTTGGAGGTTTTGGACGAgtagaaccggcaaaggacttccttgaacactctaggaagctcttctctctcctcatcct #### Prkg1_ID6524_5 --> 1 - 0 Original Alignment tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag Alignment from CESAR tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag Alignment from Spaln_aa2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag Alignment from Spaln_nt2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag Alignment from Pairagon TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag Alignment from Exonerate_protein2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag Alignment from Exonerate_coding2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag Alignment from GeneWise TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG aatccccatacagatgtgccgtatctacagactggttttttattttctagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAGgtgagggttttgataacttgtactttgtgtatctcaagattggaaccaag #### Prkg1_ID6530_4 --> 2 - 2 Original Alignment ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag ccgagtgagatggattaatttgccccttattcacaactttatttccacagctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAaggtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta Alignment from CESAR ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag ccgagtgagatggattaatttgccccttattcacaactttatttccacagctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAaggtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta Alignment from Spaln_aa2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgagatggattaatttgccccttattcacaactttatttccacagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta Alignment from Spaln_nt2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgagatggattaatttgccccttattcacaactttatttccacagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta Alignment from Pairagon CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgagatggattaatttgccccttattcacaactttatttccacagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta Alignment from Exonerate_protein2genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgagatggattaatttgccccttattcacaactttatttccacagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta Alignment from Exonerate_coding2genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgagatggattaatttgccccttattcacaactttatttccacagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta Alignment from GeneWise CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ccgagtgagatggattaatttgccccttattcacaactttatttccacagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAGgtaagtcatgttgtttcttctcatcttgaaggttttgtttgttgcctcta #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAggtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAggtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from Exonerate_coding2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcaccccttctctaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatggcttttctcctgtacacaccctcctgttctcacccctTCTCTAGTC---------TCCAATGAAGTGCCAGAGCACCCATGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtacgagcctgctgcaagttcactgccagtgctactcagcccccaagcca #### Psat1_ID3962_7 --> 1 - 2 Original Alignment cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc Alignment from CESAR cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc Alignment from Spaln_aa2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc Alignment from Spaln_nt2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc Alignment from Pairagon CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc Alignment from Exonerate_protein2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc Alignment from Exonerate_coding2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc Alignment from GeneWise CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT atcatcttgtctttttggagtgaaaaggtaaccaatgaccatcctgacagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagctaatgcgttatagatactatgaactagagatgctttcatgaagc #### Psat1_ID3964_5 --> 2 - 0 Original Alignment aaATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagaaATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat Alignment from CESAR aaATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagaaATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat Alignment from Spaln_aa2Genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagAAATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat Alignment from Spaln_nt2Genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagAAATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat Alignment from Pairagon AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagAAATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat Alignment from Exonerate_protein2genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagAAATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat Alignment from Exonerate_coding2genome AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagAAATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat Alignment from GeneWise AAATTCCAGACCCAAGCACCTGGAACCTCAACCCGGACGCCTCCTATGTATACTTCTGTGCAAACGAGACTGTGCACGGGGTGGAGTTTGACTTCGTACCTGACGTCAAGGGAGCGGTGCTGGTCTGTGACATGTCCTCAAACTTCTTATCCAGGCCGGTGGATGTTTCCAAG atgccttccctataaaaaacagaagtttccctgtttcctttttcttgtagAAATCCCAGACCCAAGCACATGGAACCTCAACCCAGACACCTCCTATGTATACTTCTGTGCAAATGAGACTGTGCATGGGGTTGAGTTTGACTTTGTTCCTGATGTCAAGGGTTCAGTGCTAGTCTGTGACATGTCTTTGAACTTCTTATCCAGTCCAGTGGATGTCTCTAAGgtgagcaagagcgtaacgtaggatcaagaagcatcaaatgtttctttgat #### Ptar1_ID5194_4 --> 1 - 2 Original Alignment gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagaAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACaggtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc Alignment from CESAR gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagaAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACaggtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc Alignment from Spaln_aa2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACAGgtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc Alignment from Spaln_nt2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACAGgtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc Alignment from Pairagon GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACAGgtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc Alignment from Exonerate_protein2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACAGgtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc Alignment from Exonerate_coding2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACAGgtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc Alignment from GeneWise GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG agggccaaggacactagaattgaggagttgcacgtgtgctctccatgcagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCACAGgtgagttgataatgttgtattactgctcagtatgtaagctcagggccagc #### Ptar1_ID5195_5 --> 1 - 0 Original Alignment gCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcaggCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt Alignment from CESAR gCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcaggCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt Alignment from Spaln_aa2Genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcagGCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt Alignment from Spaln_nt2Genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcagGCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt Alignment from Pairagon GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcagGCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt Alignment from Exonerate_protein2genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcagGCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt Alignment from Exonerate_coding2genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcagGCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt Alignment from GeneWise GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG cattctcacccccattctttcctcttcacttttctcctgtgacttctcagGCGCTGGGTGCTGCAACAGTTAAGTCAGGAAACATTCCAGCCATCCTCTGTTGCGAAAGGAAGTTTAGGTGCTGTTCCTGCTGAGAGGACACAGCGGATAATACAGGAGGAGATGGAAGTCTGCAGCGAAGCTGCAGGGAGATATCCTAGCAATTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATTTGAAGgtgagtattcttcattgtagacacccactaagaacctggagaacgctctt #### Pten_ID6749_7 --> 2 - 0 Original Alignment atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagatCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg Alignment from CESAR atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagatCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg Alignment from Spaln_aa2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagATCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg Alignment from Spaln_nt2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagATCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg Alignment from Pairagon ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagATCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg Alignment from Exonerate_protein2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagATCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg Alignment from Exonerate_coding2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagATCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg Alignment from GeneWise ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG agtttaagatacagcttgtaaaatgatcggctgagcatgggcctctgcagATCCTCAGTTTGTCGTCTGCCAACTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTCGTCCACAAGCAGAACAAGATGCTCAAAAAGgtgagtaatttctcaatgagtaaccacagacattttgattaaagcctctg #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagctTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagctTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGGCTT gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTGATGCACCCTGACCCTAACCTTgtggtgtttagtcacaataacaagac Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGGCTT gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTGATGCACCCTGACCCTAACCTTgtggtgtttagtcacaataacaagac Alignment from GeneWise CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG gttactcactttgggttcatacagatgtatgcccctgccccctgctgcagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgatgcaccctgaccctaaccttgtggtgtttagtcacaataacaagac #### Pygm_ID1682_6 --> 0 - 1 Original Alignment GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACt cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACtgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc Alignment from CESAR GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACt cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACtgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc Alignment from Spaln_aa2Genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc Alignment from Spaln_nt2Genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc Alignment from Pairagon GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc Alignment from Exonerate_protein2genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc Alignment from Exonerate_coding2genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc Alignment from GeneWise GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT cccgcccaaaattggacccaggcagcttgagaggtacttaatatccacagGTAGTACTCGCTATGCCCTATGACACTCCTGTACCTGACTATCGGAACAATGTTGTTAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtaagtctctctgttggcagctagcactccttgtttcccctgcttgtacc #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagtcAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagtcAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga #### Pyroxd2_ID8593_15 --> 0 - 1 Original Alignment AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTg gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTggtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt Alignment from CESAR AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTg gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTggtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt Alignment from Spaln_aa2Genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTGgtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt Alignment from Spaln_nt2Genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTGgtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt Alignment from Pairagon AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTGgtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt Alignment from Exonerate_protein2genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTGgtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt Alignment from Exonerate_coding2genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTGgtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt Alignment from GeneWise AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG gagctggactggtgcttcttcatagccctttccaccttctctccacccagAACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCTGTTCAGTGCCCCAACACTCGGACTACAGATGCCCAGTGCATGGCCTGTACCTTTGTGGGAGTGGGGCCCATCCTGgtgagcgacccatctcatgtgtaggctgtgtcgaactgtggagtgaatgt #### Pyroxd2_ID8603_5 --> 0 - 0 Original Alignment AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc Alignment from CESAR AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc Alignment from Spaln_aa2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc Alignment from Spaln_nt2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc Alignment from Pairagon AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc Alignment from Exonerate_protein2genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc Alignment from Exonerate_coding2genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc Alignment from GeneWise AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG acagcagaaacatgggtccctaagatgtaggtgtttggcccttccctcagAAACATGGGCTGAAACTTCATTTGAGAGACCCCTACTCCTTCACCCCCATGGTGGAAGAGGGCACACTGAATAGGCTGCCGAGGTCGCTGCTACTGGGCACAGACATGGCTGCAAACCAGAAAGAAATCTCTCAGTTCTCACGGAAGGATGCTCAGgtgagtaaagtgattacaaactaaagcttcagtccacacagagccatctc #### Pyroxd2_ID8606_2 --> 2 - 0 Original Alignment gaCACAATGGGCTGGTGGCT aaagggactaataacttaaagactatgtcattctctctgttttgttgaaggaCACAATGGGCTGGTGGCTgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc Alignment from CESAR gaCACAATGGGCTGGTGGCT aaagggactaataacttaaagactatgtcattctctctgttttgttgaaggaCACAATGGGCTGGTGGCTgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc Alignment from Spaln_aa2Genome GACACAATGGGCTGGTGGCT aaagggactaataacttaaagactatgtcattctctctgttttgttgaagGACACAATGGGCTGGTGGCTgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc Alignment from Spaln_nt2Genome GACACAATGGGCTGGTGGCT aaagggactaataacttaaagactatgtcattctctctgttttgttgaagGACACAATGGGCTGGTGGCTgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc Alignment from Pairagon GACACAATGGGCTGGTGGCT aaagggactaataacttaaagactatgtcattctctctgttttgttgaagGACACAATGGGCTGGTGGCTgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc Alignment from Exonerate_protein2genome GACACAATGGGCTGGTGGCT aaagggactaataacttaaagactatgtcattctctctgttttgttgaagGACACAATGGGCTGGTGGCTgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc Alignment from Exonerate_coding2genome GACACAATGGGCTGGTGGCT aaagggactaataacttaaagactatgtcattctctctgttttgttgaagGACACAATGGGCTGGTGGCTgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc Alignment from GeneWise aaagggactaataacttaaagactatgtcattctctctgttttgttgaaggacacaatgggctggtggctgtgagtacctcttgggcatcacttcagtgtcctcaacagctaaggggtcc #### R3hcc1l_ID8549_3 --> 1 - 1 Original Alignment aAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAg aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagaAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAggtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt Alignment from CESAR aAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAg aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagaAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAggtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt Alignment from Spaln_aa2Genome AAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAG aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagAAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAGgtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt Alignment from Spaln_nt2Genome AAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAG aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagAAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAGgtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt Alignment from Pairagon AAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAG aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagAAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAGgtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt Alignment from Exonerate_protein2genome AAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAG aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagAAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAGgtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt Alignment from Exonerate_coding2genome AAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAG aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagAAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAGgtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt Alignment from GeneWise AAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAG aattcaagctgtatgcaaagaattgtaaacctgtgtgcttgtttttatagAAAGAAAGGATTTGATATTAAGTGGGTAGATGACACACATGCCCTAGGAGTTTTCGCCAGCCCAATCACAGgtgaactctggtaaactttcaggatatccaggcccgtgtgtttagtcatt #### Rab11fip2_ID13100_4 --> 1 - 0 Original Alignment tTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagcTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag Alignment from CESAR tTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagcTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag Alignment from Spaln_aa2Genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagCTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag Alignment from Spaln_nt2Genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagCTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag Alignment from Pairagon TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagCTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag Alignment from Exonerate_protein2genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagCTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag Alignment from Exonerate_coding2genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagCTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag Alignment from GeneWise TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG aggatatagtctgtgtcaagttcacattgatccctgcctgcacgctccagCTTTCATGTGAACCCAACAAGCAGTGAAGATCTCAGGAAAATCCCAgtgagttaccaagaaatgatccccaggaagcaacccccacttctccccag #### Rab11fip2_ID13108_2 --> 1 - 1 Original Alignment gTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTg tcattaccctcattatttgctacaccccccttttttcccccctggggcaggTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCC------CCGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTggtgagtgggtcatacattatgttttccacacttatagtggatccaagcct Alignment from CESAR gTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTg tcattaccctcattatttgctacaccccccttttttcccccctggggcaggTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCC------CCGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTggtgagtgggtcatacattatgttttccacacttatagtggatccaagcct Alignment from Spaln_aa2Genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG tcattaccctcattatttgctacaccccccttttttcccccctggggcagGTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCC------CCGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTGgtgagtgggtcatacattatgttttccacacttatagtggatccaagcct Alignment from Spaln_nt2Genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG tcattaccctcattatttgctacaccccccttttttcccccctggggcagGTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCCC------CGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTGgtgagtgggtcatacattatgttttccacacttatagtggatccaagcct Alignment from Pairagon GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG tcattaccctcattatttgctacaccccccttttttcccccctggggcagGTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCCC------CGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTGgtgagtgggtcatacattatgttttccacacttatagtggatccaagcct Alignment from Exonerate_protein2genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG tcattaccctcattatttgctacaccccccttttttcccccctggggcagGTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCC------CCGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTGgtgagtgggtcatacattatgttttccacacttatagtggatccaagcct Alignment from Exonerate_coding2genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG tcattaccctcattatttgctacaccccccttttttcccccctggggcagGTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCC------CCGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTGgtgagtgggtcatacattatgttttccacacttatagtggatccaagcct Alignment from GeneWise GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTGGAAG tcattaccctcattatttgctacaccccccttttttcccccctggggcagGTGGTACAGATTAGAGTCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAGAGGTCAATATTCAATATATGAGGAACAATATGACAGCCAGCATGTTTGACTTGTCGATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAGAGATAAGATGAAAGGAAGAAAGAGTGATGGGGTGTTTTCTGAGACATCCTCTGCTATCATTCCAAGCACTCACATCCCTGATCCCAATCCTGAGTTTTCAAGTGGTGAAATGCAAATGGAATCCAAAGCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGACTCTCTTCTGCCCATTCAATGTCTGAGTTGACGGGGTCC------CCGTCTGAGATGCTGAAATCGAGCACTGTGGGTCCAACACATCTTCTCAGTTGCCAGATAGATTCCTATGGGGTTGTTCCAGAAAGTGGTGAgtgggtcatacattatgttttccacacttatagtggatccaagcct #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT tgtctgctcagtcttgctgcctgctcaggagtattattatttttttgtagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtgtggttaagcctgctccagacatctgactgaagtcattcaacaaaaat #### Rab3il1_ID2646_2 --> 1 - 0 Original Alignment cCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG gttttgactcctaatcctgtgatgcctccttggtacccctgtacccacagcCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag Alignment from CESAR cCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG gttttgactcctaatcctgtgatgcctccttggtacccctgtacccacagcCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag Alignment from Spaln_aa2Genome CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG gttttgactcctaatcctgtgatgcctccttggtacccctgtacccacagCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag Alignment from Spaln_nt2Genome CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG gttttgactcctaatcctgtgatgcctccttggtacccctgtacccacagCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag Alignment from Pairagon CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG gttttgactcctaatcctgtgatgcctccttggtacccctgtacccacagCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag Alignment from Exonerate_protein2genome GGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG gttttgactcctaatcctgtgatgcctccttggtacccctgtacccacAGCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag Alignment from Exonerate_coding2genome GGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG gttttgactcctaatcctgtgatgcctccttggtacccctgtacccacAGCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag Alignment from GeneWise TGGAGCGGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG ttgactcctaatcctgtgatgcctccttggtacccctgtacc---CACAGCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAATCTAGGCCCCAGTAAAAGTAACAGGGAATCCTCAGGAGGTCTGGTAGAAGCCTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGGCACCTGCTCCACTGGATGTGTCGCGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGGAGGGCTCGGAGTTCTTAAAGGAGGAGTTATACAAAGCTCAAAAGgtaagtgctccaggagaaggttggtgctgagtaggagcagctacactgag #### Rab3il1_ID2649_5 --> 0 - 0 Original Alignment ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAAC---CGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg Alignment from CESAR ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAACCGT---GAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg Alignment from Spaln_aa2Genome ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAACCGT---GAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg Alignment from Spaln_nt2Genome ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAACC---GTGAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg Alignment from Pairagon ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAACC---GTGAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg Alignment from Exonerate_protein2genome ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAACCGT---GAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg Alignment from Exonerate_coding2genome ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAACCGT---GAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg Alignment from GeneWise ATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACATTGGTCATCACATCCACACCAGCCTCTCCCAACCGT---GAGCTCCACCCACAGCTGCTGAGCCCCACCAAAGCTGGACCCCGAAAGGGCCACTCACGTCAAAAGAGCACCAGCAGCTCCCTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCTACCCCTGACAAAGAAGGCAAGGAG atggtgacattaattccatgtcgggttactgattttggtgtgcattgcagATCGACATGCTACAGGCAGAGGTGACAGCCTTGAAGACCTTAGTCATCACATCCACACCAGCCTCTCCCACCCGATGTGAGCTCCACCCACAGCTGCTGAGCCCCACCAGAGCTAGACCCCGAAAGGGCCACTCGCGTCAAAAGAGCACCAGCAGCTTTTTCTGCCCTGTTGTGTGCCCCACTGCAGGGCATATCCCAACACCTGACAAAGAAGGCAAGCAGgtacgtcacaggctgtgatagtgcattcactatcaggaatcttgatcatg #### Rab3il1_ID2653_8 --> 1 - 0 Original Alignment cACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagtACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa Alignment from CESAR cACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagtACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa Alignment from Spaln_aa2Genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagTACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa Alignment from Spaln_nt2Genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagTACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa Alignment from Pairagon CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagTACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa Alignment from Exonerate_protein2genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagTACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa Alignment from Exonerate_coding2genome CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagTACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa Alignment from GeneWise CACATGTGCCCTGAGTGGCCTGGCACGTACCTGCCACCATCGAATCCGCCTGGGGGACTCTGACAGCCACTATTACATCTCACCGTCCTCCCGGGCCAGG tatccagcatctgttacccacattcagctggtctgttcttcccctgtaagTACATGTGCCCTTAGTGGCCTGGCACGTACGTGCCACCATCGAATCCGCCTAGGGGACTCTGACAGCCACTATTACATCTCATCGGCCACCCGGGCTAGGgtgcgtcagctacccttcgccctggtagtgcgcaacatggtgtggtggaa #### Rab3il1_ID2654_9 --> 0 - 1 Original Alignment ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATggtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc Alignment from CESAR ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATggtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc Alignment from Spaln_aa2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc Alignment from Spaln_nt2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc Alignment from Pairagon ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc Alignment from Exonerate_protein2genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc Alignment from Exonerate_coding2genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc Alignment from GeneWise ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcatcaggggaatcctagtgtgtcacctcgacttggtttttgtttacagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATGgtaagaggcccctaataatcttctccagaaatagtgcatgtgtgggaggc #### Rasgrp2_ID1708_7 --> 0 - 0 Original Alignment AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag Alignment from CESAR AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag Alignment from Spaln_aa2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag Alignment from Spaln_nt2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag Alignment from Pairagon AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag Alignment from Exonerate_protein2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag Alignment from Exonerate_coding2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag Alignment from GeneWise AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG gctaaggggtgctgagtctcgcatgactccagtctctgctttttcctaagAGGCTGCTCCAGCTGCAGAACTTCAACACACTCATGGCAGTCGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCACAGCCACGTCAGCCCTGACACCATTAAGgtgagtggtctaagctgttgcttctcatccacagactctgcagtgcagag #### Rasgrp2_ID1714_13 --> 0 - 1 Original Alignment ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAg accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAggtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt Alignment from CESAR ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAg accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAggtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt Alignment from Spaln_aa2Genome ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAGgtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt Alignment from Spaln_nt2Genome ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAGgtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt Alignment from Pairagon ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAGgtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt Alignment from Exonerate_protein2genome ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAGgtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt Alignment from Exonerate_coding2genome ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAGgtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt Alignment from GeneWise ATCCTGGGCATCTACAAGCAGGGCCTTAAATGTAGAG accttaaagcccttacccccaggcaactctgtgactttttttaaatatagATCCTGCGAATCTACAAACAGGGCCTTAAATGTAGAGgtagcctatgatcagtgctagaaaatggcctgcctgatgtatcacacttt #### Rbm14_ID653_2 --> 2 - 2 Original Alignment acTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAag aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagacTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGaggtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg Alignment from CESAR acTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAag aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagacTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGaggtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg Alignment from Spaln_aa2Genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagACTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGAGgtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg Alignment from Spaln_nt2Genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagACTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGAGgtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg Alignment from Pairagon ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagACTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGAGgtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg Alignment from Exonerate_protein2genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagACTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGAGgtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg Alignment from Exonerate_coding2genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagACTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGAGgtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg Alignment from GeneWise ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG aggttgtactgcagttctaattgttaaccctgcctactttctccgcgcagACTATGCATTTGTTCACATGGAGAAAGAAGCAGATGCCAAAGCTGCCATTACACAGCTCAATGGTAAAGAAGTGAAGGGGAAGCGCATCAATGTGGAACTCTCAACGAAGGGGCAGAGGAAGGGGCCTGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGCGGATTCTCTGCCACCTTCGATTACCAGCAGGCTTTTGGCAACAGCACTGGAGGCTTTGATGGGCAAGCCCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCACCTCCTCGGGCCTCTTATGTGGCACCTCTGATGGCCCAGCCAGCCACTTACCGGGCTCAACCCTCAGTGTCTCTGGGAGCTGCTTATAGGGCCCAACCTTCTGCCTCTTTGGGTGTTGACTATCGGTCACCCCCAATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCACTTGGGGCCCCATACAGGGGCCAGCTGGTTAGTCCTAGTTCCCAGTCTGCTGCAGCATCCTCACTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCTCTTTCCACTTATGGGGGTCAGGCAGCTGCGGCCTCTTCACTTAACTCTTATGGGGCCCAGGGCTCTTCACTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGAGCTCAGGCTGCCTCGTCATATGGTGTTCGTGCAGATGCCTCTTCCTATAACACACAAGGAGCTGCCTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCTTCCTATGGTGCCCATTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCATCTTACAGTGCCCAGCCATCAGCCTCTTACAGCGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCGTCTCATTCCTCCCAGCCCGCTGCTTCTGTGGCACAACCAGCTGCAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACGAGCCACCACCCCAATGGCTGGTTCTTATGGGGCTCAACCAGTTGTTCAGACACAGCTTAATAGCTATGGGGCTCAACCATCTATCGGCCTGTCAGGCCCCTACGGAGCTCAGGCTGCGGCTGCAGCAACTGGCTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCTGCAACCCTGGTAGCACCTTACCGAACACAGTCATCAACCTCATTGGCTGCTTCCTATGCTGCCCAGCAGTACCCCCAGGCTGCTGCCTCCTATCGTGGCCAACCAGGCAGTGCCTACGATGGGACAGGCCAGCCATCAACAGCCTACCTCTCTAAGTCCCAAGGGGCCATTGCCAATGCCAATAGCGCCCCACCACCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCGATGTCAAAGAGgtaaaacacatctcaacctatagctgggcgttggggaatcagaagccctg #### Rbm20_ID11381_8 --> 0 - 2 Original Alignment AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACag catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACaggtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct Alignment from CESAR AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACag catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACaggtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct Alignment from Spaln_aa2Genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACAGgtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct Alignment from Spaln_nt2Genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACAGgtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct Alignment from Pairagon AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACAGgtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct Alignment from Exonerate_protein2genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACAGgtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct Alignment from Exonerate_coding2genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACAGgtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct Alignment from GeneWise AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG catttctaataattgtgatgatgtctaactcaaggccgtgcttttcccagAAACCTGGGAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTCCAGGAAGCGGACAGgtacggctttgtgtttcactcagatttgatgccttgagggtaaaacacct #### Rbm20_ID11383_10 --> 0 - 0 Original Alignment GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct Alignment from CESAR GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct Alignment from Spaln_aa2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct Alignment from Spaln_nt2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct Alignment from Pairagon GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct Alignment from Exonerate_protein2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct Alignment from Exonerate_coding2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct Alignment from GeneWise GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG gtctggagacataacttctggtcttgttatgtctctgctatctcccatagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtacgattgtaccctcttcatactgatggtgtcataaatcagcatcagct #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagcgTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAggtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagcgTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAggtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagCGTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagCGTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagCGTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagCGTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagCGTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgtttgtgtggtctgctctctttctttaactagCGTTTCAGTTCTCCTACACTGCTGTCTTCGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggatcgaggcaaaggtttgatcaccatctt #### Rcl1_ID6211_2 --> 2 - 1 Original Alignment atTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAg tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagatTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAggtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg Alignment from CESAR atTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAg tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagatTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAggtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg Alignment from Spaln_aa2Genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagATTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAGgtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg Alignment from Spaln_nt2Genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagATTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAGgtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg Alignment from Pairagon ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagATTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAGgtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg Alignment from Exonerate_protein2genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagATTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAGgtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg Alignment from Exonerate_coding2genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagATTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAGgtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg Alignment from GeneWise ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tttacaaaatagtgccttggggaagattgatatggctccttgtcccacagATTTTGAAGCAAGCTTTATAAAGCTATTGGATAAAATCACCAACGGCTCCCAAGTTGCAATCAACCAAACAGgtgagtcatcttcctctctgttccagaaagtatccacagtactactttgg #### Rcl1_ID6217_6 --> 1 - 2 Original Alignment gTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGaa tcaccaccatggtatcccacattaacaagagtttttccattatttttcaggTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGaagtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc Alignment from CESAR gTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGaa tcaccaccatggtatcccacattaacaagagtttttccattatttttcaggTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGaagtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc Alignment from Spaln_aa2Genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccaccatggtatcccacattaacaagagtttttccattatttttcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAAgtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc Alignment from Spaln_nt2Genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccaccatggtatcccacattaacaagagtttttccattatttttcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAAgtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc Alignment from Pairagon GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccaccatggtatcccacattaacaagagtttttccattatttttcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAAgtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc Alignment from Exonerate_protein2genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccaccatggtatcccacattaacaagagtttttccattatttttcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAAgtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc Alignment from Exonerate_coding2genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccaccatggtatcccacattaacaagagtttttccattatttttcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAAgtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc Alignment from GeneWise GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccaccatggtatcccacattaacaagagtttttccattatttttcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAAgtaagtgcccttcagagcagcctggagggcagcctgcagtggccgagctc #### Rcor2_ID2091_2 --> 2 - 1 Original Alignment agAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc cttctgggccttacctccacctccttgctttcttcctgtctctattctagagAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAAcgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt Alignment from CESAR agAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc cttctgggccttacctccacctccttgctttcttcctgtctctattctagagAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAAcgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt Alignment from Spaln_aa2Genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggccttacctccacctccttgctttcttcctgtctctattctagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAACgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt Alignment from Spaln_nt2Genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggccttacctccacctccttgctttcttcctgtctctattctagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAACgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt Alignment from Pairagon AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggccttacctccacctccttgctttcttcctgtctctattctagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAACgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt Alignment from Exonerate_protein2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggccttacctccacctccttgctttcttcctgtctctattctagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAACgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt Alignment from Exonerate_coding2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggccttacctccacctccttgctttcttcctgtctctattctagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAACgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt Alignment from GeneWise AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggccttacctccacctccttgctttcttcctgtctctattctagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCGGATGCCAAACgtaagtgcactgggccttcgtattcagatccaggaagcgggtttggcatt #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagttGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagttGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg #### Rcor2_ID2093_4 --> 0 - 0 Original Alignment GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga Alignment from CESAR GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga Alignment from Spaln_aa2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga Alignment from Spaln_nt2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga Alignment from Pairagon GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga Alignment from Exonerate_protein2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga Alignment from Exonerate_coding2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga Alignment from GeneWise GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatcctttttgttgtttctttgtggctagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCAGATGAGTGGACAGTAGAGGATAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaggcctatacttggggccccttgaatactcctctgccctttagtcaga #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagtGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagtGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagtaggaccttccctcatttttcatattgcttttttattccagTGATGAACTAGAAGAGGGACGGGGAGCCGTGAGTGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtacattccacgagctcttctgtcctatccaccactaagcttgtccctgg #### Rela_ID1125_2 --> 2 - 1 Original Alignment atCTGTTTCCCCTCATCTTTCCCTCAg acgttgggcattggagtcagttaatagtggattcctactcccatctacagatTTCTTTCCTCTCATCTTTCCCTCGggtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg Alignment from CESAR atCTGTTTCCCCTCATCTTTCCCTCAg acgttgggcattggagtcagttaatagtggattcctactcccatctacagatTTCTTTCCTCTCATCTTTCCCTCGggtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg Alignment from Spaln_aa2Genome ATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaatagtggattcctactcccatctacagATTTCTTTCCTCTCATCTTTCCCTCGGgtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg Alignment from Spaln_nt2Genome ATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaatagtggattcctactcccatctacagATTTCTTTCCTCTCATCTTTCCCTCGGgtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg Alignment from Pairagon ATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaatagtggattcctactcccatctacagATTTCTTTCCTCTCATCTTTCCCTCGGgtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg Alignment from Exonerate_protein2genome GATCTGTTTCCCCTCATCTTTCCCTCAG acgttgggcattggagtcagttaatagtggattcctactcccatctacaGATTTCTTTCCTCTCATCTTTCCCTCGGgtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg Alignment from Exonerate_coding2genome acgttgggcattggagtcagttaatagtggattcctactcccatctacagatttctttcctctcatctttccctcgggtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg Alignment from GeneWise acgttgggcattggagtcagttaatagtggattcctactcccatctacagatttctttcctctcatctttccctcgggtatgttacccatcagtcttcacttggcaggggctaggctgaattggggg #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGggtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGggtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg #### Rfx3_ID5875_15 --> 0 - 1 Original Alignment TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAggtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg Alignment from CESAR TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAggtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg Alignment from Spaln_aa2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg Alignment from Spaln_nt2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg Alignment from Pairagon TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg Alignment from Exonerate_protein2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg Alignment from Exonerate_coding2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg Alignment from GeneWise TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctattttgctagtaataactactacgctcacagtatctgtcctccagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgaagacagaaaattctgaagatctttttggttgaacatctgtgagagg #### Rfx3_ID5891_8 --> 2 - 0 Original Alignment atGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagatGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata Alignment from CESAR atGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagatGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata Alignment from Spaln_aa2Genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagATGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata Alignment from Spaln_nt2Genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagATGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata Alignment from Pairagon ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagATGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata Alignment from Exonerate_protein2genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagATGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata Alignment from Exonerate_coding2genome ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagATGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata Alignment from GeneWise ATGCATCTCGAGCACTTCCAGAGTTTGGAGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAGGATATCAAGTCACTGCAGAGTCTTTATCGAGAGCACTGTGAG aggttaccatccacaataactattcttcctttttatcccttaaaaaacagATGCATCTCGCGTTCTTCCAGAGTTTGGCGAAGTTGAAATCTCTTCTCTGCCAGATGGTACTACCTTTGAAGATATCAAGTCACTTCAGAGCGTTTATCGAGAGCACTGTGAGgttggctgtttttaattgtagttcagccacatgctaaattttgccatata #### Rfx3_ID5894_6 --> 1 - 2 Original Alignment aGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAag tactattagttctactggcttttcatgtagatcttcttgttgccatctagaGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAaggtacaatccatgtttttgtatatgaactacatacatataaactatataga Alignment from CESAR aGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAag tactattagttctactggcttttcatgtagatcttcttgttgccatctagaGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAaggtacaatccatgtttttgtatatgaactacatacatataaactatataga Alignment from Spaln_aa2Genome AGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAG tactattagttctactggcttttcatgtagatcttcttgttgccatctagAGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAGgtacaatccatgtttttgtatatgaactacatacatataaactatataga Alignment from Spaln_nt2Genome AGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAG tactattagttctactggcttttcatgtagatcttcttgttgccatctagAGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAGgtacaatccatgtttttgtatatgaactacatacatataaactatataga Alignment from Pairagon AGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAG tactattagttctactggcttttcatgtagatcttcttgttgccatctagAGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAGgtacaatccatgtttttgtatatgaactacatacatataaactatataga Alignment from Exonerate_protein2genome AGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAG tactattagttctactggcttttcatgtagatcttcttgttgccatctagAGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAGgtacaatccatgtttttgtatatgaactacatacatataaactatataga Alignment from Exonerate_coding2genome AGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAG tactattagttctactggcttttcatgtagatcttcttgttgccatctagAGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAGgtacaatccatgtttttgtatatgaactacatacatataaactatataga Alignment from GeneWise AGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAG tactattagttctactggcttttcatgtagatcttcttgttgccatctagAGGAAACTCCAAATACCATTACTATGGGATTCGTGTGAAGCCAGATTCTCCTCTTAACCGTCTACAAGAAGATATGCAGTACATGGCTATGAGGCAGCAGCCCATGCAACAGAAGCAAAGgtacaatccatgtttttgtatatgaactacatacatataaactatataga #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg tcttgctacccggagccattcatcaggctagcattttcccctcattgtagaGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg tcttgctacccggagccattcatcaggctagcattttcccctcattgtagaGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tcttgctacccggagccattcatcaggctagcattttcccctcattgtagAGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tcttgctacccggagccattcatcaggctagcattttcccctcattgtagAGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt Alignment from Pairagon AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tcttgctacccggagccattcatcaggctagcattttcccctcattgtagAGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tcttgctacccggagccattcatcaggctagcattttcccctcattgtagAGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tcttgctacccggagccattcatcaggctagcattttcccctcattgtagAGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt Alignment from GeneWise AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG tcttgctacccggagccattcatcaggctagcattttcccctcattgtagAGCAATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtatgtgtaccctgcagcctgttacataagacatgcggaggttaattggt #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_nt2Genome ACTTCG -ACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG TTTTGGgtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_protein2genome ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctaggaccgccttatcggggccaccggaagcttcagccatttcacattgtggggtcttgaaacagtcccaggtccagatgccaaagtgcatagggccctaggatggcccaccctagcagcagcagtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATT ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTAcctagacttaggagcccctttttacctctgacagctgacaattcctc #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa #### Rpp30_ID7083_5 --> 0 - 0 Original Alignment AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc Alignment from CESAR AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc Alignment from Spaln_aa2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc Alignment from Spaln_nt2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc Alignment from Pairagon AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc Alignment from Exonerate_protein2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc Alignment from Exonerate_coding2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc Alignment from GeneWise AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT aacaaccacagcttgcattctttgataacatcctgtctggcccactccagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAAAAAGACTTTTCCATgtaagcggcatgtgaaacggagcaacatataaggatgtaagtggggaggc #### Rpp30_ID7090_10 --> 1 - 1 Original Alignment aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagaGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAggtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac Alignment from CESAR aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagaGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAggtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac Alignment from Spaln_aa2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac Alignment from Spaln_nt2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac Alignment from Pairagon AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac Alignment from Exonerate_protein2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac Alignment from Exonerate_coding2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac Alignment from GeneWise AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagacttcgtgcacccttcttgtgcttgttttgcagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtaaataaggtgttattcatggtacaaatcagaatggtctcattagagac #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata #### Rps6kb2_ID377_5 --> 0 - 1 Original Alignment GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTg ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTggtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc Alignment from CESAR GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTg ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTggtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc Alignment from Spaln_aa2Genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTGgtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc Alignment from Spaln_nt2Genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTGgtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc Alignment from Pairagon GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTGgtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc Alignment from Exonerate_protein2genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTGgtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc Alignment from Exonerate_coding2genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTGgtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc Alignment from GeneWise GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG ggtaagtaagctggctttccccctcccatgccttttttttttttctacagGCCAAGATCGTATGCAGTGCCAAGGACACAGCCCATACTCGGGCTGAGAGGAATATTTTAGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTGgtaacagaaggatggcaaggcttacatacctgcttgactgtgatgccatc #### Rps6kb2_ID378_4 --> 0 - 0 Original Alignment GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc Alignment from CESAR GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc Alignment from Spaln_aa2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc Alignment from Spaln_nt2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc Alignment from Pairagon GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc Alignment from Exonerate_protein2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc Alignment from Exonerate_coding2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc Alignment from GeneWise GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG ggatgagggatgaggtaaaagaagttaattctttgttttgtttgccttagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggtcatttgcttagccaataaaagacagagtaaccatcgacaccatc #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagtgcaaagtgacaggggggccttgtctgttgtacttctcagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtatgggggtgtggaaggctgtgggatcccaagcaacgcctgaggaggga #### Rrp12_ID8306_17 --> 0 - 1 Original Alignment ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from CESAR ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Spaln_aa2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Spaln_nt2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Pairagon ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Exonerate_protein2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Exonerate_coding2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from GeneWise ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCT caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTgtgaggcaggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagcaATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGATT---GATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat Alignment from CESAR caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagcaATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGATT---GATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagCAATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGATT---GATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagCAATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGATT---GATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagCAATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGAT---TGATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagCAATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGATT---GATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat Alignment from Exonerate_coding2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagCAATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGATT---GATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat Alignment from GeneWise CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG gtaggtcctctggtatgtatctatagccgtatcttgttttttatgtgtagCAATGGACCTAGCTCAAGCAGGAAGCACAGTGGAGTCAAAGATT---GATACACTCCAGTGGCAGgtgactgtcaactgggggttgacaagggatggagcatgtctatgaggcat #### Rrp12_ID8311_12 --> 0 - 2 Original Alignment GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCag agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGAT---GGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCaggtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct Alignment from CESAR GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCag agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGAT---GGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCaggtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct Alignment from Spaln_aa2Genome GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGAT---GGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCAGgtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct Alignment from Spaln_nt2Genome GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGA---TGGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCAGgtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct Alignment from Pairagon GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGA---TGGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCAGgtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct Alignment from Exonerate_protein2genome GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGAT---GGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCAGgtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct Alignment from Exonerate_coding2genome GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGAT---GGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCAGgtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct Alignment from GeneWise GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG agtgagtgacattgtgagtataccttgagccttctctttgccctccgcagGAGATTCTGAAGGACTGTGTGGCACCACACGTTGCTGAT---GGCTCTGTTACCTCTTCAGCCTCTGGTCCTCCCCATTACATCACTGAGATGTTCAGgtaagtgtgtggaggaacccttactggaagtctagagctctgtttaccct #### Rrp12_ID8313_10 --> 0 - 2 Original Alignment GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAaggtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from CESAR GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAaggtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Spaln_aa2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Spaln_nt2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Pairagon GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Exonerate_protein2genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Exonerate_coding2genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from GeneWise GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG gtgggatcctgctgactgaaactttcttctgactctcttgctgcccctagGCATTATATGACTATGTTCCCAGTGAGAATGATTTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATgcgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCgtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgatactggggcttctgatctttcagCTCCGTAAGAAAATGAGCTCTAGCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCTCATATTGTGCTCAGTGGCAGTGGCAAGAGTATGAATGCGtaagagtgggtaggagttggaagggtgggtggtaagctgaacgataggt #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcaggaCTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcaggaCTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG gagatgtgacatgacaaatggtgactgtagacctcctctttcctttatagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCCGACTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtatgtctgtggagtctgtgggatatccactggggctgatggtgttcgct #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagcAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagcAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGCCTCCAG------AAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag #### Scd2_ID8988_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGaggtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGaggtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGAGgtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGAGgtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGAGgtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGAGgtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGAGgtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgctaagtccctatgataaaactattttatcccatagAATGATGTTTATGAATGGGCACGAGATCACCGTGCCCACCACAAGTTCTCAGAAACACATGCTGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGACATGTCTGCCCTGAAAGCTGAGGAGCTAGTGATGTTCCAGAGGAGgtgagttctaggccaaggctaagactatttcccactgaccagttaaaagc #### Scd3_ID8975_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGGTA---TTCCAGAGGcggtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGGTA---TTCCAGAGGcggtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGGTA---TTCCAGAGGCGgtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGG---TATTCCAGAGGCGgtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGG---TATTCCAGAGGCGgtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGGTA---TTCCAGAGGCGgtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGGTA---TTCCAGAGGCGgtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ggagtcctctcttctccatgttgaccctcctgtcatgttccctccaacagAATGATGTGTATGAATGGGCTCGAGATCACCGGGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAATTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAACACCCAGCTGTCAAAGAGAAGGGCGGCAAACTGGACATGTCTGATCTCAAAGCCGAGAAGTTGGTA---TTCCAGAGGCGgtaagtgggggctgagggctggattgtgagagttgaggtttcaaggtctt #### Scd3_ID8976_5 --> 1 - 1 Original Alignment gTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagaTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGggtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc Alignment from CESAR gTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagaTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGggtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc Alignment from Spaln_aa2Genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagATACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGGgtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc Alignment from Spaln_nt2Genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagATACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGGgtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc Alignment from Pairagon GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagATACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGGgtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc Alignment from Exonerate_protein2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagATACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGGgtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc Alignment from Exonerate_coding2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagATACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGGgtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc Alignment from GeneWise GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ccatctgagtgagaacggccaatgttttacattggtctcctcaccctcagATACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGCAAGGCTTTTCTCACCAGCTTTTATGTTGCCACTTTACTGAGATATGCTGTGGTGCTGAATGCAACTTGGCTTGTGAACAGTGCTGCCCATCTCTATGGATATTGTCCCTATGGTACGAATATTGATCCCCGCCACAATGCACTGGTTTCCTTGGGAAGTATGGgtagagataggcagcagtctatgctgggcgtttaaacattgagtcaattc #### Scgb1a1_ID2589_2 --> 2 - 0 Original Alignment ctTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagctTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc Alignment from CESAR ctTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagctTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc Alignment from Spaln_aa2Genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc Alignment from Spaln_nt2Genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc Alignment from Pairagon CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc Alignment from Exonerate_protein2genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc Alignment from Exonerate_coding2genome CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc Alignment from GeneWise CTTCTTCGGACATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACG catttagaaaacaagctacatgctgcctatgaaaaatctcttccctttagCTTCTTCAGACATCTGCCCAGGATTTCTACAAGTCCTTGAGGCCCTCCTTATGGAATCAGAGTCTGGCTATGTGGCATCATTGAAGCCTTTCAACCTGGGCTCAGATCTGCAAAATGCAGGCACCCAGTTGAGGATACTAGTGGATACCCTCCCACAAGAGACCAGAATAAACATCATGAAGCCTACGgtaagtcacatctgtcacacatattgattctaagtggtcattcgctaagc #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT taaaccatacggaagtcgcttccagttcgacttctgcccttctgttccagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTCGCCCGCAGAGCATCAGTGTGTTAAGGACAGTTTTGAGGCACTCCTCCAGCGCTGCTCCTTGACTGCAACTGGCCTTgtgggtataggtcttcacttcctcaagctctgcactgttcagagccacag #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat #### Sec31b_ID9042_10 --> 0 - 0 Original Alignment TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga Alignment from CESAR TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga Alignment from Spaln_aa2Genome TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga Alignment from Spaln_nt2Genome TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga Alignment from Pairagon TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga Alignment from Exonerate_protein2genome TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga Alignment from Exonerate_coding2genome TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga Alignment from GeneWise TTTGGGGGAAAGCTGGTTACTTTTGGCCTTCCCAGCATCCCTGTCCAGCCAGTGGCACAGGCTTGTTCCCGCCCTGTCTTCATCAGTCAAGTCATCACAGAGTCAGAAGTCCTGACTCGGTCAGTTGTGCTGCAGGAGGCCTTGGGATCTGGAAATCTCCTTAATTATTGTCAGAGCAAGGTTCAGCAAGCATCACTGCCATGCGAGAAGATACTCTGGCAGTTCCTGAAG tttcaacacttggaaatatagcctcttcctttctgttttgctttcgaaagTTTGGGGGAAAGCTGATTACTTTTGGGCTTCCCAGCATTCCCATCCAGCGAGTGGCGCAGGCTTGCTCCCGCCCTGTCCTGATTAGTCAAGTCATCACAGAGTCAGGGGTCCTTGCTCGGTCAGTAGTACTGCAGGAGGCTTTGGGATCTGGGAATCTCCTTAATTATTGTCAGAGCAATGTTCAGCAAGCATCACTGCCTTGTGAAAAGATACTCTGGCAGTTCCTGAAGgtatgtggttaaagaccagctgctctttcccagaaatgaattctcccaga #### Sec31b_ID9050_2 --> 2 - 2 Original Alignment gaACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCag actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagggTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTCGAAACACAGAGGAATTCTTTCACTCTCCAGCaggtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta Alignment from CESAR gaACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCag actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagggTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTCGAAACACAGAGGAATTCTTTCACTCTCCAGCaggtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta Alignment from Spaln_aa2Genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagGGTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTCGAAACACAGAGGAATTCTTTCACTCTCCAGCAGgtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta Alignment from Spaln_nt2Genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagGGTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCTC---ACTCGAAACACAGAGGAATTCTTTCACTCTCCAGCAGgtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta Alignment from Pairagon GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagGGTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCTC---ACTCGAAACACAGAGGAATTCTTTCACTCTCCAGCAGgtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta Alignment from Exonerate_protein2genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagGGTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTCGAAACACAGAGGAATTCTTTCACTCTCCAGCAGgtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta Alignment from Exonerate_coding2genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagGGTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCT---CACTCGAAACACAGAGGAATTCTTTCACTCTCCAGCAGgtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta Alignment from GeneWise GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG actgctgctcatttgctgcctcttcttcaactctaatttttgtttttcagGGTCATCTGCTCAGCATCAAGATTCGTCCTTCAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGATCCTTCTCACTCG---AAACACAGAGGAATTCTTTCACTCTCCAGCAGgtgtggattaggcctacgtgtgggatgtcaggttaggtcttgttggacta #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGtggtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGtggtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag #### Sf1_ID1663_4 --> 1 - 2 Original Alignment gTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaa tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaaggTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACaagtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta Alignment from CESAR gTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACaa tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaaggTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACaagtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta Alignment from Spaln_aa2Genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaagGTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACAAgtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta Alignment from Spaln_nt2Genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaagGTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACAAgtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta Alignment from Pairagon GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaagGTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACAAgtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta Alignment from Exonerate_protein2genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaagGTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACAAgtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta Alignment from Exonerate_coding2genome GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaagGTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACAAgtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta Alignment from GeneWise GTCCCCTTCCCCTGAACCAATCTACAACAGCGAGGGGAAGCGGCTTAACACTCGAGAGTTCCGTACCCGCAAAAAGCTTGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGCTCTCAACCCAGACTTTAAACCACCTGCAGATTACAA tcagagcagtaatgaagtcagagcagccgccttttcctctcctccccaagGTCTCCTTCTTCTGAACCAATCTACAACAGCAAGGGGAAGTGGCTTAACACTTGTGAGCTCCGTACCCACAAAAAGCTGGAAGAGGAGCGGCACACCCTTATTACAGAGATGGTTGGTCTCAACCCAGATTTTAAACCACCTGCAGATTACAAgtgagcagaggactcattggcagggtcctgtgtgggacaaatctcatcta #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aggccagttcaaatgtcctactaatttccctgattttttttctctcccagatCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAggtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aggccagttcaaatgtcctactaatttccctgattttttttctctcccagatCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAggtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg #### Sfxn2_ID9964_2 --> 1 - 2 Original Alignment gATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACag cttaggagtcagggttgggccagtttccttctttttgctattaattacaggATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACaggtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat Alignment from CESAR gATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACag cttaggagtcagggttgggccagtttccttctttttgctattaattacaggATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACaggtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat Alignment from Spaln_aa2Genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG cttaggagtcagggttgggccagtttccttctttttgctattaattacagGATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat Alignment from Spaln_nt2Genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG cttaggagtcagggttgggccagtttccttctttttgctattaattacagGATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat Alignment from Pairagon GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG cttaggagtcagggttgggccagtttccttctttttgctattaattacagGATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat Alignment from Exonerate_protein2genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG cttaggagtcagggttgggccagtttccttctttttgctattaattacagGATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat Alignment from Exonerate_coding2genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG cttaggagtcagggttgggccagtttccttctttttgctattaattacagGATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat Alignment from GeneWise GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG cttaggagtcagggttgggccagtttccttctttttgctattaattacagGATGGGCCTTGTACCACCCGGCACCCAGATGGAGCAGCTGCTATATGCAAAAAAACTTTTTGACTCAACATTCCACCCTGACACTGGGGAGAAAATGAATGTCATTGGACGGATGTCCTTCCAGGTTCCTGGTGGCATGCTGATCACAGGCTTCATGCTCCAGTTCTACAGgtagcgcacgactcttgaagtgatcaaatgggcctacatacaataaatat #### Sfxn2_ID9965_3 --> 1 - 2 Original Alignment gACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCag ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcaggACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCaagtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat Alignment from CESAR gACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCag ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcaggACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCaagtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat Alignment from Spaln_aa2Genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCAAgtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat Alignment from Spaln_nt2Genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCAAgtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat Alignment from Pairagon GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCAAgtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat Alignment from Exonerate_protein2genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCAAgtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat Alignment from Exonerate_coding2genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCAAgtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat Alignment from GeneWise GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG ttaaaatttatgagggctctgtagccgccatgattgttgtgtttcttcagGACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCTTCCCCCACATCTGTCAAgtgggtaagctaagattctctacctctctgggcaacccagctgcttgcat #### Sfxn2_ID9967_5 --> 0 - 2 Original Alignment AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGca agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGGTGGGCCGGTGGGTGCCTTTTGCTGCCATAGCCGCTGCTAACTGTGTGAATATCCCAATGATGCGACAGcagtaagtccggtgggtgccttttgctgccctagccgctgctaactgtgtga Alignment from CESAR AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGca agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGGTGGGCCGGTGGGTGCCTTTTGCTGCCATAGCCGCTGCTAACTGTGTGAATATCCCAATGATGCGACAGcagtaagtccggtgggtgccttttgctgccctagccgctgctaactgtgtga Alignment from Spaln_aa2Genome AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGGTGGGCCGGTGGGTGCCTTTTGCTGCCATAGCCGCTGCTAACTGTGTGAATATCCCAATGATGCGACAGCAgtaagtccggtgggtgccttttgctgccctagccgctgctaactgtgtga Alignment from Spaln_nt2Genome AGAGCCCCACCCTTG GTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCA agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGgtgggccggtgggtgccttttgctgccatagccgctgctaactgtgtgaatatcccaatgatgcgacagcagTAAGTCCGGTGGGTGCCTTTTGCTGCCCTAGCCGCTGCTAACTGTGTGA Alignment from Pairagon AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGGTGGGCCGGTGGGTGCCTTTTGCTGCCATAGCCGCTGCTAACTGTGTGAATATCCCAATGATGCGACAGCAgtaagtccggtgggtgccttttgctgccctagccgctgctaactgtgtga Alignment from Exonerate_protein2genome AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGGTGGGCCGGTGGGTGCCTTTTGCTGCCATAGCCGCTGCTAACTGTGTGAATATCCCAATGATGCGACAGCAgtaagtccggtgggtgccttttgctgccctagccgctgctaactgtgtga Alignment from Exonerate_coding2genome AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGGTGGGCCGGTGGGTGCCTTTTGCTGCCATAGCCGCTGCTAACTGTGTGAATATCCCAATGATGCGACAGCAgtaagtccggtgggtgccttttgctgccctagccgctgctaactgtgtga Alignment from GeneWise AGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGCTAACTGTGTCAATATCCCAATGATGCGACAGCA agccaattgtttgagcttatataactcctcctttgttttgtttcctctagAGAGCCCCACCCTTGGTGGGCCGGTGGGTGCCTTTTGCTGCCATAGCCGCTGCTAACTGTGTGAATATCCCAATGATGCGACAGCAgtaagtccggtgggtgccttttgctgccctagccgctgctaactgtgtga #### Sfxn2_ID9970_8 --> 2 - 0 Original Alignment tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagccCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from CESAR tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagccCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Spaln_aa2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Spaln_nt2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Pairagon TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Exonerate_protein2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from Exonerate_coding2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc Alignment from GeneWise TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tggtcagcagtgtacttagcttttgtcgctttcatttgcctaacttccagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtaagtcgttctccctgtaattcccccacacttctgctgtctgctgacgc #### Sfxn3_ID9290_8 --> 0 - 2 Original Alignment CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCtggtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt Alignment from CESAR CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCtggtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt Alignment from Spaln_aa2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCTGgtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt Alignment from Spaln_nt2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCTGgtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt Alignment from Pairagon CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCTGgtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt Alignment from Exonerate_protein2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCTGgtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt Alignment from Exonerate_coding2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCTGgtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt Alignment from GeneWise CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tgggtaatgaaaaaattcactaggcggccctctgcctgccttctccacagGGCCGTCCCTGGCTGGGGGCACCCCTGCAGGTGGGCCTGGTAGGTTTCTGgtaattttgtaaagggtagtaggggcatacaagaatccctataccatttt #### Sfxn4_ID13348_10 --> 0 - 1 Original Alignment TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTg ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCggtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta Alignment from CESAR TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTg ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCggtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta Alignment from Spaln_aa2Genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCGgtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta Alignment from Spaln_nt2Genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCGgtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta Alignment from Pairagon TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCGgtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta Alignment from Exonerate_protein2genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCGgtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta Alignment from Exonerate_coding2genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCGgtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta Alignment from GeneWise TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgcagtgagactcggttctcttttgaaatagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCCCAAATAACTTTTGGCTTAAGAGAACCTTGCCAGTTGTCTTTCTCGgtaggaaagaagaaggtctggacacatgtagctggtctggcttttcagta #### Sfxn4_ID13349_9 --> 0 - 0 Original Alignment AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca Alignment from CESAR AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca Alignment from Spaln_aa2Genome AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca Alignment from Spaln_nt2Genome AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca Alignment from Pairagon AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca Alignment from Exonerate_protein2genome AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca Alignment from Exonerate_coding2genome AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca Alignment from GeneWise AGTCATGGACCAGTAGAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGA ttgtcaccacaacaactgtttactatgatgaccggcacttttttgtacagAGCCATGGACCAGTAGAGAGAACATTGTTGGGAGCTGGGGTGTCTGTGTCCTCAATTTTCATTGGAgtaactgtttttatacaatattattccaattcatctctgttactatgaca #### Sfxn4_ID13353_5 --> 0 - 1 Original Alignment TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAg aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAggtaagttgctgtccttgttcaggagtaggtggagacatgtggtatattgt Alignment from CESAR TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAg aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAggtaagttgctgtccttgttcaggagtaggtggagacatgtggtatattgt Alignment from Spaln_aa2Genome TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtaagttgctgtccttgttcaggagtaggtggagacatgtggtatattgt Alignment from Spaln_nt2Genome TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtaagttgctgtccttgttcaggagtaggtggagacatgtggtatattgt Alignment from Pairagon TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtaagttgctgtccttgttcaggagtaggtggagacatgtggtatattgt Alignment from Exonerate_protein2genome TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtaagttgctgtccttgttcaggagtaggtggagacatgtggtatattgt Alignment from Exonerate_coding2genome TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCT---TTCCTGCCTGTGACAGCACCCAT aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGGTAAGTTGCTGTCCTTGTTCAGGAGTAGgtggagacatgtggtatattgt Alignment from GeneWise TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccattgttgagcagacgaccacatctctcccacctcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtaagttgctgtccttgttcaggagtaggtggagacatgtggtatattgt #### Sh3pxd2a_ID10167_14 --> 0 - 0 Original Alignment GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG tccataaggcctaaagcataagagataatctctgtctttttcttgtttagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat Alignment from CESAR GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG tccataaggcctaaagcataagagataatctctgtctttttcttgtttagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat Alignment from Spaln_aa2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG tccataaggcctaaagcataagagataatctctgtctttttcttgtttagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat Alignment from Spaln_nt2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG tccataaggcctaaagcataagagataatctctgtctttttcttgtttagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat Alignment from Pairagon GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG tccataaggcctaaagcataagagataatctctgtctttttcttgtttagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat Alignment from Exonerate_protein2genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG tccataaggcctaaagcataagagataatctctgtctttttcttgtttagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat Alignment from Exonerate_coding2genome GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTGGGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGG tccatAAGGCCTAAAGCATAAGAGATAATCTCTGTCTTTTTCTTGTTTAGG-----GGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGcagaggtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat Alignment from GeneWise GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG tccataaggcctaaagcataagagataatctctgtctttttcttgtttagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCTTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATCTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtaatgctcctttgaagcaacatcttgggaatgagttggttagccacaat #### Sh3pxd2a_ID10196_5 --> 0 - 2 Original Alignment GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAga gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAgagtaaaagtggcatgaccaggggacaaatcagatgtctgttaggaggaaag Alignment from CESAR GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAga gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAgagtaaaagtggcatgaccaggggacaaatcagatgtctgttaggaggaaag Alignment from Spaln_aa2Genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAGAgtaaaagtggcatgaccaggggacaaatcagatgtctgttaggaggaaag Alignment from Spaln_nt2Genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAGAgtaaaagtggcatgaccaggggacaaatcagatgtctgttaggaggaaag Alignment from Pairagon GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAGAgtaaaagtggcatgaccaggggacaaatcagatgtctgttaggaggaaag Alignment from Exonerate_protein2genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAGAgtaaaagtggcatgaccaggggacaaatcagatgtctgttaggaggaaag Alignment from Exonerate_coding2genome GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGAAGACTATGGCAGTTCCAAGAGGAAATCAGTG gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAGAGTAAAAGTGGCATGACCAGGGGACAAATCAGatgtctgttaggaggaaag Alignment from GeneWise GCGCTTGTCCGGCTGCCGCCCCACATTTCACAGTGTGACGAAGTCTTCCGGTTCTTTGAGGCACGGCCTGAGGATGTCAACCCTCCAAAAGA gtggtgaccttgctaaaaacccaacaacatactggtcttactatgcctagGCGCTTGTTCGGCTGCCACCCCACGTTTCACAATGTGATGAAGTTTTCCGGTTCTTTGAGGCACGGGCTGAGGATGTCAACCCTCCAAAAGAgtaaaagtggcatgaccaggggacaaatcagatgtctgttaggaggaaag #### Sh3pxd2a_ID10197_4 --> 2 - 0 Original Alignment gcAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcaggcAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct Alignment from CESAR gcAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcaggcAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct Alignment from Spaln_aa2Genome GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcagGCAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct Alignment from Spaln_nt2Genome GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcagGCAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct Alignment from Pairagon GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcagGCAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct Alignment from Exonerate_protein2genome GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcagGCAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct Alignment from Exonerate_coding2genome GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcagGCAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct Alignment from GeneWise GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG tccctgacagcttcagccaaattagccaggccttccatatgtatttgcagGCAAGATCCTCTTCCGGAGAAGCCATATCCGTGATGTAGCTGTGAAGAGACTAAAGCCTATCGATGAGTATTGCAGGgtaagtctgagtatagggcaagaagaaagaggattctagtctcagtttct #### Sh3pxd2a_ID10209_2 --> 0 - 0 Original Alignment GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc Alignment from CESAR GTATACATTATCAACGTG---ACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc Alignment from Spaln_aa2Genome GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc Alignment from Spaln_nt2Genome GTATACATTATCAACGTGA---CCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc Alignment from Pairagon GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc Alignment from Exonerate_protein2genome GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc Alignment from Exonerate_coding2genome GTATACATTATCAAC---GTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc Alignment from GeneWise GTATACATTATCAACGTGACC---TGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTCTTCGACCTGCAG cctgccatgcagtcttggttacccactctgcccagcctttaccctcacagGTATATATTATTAATGTGGTGGCCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTTTTTCGACCTACAGgtgagcagctggctggccactcctatcttggataggttccatagttgctc #### Shoc2_ID11420_6 --> 0 - 0 Original Alignment GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata Alignment from CESAR GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata Alignment from Spaln_aa2Genome GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata Alignment from Spaln_nt2Genome GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata Alignment from Pairagon GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata Alignment from Exonerate_protein2genome GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata Alignment from Exonerate_coding2genome GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata Alignment from GeneWise GTTCTGATCTTATCGAACAACCTTCTAAAGAAGCTGCCCCACGGCCTTGGGAACCTCAGAAAGCTACGAGAGCTGGACCTGGAGGAGAACAAGCTGGAGTCCTTGCCCAATGAGATCGCGTATCTCAAGGATCTGCAG catatttaatattttgaatcacaaagtgacttggtgtgctgtgtttgcagGTCCTAATCCTATCGAACAATCTCCTAAAGAAGCTCCCCCATGGCCTTGGGAATCTCAGAAAGTTACGGGAGTTGGACCTAGAAGAGAACAAGTTGGAGTCCTTACCCAATGAGATTGCATATCTCAAGGATTTGCAAgtaggttcaacaacccagggccaaaagcaatctgtcttaagattttgata #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from GeneWise -----------------------------------------------CAGGACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA GCCAAGTTAACATTGGATGCCATATTATGTGTTCTCACTTTACCCTACAGGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagaaCATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactccctctgcttttctt Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagaaCATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactattttgcttgtttct Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactccctctgcttttctt Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactccctctgcttttctt Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactccctctgcttttctt Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactccctctgcttttctt Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactccctctgcttttctt Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactccctctgcttttctt #### Slc15a3_ID3030_5 --> 0 - 1 Original Alignment ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAggtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta Alignment from CESAR ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAggtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta Alignment from Spaln_aa2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAGgtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta Alignment from Spaln_nt2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGA---TCCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAGgtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta Alignment from Pairagon ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGA---TCCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAGgtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta Alignment from Exonerate_protein2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAGgtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta Alignment from Exonerate_coding2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAGgtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta Alignment from GeneWise ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG aatggtgtgggctctttctgctcagcttaattttatgttgttaattttagATCCCAGAAGCATGGCTTCTATTGGCCAATGTAGCCGTGATCCTGATTCTTATCCCTGTGAAGGAACACTTGATAGATACTCCTCTGCTGCTGCGGTGCAAGCTGCTGCCTTCATCTCTACAGAAAACAGCCCTGGGGATGTTCTTTGGTTTCACCTCCATCATTGTGGCAGgtaagagatgtattctgtgcatctaacatgtgtcagggcttgccaactta #### Slc16a12_ID6975_3 --> 2 - 1 Original Alignment ctCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAg agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagctCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGggtaacctgtagagggctgggaaagggaattccatttacctaacaccctac Alignment from CESAR ctCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAg agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagctCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGggtaacctgtagagggctgggaaagggaattccatttacctaacaccctac Alignment from Spaln_aa2Genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGGgtaacctgtagagggctgggaaagggaattccatttacctaacaccctac Alignment from Spaln_nt2Genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGGgtaacctgtagagggctgggaaagggaattccatttacctaacaccctac Alignment from Pairagon CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGGgtaacctgtagagggctgggaaagggaattccatttacctaacaccctac Alignment from Exonerate_protein2genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGGgtaacctgtagagggctgggaaagggaattccatttacctaacaccctac Alignment from Exonerate_coding2genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGGgtaacctgtagagggctgggaaagggaattccatttacctaacaccctac Alignment from GeneWise CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agtatgcccaaaggcctgctttctcatgattcttagcttttgattggcagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCAGGGATCATGCTGGGTGGCTTGCTGGCATCCACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTCGGAGTTCTTACGGgtaacctgtagagggctgggaaagggaattccatttacctaacaccctac #### Slc16a12_ID6976_2 --> 1 - 1 Original Alignment aTGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTg attcaattatatattcactcatgtcttgtaactccttccgagttcctcagaTGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTggtacgtgatgcattagattgccctctccatttaaaataatagataatgaa Alignment from CESAR aTGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTg attcaattatatattcactcatgtcttgtaactccttccgagttcctcagaTGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTggtacgtgatgcattagattgccctctccatttaaaataatagataatgaa Alignment from Spaln_aa2Genome ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attcaattatatattcactcatgtcttgtaactccttccgagttcctcagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtacgtgatgcattagattgccctctccatttaaaataatagataatgaa Alignment from Spaln_nt2Genome ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attcaattatatattcactcatgtcttgtaactccttccgagttcctcagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtacgtgatgcattagattgccctctccatttaaaataatagataatgaa Alignment from Pairagon ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attcaattatatattcactcatgtcttgtaactccttccgagttcctcagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtacgtgatgcattagattgccctctccatttaaaataatagataatgaa Alignment from Exonerate_protein2genome ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attcaattatatattcactcatgtcttgtaactccttccgagttcctcagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtacgtgatgcattagattgccctctccatttaaaataatagataatgaa Alignment from Exonerate_coding2genome ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attcaattatatattcactcatgtcttgtaactccttccgagttcctcagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtacgtgatgcattagattgccctctccatttaaaataatagataatgaa Alignment from GeneWise ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attcaattatatattcactcatgtcttgtaactccttccgagttcctcagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtacgtgatgcattagattgccctctccatttaaaataatagataatgaa #### Slc18a2_ID12931_2 --> 2 - 2 Original Alignment ttCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACag cgtatttctctaggggattctgattagcagatacggttactcttttccagtcCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACaggtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct Alignment from CESAR ttCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACag cgtatttctctaggggattctgattagcagatacggttactcttttccagtcCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACaggtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct Alignment from Spaln_aa2Genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG cgtatttctctaggggattctgattagcagatacggttactcttttccagTCCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACAGgtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct Alignment from Spaln_nt2Genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG cgtatttctctaggggattctgattagcagatacggttactcttttccagTCCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACAGgtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct Alignment from Pairagon TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG cgtatttctctaggggattctgattagcagatacggttactcttttccagTCCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACAGgtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct Alignment from Exonerate_protein2genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG cgtatttctctaggggattctgattagcagatacggttactcttttccagTCCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACAGgtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct Alignment from Exonerate_coding2genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG cgtatttctctaggggattctgattagcagatacggttactcttttccagTCCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACAGgtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct Alignment from GeneWise TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG cgtatttctctaggggattctgattagcagatacggttactcttttccagTCCCCATTATTCCCAGTTACCTGTACAGCATCAAGCATGAGAAAAATACTACAGAAAACCAGACTGCCAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATCTTCTCATACTACAACAACTCTACAGTGTTCACAGGGAATGCCACCGGAGGCCTTCCAGGGGGGGAGTCACCTAAGGCAACCACCACACAACACACCGTGACCAACACAACTGTCCCTCCGGACTGCCCTAGTGAAGACAAAGACCTTCTGAATGAGAAGGTGCAAGTTGGGCTGCTGTTTGCCTCTAAAGCCACTGTTCAGCTCCTTACTAACCCATTCATAGGGCTTCTGACCAACAGgtaaggtgagtgactaacctggagtctctacacccctgagtcctactgct #### Slc18a2_ID12937_5 --> 2 - 1 Original Alignment ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagggATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGggtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg Alignment from CESAR ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagggATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGggtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg Alignment from Spaln_aa2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg Alignment from Spaln_nt2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg Alignment from Pairagon GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg Alignment from Exonerate_protein2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg Alignment from Exonerate_coding2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg Alignment from GeneWise GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagacagtaacatcgcatctctctgtgtccagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCCATGGGAATTGCTCTTGGGGGCCTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctatggagattgctttggggggcctgggcatcagg #### Slc18a2_ID12938_6 --> 2 - 1 Original Alignment tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagtgGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAggtgcacgatcatggctgtgacctgtgtgagggaatacgtactggccactt Alignment from CESAR tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagtgGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAggtgcacgatcatggctgtgacctgtgtgagggaatacgtactggccactt Alignment from Spaln_aa2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagTGGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtgcacgatcatggctgtgacctgtgtgagggaatacgtactggccactt Alignment from Spaln_nt2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagTGGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtgcacgatcatggctgtgacctgtgtgagggaatacgtactggccactt Alignment from Pairagon TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagTGGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtgcacgatcatggctgtgacctgtgtgagggaatacgtactggccactt Alignment from Exonerate_protein2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagTGGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtgcacgatcatggctgtgacctgtgtgagggaatacgtactggccactt Alignment from Exonerate_coding2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagTGGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtgcacgatcatggctgtgacctgtgtgagggaatacgtactggccactt Alignment from GeneWise TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAGCTATTCAGCTCTTT-- taggtcaatcatctttgaaggctgtcttcagtgcatattattacttctagTGGGGCCACCATTTGGCTGTGTGCTCTATGAGTTTGTG---------GCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGGTGCACGATCATGGCTgtgacctgtgtgagggaatacgtactggccactt #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagctATTCAGCTCTTTGTAATCCAG---TCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagctATTCAGCTCTTTGTAATCCAG---TCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagCTATTCAGCTCTTTGTAATCCAG---TCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagCTATTCAGCTCTTTGTAATCCAG---TCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Pairagon CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagCTATTCAGCTCTTTGTAATCCAG---TCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagCTATTCAGCTCTTTGTAATCCAG---TCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Exonerate_coding2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagCTATTCAGCTCTTTGTAATCCAG---TCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from GeneWise TCAGCT ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagctattcagctctttgtaatccagtcctgtgtactgccagacgtaagaagctgggagtgggaggtaagggccaacaacggacctagGCAAGT #### Slc18a2_ID12941_9 --> 2 - 1 Original Alignment gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttaggcTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGggtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct Alignment from CESAR gcTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGg gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttaggcTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGggtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct Alignment from Spaln_aa2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct Alignment from Spaln_nt2Genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct Alignment from Pairagon GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct Alignment from Exonerate_protein2genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct Alignment from Exonerate_coding2genome GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct Alignment from GeneWise GCTCCATCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGG gaccctcaggatgaaggtcctggcacaccctatctgtaatactcttttagGCTCCATCCGTTTTGCAAACATGGGGATAGCCATACTGGAACCCGCACTACCCATCTGGATGATGGAGACCATGTGTTCCCGAAAGTGGCAGCTGGgtacgtattggttgggtctcatttatttacctgcccctgcatgaccacct #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagaTGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagaTGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from Exonerate_coding2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt Alignment from GeneWise GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggagtaagtattcactcaccaagatgttgctctctctctagATGGCTGTGTGCTCTTCTGGGAATGATAGTAGTAGGGATCAGCATTTTATGTgtaagtaaagatggctagagacgggagacggtgtacttggttccgaatgt #### Slc18a2_ID12946_13 --> 2 - 1 Original Alignment ggATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCg tagcttcgattacactacttctctatacttttctccttcctcttccctagggATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCagtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa Alignment from CESAR ggATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCg tagcttcgattacactacttctctatacttttctccttcctcttccctagggATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCagtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa Alignment from Spaln_aa2Genome GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG tagcttcgattacactacttctctatacttttctccttcctcttccctagGGATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCAgtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa Alignment from Spaln_nt2Genome GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG tagcttcgattacactacttctctatacttttctccttcctcttccctagGGATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCAgtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa Alignment from Pairagon GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG tagcttcgattacactacttctctatacttttctccttcctcttccctagGGATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCAgtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa Alignment from Exonerate_protein2genome GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG tagcttcgattacactacttctctatacttttctccttcctcttccctagGGATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCAgtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa Alignment from Exonerate_coding2genome GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG tagcttcgattacactacttctctatacttttctccttcctcttccctagGGATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCAgtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa Alignment from GeneWise GGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTCTATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCG tagcttcgattacactacttctctatacttttctccttcctcttccctagGGATGGTGGATTCTTCCATGATGCCTATCATGGGATACCTGGTTGACCTGCGGCATGTGTCCATCTATGGAAGTGTGTACGCCATTGCTGATGTTGCCTTCTGCATGGGGTATGCTATCAgtaataacattgcttccaggaaggccttccgtttaaggtggtacatataa #### Slc1a1_ID6164_3 --> 2 - 1 Original Alignment gtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAg ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcaggtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAggtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt Alignment from CESAR gtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAg ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcaggtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAggtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt Alignment from Spaln_aa2Genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt Alignment from Spaln_nt2Genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt Alignment from Pairagon GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt Alignment from Exonerate_protein2genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt Alignment from Exonerate_coding2genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt Alignment from GeneWise GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG ctacctctgcttactgtaagtctcctggccaggtatgcttgctcttgcagGTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGCTTGCGTGCTGTAGTGTATTATTTCTCCACCACCGTCATTGCTGTAATCCTAGgtgagtcttatctctgaatcccttgttctttttttttgccattgtaactt #### Slc1a1_ID6166_5 --> 1 - 0 Original Alignment gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac Alignment from CESAR gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac Alignment from Spaln_aa2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac Alignment from Spaln_nt2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac Alignment from Pairagon GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac Alignment from Exonerate_protein2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac Alignment from Exonerate_coding2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac Alignment from GeneWise GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG caacgcaaggtatgcttcccttacatgctgattcaaagccatttctctagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtaagctcaatagcttatttcctaagttggcccatcaaaacatacagtac #### Slc1a1_ID6173_10 --> 1 - 2 Original Alignment tTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCag aatgaggccttgaatccttagacttaattttggctttcccttctctccagtTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCaggtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt Alignment from CESAR tTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCag aatgaggccttgaatccttagacttaattttggctttcccttctctccagtTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCaggtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt Alignment from Spaln_aa2Genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG aatgaggccttgaatccttagacttaattttggctttcccttctctccagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCAGgtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt Alignment from Spaln_nt2Genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG aatgaggccttgaatccttagacttaattttggctttcccttctctccagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCAGgtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt Alignment from Pairagon TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG aatgaggccttgaatccttagacttaattttggctttcccttctctccagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCAGgtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt Alignment from Exonerate_protein2genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG aatgaggccttgaatccttagacttaattttggctttcccttctctccagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCAGgtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt Alignment from Exonerate_coding2genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG aatgaggccttgaatccttagacttaattttggctttcccttctctccagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCAGgtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt Alignment from GeneWise TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG aatgaggccttgaatccttagacttaattttggctttcccttctctccagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCTGTGTTTATAGCACAATTGAAAGGCTTGGACTTAAGCATTGGGCGGATAGTGACCATCAGgtaactctcaatgggcccctcactacatctcaacatgcaactcctggttt #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga #### Slc22a19_ID2205_8 --> 2 - 2 Original Alignment aaATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCag agagttatcttactttttcaccatactattcttttcaattctgtaaccagaaATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCaggtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg Alignment from CESAR aaATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCag agagttatcttactttttcaccatactattcttttcaattctgtaaccagaaATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCaggtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg Alignment from Spaln_aa2Genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatcttactttttcaccatactattcttttcaattctgtaaccagAAATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCAGgtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg Alignment from Spaln_nt2Genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatcttactttttcaccatactattcttttcaattctgtaaccagAAATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCAGgtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg Alignment from Pairagon AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatcttactttttcaccatactattcttttcaattctgtaaccagAAATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCAGgtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg Alignment from Exonerate_protein2genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatcttactttttcaccatactattcttttcaattctgtaaccagAAATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCAGgtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg Alignment from Exonerate_coding2genome AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatcttactttttcaccatactattcttttcaattctgtaaccagAAATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCAGgtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg Alignment from GeneWise AAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAATTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAG agagttatcttactttttcaccatactattcttttcaattctgtaaccagAAATGCAGATCCTGCGGGGGTTTTTGTCAACATTAGGAGGAGCAATCTCTTCTGCCTCTATAACAAGTACTCTTGTACATGCAAATGAGGTTTTCCCCACCATAATCAGgtaagacctggggtgatagcagagtttcttcggttcaatcacttttgctg #### Slc22a19_ID2207_6 --> 0 - 2 Original Alignment GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGag tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGaggtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt Alignment from CESAR GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGag tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGaggtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt Alignment from Spaln_aa2Genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGAGgtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt Alignment from Spaln_nt2Genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGAGgtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt Alignment from Pairagon GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGAGgtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt Alignment from Exonerate_protein2genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGAGgtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt Alignment from Exonerate_coding2genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGAGgtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt Alignment from GeneWise GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG tgccacattgcttacccccttatggcagtgacgcctgtgcctctccacagGTTGTAAAAGCTATCATGAAGGAGGAGCTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACCCCTAACCTTCAAAAGCAAATCTGCCTCCTATCATTTGTGAGgtgaggtttgcactgactgatcaattcctcaaggctttaataagacactt #### Slc22a20_ID1349_4 --> 2 - 2 Original Alignment ttGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTtg aattagctatgttgctgcagacagctactaatattttcttgttttttaagttGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCtggtgagtagcaagaaggtgttgagacgggcatgtatctgatgggtgaggtg Alignment from CESAR ttGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTtg aattagctatgttgctgcagacagctactaatattttcttgttttttaagttGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCtggtgagtagcaagaaggtgttgagacgggcatgtatctgatgggtgaggtg Alignment from Spaln_aa2Genome TTGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTTG aattagctatgttgctgcagacagctactaatattttcttgttttttaagTTGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCTGgtgagtagcaagaaggtgttgagacgggcatgtatctgatgggtgaggtg Alignment from Spaln_nt2Genome TTGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTTG aattagctatgttgctgcagacagctactaatattttcttgttttttaagTTGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCTGgtgagtagcaagaaggtgttgagacgggcatgtatctgatgggtgaggtg Alignment from Pairagon TTGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTTG aattagctatgttgctgcagacagctactaatattttcttgttttttaagTTGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCTGgtgagtagcaagaaggtgttgagacgggcatgtatctgatgggtgaggtg Alignment from Exonerate_protein2genome TTGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTTGGTGGCTTCCAGAGTCATC aattagctatgttgctgcagacagctactaatattttcttgttttttaagTTGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCTGGTGAGTAGCAAGAAGGTGttgagacgggcatgtatctgatgggtgaggtg Alignment from Exonerate_coding2genome TTGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTTGGTGGCTTCCAGAGTCATC aattagctatgttgctgcagacagctactaatattttcttgttttttaagTTGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCTGGTGAGTAGCAAGAAGGTGttgagacgggcatgtatctgatgggtgaggtg Alignment from GeneWise TTGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCTTGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTCTGCTCCTTTTCTGGTCTTTTTCCTCTATTCTTG aattagctatgttgctgcagacagctactaatattttcttgttttttaagTTGTAGAATGGATGCCAACCAGAGGTCGTACAGTAGCAGGCATATTATTGGGTTTCTCCTTCACTTTGGGTCAGCTCATCCTGGCTGGTGTAGCATACTTGATCCGGTCTTGGCGGTGGCTGCAGTTTGCTGTTTCTGCGCCGTTTCTGGTCTTTTTCCTCTATTCCTGgtgagtagcaagaaggtgttgagacgggcatgtatctgatgggtgaggtg #### Slc22a20_ID1350_3 --> 1 - 1 Original Alignment gTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGg ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcaggTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGggtgaggggctgcagtcacataacaagagatttacaggatcacattatggt Alignment from CESAR gTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGg ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcaggTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGggtgaggggctgcagtcacataacaagagatttacaggatcacattatggt Alignment from Spaln_aa2Genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcagGTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGGgtgaggggctgcagtcacataacaagagatttacaggatcacattatggt Alignment from Spaln_nt2Genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcagGTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGGgtgaggggctgcagtcacataacaagagatttacaggatcacattatggt Alignment from Pairagon GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcagGTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGGgtgaggggctgcagtcacataacaagagatttacaggatcacattatggt Alignment from Exonerate_protein2genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcagGTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGGgtgaggggctgcagtcacataacaagagatttacaggatcacattatggt Alignment from Exonerate_coding2genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcagGTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGGgtgaggggctgcagtcacataacaagagatttacaggatcacattatggt Alignment from GeneWise GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ttcaaacaaggtttcttggcctcttagtacttctgctctgccccctgcagGTTAGGCCACAAGGCCCCATTGGTGTGGTTGTACTTGCAGCTGGCAGTTTCAGGGGCTGCCACAGCATATGTTGGCTCTTTCAGTGCATACTGTGTCTTCCGGTTCCTGATGGGCATGACCTTCTCTGGCATCATCCTCAACTCCCTCTCCTTGGgtgaggggctgcagtcacataacaagagatttacaggatcacattatggt #### Slc22a27_ID2230_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggtttgtattttgactcaatcagacctccctgccagggaacctatctagct Alignment from CESAR aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggtttgtattttgactcaatcagacctccctgccagggaacctatctagct Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtttgtattttgactcaatcagacctccctgccagggaacctatctagct Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtttgtattttgactcaatcagacctccctgccagggaacctatctagct Alignment from Pairagon AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtttgtattttgactcaatcagacctccctgccagggaacctatctagct Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtttgtattttgactcaatcagacctccctgccagggaacctatctagct Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtttgtattttgactcaatcagacctccctgccagggaacctatctagct Alignment from GeneWise AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tattacagccaagcttgactaaccactacctttcatgtttgaaatcgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtttgtattttgactcaatcagacctccctgccagggaacctatctagct #### Slc22a27_ID2235_3 --> 1 - 1 Original Alignment gCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCa tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcaggCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCagtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac Alignment from CESAR gCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCa tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcaggCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCagtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac Alignment from Spaln_aa2Genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcagGCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCAgtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac Alignment from Spaln_nt2Genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcagGCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCAgtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac Alignment from Pairagon GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcagGCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCAgtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac Alignment from Exonerate_protein2genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcagGCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCAgtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac Alignment from Exonerate_coding2genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcagGCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCAgtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac Alignment from GeneWise GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA tagcatcaagtccttttgtttactcacaagactatcttccctcctgtcagGCTTGGGAGGAAGCTCATTTTAACATGTGCTTTATTGCAATTTGCCATCAGTGAAACCTGTGTTGCTTTTGCACCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCAAATTAGTAAATAGTCACTCACTCAgtaattggaacccaaattagcaaacattcactcacttagtaagtaaagac #### Slc22a28_ID2243_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAag tactcaataaaagcttaactaatccccaaacctgatattccctcccatagaaATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAaagtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact Alignment from CESAR aaATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAag tactcaataaaagcttaactaatccccaaacctgatattccctcccatagaaATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAaagtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaactaatccccaaacctgatattccctcccatagAAATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAAAgtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaactaatccccaaacctgatattccctcccatagAAATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAAAgtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact Alignment from Pairagon AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaactaatccccaaacctgatattccctcccatagAAATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAAAgtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaactaatccccaaacctgatattccctcccatagAAATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAAAgtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaactaatccccaaacctgatattccctcccatagAAATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAAAgtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact Alignment from GeneWise AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaactaatccccaaacctgatattccctcccatagAAATGCAGACCCTGCGAATTATTGTGGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTCCATATAAATGAGTTACTTCCAACCACTTTAAAgtgagtgtgtcaaagccagtttccccattcatttcattcatgtaaatact #### Slc22a28_ID2249_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACag atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACaggtatgagtgttttaatctcacacctattctctatggcttttagaagcttc Alignment from CESAR TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACag atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACaggtatgagtgttttaatctcacacctattctctatggcttttagaagcttc Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACAGgtatgagtgttttaatctcacacctattctctatggcttttagaagcttc Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACAGgtatgagtgttttaatctcacacctattctctatggcttttagaagcttc Alignment from Pairagon TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACAGgtatgagtgttttaatctcacacctattctctatggcttttagaagcttc Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACAGgtatgagtgttttaatctcacacctattctctatggcttttagaagcttc Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACAGgtatgagtgttttaatctcacacctattctctatggcttttagaagcttc Alignment from GeneWise TGGGACCTGGTGTGTGAATCTCAGGCACTTAATTCTGTTGCTAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGCCATTTGTCAGACAG atggccctgggtcacattagttttggatcatctggattttccccttacagTGGGACCTGGTATGTAAATCTAAAGCACTTAACTCCATTGCCAAATTTTCATTCATGATTGGCCTATTTATAGGGGCTATCATATGTGGTCATTTGTCAGACAGgtatgagtgttttaatctcacacctattctctatggcttttagaagcttc #### Slc22a29_ID2258_5 --> 1 - 0 Original Alignment gTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcaggTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg Alignment from CESAR gTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcaggTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg Alignment from Spaln_aa2Genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcagGTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg Alignment from Spaln_nt2Genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcagGTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg Alignment from Pairagon GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcagGTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg Alignment from Exonerate_protein2genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcagGTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg Alignment from Exonerate_coding2genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcagGTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg Alignment from GeneWise GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG ttgacattgaccaagtaagaattagctcttaacatccattttctgtgcagGTGGCTTTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAGAATTCTGGAGACCTGACCATGGAGgtaaaaatgttttaatgacataaaggaaatgcatgcttaacatttgtatg #### Slc22a6_ID2282_3 --> 1 - 1 Original Alignment gCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAa ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctaggCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAagtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta Alignment from CESAR gCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAa ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctaggCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAagtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta Alignment from Spaln_aa2Genome GCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAA ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctagGCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAAgtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta Alignment from Spaln_nt2Genome GCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAA ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctagGCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAAgtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta Alignment from Pairagon GCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAA ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctagGCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAAgtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta Alignment from Exonerate_protein2genome GCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAA ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctagGCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAAgtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta Alignment from Exonerate_coding2genome GCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAA ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctagGCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAAgtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta Alignment from GeneWise GCTGGGCCGTCGGAAGGTGCTGATCTTGAACTACCTGCAAACAGCTGTGTCGGGAACCTGTGCAGCCTATGCACCCAACTATACTGTCTACTGCATTTTCCGGCTCCTCTCGGGCATGTCTTTGGCTAGCATTGCAATCAACTGCATGACACTAA ttctgtctagctcattctggcccctgaccatcctgtttgtctgcacctagGCTGGGCCGTCGGAAGGTGTTGATCTTAAACTACCTGCAGACAGCTGTGTCAGGAACTTGTGCAGCCTATGCTCCCAACTATACTGTCTACTGTATCTTCCGGCTCCTCTCAGGCATGTCATTGGCTAGCATTGCTATCAACTGTATGACACTAAgtgagaatagtctcatgtccccctcaacaccaagtcctgctggcattcta #### Slc22a6_ID2285_6 --> 0 - 2 Original Alignment GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGtg caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGtggtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg Alignment from CESAR GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGtg caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGtggtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg Alignment from Spaln_aa2Genome GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTG caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTGgtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg Alignment from Spaln_nt2Genome GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTG caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTGgtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg Alignment from Pairagon GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTG caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTGgtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg Alignment from Exonerate_protein2genome GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTG caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTGgtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg Alignment from Exonerate_coding2genome GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTG caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTGgtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg Alignment from GeneWise GTGCTCCAGACCAGCCTGCAGAAGGAACTGACTCTAAACAAAGGCCAGGCCTCCGCCATGGAGCTGCTGCGCTGCCCCACGCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTG caaggttctcttaggaaatatgcagacagctgagaccgttttctcctcagGTCCTTCAGACCAGCCTACAGAAGGAACTTACCCTAAACAAAGGCCAGGCCTCTGCCATGGAGCTGGTGCGCTGCCCCACCCTTCGGCGCCTCTTCCTCTGCCTCTCTATGCTGTGgtgagttctgtcagacacactaatggaaaaatgggctgaccaaaaagatg #### Slc22a6_ID2286_7 --> 1 - 1 Original Alignment gTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGg gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcaggTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGggtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt Alignment from CESAR gTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGg gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcaggTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGggtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt Alignment from Spaln_aa2Genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcagGTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGGgtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt Alignment from Spaln_nt2Genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcagGTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGGgtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt Alignment from Pairagon GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcagGTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGGgtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt Alignment from Exonerate_protein2genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcagGTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGGgtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt Alignment from Exonerate_coding2genome GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcagGTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGGgtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt Alignment from GeneWise GTTTGCCACTAGCTTTGCCTACTACGGGCTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTTATCCAGGTGATTTTCGGCGCTGTGGACCTGCCTGCCAAGTTTGTGTGCTTCCTAGTCATCAATTCCATGGGCCGCCGGCCTGCACAGTTGGCCTCCCTGCTGCTGGCAGGCATCTGTATCCTAGTGAATGGCATAATACCGAGGG gccagtcccatcaccttttctcttgtcaccaccccgtctcctgtttgcagGTTTGCCACTAGCTTTGCCTACTATGGGGTGGTCATGGACCTGCAGGGCTTTGGGGTCAGCATGTACCTCATTCAGGTGATCTTTGGTGCTGTGGACCTCCCTGCTAAGTTTGTGCACTTCCTGGTCATCAATTTCATGGGCTGCCGGCCTGCACAGCTGGCCTCCCTACTGCTGGCAGGCATCTGTATTCTAGTGAATGGCATAATACCAAGGGgtatgtacttgccagtctctcaggtctcagtgccacccacccaacccctt #### Slc22a8_ID2270_3 --> 1 - 1 Original Alignment gTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCTG---AGCACCATTATCTTGa actgtcagatacctagggttagcctgccccaccccccattgttttgttaggTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGagtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct Alignment from CESAR gTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCTG---AGCACCATTATCTTGa actgtcagatacctagggttagcctgccccaccccccattgttttgttaggTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGagtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct Alignment from Spaln_aa2Genome GTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCTG---AGCACCATTATCTTGA actgtcagatacctagggttagcctgccccaccccccattgttttgttagGTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGAgtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct Alignment from Spaln_nt2Genome GTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCTGAG---CACCATTATCTTGA actgtcagatacctagggttagcctgccccaccccccattgttttgttagGTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGAgtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct Alignment from Pairagon GTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCT---GAGCACCATTATCTTGA actgtcagatacctagggttagcctgccccaccccccattgttttgttagGTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGAgtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct Alignment from Exonerate_protein2genome GTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCTG---AGCACCATTATCTTGA actgtcagatacctagggttagcctgccccaccccccattgttttgttagGTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGAgtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct Alignment from Exonerate_coding2genome GTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCTG---AGCACCATTATCTTGA actgtcagatacctagggttagcctgccccaccccccattgttttgttagGTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGAgtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct Alignment from GeneWise GTTTGGCCGCAAGCCCATCCTGACCTGGAGCTATCTCTTGCTGGCAGCCAGTGGCTCCAGTGCTGCCTTCAGCCCCAGCCTCACTGTCTATATGATCTTCCGATTCCTGTGTGGCTGCAGCATCTCGGGCATTTCTCTG---AGCACCATTATCTTGA actgtcagatacctagggttagcctgccccaccccccattgttttgttagGTTTGGCCACAAGCCCATCCTTACCTGGAGCTATCTCTTGCTGACTGCCAGTGGTTGCAGTGGTGTCTTTAGCCCCAGCCTTACCATCTATATGCTCTTCCGATTCCTGTGTGGCTGCAGCATCTCAGGCATTTCTCTAAGAAGCACGATTATTCTGAgtaaagcaccatggtagccggaagaggcaagggttaactgagcggcagct #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacaaaggagcagcactgggagacttggtatgttttcccttttctgtagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtaatgtgctgcatggtttaggttatgcaccactttaacatctaaaaaat #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaattgggacttccctgactactcagatgccatgtctttctttcctagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatgagcctgggataatgcacagcatggaacaggggggccaggggaggc #### Slc29a2_ID797_11 --> 0 - 2 Original Alignment CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCag ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGaggtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct Alignment from CESAR CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCag ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGaggtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct Alignment from Spaln_aa2Genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGAGgtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct Alignment from Spaln_nt2Genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGAGgtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct Alignment from Pairagon CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGAGgtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct Alignment from Exonerate_protein2genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGAGgtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct Alignment from Exonerate_coding2genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGAGgtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct Alignment from GeneWise CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG ggcctcctaccaaactgcatggcccatagtaagtttgtgttttatttcagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTCGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACACCCGACTGCCAATCATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTACTTGGTGTCTCTCACCATGTGCCTGTCACCGAGgtatccgaggtagaaggtcgggggttgggcatggtcaagacctagctcct #### Slc35g1_ID7589_2 --> 2 - 2 Original Alignment aaGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAaa tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagaaGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAaagtaggcacttctcagagtatttgcttaagctaggatcattggattatttt Alignment from CESAR aaGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAaa tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagaaGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAaagtaggcacttctcagagtatttgcttaagctaggatcattggattatttt Alignment from Spaln_aa2Genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtaggcacttctcagagtatttgcttaagctaggatcattggattatttt Alignment from Spaln_nt2Genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtaggcacttctcagagtatttgcttaagctaggatcattggattatttt Alignment from Pairagon AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtaggcacttctcagagtatttgcttaagctaggatcattggattatttt Alignment from Exonerate_protein2genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtaggcacttctcagagtatttgcttaagctaggatcattggattatttt Alignment from Exonerate_coding2genome AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtaggcacttctcagagtatttgcttaagctaggatcattggattatttt Alignment from GeneWise AAGCCAAGAAGAAAGCACCCTGCCCCGGACTTGGCTTGTTTTACACGGTGTTGTCTGCCTTCCTTTTCTCAGTGGCCTCTTTATTTGTTAAAAAAGTGCAAGGCGTCCATGCTGTAGAGATCAGTGCGTTTCGATGCGTGGTCCAAATGCTAGTTATTATCCCTTGCTTAATATACAGAAA tggcaatacaagcttatgataagggctaacgttgttgttttcttttgcagAAGCCAAGAAGAAAGCACCCTGCCCTGGACTCGGCTTGTTTTACATAGTGTTGTCTGCCTTTCTTTTCTCAGTCGCCTCTTTATTTATTAAAAAAGTGCAAGGTGTCCACGCTGTAGAGATCAGTGCATTTCGATGTGTGGTCCAAATGCTAGTTATCATCCCTTGCTTAATATACAGAAAgtaggcacttctcagagtatttgcttaagctaggatcattggattatttt #### Slc3a2_ID2306_3 --> 2 - 1 Original Alignment gtCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGa aggctgcaggcatttaatttcctattgtgagacccttccttccctttcaggtCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGagtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta Alignment from CESAR gtCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGa aggctgcaggcatttaatttcctattgtgagacccttccttccctttcaggtCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGagtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta Alignment from Spaln_aa2Genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaatttcctattgtgagacccttccttccctttcagGTCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGAgtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta Alignment from Spaln_nt2Genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaatttcctattgtgagacccttccttccctttcagGTCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGAgtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta Alignment from Pairagon GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaatttcctattgtgagacccttccttccctttcagGTCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGAgtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta Alignment from Exonerate_protein2genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaatttcctattgtgagacccttccttccctttcagGTCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGAgtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta Alignment from Exonerate_coding2genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaatttcctattgtgagacccttccttccctttcagGTCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGAgtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta Alignment from GeneWise GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaatttcctattgtgagacccttccttccctttcagGTCTGAAGAGCCATCTGGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCATCCACAAGAACCAGAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCCCAGGAAGATTTTAAGGACCTTTTACAAAGTGCCAAGAAAAGGAgtaaggctctggaaggaactgaaaaggtttggtttggctcagttttctta #### Slit1_ID8205_33 --> 0 - 2 Original Alignment GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACag gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACaggtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga Alignment from CESAR GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACag gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACaggtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga Alignment from Spaln_aa2Genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACAGgtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga Alignment from Spaln_nt2Genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACAGgtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga Alignment from Pairagon GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACAGgtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga Alignment from Exonerate_protein2genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACAGgtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga Alignment from Exonerate_coding2genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACAGgtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga Alignment from GeneWise GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG gctgtttttgtgaggggtggcatagtagactcgatctgctgttctaatagGTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCATATTGCAGTTGAGCTGTACCAGGAACATGTCCGTGTGAGTTATGACCCAGGCAGCTACCCCACCTCTGCTATCTACAGgtaagtatttttcaggctatcacttttcaattatggcgtgccagggtgga #### Slit1_ID8218_21 --> 2 - 2 Original Alignment gcCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAAct ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcaggcCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAActgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta Alignment from CESAR gcCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAAct ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcaggcCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAActgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta Alignment from Spaln_aa2Genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcagGCCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACTgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta Alignment from Spaln_nt2Genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcagGCCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACTgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta Alignment from Pairagon GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcagGCCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACTgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta Alignment from Exonerate_protein2genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcagGCCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACTgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta Alignment from Exonerate_coding2genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcagGCCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACTgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta Alignment from GeneWise GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT ggatgagacactcactcctgtcaaggattttatcaatctgatcttttcagGCCAGGAGGAGGTAGGCTGCCTACCCCGCCCTCAATGCCCTCAGGAGTGTGCTTGCCTGGATTCAGTGATCCGCTGTAGTAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACTgtcagtagtccaagattataatacagctgtggtctctacaatgaatccta #### Slit1_ID8219_20 --> 1 - 1 Original Alignment aAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAg ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagtAATCTCCTGGTC---CCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAggtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg Alignment from CESAR aAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAg ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagtAATCTCCTGGTC---CCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAggtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg Alignment from Spaln_aa2Genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagTAATCTCCTGGTC---CCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAGgtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg Alignment from Spaln_nt2Genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagTAATCTCCTGG---TCCCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAGgtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg Alignment from Pairagon AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagTAATCTCCTGGT---CCCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAGgtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg Alignment from Exonerate_protein2genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagTAATCTCCTGGTC---CCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAGgtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg Alignment from Exonerate_coding2genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagTAATCTCCTGGTC---CCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAGgtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg Alignment from GeneWise AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG ccacgacaaatggaaagtgccttcaggaccttctactgttttatcgttagTAATCTCCTGGTC---CCTTTCAACTGCAACTGTCATCTGTCATGGCTAGGTGACTGGCTACGGAAGAGGAAGATCGTGACAGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCGGGACCTCAGATGTGAGGAAGgtaaattgtagagcatgcagtagggacaggacagcttcgtgaggggctgg #### Slit1_ID8225_14 --> 1 - 1 Original Alignment gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccaggCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggttggtagcatctgcccatccctaggggatcaggagtaaataatttatat Alignment from CESAR gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccaggCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggttggtagcatctgcccatccctaggggatcaggagtaaataatttatat Alignment from Spaln_aa2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccagGCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgttggtagcatctgcccatccctaggggatcaggagtaaataatttatat Alignment from Spaln_nt2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccagGCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgttggtagcatctgcccatccctaggggatcaggagtaaataatttatat Alignment from Pairagon GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccagGCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgttggtagcatctgcccatccctaggggatcaggagtaaataatttatat Alignment from Exonerate_protein2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccagGCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgttggtagcatctgcccatccctaggggatcaggagtaaataatttatat Alignment from Exonerate_coding2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccagGCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgttggtagcatctgcccatccctaggggatcaggagtaaataatttatat Alignment from GeneWise GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGCC-- gacaggacacccacactagagtttctgagtgctgtctttgtcttgtccagGCATCTAGCCCAGAATCCTTTCATCTGTGATTGTAACCTTAAGTGGTTGGCGGATTTCCTACACACCAACCCCATGAAGACAACTGGTGCCCGATGTGCCAGCCCCTGGCGCCTCTCCAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGGTTGgtagcatctgcccatccctaggggatcaggagtaaataatttatat #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagaCAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTctgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagaCAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTctgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg Alignment from Exonerate_coding2genome gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagacagctggacaagaacaggatcagctgcatcaaggaaggggccttccgtgccctacgcgggttggaggttctgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtccaagcctctccttgagcaacacttccagctcttttctttgcccacagACAGCTGGACAAGAACAGGATCAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtaagtagaatctagggagggcttggttggggagtcgatactgttcaagg #### Slk_ID10247_3 --> 0 - 1 Original Alignment ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTagtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc Alignment from CESAR ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTagtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc Alignment from Spaln_aa2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTAgtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc Alignment from Spaln_nt2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTAgtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc Alignment from Pairagon ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTAgtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc Alignment from Exonerate_protein2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTAgtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc Alignment from Exonerate_coding2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTAgtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc Alignment from GeneWise ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG taaagtgccaaaagctggtgttcccactcagctttgttttccttttgcagATCCTCATTGAATTCTGTGCAGGGGGAGCAGTCGATGCCGTGATGCTTAgtgagtatctcagctcagttttctctctaccttgcttaccacatttgtcc #### Slk_ID10254_10 --> 0 - 2 Original Alignment GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCag tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCaggtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt Alignment from CESAR GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCag tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCaggtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt Alignment from Spaln_aa2Genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCAGgtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt Alignment from Spaln_nt2Genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCAGgtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt Alignment from Pairagon GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCAGgtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt Alignment from Exonerate_protein2genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCAGgtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt Alignment from Exonerate_coding2genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCAGgtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt Alignment from GeneWise GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaagggggatttttacacaaagcctgaccgtgtcttggctcctccccagGAGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGCGCTTTCTCAGgtgagtgagaaagggtagataatccacatcagttcttacatctgtgctgt #### Slk_ID10263_15 --> 2 - 0 Original Alignment ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagctCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac Alignment from CESAR ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagctCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac Alignment from Spaln_aa2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac Alignment from Spaln_nt2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac Alignment from Pairagon CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac Alignment from Exonerate_protein2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac Alignment from Exonerate_coding2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac Alignment from GeneWise CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaaaaccaaaagacataatgtacattttaaatttaaagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAGAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgaaagggatttctctgctttgtagattgcacttctaaaggttac #### Smarca2_ID5724_8 --> 0 - 0 Original Alignment GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt Alignment from CESAR GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt Alignment from Spaln_aa2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt Alignment from Spaln_nt2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt Alignment from Pairagon GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt Alignment from Exonerate_protein2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt Alignment from Exonerate_coding2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt Alignment from GeneWise GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG taaaggtataagtatcagtatcatactgttattctctcttgtttgaatagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCCTACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAAAAGAAGAAGAGGAGGAGGAGGAAGAAGgtatgtttcaaccttcctctatttggatgaggaagaacctgtacctctgt #### Smarca2_ID5731_13 --> 1 - 0 Original Alignment gACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccaggACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc Alignment from CESAR gACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccaggACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc Alignment from Spaln_aa2Genome GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccagGACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc Alignment from Spaln_nt2Genome GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccagGACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc Alignment from Pairagon GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccagGACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc Alignment from Exonerate_protein2genome GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccagGACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc Alignment from Exonerate_coding2genome GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccagGACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc Alignment from GeneWise GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAG acagactaaacataactctctctgtagacaatcatttcttctctccccagGACTGCGAAGCAGGATGTGGACGACCAATACAGCATGCAGTACAGTGCAAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCAGAGAGGGTGGAGAAGCAGTCTGCCCTTCTCATTAATGGCACCCTAGAGCATTACCAAgtaagtgacgtctgtgtccccatagtgcacctcaacctccatacactccc #### Smarca2_ID5732_14 --> 0 - 2 Original Alignment CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGtcgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt Alignment from CESAR CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGtcgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt Alignment from Spaln_aa2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt Alignment from Spaln_nt2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt Alignment from Pairagon CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt Alignment from Exonerate_protein2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt Alignment from Exonerate_coding2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt Alignment from GeneWise CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC ggactacctgtttggaccttgacaattgtttccctctctctccatgccagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCCTCATCCCGCTGTCgtgagcacaccagaagcagagaacctgaagtgatgcgttgttcatagctt #### Smarca2_ID5735_16 --> 0 - 0 Original Alignment GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag Alignment from CESAR GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag Alignment from Spaln_aa2Genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag Alignment from Spaln_nt2Genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag Alignment from Pairagon GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag Alignment from Exonerate_protein2genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag Alignment from Exonerate_coding2genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag Alignment from GeneWise GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaaccttgtgattccagtgggtatttgtattttaacttgtctttttcagGGTACCCCTGCGATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTCACCACTTATGAGTACATTATAAAAGACAAGCACATTCTTGCGAAGgtaactcttttgtttttttagtcctttttttacccttaattttggaccag #### Smarca2_ID5742_19 --> 0 - 0 Original Alignment GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg Alignment from CESAR GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg Alignment from Spaln_aa2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg Alignment from Spaln_nt2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg Alignment from Pairagon GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg Alignment from Exonerate_protein2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg Alignment from Exonerate_coding2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg Alignment from GeneWise GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tcaagtcagcccctctctcttacttactttgatatttgtgtatggtgcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaaagttaggatgtaggacactcaggcagtgcctgtgacagctttgtgg #### Smarca2_ID5746_23 --> 2 - 0 Original Alignment gcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattaggcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca Alignment from CESAR gcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattaggcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca Alignment from Spaln_aa2Genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca Alignment from Spaln_nt2Genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca Alignment from Pairagon GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca Alignment from Exonerate_protein2genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca Alignment from Exonerate_coding2genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca Alignment from GeneWise GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatggaattaattagcaaaattcttttccttctcactcatattagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaaggtgccaagaagggaggaggggagattgtcctgtacattcttccca #### Smarca2_ID5758_27 --> 0 - 2 Original Alignment GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaaagccctgactacttccttgctaccaagtcttggagcattttagatt Alignment from CESAR GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaaagccctgactacttccttgctaccaagtcttggagcattttagatt Alignment from Spaln_aa2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactacttccttgctaccaagtcttggagcattttagatt Alignment from Spaln_nt2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactacttccttgctaccaagtcttggagcattttagatt Alignment from Pairagon GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactacttccttgctaccaagtcttggagcattttagatt Alignment from Exonerate_protein2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactacttccttgctaccaagtcttggagcattttagatt Alignment from Exonerate_coding2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactacttccttgctaccaagtcttggagcattttagatt Alignment from GeneWise GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tcatttgccttacttaccttattctttcatgaatgctgtgtcatctctagGCCATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAGAGGAAAAGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaaagccctgactacttccttgctaccaagtcttggagcattttagatt #### Smc3_ID11314_2 --> 0 - 1 Original Alignment GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCg ggttgccctagtagtgcttcctttttttatgacattctctttctttatagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTggtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat Alignment from CESAR GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCg ggttgccctagtagtgcttcctttttttatgacattctctttctttatagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTggtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat Alignment from Spaln_aa2Genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG ggttgccctagtagtgcttcctttttttatgacattctctttctttatagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTGgtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat Alignment from Spaln_nt2Genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG ggttgccctagtagtgcttcctttttttatgacattctctttctttatagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTGgtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat Alignment from Pairagon GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG ggttgccctagtagtgcttcctttttttatgacattctctttctttatagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTGgtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat Alignment from Exonerate_protein2genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG ggttgccctagtagtgcttcctttttttatgacattctctttctttatagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTGgtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat Alignment from Exonerate_coding2genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG ggttgccctagtagtgcttcctttttttatgacattctctttctttatagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTGgtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat Alignment from GeneWise TACATCAAGCAGGTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG ggttgccctagtagtgcttcctttttttatgacattctctttctttatag------------GTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACATAATGTCATTGgtgagtatgtgttcttaatctacattgttaggcttagaattgccactgat #### Smc3_ID11317_5 --> 0 - 0 Original Alignment GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg Alignment from CESAR GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg Alignment from Spaln_aa2Genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg Alignment from Spaln_nt2Genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg Alignment from Pairagon GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg Alignment from Exonerate_protein2genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg Alignment from Exonerate_coding2genome GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg Alignment from GeneWise GAGGGTACAGGTCCTCGTGTTATTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCA gtatcacttagctcacaaataccctactcctcaaaattttctttccaaagGAAGGCACAGGTCCTCATGTTATTTCTGCTTTTGTGGAAATAATTTTTGATAATTCAGATAACCGGCTACTAgtaagtgagagttaatgtctttttaggtgtgttgaggattttatgcaatg #### Smc3_ID11319_7 --> 1 - 0 Original Alignment gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacaggAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa Alignment from CESAR gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacaggAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa Alignment from Spaln_aa2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa Alignment from Spaln_nt2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa Alignment from Pairagon GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa Alignment from Exonerate_protein2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa Alignment from Exonerate_coding2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa Alignment from GeneWise GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG ttggatcttttatgactgtttatcctgaagtcaccttctctctaccacagGAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtacatgggttgggtgtttcttttattttttttttttttatttaggaaaa #### Smc3_ID11326_14 --> 0 - 2 Original Alignment AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAaa ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAaagtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt Alignment from CESAR AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAaa ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAaagtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt Alignment from Spaln_aa2Genome AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAA ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAAgtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt Alignment from Spaln_nt2Genome AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAA ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAAgtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt Alignment from Pairagon AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAA ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAAgtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt Alignment from Exonerate_protein2genome AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAA ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAAgtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt Alignment from Exonerate_coding2genome AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAA ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAAgtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt Alignment from GeneWise AAATTGGATCAGGATCTCAATGAAGTCAAAGCTCGAGTTGAAGAACTGGACAGAAAATATTATGAAGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAA ggcacctttggatgaggctcagaggtctccccccccccaacccccgacagGAATTGGATCAGGATCTTAACAAAGTCAAGGCTCGAGTTGAAGAACTTGACAGAAAATATTATGACGTAAAAAATAAGAAAGATGAACTACAAAGTGAAAGAAAgtaggaaaaccttgataggttgtaatttaaatcacatctgcctgtaaagt #### Smc3_ID11328_16 --> 0 - 2 Original Alignment GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACag gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACaggtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt Alignment from CESAR GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACag gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACaggtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt Alignment from Spaln_aa2Genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACAGgtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt Alignment from Spaln_nt2Genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACAGgtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt Alignment from Pairagon GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACAGgtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt Alignment from Exonerate_protein2genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACAGgtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt Alignment from Exonerate_coding2genome GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACAGgtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt Alignment from GeneWise GCCATTTTAAATGGAATAGATAGCATTAACAAAGTGCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATCGTAATGAATAACTTTGAGTGTGAACCAGCTTTCTATACTTGTGTGGAAGTCACTGCTGGTAACAG gacttgctgcttgtggtgattagatttttctcttacaaaacaattcttagGCCATTTTAAATGGTATAGATAGCATTAACAAGGTTCTAGAACATTTTCGGCGAAAAGGTATAAACCAGCATGTTCAAAATGGCTACCATGGCATTGTAATGAATAACTTTGAGTGTGAAGCAGCCTTCTATACTTGTGTGGAAGTCACCGCTGGTAACAGgtaagtttggggttgggtggaattttagggggtaggggttgtgcctcatt #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaggcatagaagcatgcctcctaagtctgctctcttttcttttctagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTCAGTCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatactcagtttctgctacagctttatcattgaagac #### Smc3_ID11339_27 --> 0 - 1 Original Alignment GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAG---CAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAg ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAggtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga Alignment from CESAR GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAG---CTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAg ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAggtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga Alignment from Spaln_aa2Genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAGgtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga Alignment from Spaln_nt2Genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAAT---GCAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAGgtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga Alignment from Pairagon GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAAT---GCAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAGgtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga Alignment from Exonerate_protein2genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAGgtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga Alignment from Exonerate_coding2genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAGgtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga Alignment from GeneWise GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAG---CTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ggttggtgcacagtttgtatggggtagctagtgactcttttcttccctagGTGTCTTTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAGCAGCAGCTCTCCGGAGGGCAGAAATCTCTGGTAGCCCTTGCTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCTTTTTACTTGTTTGATGAGATTGACCAAGCTTCAGATGCGCAACACAGGAAGGCTGTGTCAGgtgagtatctccatatcaattgcacttattgtgagttggggaaatgggga #### Smc5_ID5109_22 --> 0 - 0 Original Alignment GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg Alignment from CESAR GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg Alignment from Spaln_aa2Genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg Alignment from Spaln_nt2Genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg Alignment from Pairagon GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg Alignment from Exonerate_protein2genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg Alignment from Exonerate_coding2genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg Alignment from GeneWise GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG gagatgatagtattgtttcagagtttttcagtgcttgctttctgcttcagGTGAAAGAACGGTGGCTGAATCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtaattgtgtttgtaatgcagtatatttctaacaactttaattttaattg #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagtagtactcacttcacctttcatgactactccccatctctctcacagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaaatcaccatatcttcggtatccatcccactgtttccatactgctgtt #### Smc5_ID5116_17 --> 0 - 0 Original Alignment ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct Alignment from CESAR ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct Alignment from Spaln_aa2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct Alignment from Spaln_nt2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct Alignment from Pairagon ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct Alignment from Exonerate_protein2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct Alignment from Exonerate_coding2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct Alignment from GeneWise ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA gaaactgacaccaaataataaccaagattctttcaactgcctctcggtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATTACATGGCATCATCATCCCAGCTGCGTGTCACAGAAgtaaaacatacttcccttaggttttatattctccaaccttaaacacgtct #### Smc5_ID5120_13 --> 1 - 0 Original Alignment aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagaCCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca Alignment from CESAR aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagaCCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca Alignment from Spaln_aa2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagACCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca Alignment from Spaln_nt2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagACCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca Alignment from Pairagon ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagACCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca Alignment from Exonerate_protein2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagACCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca Alignment from Exonerate_coding2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagACCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca Alignment from GeneWise ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG tttttgtgagtagtgtttcataaaaaacttaacctggagttctgttgcagACCATATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaagtattcaaacatctagaaacttgttatgtttcattgactatggcca #### Smc5_ID5122_11 --> 0 - 0 Original Alignment ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct Alignment from CESAR ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct Alignment from Spaln_aa2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct Alignment from Spaln_nt2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct Alignment from Pairagon ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct Alignment from Exonerate_protein2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct Alignment from Exonerate_coding2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct Alignment from GeneWise ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaggaagagtaattagcctgagtccgtctttctgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaagtactaactattcccacactcaattgacctggcaccttccacctct #### Smc5_ID5124_9 --> 0 - 1 Original Alignment ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTagtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt Alignment from CESAR ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTagtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt Alignment from Spaln_aa2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt Alignment from Spaln_nt2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt Alignment from Pairagon ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt Alignment from Exonerate_protein2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt Alignment from Exonerate_coding2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt Alignment from GeneWise ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatggaaattaattttgttttcacagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAATACCTGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAGAACTGTGAGAACCTTCAGCCTCAGATTGACACGGTCACAAATGATCTGAGGCATGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagcttgaggggtgcaaagaatcatgtatagctgggaacttggttatt #### Smc5_ID5129_5 --> 0 - 0 Original Alignment GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTCAAT---TTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc Alignment from CESAR GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc Alignment from Spaln_aa2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc Alignment from Spaln_nt2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc Alignment from Pairagon GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc Alignment from Exonerate_protein2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc Alignment from Exonerate_coding2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc Alignment from GeneWise GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG aatagagtgtagttgataatacttgctattctccgtttctatttcttcagGACAAAGTTGGGGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTGCTCCTCCAGAGATACACAGATATCACTGTGAACTC---AATTTCAGGGAAAAAGAGAAGCAGCTTGAGgtgagaaagaacagcaatcatctcagtatcctttaatcttaagtacttcc #### Snx15_ID1465_7 --> 2 - 1 Original Alignment aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagaaAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTggtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga Alignment from CESAR aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagaaAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTggtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga Alignment from Spaln_aa2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagAAAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTGgtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga Alignment from Spaln_nt2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagAAAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTGgtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga Alignment from Pairagon AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagAAAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTGgtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga Alignment from Exonerate_protein2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagAAAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTGgtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga Alignment from Exonerate_coding2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagAAAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTGgtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga Alignment from GeneWise AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG ggccgtgaataaatgggtccccatgggttgctttctcttttcctctttagAAAGTACAGGCCCCAGCCCTACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGAGGCTAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCCCCACCTTATCTTGGCCAGGCAACAGAGCTCATCACTCAAACCCTGCGAAATGAAAAGGCAGGCACCTATACCGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTCTCTGgtaaggagggagtagggaggaggctaagtggaaaacaaaggaccaatcga #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAggtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAggtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAGgtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAGgtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAGgtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAGgtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAGgtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctccccagccagccagattcctaccctgtgcgctctctacaccctcacagGGTGGGGAGGTAACACGCCCCTCTGAGGTCTCCAGAGACCTGCGAATTCTGCTGCCTCCTCTCATTCCGACAATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCACTGCCTGCTGAAAGGAGGGGCCAGGAAGAATTGGAAGTTCCAGgtaatcctaggtcaggcaaggagttgagacttccaattgtaacccttgca #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from GeneWise ----------------------------------------------------CTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG TGGTGGCACTGGGTGTGCACATTCATCCGTGCTTCTCTGTCTCCACTTAGGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAgcgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAgcgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC agggtgggtggctgtgacagccctttggtgacccatggaccaccactcagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGCAACAGCTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCAGAGCTAGAAGCgtgagaatctccttcaccactccccatttctccagggtctcctaaaaaag #### Sorbs1_ID7895_24 --> 1 - 1 Original Alignment gTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTg acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcaggTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTggtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag Alignment from CESAR gTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTg acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcaggTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTggtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag Alignment from Spaln_aa2Genome GTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTG acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcagGTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTGgtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag Alignment from Spaln_nt2Genome GTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTG acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcagGTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTGgtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag Alignment from Pairagon GTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTG acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcagGTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTGgtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag Alignment from Exonerate_protein2genome GTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTG acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcagGTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTGgtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag Alignment from Exonerate_coding2genome GTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTG acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcagGTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTGgtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag Alignment from GeneWise GTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTG acaatctcacgggagtgaaggcactcactaatttcattttcttatgtcagGTGTAGCTACCAAGCATTATATGGTTATGTACCACAGAATGATGATGAGTTGGAACTCCGAGATGGGGATATTGTTGATGTTATGGAAAAATGTGATGATGGTTGGTTTGTTGgtgaatgtgccatcatgtgcctttctttaggttgggagagggactgaaag #### Sorbs1_ID7905_18 --> 0 - 0 Original Alignment AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct Alignment from CESAR AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct Alignment from Spaln_aa2Genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct Alignment from Spaln_nt2Genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct Alignment from Pairagon AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct Alignment from Exonerate_protein2genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct Alignment from Exonerate_coding2genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct Alignment from GeneWise AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG ttaaagtggaccaactgattcactgcaatccctttaccccacgtccccagAAACTTTTAGTGGACCAGACACTACTTAAGCATGAGCAAGAAGAGGCTGATATTGCAGCTCGCCGGCATGCAGGTGTTATACCAACTCATCATCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACAGCAAAAAGGAAATCTGGGTTACAGgtttgttttggttattgccaactgtggctcaccccaacgcagtcttccct #### Sorbs1_ID7909_16 --> 2 - 1 Original Alignment tgGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAg ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagttGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGC---CCCTCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAggtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca Alignment from CESAR tgGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAg ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagttGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGC---CCCTCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAggtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca Alignment from Spaln_aa2Genome TGGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAG ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagTTGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGCCCC---TCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAGgtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca Alignment from Spaln_nt2Genome TGGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAG ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagTTGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGCC---CCTCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAGgtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca Alignment from Pairagon TGGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAG ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagTTGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGCC---CCTCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAGgtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca Alignment from Exonerate_protein2genome TGGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAG ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagTTGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGC---CCCTCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAGgtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca Alignment from Exonerate_coding2genome TGGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAG ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagTTGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGC---CCCTCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAGgtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca Alignment from GeneWise TGGATCGTAAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAG ttcagctttggactgatgggtgtgtttataatctccgctctcttcaacagTTGATCATAAAGGTGGTAATGCACACATGATTTCTTCATCATCAGTGCATAGCCGAACATTCCACACTAGCAATGCCTTAGGCCCTGGGTGTAAGCACAAGAAACCCCTGTCAGCTGCAAAAGCCTGCATCTCAGAGATCCTTCCATCTAAATTCAAACCCAGGCTCTCTGCTCCCAGCGCTCTATTACAGGAACAGAAGAGTGTCCTGTTGCCCTCAGAGATGGCTCGGAGCTGTGAGAACCTCTGTGTGTCCTTGAATGATTCCAAAAGGGGCCTCCCACTTCGGGTTGGAGGGAGCATTGACAATCTGCTCATGCACTTGCGGCAGGATTATGACAGTAAGTCCAGTAGTACCATGAGCCTGCAAGAGTATGGCACTAGCTCTAGGAGGCCCTGCCCTCTCTCCAGGAAAGCTGGACTCCACTTCTCCATGTTCTACCAGGAAATTCACCAGATCAACCGAGCTGGCCTTTCCTTGGGCTCAATCTCTTCCTCGAGTGTTCGAGATCTTGCTTCCCACTTTGAAAGGAGCAGACTGACGTTAGCCAGGGGAGAACTGGGAGCTAGCCAAGAAGGCTCGGAGCATATACCCAAACACACTGTGTCTTCTCGCATCATGTCCTTTGAGCAGCTCATTCAGCGGTCACGGTCCATGCCTTCCCTGGACTTCCCTGGTCGCCTGAGCAAGTCCCCAACCCCTGTGCTTTCTAGGAGTGGC---CCCTCAGCTCGTTCAGCGGAATCCCTCCTTGAGTCTACCAAACTCCATCCCCAAGAGATGGATGGGATGGACTCTGGAGGGATCTATGCGTCACCCATGTGTAGTAATATGGCGGATCATGCCTTGAGCTTCCGAACTCATGTGCCCTCCGAGCCTCTTTCCATCTGCTCAGATGAGCTTGACCACTGCTCAAATGTTTCAAATGACAGCAGGGAGGGCAGTGGGGGTAGTGTACATGGAGACTTCCCCAAACATCGCCTCAACAAGTGCAAGGGTGCCTGCCCAACTTCATACACTCCATTCACCACTATCCGCAAACACAAGCAGCAGTCATCCAGGCAATCAGACTGGCGGTCAGATTCCAGGGGGGATAAGAACAGTCTTCTCAGAAACATCCACCTAATGAGTCCCCTCCCTTTTCAACTAAAAAAGCCCCTCCAGCAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCATGACCCTCAGGACCAGCCTCATTCT---GGGAAACCCCTGGTCCCTGCTCGCCTGTCTGCCCGATATACCATGGCAAGGCTTAGCCACAACCTGGAACCCCCTCTGGACAGGCCCGCAGGCTTGGAGGACTGCACAAGGGCTATTAATAATGGGAACCCAGTGCCCTACTCAGACCACAGCTTGGACAGGAACAATAACCCACAAAGTGAACTGGCAGCAGCTCACGGAGgtgagattttatgtgtttgtccggtttcaccttcttcttgccactcgaca #### Sorbs1_ID7912_14 --> 0 - 2 Original Alignment AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGAta acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGAtagtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac Alignment from CESAR AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGAta acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGAtagtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac Alignment from Spaln_aa2Genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGATAgtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac Alignment from Spaln_nt2Genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGATAgtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac Alignment from Pairagon AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGATAgtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac Alignment from Exonerate_protein2genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGATAgtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac Alignment from Exonerate_coding2genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGATAgtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac Alignment from GeneWise AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccaccattataagtttttactattacagtttcttttatccctctccagAGTTCAGTGGTCAGTCCAACTCCAGACATTACATCAGAGCCTCCTGGATAgtgagtagtacctcttatgtttccatggctcaatgtaccaatgagtatac #### Sorbs1_ID7913_13 --> 0 - 0 Original Alignment ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac Alignment from CESAR ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac Alignment from Spaln_aa2Genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac Alignment from Spaln_nt2Genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac Alignment from Pairagon ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac Alignment from Exonerate_protein2genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac Alignment from Exonerate_coding2genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac Alignment from GeneWise ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG tctttttttgttaaagtaacattcccttgcctgaggtcctgtctctgcagACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCACAGgtgggtccagttttcctctgggtgatagtcaccacctcaatatagagcac #### Sorbs1_ID7914_12 --> 0 - 0 Original Alignment AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct Alignment from CESAR AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct Alignment from Spaln_aa2Genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct Alignment from Spaln_nt2Genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct Alignment from Pairagon AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct Alignment from Exonerate_protein2genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct Alignment from Exonerate_coding2genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct Alignment from GeneWise AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG atgctaatattcttctcttgcttccagtatgtgctgtgtctgttaattagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtaactgttgcttatgtctttatgcatcttcatgtccacctctacctcct #### Sorbs1_ID7916_11 --> 1 - 0 Original Alignment aAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagaAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct Alignment from CESAR aAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagaAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct Alignment from Spaln_aa2Genome AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagAAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct Alignment from Spaln_nt2Genome AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagAAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct Alignment from Pairagon AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagAAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct Alignment from Exonerate_protein2genome AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagAAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct Alignment from Exonerate_coding2genome AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagAAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct Alignment from GeneWise AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATG ttggaattctggtgctgttttcagaaaaggttgcttaaattgtgctttagAAATGATTGGGAGCCCCCGGATAAGAAAGTGGATACAAGAAAATACCGAGCAGAGCCCAAAAGCATCTACGAATATCAGCCAGGCAAGTCTTCGGTCCTGACCAATGAAAAGATGgtaaggtgtagatgaaaggttttttggttgcccttttgtagcttggacct #### Sorbs1_ID7921_8 --> 0 - 1 Original Alignment AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAg caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGggtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag Alignment from CESAR AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAg caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGggtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag Alignment from Spaln_aa2Genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGGgtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag Alignment from Spaln_nt2Genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGGgtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag Alignment from Pairagon AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGGgtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag Alignment from Exonerate_protein2genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGGgtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag Alignment from Exonerate_coding2genome AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGGgtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag Alignment from GeneWise AATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAG caggttttccttgtgtttactctggtcttctttttcttttacattttaagAATACTGAGCGATTGAAAGACTGGTACAAAACTATGTTCAAACAGATCCACAAACTGAACAGGGgtatgtatgctgtgtggcattgtgggaacttattgacctttggttatgag #### Sorbs1_ID7924_6 --> 0 - 1 Original Alignment GGC---AGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAg atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAggtaagacaggctcccaaagactactagagtcagcagttccaactcatgat Alignment from CESAR GGCAGT---CCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAg atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAggtaagacaggctcccaaagactactagagtcagcagttccaactcatgat Alignment from Spaln_aa2Genome GGCAGT---CCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAGgtaagacaggctcccaaagactactagagtcagcagttccaactcatgat Alignment from Spaln_nt2Genome GGCAGTC---CTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAGgtaagacaggctcccaaagactactagagtcagcagttccaactcatgat Alignment from Pairagon GGCA---GTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAGgtaagacaggctcccaaagactactagagtcagcagttccaactcatgat Alignment from Exonerate_protein2genome GGCAGT---CCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAGgtaagacaggctcccaaagactactagagtcagcagttccaactcatgat Alignment from Exonerate_coding2genome GGCAGT---CCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAGgtaagacaggctcccaaagactactagagtcagcagttccaactcatgat Alignment from GeneWise GGCAGT---CCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACAAGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAG atctgtatgactgaagtgggtcaagttccctgcctccttgtcctcgccagGGCAGTCGTCCTATACTCAATGAAGTCTCTTCTTCCCACATTGAGACTGACTCTCAAGACTTTCCTCCAGCTAGTAGACCTTCATCTGCCTACCCCTCCACCACCATTGTCAATCCTACCATTGTGCTCCTGCAGCACAATCAAGgtaagacaggctcccaaagactactagagtcagcagttccaactcatgat #### Sorbs1_ID7930_5 --> 2 - 0 Original Alignment atGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagatGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg Alignment from CESAR atGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagatGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg Alignment from Spaln_aa2Genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg Alignment from Spaln_nt2Genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg Alignment from Pairagon ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg Alignment from Exonerate_protein2genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg Alignment from Exonerate_coding2genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg Alignment from GeneWise ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG ggtgttacacctgtgggtgatggggtatctctttctttttttccctttagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCATCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgttagttttagagctgcctagacaattggcttccagcagtctaaactctg #### Sorbs1_ID7933_3 --> 2 - 1 Original Alignment acATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAg cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagacATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAggtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg Alignment from CESAR acATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAg cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagacATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAggtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg Alignment from Spaln_aa2Genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagACATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAGgtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg Alignment from Spaln_nt2Genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagACATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAGgtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg Alignment from Pairagon ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagACATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAGgtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg Alignment from Exonerate_protein2genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagACATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAGgtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg Alignment from Exonerate_coding2genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagACATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAGgtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg Alignment from GeneWise ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG cccttagaagccttgactcggacccaactgtaaattgtctccttaaacagACATGGACCCTACCAAAATCTGCACTGGGATAGGAACAGTGACTCTTCAGGCCTCGTCTTCGTACAGGGGAACCCCCAGCAGCAGCCCTGTGAGCCCTCAGGAATCTCCTAAGCATGATAGCAAATCAGgtgagatgtcctacagcctgtgaggatggatgtcattatggagcccgatg #### Sorcs3_ID10544_3 --> 1 - 0 Original Alignment gTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcaggTCAGTAGATCACGGTGCCTCCTATGAAAAACTC---AACAAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg Alignment from CESAR gTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcaggTCAGTAGATCACGGTGCCTCCTATGAAAAACTCAAC---AAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg Alignment from Spaln_aa2Genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcagGTCAGTAGATCACGGTGCCTCCTATGAAAAACTCAAC---AAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg Alignment from Spaln_nt2Genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcagGTCAGTAGATCACGGTGCCTCCTATGAAAAACTCA---ACAAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg Alignment from Pairagon GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcagGTCAGTAGATCACGGTGCCTCCTATGAAAAACTCA---ACAAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg Alignment from Exonerate_protein2genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcagGTCAGTAGATCACGGTGCCTCCTATGAAAAACTCAAC---AAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg Alignment from Exonerate_coding2genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcagGTCAGTAGATCACGGTGCCTCCTATGAAAAACTCAAC---AAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg Alignment from GeneWise GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG tcacaccagtggacccttaatctctccctacatatgctatatcttttcagGTCAGTAGATCACGGTGCCTCCTATGAAAAACTCAAC---AAAGTGGGTTTGAAGACTATCCTCAGTTATCCATATGTCAACCCGACCAACAAGTGGAGGgtaagtgaagggatcaagagtttctgtagtgccaaccttttagtgcaggg #### Sorcs3_ID10602_9 --> 0 - 0 Original Alignment GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat Alignment from CESAR GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat Alignment from Spaln_aa2Genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat Alignment from Spaln_nt2Genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat Alignment from Pairagon GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat Alignment from Exonerate_protein2genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat Alignment from Exonerate_coding2genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat Alignment from GeneWise GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG aaagacagtacagcactctacctttccagtccccatgtgtgtcttcctagGACATGCACACTATCAGTACTGATGAAAACCAAGTGTTTGCAGCTGTACAAGAATGGAACCAAAATGATACCCACAATCTCCACATCTCCGACACACGTGGGATCCACTTCACCCTCACTATGGAGAACATTAGGAGCAGTCGTGGTCTAATGGGAAACATTATTATAGATTTGTATGAGgtaaacagctcaattcactctccctggatttccctttcccctatatgtat #### Sorcs3_ID10604_10 --> 0 - 0 Original Alignment GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg Alignment from CESAR GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg Alignment from Spaln_aa2Genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg Alignment from Spaln_nt2Genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg Alignment from Pairagon GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg Alignment from Exonerate_protein2genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg Alignment from Exonerate_coding2genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg Alignment from GeneWise GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG cagtccaaggctaccctggcccagggtactgttggttttgtggttttcagGTAGCAGGTATCAAGGGGATATTCCTAGCCAACAAGAAGGTGGATGACCAGGTGAAGACATATATTACCTACAACAAAGGCAGGGATTGGCGACTCCTACAAGCTCCAGATGTGGACCTGAGGGGAGGCCCTGTGCACTGTTTACTGgtgagtttcgtagccttaggtcagattcacagaacacaaagctcccctgg #### Sorcs3_ID10605_11 --> 0 - 1 Original Alignment CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGg ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTggttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag Alignment from CESAR CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGg ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTggttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag Alignment from Spaln_aa2Genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTGgttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag Alignment from Spaln_nt2Genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTGgttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag Alignment from Pairagon CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTGgttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag Alignment from Exonerate_protein2genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTGgttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag Alignment from Exonerate_coding2genome CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTGgttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag Alignment from GeneWise CCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGG ggtcctgccactaacctgaaatcaatcttttcctgtctttttctttttagCCCTTCTGTTCATTACACTTGCATCTGCAGCTATCTGAAAACCCATATTCCTCTGGAAAAATCTCTAGCAAGGGCACAGCACCTGGACTTGTTGTTGCCACTGgttggtgtagttttacacagtccatgtatcccaagttgtttttcccatag #### Sorcs3_ID10608_12 --> 2 - 0 Original Alignment gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacaggtAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca Alignment from CESAR gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacaggtAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca Alignment from Spaln_aa2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca Alignment from Spaln_nt2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca Alignment from Pairagon GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca Alignment from Exonerate_protein2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca Alignment from Exonerate_coding2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca Alignment from GeneWise GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG tttaaaacacaagcttccagatgatctattcatatttcttcctgttacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGCGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAAgtatgtagaagattccaaggaaagggagaaatctgagactgattctgcca #### Sorcs3_ID10628_19 --> 0 - 1 Original Alignment GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTt aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTtgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt Alignment from CESAR GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTt aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTtgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt Alignment from Spaln_aa2Genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTTgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt Alignment from Spaln_nt2Genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTTgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt Alignment from Pairagon GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTTgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt Alignment from Exonerate_protein2genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTTgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt Alignment from Exonerate_coding2genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTTgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt Alignment from GeneWise GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT aggattgaaaagcagaccattggcccaactggacccggtgtggcttacagGGTGACCTTCAGAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCTATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAGGTGACAGCTTACGCGGAGAACAACCTTGGCTCAGACACAGCCTTCCTCTTCCTGCATGTGGTTTgtacttaggtaataagtattcccccccccacttttcccaactctgtaatt #### Sptbn2_ID606_2 --> 2 - 0 Original Alignment atGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagatGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg Alignment from CESAR atGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagatGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg Alignment from Spaln_aa2Genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagATGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg Alignment from Spaln_nt2Genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagATGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg Alignment from Pairagon ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagATGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg Alignment from Exonerate_protein2genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagATGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg Alignment from Exonerate_coding2genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagATGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg Alignment from GeneWise ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG tccattggtgtttcaaagccagcacactttgtttgtatatgttgttacagATGAACGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCCCGGGTGACATGTCGGTTGGGAGACCTGTACAGTGACCTTCGGGATGGGCGCAACCTCCTTAGGCTTCTGGAAGTGCTCTCAGGAGAGACCCTTgtaacttagagtaatccatggaagcaagagcctcagagactggtcaaggg #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Exonerate_protein2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from Exonerate_coding2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ttccacttggataaaggggcaagagtacttaaccagtctgtgatgcccagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTGATTCGCCAGAAGAAACTAGAGCAACTGGCTGCTCGATTTGACCGTAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGTCTTGTTTCTCAAgtacgacgtatcttttagacacaggtttcaggcacgggctcatgtttcag #### Sptbn2_ID617_12 --> 0 - 1 Original Alignment GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAagtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat Alignment from CESAR GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAagtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat Alignment from Spaln_aa2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAAgtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat Alignment from Spaln_nt2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAAgtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat Alignment from Pairagon GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAAgtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat Alignment from Exonerate_protein2genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAAgtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat Alignment from Exonerate_coding2genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAAgtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat Alignment from GeneWise GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG ctactgtacagtggccagaagggcataattgtgttgttttttttttccagGGCCGACTGCAGTCTCAGGACCTGGGCCAGCACCTGGCCGGGGTGGAGGACTTCCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGGCTGAGAGAGTCCAAGCAGTCAGTGCCTCCGCCTTGCGATTCTGCGACCCAGGCAAAAgtgagtgctggggagagggaaatgtggaaagactagaaaacaggaaacat #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgtgagcctttgattgcgatcttccatcatttatatagACCCTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCCGACCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACGATGGGCCAAGAAAGGGCCAAGgtgagtgttgaggaatggctgtcttgctgcccattctcttactcccaaag #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg #### Sptbn2_ID630_25 --> 0 - 0 Original Alignment ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAGCGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag Alignment from CESAR ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAGCGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag Alignment from Spaln_aa2Genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAGCGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag Alignment from Spaln_nt2Genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAGCGCC---ACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag Alignment from Pairagon ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAGCGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag Alignment from Exonerate_protein2genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAG---CGCCACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag Alignment from Exonerate_coding2genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAG---CGCCACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag Alignment from GeneWise ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG attgctccttgagggggggacccacagaatttggttttattttattccagATGCTTCAGGATAAATTTCGAGAATTCTCCAAGGACACTAGCACCATTGGCCAGGAGCATGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCGGCACGGGCCACTGTTGCTGAGTGGAAGGATAGTCTCAATGAAGCCTGGGCTGACCTGTTGGACTTACTGGACGCAAAAGGTCAAGTGCTGGCTGCTGCGTATGAGCTTCAGCGCTTCCTGCATGGTGCCCGTCAAGCCCTTGCGCAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTCAATGCTGCTGAGGCACTGCAGCGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGCGCCCAGgtaaatcactttcatacgaatttcatatgaattattcaaagagctgagag #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTggtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTggtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT cctttcaactcagccagcatttggatccccttgtttccctttgctctcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTCCCTGAGGGACCTgtgagcttagctaatggcttaagtatggatgtcaaaagatgaggatgcaa #### Ssh3_ID443_13 --> 1 - 0 Original Alignment cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagcCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg Alignment from CESAR cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagcCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg Alignment from Spaln_aa2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagCCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg Alignment from Spaln_nt2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagCCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg Alignment from Pairagon CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagCCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg Alignment from Exonerate_protein2genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagCCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg Alignment from Exonerate_coding2genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagCCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg Alignment from GeneWise CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA ggggtggctcctgtgacactcaaagttagatgattctgttttcattgtagCCAGCAGAGCCGTGTCTGGGAGCAAAAAGTAGGCGTGGTATCCCCTGAGGAACCTCTAGCACCTGAAGTTTCTACACCATTGCCACCTTTTCCACCTGAACCAGGGGGCAGTGGGGAGGTGATGGTGATGGGCCTGGAAGGAAGCCAAGAAACCCCGAAAGAAGATCTAGGACTGCAGCCCCGGATCAACCTTCGAGGGGTCATGCGGTCCATCAGTCTCCTTGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCAGGAGGCCTGCCAGAAgtaagttcagactggggctctccctcaagatgttcaggaaacatgtggtg #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttaagagcgattgttcttatttcagGGCTCTGAATGGA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttactgaattttctttccactgcagGGCTCTGAATGGA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttaagagcgattgttcttatttcagGGCTCTGAATGGA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttaagagcgattgttcttatttcagGGCTCTGAATGGA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttaagagcgattgttcttatttcagGGCTCTGAATGGA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttaagagcgattgttcttatttcagGGCTCTGAATGGA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttaagagcgattgttcttatttcagGGCTCTGAATGGA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGA ctacatcatgggaggcccgttctttgccaaatgtttacttcttcaaatagATCCATCAGGCCTTGGAACTGCATCTCGGATGTCCTCTTCAGCAATACCGTGACTTTATTGACAACCAGATGCTACTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCACACCTCTACTTGgtgagttgtcctttaagagcgattgttcttatttcagGGCTCTGAATGGA #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaaggGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaaggGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgaaatggaccttttgtctccgtttgttaaagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGACCTGGAGAGTGTCACTTCCAAAGAGgtaaggatgatgaccaggctggcctgagacttgccttcctttgtgactct #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagtTGCCACAGCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATgggtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat Alignment from CESAR tTCCCACAGCTGCACC---------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagtTGCCACAGCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATgggtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagttgccacagCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATGGgtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat Alignment from Spaln_nt2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagttgccacagCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATGGgtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat Alignment from Pairagon TTCCCACAGCTGCACC---------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagTTGCCACAGCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATGGgtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagttgccacagCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATGGgtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat Alignment from Exonerate_coding2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagttgccacagCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATGGgtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat Alignment from GeneWise TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctgggaaacaaccatcaccactgtcccctccagttgccacagCTGCACCAGCTGCACACTGGGTCTAGTCCTGCCCCTCTGGAGTGATACCCAAGTGTACCTGGATGGGGATGGgtatgtggctctctgtaggaacaagagggggttcacaagaatgggtagat #### Ssh3_ID453_3 --> 1 - 0 Original Alignment gCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacaggCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAA------CAGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt Alignment from CESAR gCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacaggCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAA------CAGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt Alignment from Spaln_aa2Genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAA------CAGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt Alignment from Spaln_nt2Genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAAC------AGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt Alignment from Pairagon GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAAC------AGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt Alignment from Exonerate_protein2genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAA------CAGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt Alignment from Exonerate_coding2genome GCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAA------CAGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt Alignment from GeneWise -CAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTG ggtttgaaaatctatgtgaggtctgcacagtttgtcttctctgtccacagGCAGAGTTTTGCGGTGCTTCGAGGGGCTGTTCTAGGACTTCAGCATGGAGGGGACAGCAACATTGCATCTGATGCTGACTCAGAA------CAGGAACCCTCCGGCGAGGAACAGCCCACTGAGGACCAGGCTGACAAAGGGCAAGGACTCCACAGTCCCTGGAAACAAGTGCAGAAACGGCATCTGCACCTCATGGTAGAATTACTGAGGCCACAGGAGGATATTCGTCTGgtgagtaattatgcagagctccagtctatctcagatcagggtgacaaatt #### Stambpl1_ID6894_2 --> 0 - 2 Original Alignment AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAac tcacacacattcacaagcttataacctgaggtgatgaacctgtcttccagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAacgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat Alignment from CESAR AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAac tcacacacattcacaagcttataacctgaggtgatgaacctgtcttccagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAacgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat Alignment from Spaln_aa2Genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC tcacacacattcacaagcttataacctgaggtgatgaacctgtcttccagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat Alignment from Spaln_nt2Genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC tcacacacattcacaagcttataacctgaggtgatgaacctgtcttccagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat Alignment from Pairagon AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC tcacacacattcacaagcttataacctgaggtgatgaacctgtcttccagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat Alignment from Exonerate_protein2genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC tcacacacattcacaagcttataacctgaggtgatgaacctgtcttccagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat Alignment from Exonerate_coding2genome AAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC tcacacacattcacaagcttataacctgaggtgatgaacctgtcttccagAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat Alignment from GeneWise GAGCAGCCATTCACTGTGAATTCACTGAAAAAGTTAGCTGCTATGCCTGACCATACAGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGCGCCCTAAGCAAACTTGGTTGTAATATCTCCATTAATGAAGATATCACCCCACGCCGTTACTTCAGGTCCGGAGTGGAAATGGAAAGGATGGCATCTGTGTATTTGGAAGAAGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAAC ttcacaagcttataacctgaggtGATGAACCTGTCTTC---------CAGAAAAAGTTAGCTGCTATGCCTGACCATACTGATGTTTCTCTAAGTCCAGAGGAGCGGGTCCGTGCCCTAAGCAAACTTGGTTGTAACATCTCCATTAATGAAGATATCACTCCACGCCATTACTTCAGATCTGGAGTGGAAATGGAAAAGATGGCACCTGTGTATTTGGAGGAGGGAAACCTGGAAAATGCCTTTGTTCTTTATAACAAATTTATAACgtaaggctttgaactgaaacttctaaactcaagtatgctatggtatgcat #### Stambpl1_ID6901_8 --> 0 - 2 Original Alignment ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGgagtataagggacaagatagctctcctacattccaatcagcaacaatctctg Alignment from CESAR ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGgagtataagggacaagatagctctcctacattccaatcagcaacaatctctg Alignment from Spaln_aa2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGGAgtataagggacaagatagctctcctacattccaatcagcaacaatctctg Alignment from Spaln_nt2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGGAgtataagggacaagatagctctcctacattccaatcagcaacaatctctg Alignment from Pairagon ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGGAgtataagggacaagatagctctcctacattccaatcagcaacaatctctg Alignment from Exonerate_protein2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGGAgtataagggacaagatagctctcctacattccaatcagcaacaatctctg Alignment from Exonerate_coding2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGGAgtataagggacaagatagctctcctacattccaatcagcaacaatctctg Alignment from GeneWise ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA gaacagactctcgcaatttctattaaaaccccccgtttcttgcctttcagACACACCCCACACAATCAGCATTTCTGTCCAGTCTGGATCTGCACACTCACTGCTCCTACCAGCTCATGTTGCCAGAGGCCAACGCTATAGTGTGTTCCTCAAAGCATAGGGAgtataagggacaagatagctctcctacattccaatcagcaacaatctctg #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTG gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGacgcctgaggttcagcaaataatgagtgacccagccatgagactcatcctggagcagatgcaaaaggacccccaggctctgagcgagtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTG gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGacgcctgaggttcagcaaataatgagtgacccagccatgagactcatcctggagcagatgcaaaaggacccccaggctctgagcgagtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTG------------------ACGCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagacAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGCAC------CAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagacAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCA------TGCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCA------TGCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt #### Stip1_ID1993_8 --> 1 - 0 Original Alignment aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg Alignment from CESAR aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg Alignment from Spaln_aa2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg Alignment from Spaln_nt2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg Alignment from Pairagon AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg Alignment from Exonerate_protein2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg Alignment from Exonerate_coding2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg Alignment from GeneWise AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttctaacactcttctacctgacccttctcttacagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtgaggctgaaaagattgtgccttttctaaaaccctatacacaaggctgg #### Stx3_ID3301_5 --> 2 - 0 Original Alignment gcATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcaggcATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca Alignment from CESAR gcATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcaggcATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca Alignment from Spaln_aa2Genome GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcagGCATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca Alignment from Spaln_nt2Genome GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcagGCATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca Alignment from Pairagon GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcagGCATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca Alignment from Exonerate_protein2genome GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcagGCATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca Alignment from Exonerate_coding2genome GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcagGCATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca Alignment from GeneWise GCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAG ggtctttttgtagaaaggaaggtagaattgaaacatggtatctgttgcagGCATGGAGAAGCACATTAAAGAAGATGAGGTTCGGTCATCTGCAGACCTTCGGATACGCAAGTCCCAGgtgggtttgttttccttttaataatcaccccctaataatcatttatacca #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct #### Sufu_ID9909_10 --> 1 - 0 Original Alignment gGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacaggGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca Alignment from CESAR gGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacaggGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca Alignment from Spaln_aa2Genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacagGGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca Alignment from Spaln_nt2Genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacagGGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca Alignment from Pairagon GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacagGGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca Alignment from Exonerate_protein2genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacagGGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca Alignment from Exonerate_coding2genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacagGGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca Alignment from GeneWise GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctccagtgctctctgtctccccacagGGGCAGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTCGTATCCATGGGAGTGAAAAGTGCCTTTGCCACTGAGGAACGCCCATATGCAGCTCATGGGCCCTGGTTACAAgtaagctgcagcttccccaccaccccaaggacaggcccctatggctccca #### Suv420h1_ID141_3 --> 1 - 2 Original Alignment cGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGag atccagcagtgtaagttgtttttactacaatggatttatttttactttagtGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGaggtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc Alignment from CESAR cGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGag atccagcagtgtaagttgtttttactacaatggatttatttttactttagtGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGaggtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc Alignment from Spaln_aa2Genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atccagcagtgtaagttgtttttactacaatggatttatttttactttagTGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc Alignment from Spaln_nt2Genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atccagcagtgtaagttgtttttactacaatggatttatttttactttagTGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc Alignment from Pairagon CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atccagcagtgtaagttgtttttactacaatggatttatttttactttagTGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc Alignment from Exonerate_protein2genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atccagcagtgtaagttgtttttactacaatggatttatttttactttagTGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc Alignment from Exonerate_coding2genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atccagcagtgtaagttgtttttactacaatggatttatttttactttagTGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc Alignment from GeneWise CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atccagcagtgtaagttgtttttactacaatggatttatttttactttagTGCCTTTCCTTCGAGGAGTTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtgagtagtgggttttttaattaaacaagaatgccacaagcttgtggctc #### Syt12_ID534_6 --> 2 - 0 Original Alignment acCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagacCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc Alignment from CESAR acCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagacCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc Alignment from Spaln_aa2Genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc Alignment from Spaln_nt2Genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc Alignment from Pairagon ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc Alignment from Exonerate_protein2genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc Alignment from Exonerate_coding2genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc Alignment from GeneWise ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG tggagccatagcagtgagggtcaccagtatggcctgaatctgtcccctagACCCCTTCGTCAAAGTATACCTGCTGCAAGATGGGAGGAAAATGAGCAAGAAGAAGACAGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAATGAAGCCATGATCTTCTCAGCGCCAGCCATTGTGCTGCAGgtaaattgaaaactcaccgaactgggccagttgaccactccagtgtcgcc #### Syt7_ID2828_9 --> 0 - 1 Original Alignment GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAg gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAggtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga Alignment from CESAR GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAg gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAggtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga Alignment from Spaln_aa2Genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAGgtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga Alignment from Spaln_nt2Genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAGgtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga Alignment from Pairagon GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAGgtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga Alignment from Exonerate_protein2genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAGgtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga Alignment from Exonerate_coding2genome GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAGgtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga Alignment from GeneWise GGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAG gaacatgcccctacctatggcccaggcttttctgattccccaccccccagGGGAGCCGAGGGGAGCTGCTCTTGTCCCTGTGCTACAACCCCTCTGCCAACTCCATCATCGTGAACATTATCAAAGCTCGAAACCTCAAAGCCATGGACATTGGGGGCACTTCAGgtaattagctcaccatactagacacacctgtgaaggagtttcctttgaga #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCtgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCtgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gggcatgccagtgtattgtgggggacctctgactcctctccgctttccagATGGAGCGTAGCCCCAACATCTCCTGGCTCTTCCACTGCCGTATTGTCTgtaatcgatacttgatacattgaaggggtgtgtataatctgtttgagggt #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct #### Syvn1_ID1390_9 --> 1 - 2 Original Alignment gTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGag catccatcttgattactctacctggacaaaataaattctttcacttacaggTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGaggtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg Alignment from CESAR gTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGag catccatcttgattactctacctggacaaaataaattctttcacttacaggTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGaggtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg Alignment from Spaln_aa2Genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG catccatcttgattactctacctggacaaaataaattctttcacttacagGTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGAGgtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg Alignment from Spaln_nt2Genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG catccatcttgattactctacctggacaaaataaattctttcacttacagGTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGAGgtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg Alignment from Pairagon GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG catccatcttgattactctacctggacaaaataaattctttcacttacagGTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGAGgtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg Alignment from Exonerate_protein2genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG catccatcttgattactctacctggacaaaataaattctttcacttacagGTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGAGgtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg Alignment from Exonerate_coding2genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG catccatcttgattactctacctggacaaaataaattctttcacttacagGTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGAGgtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg Alignment from GeneWise GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG catccatcttgattactctacctggacaaaataaattctttcacttacagGTACCCAGATGCCACCCCCAAGGAGCTCCAGGCAATGGATAATGTCTGTATCATTTGCAGAGAGGAAATGGTGACTGGCGCTAAGAGATTGCCTTGCAACCACATCTTTCACATGAGgtaagcgtctagcagacctgaatcccacatagtggggattggctaatggg #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg aggtaattgatccactcccaatttacatcacggccttcctttccctccagctGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTggtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg aggtaattgatccactcccaatttacatcacggccttcctttccctccagctGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTggtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacatcacggccttcctttccctccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTGgtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacatcacggccttcctttccctccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTGgtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacatcacggccttcctttccctccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTGgtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacatcacggccttcctttccctccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTGgtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacatcacggccttcctttccctccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTGgtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG aggtaattgatccactcccaatttacatcacggccttcctttccctccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACTCCAGCTGCTGGCACAAGTCCTTCCGCCCCAGCATCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGGGTATGCCTCTACCTCCACCTTTTGgtgagttgcccatcgcccatcctcttggacctgaggtggaatactgaggc #### Taf5_ID10100_8 --> 1 - 2 Original Alignment gAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTcg agacaagtaattaagtttaatgagaatccaaataatctgccattctgcaggAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTtggtgagtacattaggatctacaaaatttttactacacaaaattgttcccac Alignment from CESAR gAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTcg agacaagtaattaagtttaatgagaatccaaataatctgccattctgcaggAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTtggtgagtacattaggatctacaaaatttttactacacaaaattgttcccac Alignment from Spaln_aa2Genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG agacaagtaattaagtttaatgagaatccaaataatctgccattctgcagGAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTTGgtgagtacattaggatctacaaaatttttactacacaaaattgttcccac Alignment from Spaln_nt2Genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG agacaagtaattaagtttaatgagaatccaaataatctgccattctgcagGAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTTGgtgagtacattaggatctacaaaatttttactacacaaaattgttcccac Alignment from Pairagon GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG agacaagtaattaagtttaatgagaatccaaataatctgccattctgcagGAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTTGgtgagtacattaggatctacaaaatttttactacacaaaattgttcccac Alignment from Exonerate_protein2genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG agacaagtaattaagtttaatgagaatccaaataatctgccattctgcagGAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTTGgtgagtacattaggatctacaaaatttttactacacaaaattgttcccac Alignment from Exonerate_coding2genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG agacaagtaattaagtttaatgagaatccaaataatctgccattctgcagGAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTTGgtgagtacattaggatctacaaaatttttactacacaaaattgttcccac Alignment from GeneWise GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG agacaagtaattaagtttaatgagaatccaaataatctgccattctgcagGAACTACTTACTCTCGTCTTCAGAGGATGGAACTGTCAGACTCTGGAGCCTTCAGACGTTCACTTGCTTGGTTGGTTATAAAGGACACAACTACCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTAGCTTGgtgagtacattaggatctacaaaatttttactacacaaaattgttcccac #### Taf5_ID10101_9 --> 1 - 0 Original Alignment gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaataggCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt Alignment from CESAR gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaataggCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt Alignment from Spaln_aa2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaatagGCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt Alignment from Spaln_nt2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaatagGCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt Alignment from Pairagon GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaatagGCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt Alignment from Exonerate_protein2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaatagGCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt Alignment from Exonerate_coding2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaatagGCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt Alignment from GeneWise GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG cctaataatccctctctgctgggttaaactctatttttattttttaatagGCTTTGGGCTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCTGCAGACAGGACTGTGCGGCTCTGGGATGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatgccacaccttcattattcctgcacataaatgcttccaaagttactt #### Tbc1d10c_ID396_8 --> 2 - 0 Original Alignment ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacaggcGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag Alignment from CESAR ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacaggcGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag Alignment from Spaln_aa2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacagGCGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag Alignment from Spaln_nt2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacagGCGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag Alignment from Pairagon GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacagGCGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag Alignment from Exonerate_protein2genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacagGCGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag Alignment from Exonerate_coding2genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacagGCGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag Alignment from GeneWise GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatccagcttgttttcctgtacacccaattttcattaacagGCGCTAAAGTATTGTTCCGTGTGGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCGCTACGAGCCATTCCACCTACCCAACTACAGGAAGAGGTCTTCATGACCCAGgtaagcatctctctttgcgaatcctcaatggttctggctgtgctgcatag #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG ccttagtaagtactcatacccatgcacttaatgtctgtttctcttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtgagtgattgggttgacagttgaaaaaaggacactgagacatctgaagc #### Tbc1d10c_ID402_2 --> 1 - 0 Original Alignment gCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaataggCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa Alignment from CESAR gCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaataggCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa Alignment from Spaln_aa2Genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaatagGCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa Alignment from Spaln_nt2Genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaatagGCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa Alignment from Pairagon GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaatagGCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa Alignment from Exonerate_protein2genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaatagGCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa Alignment from Exonerate_coding2genome GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaatagGCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa Alignment from GeneWise GCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTGGAAATGACCTTACACTGGGAGAAGACCATGTCCCGACGATACAAGAAG ccaaatccccttcctttacttttgatacttttgattctttttttcaatagGCTTTGTCAACCCTCTGCAGACCTCATCCGCCAGCGAGAGATGAAATGGGTTGAAATGGCCTTGCATTGGGAGAAGACCATGCCCCGACGATACAGGAAGgtgagcaacagtaaaccgacccgtctctgccccccaagtcttaggattaa #### Tbc1d12_ID7680_3 --> 0 - 2 Original Alignment GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCAcc gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTccgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg Alignment from CESAR GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCAcc gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTccgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg Alignment from Spaln_aa2Genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTCCgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg Alignment from Spaln_nt2Genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTCCgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg Alignment from Pairagon GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTCCgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg Alignment from Exonerate_protein2genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTCCgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg Alignment from Exonerate_coding2genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTCCgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg Alignment from GeneWise GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC gatggagattaggaaaaatctccacatatgacctgtgtttgtctctgcagGAGTATGAAACTCATACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGGCAGAGCTTCGCGCTGGAGCCACTTTCTACCACGGCACTGATTTTGGAGGATCGACCTCCgtgaaggctaggtgacctctaagttgtgagtgttaggtgagctccaagtg #### Tbc1d12_ID7688_11 --> 0 - 2 Original Alignment ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATtggtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag Alignment from CESAR ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATtggtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag Alignment from Spaln_aa2Genome ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag Alignment from Spaln_nt2Genome ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGA---TAGATTG tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag Alignment from Pairagon ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATT---TGATAGATTG tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag Alignment from Exonerate_protein2genome ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag Alignment from Exonerate_coding2genome ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag Alignment from GeneWise ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tctttttcatagacttctttgcaattttcattttccattttgcttcttagATGCTGAAGTATTTTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgtaagacactaagaaacatttaatatgatcaaaaacaaatgttaggcaag #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggtgggggtgtgacaggcattctcaagtttttaaattttttcttttctagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcatggagcgtgggtggatttgtcc #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCAcgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCAcgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcagattattgtctatgttggcttttcttcccacagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCACgtaagtgacctttctctcaggatgatattacaatatcctacctggtgcca #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAG---AGCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAG---AGCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG catgtaactcccattcactgtccatgggcatcttgttctttctttctcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTAGCTACTGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCGAGCACCGACACAGAAGAAACACCCAAAGAAGA---GCAGGCCAACAGgtacctgcacagggattggactaagtggtgacctgtgtaacctctgctcc #### Tcirg1_ID177_10 --> 2 - 0 Original Alignment ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagctCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgcaaggcccatccatgcattacaagggagggaacaaactagacactccac Alignment from CESAR ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagctCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgcaaggcccatccatgcattacaagggagggaacaaactagacactccac Alignment from Spaln_aa2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgcaaggcccatccatgcattacaagggagggaacaaactagacactccac Alignment from Spaln_nt2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgcaaggcccatccatgcattacaagggagggaacaaactagacactccac Alignment from Pairagon CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgcaaggcccatccatgcattacaagggagggaacaaactagacactccac Alignment from Exonerate_protein2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgcaaggcccatccatgcattacaagggagggaacaaactagacactccac Alignment from Exonerate_coding2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTGTGAAAGCTGCACAAAACAAGgcaaggcccatccatgcattacaagggagggaacaaactagacactccac Alignment from GeneWise CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCT tattcagtctcccctgcagtccttctgtttcctgtgctcttcttctctagCTCCCTACACCATCATCACATTCCCTTTTCTCTTCACTGTGATGTTTGGTGATGTTGGGCATGGATTACTTATGTTTCTTTTTGCCCTGGCAATGGTCCTCACTGAAAACCGTCCAGCTgtgaaagctgcacaaaacaaggcaaggcccatccatgcattacaagggagggaacaaactagacactccac #### Tcirg1_ID178_9 --> 0 - 1 Original Alignment AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTg agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTggtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg Alignment from CESAR AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTg agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTggtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg Alignment from Spaln_aa2Genome AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTG agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTGgtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg Alignment from Spaln_nt2Genome AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTG agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTGgtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg Alignment from Pairagon AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTG agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTGgtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg Alignment from Exonerate_protein2genome AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTG agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTGgtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg Alignment from Exonerate_coding2genome AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTG agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTGgtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg Alignment from GeneWise AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTG agtataaggagagactggaaatagaaggtgttttattttattgctgtcagAGTGAGGAAGGGGTGAGTGCTGTTGCCCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACAAACCGCTTTACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGACGCTATAGGAAAGTGAACCCTGgtgtgttccactggactccctcagtatgcccttgctttgcaaagggcagg #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtgagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACtggtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from CESAR CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACtggtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Spaln_aa2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Spaln_nt2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Pairagon CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Exonerate_protein2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Exonerate_coding2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from GeneWise CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtgagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg #### Tctn3_ID7993_8 --> 0 - 0 Original Alignment TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct Alignment from CESAR TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct Alignment from Spaln_aa2Genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct Alignment from Spaln_nt2Genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct Alignment from Pairagon TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct Alignment from Exonerate_protein2genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct Alignment from Exonerate_coding2genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct Alignment from GeneWise TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG tacaatgtatccctcactacaggacagagcctttctgcctctttccccagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCTCCTTTGCTGGCTGGAAACACATGTCAGAATATCATTTCCCAAgtaaaaaaagtctaatgcacctcacaaagaactgcatttagtctatttct #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta #### Tdrd1_ID12209_10 --> 2 - 1 Original Alignment gaAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACa tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagggAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACagtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc Alignment from CESAR gaAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACa tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagggAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACagtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc Alignment from Spaln_aa2Genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagGGAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACAgtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc Alignment from Spaln_nt2Genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagGGAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACAgtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc Alignment from Pairagon GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagGGAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACAgtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc Alignment from Exonerate_protein2genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagGGAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACAgtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc Alignment from Exonerate_coding2genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagGGAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACAgtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc Alignment from GeneWise GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA tgcttgtagtaatgtctcagtagaaataatgcagtgctttgatcctctagGGAAGCAGCTAGACCATGTGCTGGTGGAAATGGGATATGGAGTGAAACCTGGAGAGCAGAGTTCCACGGAACAGAGTGTGGACCACAgtaggtatacaggctcccattgaaacaggctcccattgactcttgtcagc #### Tdrd1_ID12213_14 --> 2 - 1 Original Alignment gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg aggcacaatttcactgacttgttgacactttcttcttgtcatctgaataggtGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTggtaacggtgatctgggcccaggagtgtgtgcatggaccagatgttaggag Alignment from CESAR gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg aggcacaatttcactgacttgttgacactttcttcttgtcatctgaataggtGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTggtaacggtgatctgggcccaggagtgtgtgcatggaccagatgttaggag Alignment from Spaln_aa2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG aggcacaatttcactgacttgttgacactttcttcttgtcatctgaatagGTGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTGgtaacggtgatctgggcccaggagtgtgtgcatggaccagatgttaggag Alignment from Spaln_nt2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG aggcacaatttcactgacttgttgacactttcttcttgtcatctgaatagGTGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTGG---TTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTGgtaacggtgatctgggcccaggagtgtgtgcatggaccagatgttaggag Alignment from Pairagon GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG aggcacaatttcactgacttgttgacactttcttcttgtcatctgaatagGTGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTGG---TTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTGgtaacggtgatctgggcccaggagtgtgtgcatggaccagatgttaggag Alignment from Exonerate_protein2genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCCCT aggcacaatttcactgacttgttgacactttcttcttgtcatctgaatagGTGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTGGTAACGgtgatctgggcccaggagtgtgtgcatggaccagatgttaggag Alignment from Exonerate_coding2genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCCCT aggcacaatttcactgacttgttgacactttcttcttgtcatctgaatagGTGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTGGTAACGgtgatctgggcccaggagtgtgtgcatggaccagatgttaggag Alignment from GeneWise GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG aggcacaatttcactgacttgttgacactttcttcttgtcatctgaatagGTGTAAAGCCATCACTAGGGATTTGGACTCCAGAAGCTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTCACAGTGAGAGTGGTG---GTTCTGGGAACCAGGGCTCTGGTGGAGCTCATTGACAAGACTGTGGCTCCTCATGTGAGTGCTTCTAAAGCCCTCATAGACTCAGGCTTTACCATCAAAGAGAAGGATGTGGCGGACAAAGGTAGCAGTATGCACACAACCAGTGgtaacggtgatctgggcccaggagtgtgtgcatggaccagatgttaggag #### Tectb_ID11562_5 --> 0 - 2 Original Alignment AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCcggtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa Alignment from CESAR AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCcggtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa Alignment from Spaln_aa2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCCGgtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa Alignment from Spaln_nt2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCCGgtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa Alignment from Pairagon AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCCGgtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa Alignment from Exonerate_protein2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCCGgtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa Alignment from Exonerate_coding2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCCGgtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa Alignment from GeneWise AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG actttgaaatgtcacaaagaagcctctacctgaactgttctctgtttaagAATGCCAAGTTTTCCACCAAGAAAGAAGCTCCCTTCGTTCTGGAAACATCTGAGATTGGCTCAGATTTATTTGCAGGGGTAGAAGCTAAAGGCCTGAGCATCCGgtgagtactgcatgagtacccttaaagataaacaaagacaaacagcagaa #### Tectb_ID11565_8 --> 0 - 1 Original Alignment AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGa gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGagtgagttgagtatttacatgtgtatccctcctgtctccacaaatctgggc Alignment from CESAR AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGa gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGagtgagttgagtatttacatgtgtatccctcctgtctccacaaatctgggc Alignment from Spaln_aa2Genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGAgtgagttgagtatttacatgtgtatccctcctgtctccacaaatctgggc Alignment from Spaln_nt2Genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGAgtgagttgagtatttacatgtgtatccctcctgtctccacaaatctgggc Alignment from Pairagon AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGAgtgagttgagtatttacatgtgtatccctcctgtctccacaaatctgggc Alignment from Exonerate_protein2genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGAgtgagttgagtatttacatgtgtatccctcctgtctccacaaatctgggc Alignment from Exonerate_coding2genome AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGA gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGAgtgagttgagtatttacatgtgtatccctcctgtctccacaaatctgggc Alignment from GeneWise AACTGTGACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGAGCAGGGCATTTTCCGGCCTCTGT--------- gatgttcattattcctttttctgttgtaccttcctccttccttccctcagAACTGTGACAAACGGAAGCGCATGCTACGTGACCAAACGGGAGGTGTCCTAGTTGTGGAGTTATCTCTGAGGAGTGAGTTGAGTATTTACATGTGTATCCCTCCTgtctccacaaatctgggc #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTagtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTagtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Exonerate_coding2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct #### Tex40_ID1869_3 --> 2 - 0 Original Alignment caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagccTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca Alignment from CESAR caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagccTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca Alignment from Spaln_aa2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca Alignment from Spaln_nt2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca Alignment from Pairagon CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca Alignment from Exonerate_protein2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca Alignment from Exonerate_coding2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca Alignment from GeneWise CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgtgaaccttacaaagactactcatgtgatcccttctctcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCGAACCTATTGGACAGAGCAGCAGAACAGGgttagtggatacaaccggggatactaccgttattgagttatcgggcagca #### Tjp2_ID5265_21 --> 0 - 0 Original Alignment GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACTGAGGAGCAAGAT---GCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt Alignment from CESAR GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACTGAGGAGCAA---GATGCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt Alignment from Spaln_aa2Genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACTGAGGAGCAA---GATGCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt Alignment from Spaln_nt2Genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACT---GAGGAGCAAGATGCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt Alignment from Pairagon GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACTGAGGAGC---AAGATGCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt Alignment from Exonerate_protein2genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACTGAGGAGCAA---GATGCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt Alignment from Exonerate_coding2genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACTGAGGAGCAA---GATGCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt Alignment from GeneWise GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG agaaaagaaacctaaagcacaagatcaatctgtttttctcttctccccagGCGAGAAGCCACAACAGAGAAGACTCCTTTGACTACTCCAAGTCCAACCTCCCCACTATATCTGGCAGTGAAATCCCAGGAGGATCCACCAAAGGATATCCACCCCCTATTGCTGCAAAGCCTGCCTTTGGGCGCCCTATCCTGAAGCCCTCCACTCCAGTACCTATGCCTAAGAGTGAAGAGGTTGGAGAGAGTACTGAGGAGCAA---GATGCTCCCAGATCAGTCCTGGGCAGGGTGAAAATATTTGAGAAGATGGACCACAAGACGAAGTTACAGAGAATGCAGGAACTTCAGGAGGCACAGAATGCAAGGgtacgtgttgtttttaatcacccaggcatcggtgagaaaggtggtttctt #### Tjp2_ID5266_20 --> 0 - 0 Original Alignment AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga Alignment from CESAR AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga Alignment from Spaln_aa2Genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga Alignment from Spaln_nt2Genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga Alignment from Pairagon AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga Alignment from Exonerate_protein2genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga Alignment from Exonerate_coding2genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga Alignment from GeneWise AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgcttgagcattcatggtgagcactctggctccttggcccacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtaagtgcttgagaagcccatgagaagaagagggggtgccttggagccga #### Tjp2_ID5270_17 --> 0 - 1 Original Alignment GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg tgctctctgactttgatgtcactatacaaattatgattatctttaagcagGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAggtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc Alignment from CESAR GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg tgctctctgactttgatgtcactatacaaattatgattatctttaagcagGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAggtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc Alignment from Spaln_aa2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgctctctgactttgatgtcactatacaaattatgattatctttaagcagGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAGgtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc Alignment from Spaln_nt2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgctctctgactttgatgtcactatacaaattatgattatctttaagcagGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAGgtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc Alignment from Pairagon GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgctctctgactttgatgtcactatacaaattatgattatctttaagcagGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAGgtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc Alignment from Exonerate_protein2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgctctctgactttgatgtcactatacaaattatgattatctttaagcagGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAGgtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc Alignment from Exonerate_coding2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgctctctgactttgatgtcactatacaaattatgattatctttaagcagGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAGgtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc Alignment from GeneWise ---GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgctctctgactttgatgtcactatacaaattatgattatctttaagCAGGACAAGCATGCCCTGCTTGGCGTTACCCCCAAAGCAGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTCAAGAAGACCTGTTCTCATCTTTTTACAGgtatgagaaaccttgaaaaagccccgtgcccggaatgagcaatgagaagc #### Tjp2_ID5274_13 --> 2 - 2 Original Alignment tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagtgTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCaggtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat Alignment from CESAR tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagtgTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCaggtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat Alignment from Spaln_aa2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagTGTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCAGgtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat Alignment from Spaln_nt2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagTGTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCAGgtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat Alignment from Pairagon TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagTGTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCAGgtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat Alignment from Exonerate_protein2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagTGTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCAGgtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat Alignment from Exonerate_coding2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagTGTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCAGgtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat Alignment from GeneWise TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtggggttgtctccaggtgggtagaacccctactttcccatctccctagTGTACAGAGATATCCTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTATATGATGGCAAGCTGGGTCACTGGCTGGCCGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTGATCCCCAACAAAAGCAGgtgagtagccaacttgactccctatgcattcttttgaacctgtctaacat #### Tjp2_ID5275_12 --> 0 - 1 Original Alignment GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACg tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATggtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat Alignment from CESAR GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACg tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATggtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat Alignment from Spaln_aa2Genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATGgtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat Alignment from Spaln_nt2Genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATGgtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat Alignment from Pairagon GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATGgtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat Alignment from Exonerate_protein2genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATGgtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat Alignment from Exonerate_coding2genome GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATGgtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat Alignment from GeneWise GTGAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCGGTCCTCTACCTGCTAGAAATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCGAGCAGACG tttctctctaatgtctcatatttaatttttgtttttattattttaaatagGTCAACACACAGGATTTCAGAGGGCTAGTCCGGGAAGATGCAGTCCTTTTCCTGTTAGAGATCCCCAAAGGTGAAACTGTGACCATTTTGGCTCAGAGCCAGGCAGATGgtaagttagtttggtgatcccttctatttgaggggagtgacaagaatgat #### Tjp2_ID5276_11 --> 1 - 0 Original Alignment cCCTAACACCAAA---ATGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagcCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg Alignment from CESAR cCCTAACACCAAAATG---GTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagcCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg Alignment from Spaln_aa2Genome CCCTAACACCAAAATG---GTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagCCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg Alignment from Spaln_nt2Genome CCCTAACACCAAAATGGTG---AGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagCCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg Alignment from Pairagon CCCTAACACCAAAA---TGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagCCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg Alignment from Exonerate_protein2genome CCCTAACACCAAAATG---GTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagCCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg Alignment from Exonerate_coding2genome CCCTAACACCAAAATG---GTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagCCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg Alignment from GeneWise CCCTAACACCAAAATG---GTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG ttgaatcggtggattatgtctcttctttcctagctcttctgtgcctccagCCCCAACACCAAGATGGTGGTGAGGTTCAAAAAGGGAGAAGGTGTGGGCCTCCGATTGGCTGGTGGGAACGATGTTGGAATATTTGTGGCCGGCATTCAGGAGGGCACCTCTGCAGAGCAGGAGGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtaattgagcctaccttgcaaggagctttgatagacttttttcagttagg #### Tjp2_ID5279_8 --> 2 - 2 Original Alignment atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag tttgttctgatatatttaactaaactggtttcattacttatttcttgtagatATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAaggtgagtttggtgtggatggtcatgattgtgttatcccatgaaccgaattt Alignment from CESAR atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag tttgttctgatatatttaactaaactggtttcattacttatttcttgtagatATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAaggtgagtttggtgtggatggtcatgattgtgttatcccatgaaccaccaag Alignment from Spaln_aa2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tttgttctgatatatttaactaaactggtttcattacttatttcttgtagATATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAAGgtgagtttggtgtggatggtcatgattgtgttatcccatgaaccgaattt Alignment from Spaln_nt2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tttgttctgatatatttaactaaactggtttcattacttatttcttgtagATATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAAGgtgagtttggtgtggatggtcatgattgtgttatcccatgaaccgaattt Alignment from Pairagon ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tttgttctgatatatttaactaaactggtttcattacttatttcttgtagATATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAAGgtgagtttggtgtggatggtcatgattgtgttatcccatgaaccgaattt Alignment from Exonerate_protein2genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tttgttctgatatatttaactaaactggtttcattacttatttcttgtagATATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAAGgtgagtttggtgtggatggtcatgattgtgttatcccatgaaccgaattt Alignment from Exonerate_coding2genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tttgttctgatatatttaactaaactggtttcattacttatttcttgtagATATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAAGgtgagtttggtgtggatggtcatgattgtgttatcccatgaaccgaattt Alignment from GeneWise ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG tttgttctgatatatttaactaaactggtttcattacttatttcttgtagATATCTCGGAAATAGAGTCCAATCGGTCTTTCTCCCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCATCCCTCTACTGAGAAGCTGAAGGAGAGGCCAAGgtgagtttggtgtggatggtcatgattgtgttatcccatgaaccgaattt #### Tjp2_ID5282_5 --> 0 - 1 Original Alignment GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGCAAAGCAAATGAAg tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGACAGT---GTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGggtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc Alignment from CESAR GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGCAAAGCAAATGAAg tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGACAGT---GTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGggtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc Alignment from Spaln_aa2Genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGCAAAGCAAATGAAG tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGAC---AGTGTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGGgtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc Alignment from Spaln_nt2Genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTT------TGTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAA------GCAAAGCAAATGAAG tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGACAG---TGTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGGgtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc Alignment from Pairagon GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTT------TGTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCT------AACCAAAAGCAAAGCAAATGAAG tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGACAG---TGTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGGgtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc Alignment from Exonerate_protein2genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGG---CCCATCGGGGTCCTTCTAACCAAAAGCAAAGCAAATGAAG tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGACAGTGTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGGgtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc Alignment from Exonerate_coding2genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGG---CCCATCGGGGTCCTTCTAACCAAAAGCAAAGCAAATGAAG tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGACAGTGTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGGgtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc Alignment from GeneWise GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCCATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAA------AGCAAAGCAAATGAAG tgcccttccaggggcatctctgttgcccggtggtctccactgtgtcccagGTGGTGAAGAGACCCCGGAAGGTCCAGGTAGCCCCGCTGCAAGGCAGCCCCCCTCTTAGTCATGATGACCGAGGTTTTGAAGTGATTGAGGAGTTTGATGGTAGAAGTTTCCACAGTGGCTATAGTGAAAGGAGCCGGCACAGCAGCCATGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGGCCCCATCAACGCACACAAAGCCGGGAGCGTGAGCGTAGCCGTGGTAGGAGCCTGGAACAGGGTTTGGACCAGGAAGACTATGGGCACAGCCGTGAACGCAGTCGTGGCCGGAGCCTGGAGCGTGGGCTGGACCATGACTTTGTTTCTGTGTCTAGGGACCACAGCCGTGGTCGTAGCATTGATAGGGACTACGACCGGGACTATGAGCGCTCGTATCATGAAGCTTTTGAACCTGATTATGGAGGTGGCTATAGCCCATCATATGACCGAAGAGCCCATCCCGAGACCCGCTACGAACGGAGCCATAGCCGAGAACACCTACATTCTCGAAGCCCAAGCCCCGAATCAAGGTCACAGCATGAATACAAGGGCCAACATGATCCAGACAGT---GTTGGGGTTCTTCTAACTAAAACCAAGAGCAAGGCAAATGAGGgtaagtgcatacaatgttagggcataagctacaactgatgcagcagcgtc #### Tjp2_ID5283_4 --> 1 - 0 Original Alignment aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagaGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc Alignment from CESAR aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagaGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc Alignment from Spaln_aa2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagAGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc Alignment from Spaln_nt2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagAGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc Alignment from Pairagon AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagAGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc Alignment from Exonerate_protein2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagAGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc Alignment from Exonerate_coding2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagAGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc Alignment from GeneWise AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC ttcgcagcctctcattggctctttaggggtgtttcctcctatctttttagAGAAAATGACAGGGTGGTCATGGTCAATGGCAGCCCCATGGAAGATTTACTCCACTCGTTTGCTGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCTGCCATCgtgagtctaggttaagattacaactggtgctagctgtacatgcttatatc #### Tle4_ID3621_16 --> 0 - 2 Original Alignment AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGaggtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca Alignment from CESAR AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCC---------TGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGaggtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca Alignment from Spaln_aa2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGAGgtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca Alignment from Spaln_nt2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGAGgtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca Alignment from Pairagon AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCC---------TGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGAGgtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca Alignment from Exonerate_protein2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGAGgtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca Alignment from Exonerate_coding2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGAGgtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca Alignment from GeneWise AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCTGCC---------TGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG tgattccatctctcttctgagctgtctttacccttgtctctcacttccagAATAGGGATAATTACATCCGTTCCTGCAGGTTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGAGAGGCCAGCACACTGTCAATCTGGGACCTGGCTGCACCGACTTCACGTATCAAGGCAGAACTGACATCCTCAGCCCCTGCTGCCCCTGCATGCTATGCTCTGGCTATCACCCCTCACTCCAAGGTCTGCTTCTCATGCTGCAGTGATGGCAATATTGCAGTATGGGACCTGCACAACCAGACACTTGTGAGgtgaggtagctgaatttacttctgtgtggaaaggtagtgctaacttacca #### Tle4_ID3624_14 --> 0 - 2 Original Alignment GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAAcc gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAAccgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga Alignment from CESAR GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAAcc gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAAccgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga Alignment from Spaln_aa2Genome GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAACC gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAACCgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga Alignment from Spaln_nt2Genome GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAACC gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAACCgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga Alignment from Pairagon GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAACC gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAACCgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga Alignment from Exonerate_protein2genome GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAACC gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAACCgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga Alignment from Exonerate_coding2genome GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAACC gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAACCgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga Alignment from GeneWise GTGGGATTTGATCCACACCATCACATGCGAGTGCCAGCAATACCTCCAAATCTAACAGGCATTCCAGGAGGAAAACC gtgcagggcatacataatatatccttctctctcgcattgctctctcgcagGTGGGATTTGATCCTCACCATCACATGCGAGTGCCAGCAATACCTCCAAACCTGACAGGCATTCCAGGAGGAAAACCgtgagtggttattatctattggatgtgttatgcaatgctttcattctgga #### Tle4_ID3629_10 --> 0 - 0 Original Alignment GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac Alignment from CESAR GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac Alignment from Spaln_aa2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac Alignment from Spaln_nt2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac Alignment from Pairagon GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac Alignment from Exonerate_protein2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac Alignment from Exonerate_coding2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac Alignment from GeneWise GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG tgcagtctttcctgctagtgataagaatcacatcctctccatttcactagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgagttagttactagccctgctcttgatgtccattggcaggaggcacac #### Tle4_ID3668_5 --> 0 - 0 Original Alignment GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt Alignment from CESAR GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt Alignment from Spaln_aa2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt Alignment from Spaln_nt2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt Alignment from Pairagon GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt Alignment from Exonerate_protein2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt Alignment from Exonerate_coding2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt Alignment from GeneWise GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttataactaccagattactttcttatattcctcttgtctctgctcttcagGCAGAGATTGTGAAGCGGCTAAATGCTATTTGTGCACAGGTCATTCCTTTCCTGTCACAAGAAgtgagtttatagacctgataactaagagttgtggaattttatcaactgtt #### Tll2_ID8100_19 --> 0 - 1 Original Alignment ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAg cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAggtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt Alignment from CESAR ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAg cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAggtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt Alignment from Spaln_aa2Genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt Alignment from Spaln_nt2Genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt Alignment from Pairagon ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt Alignment from Exonerate_protein2genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt Alignment from Exonerate_coding2genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt Alignment from GeneWise ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG cctactggcagatcagatccctgcctcactgttggtttgttatattgcagACATTCAGTGAGTTTGAGATTGAGCAGCACCAGGAATGTGCCTATGACCATCTGGAGCTGTATGACGGGACAGACAGCTTGGCCCCCATTCTTGGCCGCTTCTGTGGCAGCAAAAAACCAGATCCTGCGGTGGCAACGGGCAGCAGCCTATTTCTCAGGTTTTACTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaataagcctaatggctccagttgagcatgcttcaggccttgttggtgt #### Tll2_ID8116_8 --> 1 - 1 Original Alignment aGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAg cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagaGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAggtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt Alignment from CESAR aGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAg cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagaGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAggtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt Alignment from Spaln_aa2Genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagAGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAGgtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt Alignment from Spaln_nt2Genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagAGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAGgtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt Alignment from Pairagon AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagAGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAGgtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt Alignment from Exonerate_protein2genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagAGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAGgtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt Alignment from Exonerate_coding2genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagAGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAGgtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt Alignment from GeneWise AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttctttatcccttcttttttcctttatcctgttgaatcctgctccccagAGGAGTTTTTTTAGACACTATGCTCCCCCGTCGGGACGACAATGGCATCAGGCCGACCATTGGCCAACGCGTGAGACTCAGTCAGGGTGAGATAGCTCAGGCCAGGAAGCTGTACAAATGTCCAGgtgagcgtggatcatgagtaagcttccactgcttcacaatgcctgcttgt #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATggtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATggtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATGgtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATGgtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATGgtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATGgtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATGgtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc Alignment from GeneWise GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgcggtgaaatgatcctcggcctgttctgcatgtcttatgctctgaagGTAGCTGAAGGCTTGGAACTGAAGGACAAGAGTCGCTTGCGTTACCCTATTAATGgtgagtgaggtacccccccctccatgaatcacagttaaagtgtagattcc #### Tm9sf3_ID8146_4 --> 2 - 0 Original Alignment gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcaggcATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac Alignment from CESAR gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcaggcATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac Alignment from Spaln_aa2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac Alignment from Spaln_nt2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac Alignment from Pairagon GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac Alignment from Exonerate_protein2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac Alignment from Exonerate_coding2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac Alignment from GeneWise GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttggtagctaggcggtcatacattgtattcgctttttgtatccacgcagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAACAAGCGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCGgtctggtttcaagtgattatttatagtaaaaggaggttgtgttggtaaac #### Tm9sf3_ID8147_3 --> 2 - 1 Original Alignment atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagatGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGggtgagttgactattccggatcctgatgagaacatgcttctcatatttgac Alignment from CESAR atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagatGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGggtgagttgactattccggatcctgatgagaacatgcttctcatatttgac Alignment from Spaln_aa2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagATGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtgagttgactattccggatcctgatgagaacatgcttctcatatttgac Alignment from Spaln_nt2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagATGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtgagttgactattccggatcctgatgagaacatgcttctcatatttgac Alignment from Pairagon ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagATGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtgagttgactattccggatcctgatgagaacatgcttctcatatttgac Alignment from Exonerate_protein2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagATGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtgagttgactattccggatcctgatgagaacatgcttctcatatttgac Alignment from Exonerate_coding2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagATGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtgagttgactattccggatcctgatgagaacatgcttctcatatttgac Alignment from GeneWise ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttactacgtattgaaaatgcataggttaaaattgtcttatatctctgcagATGATGTGATGCCAGGCACATACTGTGAGATTGACTTAGATAAAGAGAAGAGAGATGCATTCGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtgagttgactattccggatcctgatgagaacatgcttctcatatttgac #### Tmc1_ID4831_12 --> 0 - 0 Original Alignment ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg Alignment from CESAR ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg Alignment from Spaln_aa2Genome ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg Alignment from Spaln_nt2Genome ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg Alignment from Pairagon ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg Alignment from Exonerate_protein2genome ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg Alignment from Exonerate_coding2genome ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg Alignment from GeneWise ATGAACATGGTAATGTCCCTCCTGGGGATGTTCTGTCCCACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTCATTGCTCTGAAGTGGCTCCTGGGGCGCATTTTTGCTCTTCTTCTAGGCAACTTGTATGTATTCATTCTCGCCTTGATGGATGAGATTAACAACAAG actcaggaccactctggggacctttccagggactttctggctgattccagATGAATATGGTAATGTCCCTCCTGGGGATGTTCTGCCCAACCCTGTTTGACTTATTTGCTGAACTGGAAGATTACCATCCTCTTATTGCTCTGAAATGGCTCCTGGGGCGCATCTTTGCTATTCTTTTAGGTAACTTGTATGTCTTTATACTTGCCTTGATGGATGAGATTAATAACAAGgtgccactcagttcatgattctccttgtcatcagtgtggcaatttccctg #### Tmc1_ID4833_10 --> 1 - 0 Original Alignment gATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcaggATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt Alignment from CESAR gATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcaggATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt Alignment from Spaln_aa2Genome GATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcagGATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt Alignment from Spaln_nt2Genome GATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcagGATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt Alignment from Pairagon GATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcagGATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt Alignment from Exonerate_protein2genome GATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcagGATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt Alignment from Exonerate_coding2genome GATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcagGATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt Alignment from GeneWise GATGACCAAAAATATTGGTGACGATGGTGGTGGCGATGACAACACTTTCAACTTCAGCTGGAAGGTGTTCTGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCGACAACAAGTTTAACTCTATCACGATGAACTTTAAG tacctcttattctcctctctagctgctgttcttgtctgccttggtttcagGATGACCAAAAACATTGGTGATGATGGTGGTGGTGATGACAACTCTTTCAACTTTAGCTGGAAAGTG---TGTAGCTGGGACTATCTGATTGGTAACCCTGAAACAGCCAAGAAAAAATTTAACTCTATTACAATGAACTTCAAGgtgagagcataggccccagaaggtgacctccaagatgcacataacaatgt #### Tmc1_ID4839_6 --> 0 - 1 Original Alignment AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAa atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAagtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc Alignment from CESAR AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAa atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAagtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc Alignment from Spaln_aa2Genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc Alignment from Spaln_nt2Genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc Alignment from Pairagon AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc Alignment from Exonerate_protein2genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc Alignment from Exonerate_coding2genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc Alignment from GeneWise AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA atctagaaatatgagataatattctttattaacgttggcctcatttctagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtaagtggttaccctaactagagaacgaaaactctccatacaaagtttcc #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagcTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagcTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca #### Tmem2_ID4938_2 --> 2 - 1 Original Alignment agAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAg cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagacAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAggtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct Alignment from CESAR agAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAg cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagacAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAggtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct Alignment from Spaln_aa2Genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagACAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAGgtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct Alignment from Spaln_nt2Genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagACAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAGgtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct Alignment from Pairagon AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagACAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAGgtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct Alignment from Exonerate_protein2genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagACAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAGgtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct Alignment from Exonerate_coding2genome AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagACAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAGgtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct Alignment from GeneWise AGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAG cttcataggatcttgggagcaggagtgaccctcacctgcccacttcccagACAATTGCCCTGATCAAAACCCTCGTCTCAGGAACTGGGACCCGGGGGAAGACTCAGTAAAGCACATTGTCATCAAGGAGGGGGATTTGTTCCGCCTGACTTCAGATGCAACAGTTGACTCTATAGTCATTCAGGATGGAGgtgagtagtagtccttgcctataggtgcgtgcctatagacaaggactgct #### Tmem2_ID4955_16 --> 0 - 0 Original Alignment GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc Alignment from CESAR GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc Alignment from Spaln_aa2Genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc Alignment from Spaln_nt2Genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc Alignment from Pairagon GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc Alignment from Exonerate_protein2genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc Alignment from Exonerate_coding2genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc Alignment from GeneWise GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatgttaagtgagcctgtaggacagcattcagtagccctgcctcctgcagGTCTCTCTGAACATCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATTCACCATCCAAACTGTGTCAATGTTACCAAGTGGAATGCTGTGATTTGTAGTGGGAGATATGCCCAGgtgagtagggcaggtggtccaggcccactgctcttcatgatggtggtctc #### Tmem2_ID4964_21 --> 0 - 2 Original Alignment GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAaggtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact Alignment from CESAR GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAaggtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact Alignment from Spaln_aa2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact Alignment from Spaln_nt2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact Alignment from Pairagon GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact Alignment from Exonerate_protein2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact Alignment from Exonerate_coding2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact Alignment from GeneWise GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG taccagtgatgtcaatagatatgacattcctctctccatcccttttccagGTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGAGCCCTTCTTCTCATTGTGGATGCATGCAGTGTACCCTTCCGGGTGAAGGAAAAACATATGTTCCTTTCTGCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgagtcagcttgcccaccagaggagaaacttataatcagtgactgtact #### Tnks2_ID7181_2 --> 2 - 1 Original Alignment gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcaggcTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTggtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg Alignment from CESAR gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcaggcTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTggtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg Alignment from Spaln_aa2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcagGCTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTGgtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg Alignment from Spaln_nt2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcagGCTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTGgtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg Alignment from Pairagon GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcagGCTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTGgtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg Alignment from Exonerate_protein2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcagGCTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTGgtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg Alignment from Exonerate_coding2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcagGCTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTGgtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg Alignment from GeneWise GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttctttgcattgtgacaatcatctagctgtgctgttctctgtgcagGCTTTGGGCGGAAGGATGTAGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTGGTCATACTGAAGTGGTCAATCTTCTTTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACCCCTCTCCACGAAGCTGCAATTAAAGGCAAAATCGATGTGTGCATTGgtgagcttatattttttagatcttctgtgagttgtaattatcctgagatg #### Tnks2_ID7188_9 --> 2 - 0 Original Alignment atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagacGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt Alignment from CESAR atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAA------AAACATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagacGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt Alignment from Spaln_aa2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAA------AAACATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagACGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt Alignment from Spaln_nt2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACA------TCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagACGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt Alignment from Pairagon ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAA------AAACATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagACGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt Alignment from Exonerate_protein2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAA------AAACATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagACGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt Alignment from Exonerate_coding2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAA------AAACATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagACGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt Alignment from GeneWise ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAA------CATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG actttgttactatctaggttctatgttgtttccctatcttgcttctgtagACGAATTTAAGGGACATTCACTTCTGCAAGCTGCACGAGAAGCTGGTGTTACAAGAATCAAAAAACAGAAACATCTCCCACTGGAAATGGTCAATTTCAAGCATCCTCAGACGCATGAAACGGCACTGgtaaattttcatacatgagcatttaaaatacataccataaccctgaagtt #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggtctgggtgctcgtgtgcgtcctgatcagcatttatttctgcttttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACGTTTTTGAGGGAGATGCATCATGTGTTGCTTGAGgtgggtaacctggatcattgtgcccaggcctccatggttaccagcgttca #### Trpm3_ID5036_3 --> 1 - 0 Original Alignment gTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcaggTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg Alignment from CESAR gTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcaggTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg Alignment from Spaln_aa2Genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcagGTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg Alignment from Spaln_nt2Genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcagGTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCG---CTCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg Alignment from Pairagon GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcagGTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCG---CTCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg Alignment from Exonerate_protein2genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcagGTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg Alignment from Exonerate_coding2genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcagGTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg Alignment from GeneWise GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagtgatggcagaccagagaaccctatgttcatctgccttttgcagGTGTTGCTGTGGCCGCCTCATAGGCCAGCATGTTGGACTCACTCCTAGTATTTCTGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAGTCAGAGGAATGGTCAATCAGCAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATCATTGAATTCCAAGGGGGTGGTCATTCTAACAAAGCTATGgtgtgttgaaagacatcaggtacattttctccaagcagatgggctagtgg #### Trpm3_ID5042_7 --> 2 - 2 Original Alignment gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg cattctgactttatctctttttttccttgtctgtttccctcttcctccaggaATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTgggtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa Alignment from CESAR gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg cattctgactttatctctttttttccttgtctgtttccctcttcctccaggaATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTgggtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa Alignment from Spaln_aa2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttccttgtctgtttccctcttcctccagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTGGgtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa Alignment from Spaln_nt2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATA---CCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttccttgtctgtttccctcttcctccagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTGGgtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa Alignment from Pairagon GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttccttgtctgtttccctcttcctccagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTGGgtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa Alignment from Exonerate_protein2genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttccttgtctgtttccctcttcctccagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTGGgtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa Alignment from Exonerate_coding2genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttccttgtctgtttccctcttcctccagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTGGgtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa Alignment from GeneWise GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttccttgtctgtttccctcttcctccagGAATTGGTCAAGGGGTTCCAGTGGTGGCTCTTCTTGTGGAAGGGGGACCCAATGTTATCGCAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTGCCAGTTGTTGTCTGTGACGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGGCATGAATATTCAGAAGAAAGTGGgtgagtcaatgctagatcctgctagtgacaccatagttaaacctctgcaa #### Trpm3_ID5055_11 --> 0 - 0 Original Alignment GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg Alignment from CESAR GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg Alignment from Spaln_aa2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg Alignment from Spaln_nt2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg Alignment from Pairagon GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg Alignment from Exonerate_protein2genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg Alignment from Exonerate_coding2genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg Alignment from GeneWise GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG aacagtatttccctgacatgggcagacactgttgcatctgttcctaaaagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaggtctggccagtgaaagtgcctttttgttattccttctgtcctgttg #### Trpm3_ID5058_14 --> 0 - 0 Original Alignment CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaagcaataataactttgtctagactttttttcctaccagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt Alignment from CESAR CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaagcaataataactttgtctagactttttttcctaccagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt Alignment from Spaln_aa2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaagcaataataactttgtctagactttttttcctaccagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt Alignment from Spaln_nt2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaagcaataataactttgtctagactttttttcctaccagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt Alignment from Pairagon CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaagcaataataactttgtctagactttttttcctaccagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt Alignment from Exonerate_protein2genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaagcaataataactttgtctagactttttttcctaccagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt Alignment from Exonerate_coding2genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaagcaataataactttgtctagactttttttcctaccagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt Alignment from GeneWise taccacagcgaaagcaataataactttgtctagactttttttcctaccagcccaaagccttaaaacttctgggaatggaggtaagtgttttcctaaaattttacaatcaattatagatatgtgtccattt #### Trpm3_ID5064_19 --> 0 - 0 Original Alignment CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa Alignment from CESAR CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa Alignment from Spaln_aa2Genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa Alignment from Spaln_nt2Genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa Alignment from Pairagon CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa Alignment from Exonerate_protein2genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa Alignment from Exonerate_coding2genome CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa Alignment from GeneWise CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAG aactaacgggccgctagatagactaatttaactgcttactcttcctctagCTGGCGTATATTGGATTCCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGgtaagcagatgacataatgatgaataaattaaataatatataagtggaaa #### Trpm3_ID5067_21 --> 0 - 1 Original Alignment ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAg gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAggtgtgttattttcaatcaaataatgccttttttaactccactcattacaa Alignment from CESAR ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAg gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAggtgtgttattttcaatcaaataatgccttttttaactccactcattacaa Alignment from Spaln_aa2Genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAGgtgtgttattttcaatcaaataatgccttttttaactccactcattacaa Alignment from Spaln_nt2Genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAGgtgtgttattttcaatcaaataatgccttttttaactccactcattacaa Alignment from Pairagon ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAGgtgtgttattttcaatcaaataatgccttttttaactccactcattacaa Alignment from Exonerate_protein2genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAGgtgtgttattttcaatcaaataatgccttttttaactccactcattacaa Alignment from Exonerate_coding2genome ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAGgtgtgttattttcaatcaaataatgccttttttaactccactcattacaa Alignment from GeneWise ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAG gtgctcaatcatgcttcatctcttctatgttttaacatatcttttaacagATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAACCATCTTGGAAACTGGCCAAGAATATCTTCTATATGCCTTATTGGATGATTTATGGTGAAGTATTTGCTGACCAGATAGACCGTAAGCAAGTTTATGATTCTCATACACCAAAGTCAGgtgtgttattttcaatcaaataatgccttttttaactccactcattacaa #### Trpm6_ID4468_6 --> 2 - 0 Original Alignment gaGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgataggaGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca Alignment from CESAR gaGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgataggaGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca Alignment from Spaln_aa2Genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgatagGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca Alignment from Spaln_nt2Genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgatagGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca Alignment from Pairagon GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgatagGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca Alignment from Exonerate_protein2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgatagGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca Alignment from Exonerate_coding2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgatagGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca Alignment from GeneWise GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT tgatcaattattatctgtgagctcagctggagcccatgtgtgtgtgatagGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATTCCTCTAAGTCTTTGAGAAAAATCTGGACAGTTGGAATTCCCCCTTGGGGAGTCATTGAGAATCAGCGAGAGCTGGTTGGAAAGGATgtaggtagccttccacctcacttttcaatgcacctttcaaaatctcgaca #### Trpm6_ID4475_13 --> 0 - 0 Original Alignment AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg Alignment from CESAR AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg Alignment from Spaln_aa2Genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg Alignment from Spaln_nt2Genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg Alignment from Pairagon AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg Alignment from Exonerate_protein2genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg Alignment from Exonerate_coding2genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg Alignment from GeneWise AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctgcctccagtatatgagggtgtttcctatctctttccttcatctctcagAAACGGGGGCTGACTAATAAATTTTTGCGTCATCTTGTCCAGGATATTAAGCAGgtaagttaaatatgagagtctaagcattagttcagaacatgagctaagtg #### Trpm6_ID4478_15 --> 0 - 0 Original Alignment AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg Alignment from CESAR AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg Alignment from Spaln_aa2Genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg Alignment from Spaln_nt2Genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg Alignment from Pairagon AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg Alignment from Exonerate_protein2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg Alignment from Exonerate_coding2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg Alignment from GeneWise AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cctttttttttttgtttatttccttttaagttagtgtcttctatctgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCCCAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGAAGGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaagtcccatagttgatagagttaacaacaaagatggttttgcagatgg #### Trpm6_ID4484_21 --> 0 - 0 Original Alignment ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt Alignment from CESAR ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt Alignment from Spaln_aa2Genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt Alignment from Spaln_nt2Genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt Alignment from Pairagon ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt Alignment from Exonerate_protein2genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt Alignment from Exonerate_coding2genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt Alignment from GeneWise ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG ccatctccctctatcactctctttttttaatcctcactggctctctgcagTTCTGCATTACAGAACCAAGCAAATTTAAGCAGAAGGTGAAAATGTGGCTCAGTGAATACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCAGTTGGCTTTGGCCTACGGTGGGGGCATCCCCCTTTGCAAACTGCAGGCCGACTCATCTACTGCATAGAAGTCATACTTTGGTTCTCTCGACTGATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCCTATGTAACCATGATTGCCAAAACGgtgagtgttgtttttaactaattgccaaagtggtgaatgtgtcgccattt #### Trpm6_ID4487_24 --> 1 - 1 Original Alignment cAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAa gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagcAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGagtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg Alignment from CESAR cAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAa gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagcAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGagtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg Alignment from Spaln_aa2Genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagCAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg Alignment from Spaln_nt2Genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagCAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg Alignment from Pairagon CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagCAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg Alignment from Exonerate_protein2genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagCAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg Alignment from Exonerate_coding2genome CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagCAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg Alignment from GeneWise CAACATTTACTTAGATATAAAATCCATCTCGAACAAGCTCTGGAAATACAACCGCTATCGCTACATCATGACCTACCACCAGAAGCCCTGGCTGCCTCCTCCCTTTATCCTGCTGAATCACCTGTGTCTCCTCCTCCGAGGTCTGTGCTGTCGCCCAGCCCCACAGGACCAGGAAGAGGGGGACGGAGGGCTAA gtggattaaaagttctctcactcactgtttcctgggctggttcttcctagCAACATGTACTTAGACATAATCTCCATCTCTAACAAGCTCTGGAGATACAACCGCTATCACTACATTATGACCTACCACCAGAAGCCCTGGCTACCCCCTCCTTTCATCTTGCTCAATCATCTGTGTCTCCTGCTCCGAGGTTTGTGCTGTCACCCAGCCCCACAGGACCAGGAAGAGGGGGATGGAGGGCTGAgtaagtttccttggaggaacagaggggaggaagggaaagtgtagacattg #### Trpm6_ID4488_25 --> 2 - 2 Original Alignment agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagaaCTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAaggtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc Alignment from CESAR agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagaaCTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAaggtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc Alignment from Spaln_aa2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc Alignment from Spaln_nt2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc Alignment from Pairagon AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc Alignment from Exonerate_protein2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc Alignment from Exonerate_coding2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc Alignment from GeneWise AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagaatggctttggttgtaaattttgtgcttctgccagAACTCTACCTCACTCGGGATGACTTACAAAAGCTTCATGATTTTGAAGAGCAATGCGTGGGAGAATATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAGgtgagtaattacaccttgatccctaaactgctaccagatcagtttcatcc #### Trpm6_ID4490_26 --> 1 - 1 Original Alignment gGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACa aaacgataaacttctaccaggctagtactctttctctttgtacttaacaggGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGGTG---GAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATagtaagtaacaaatgtataaaacttctattttacttattttgatcatatga Alignment from CESAR gGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACa aaacgataaacttctaccaggctagtactctttctctttgtacttaacaggGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGGTG---GAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATagtaagtaacaaatgtataaaacttctattttacttattttgatcatatga Alignment from Spaln_aa2Genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA aaacgataaacttctaccaggctagtactctttctctttgtacttaacagGGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGGTG---GAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATAgtaagtaacaaatgtataaaacttctattttacttattttgatcatatga Alignment from Spaln_nt2Genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA aaacgataaacttctaccaggctagtactctttctctttgtacttaacagGGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGG---TGGAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATAgtaagtaacaaatgtataaaacttctattttacttattttgatcatatga Alignment from Pairagon GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA aaacgataaacttctaccaggctagtactctttctctttgtacttaacagGGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGG---TGGAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATAgtaagtaacaaatgtataaaacttctattttacttattttgatcatatga Alignment from Exonerate_protein2genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA aaacgataaacttctaccaggctagtactctttctctttgtacttaacagGGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGGTG---GAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATAgtaagtaacaaatgtataaaacttctattttacttattttgatcatatga Alignment from Exonerate_coding2genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA aaacgataaacttctaccaggctagtactctttctctttgtacttaacagGGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGGTG---GAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATAgtaagtaacaaatgtataaaacttctattttacttattttgatcatatga Alignment from GeneWise GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA aaacgataaacttctaccaggctagtactctttctctttgtacttaacagGGTATCAGAGATGTTTTTCCAACTGAAGGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCTCTGCTCTCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCCGCTGTTGATAGCTCGCAAGAAGAGGAGATCCTTTTGGCGAACAGAAAGCATTCTACTTGCAGGAAACGTCCCCACAGTTGGATTAATGTCATCTGTGCAAAGGTACTAAGTGACATGGAAAGCCGTGGGAAGAAGAAACTCCAGTACTATAGCATGCCCCCTTCTCTGCTGAGGAGCCTTGCCAGAAGTCGACTCCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACACGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACAGCTTCTGGGATTTCTCACATAAGACAAGCCCATTCTAAGTATGGCCAGTTTCTCCTGGTGCCGTCTTCTGGAAAGCAAGTTCCTTTGTCCCTGGAAACCCCACCACATCTCTTCAGATCATCAGAGGAGGCAGGTATAGATGGTCTGGTG---GAGCATATACCCCAAAGTGATCTCACCACCCATTTGCCTCAGGAAACCCCTGCTGCTTCCCACCAGGCGTTGGTGGCCGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAAGGCAGAACAAGACTTGCTTGCATTTAGTGGCACATCTGCTCCTATGACATTGACTTCTCTTCCTTCAAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAGACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGACTACTTTCTTCACACTGGGGGTAGATCTGGGCTGGATAATTCCAGAAAACTAGTGCAGAGTTGTGAGTGCCCAGCAGGACCTTGGACCCAAGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCCCTTATTAAGAGTCATAGTTTTAGATTCCAAAAGGAGGAGAAGCTGAGGAAGACTTGGAAGAACAATAgtaagtaacaaatgtataaaacttctattttacttattttgatcatatga #### Trpm6_ID4491_27 --> 2 - 0 Original Alignment gtCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttaggtCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc Alignment from CESAR gtCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttaggtCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc Alignment from Spaln_aa2Genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttagGTCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc Alignment from Spaln_nt2Genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttagGTCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc Alignment from Pairagon GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttagGTCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc Alignment from Exonerate_protein2genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttagGTCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc Alignment from Exonerate_coding2genome GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttagGTCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc Alignment from GeneWise GTCATTCAAAATCCTTAGAGACCAGGTCCACATGGCTCAAAGCAAAACTGCTAACCAAGACCCGGAGCCTGTCAAAGAAGAAGAGGAAGACCCAAGGGCTCCAGGTGCCG atcactcaaattggttccagcattctcatcagacctgcctttccttttagGTCATTCCAAATCCTTGGAGACCAGGTCAACATGGCTCAAAGCAAAACTGCTAAGCAGGACTCGGAGCTTGTCAAAGAAGAAAAGGAAGACGCAAGGGCTCCAGGTGCCGgtgagtttacctcttgctgtacagccaagtctgtgaacccaccatggctc #### Trpm6_ID4504_34 --> 2 - 0 Original Alignment caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagctGGCGAGGAAGTGACTATCTACAACCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGTTGCAGGATAGTAGAGCTGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTCATTAGCACCTGGTCTGAGGATGATGTTCTTAAGCCTGGGCAGGTTTTCATTGTAAAGTCTTTTCTGCCCGAAGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGGgtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc Alignment from CESAR caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagctGGCGAGGAAGTGACTATCTACAACCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGTTGCAGGATAGTAGAGCTGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTCATTAGCACCTGGTCTGAGGATGATGTTCTTAAGCCTGGGCAGGTTTTCATTGTAAAGTCTTTTCTGCCCGAAGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGGgtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc Alignment from Spaln_aa2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagCTGGCGAGGAAGTGACTATCTACAACCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGTTGCAGGATAGTAGAGCTGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTCATTAGCACCTGGTCTGAGGATGATGTTCTTAAGCCTGGGCAGGTTTTCATTGTAAAGTCTTTTCTGCCCGAAGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGGgtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc Alignment from Spaln_nt2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagCTGGCGAGGAAGTGACTATCTACAACCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGTTGCAGGATAGTAGAGCTGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTCATTAGCACCTGGTCTGAGGATGATGTTCTTAAGCCTGGGCAGGTTTTCATTGTAAAGTCTTTTCTGCCCGAAGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGGgtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc Alignment from Pairagon CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagCTGGCGAGGAAGTGACTATCTACAACCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGTTGCAGGATAGTAGAGCTGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTCATTAGCACCTGGTCTGAGGATGATGTTCTTAAGCCTGGGCAGGTTTTCATTGTAAAGTCTTTTCTGCCCGAAGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGGgtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc Alignment from Exonerate_protein2genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagCTGGCGAGGAAGTGACTATCTACAACCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGTTGCAGGATAGTAGAGCTGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTCATTAGCACCTGGTCTGAGGATGATGTTCTTAAGCCTGGGCAGGTTTTCATTGTAAAGTCTTTTCTGCCCGAAGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGGgtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc Alignment from Exonerate_coding2genome tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagctggcgaggaagtgactatctacaaccttgaagacagctcccccctgactcttgataagagcatatcctcctggttgcaggatagtagagctgctatgattcgggtgctgtcacaggaagaaatggatgggggtctccgcaaagccatgcgagtcattagcacctggtctgaggatgatgttcttaagcctgggcaggttttcattgtaaagtcttttctgcccgaagttgtgcagacatggtataaaatctttcaggaaagcactgtgcttcatctttgccttagggtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc Alignment from GeneWise CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG tcctgcatcatcagggtattttactttaatagttgttgctgtgcttctagCTGGCGAGGAAGTGACTATCTACAACCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGTTGCAGGATAGTAGAGCTGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTCATTAGCACCTGGTCTGAGGATGATGTTCTTAAGCCTGGGCAGGTTTTCATTGTAAAGTCTTTTCTGCCCGAAGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGGgtacctcaaaatattggatcccaagacctcataaaggggaaccaagaccc #### Trpm6_ID4510_37 --> 2 - 2 Original Alignment gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctaggtGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAAcagtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc Alignment from CESAR gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctaggtGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAAcagtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc Alignment from Spaln_aa2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc Alignment from Spaln_nt2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc Alignment from Pairagon GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc Alignment from Exonerate_protein2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc Alignment from Exonerate_coding2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc Alignment from GeneWise GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttacttgtcaaacataaatgtaatctcttcattcctagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtatgttagtttaggccctattgcgcttgctagaagagttactgcaattc #### Trub1_ID12382_2 --> 2 - 1 Original Alignment aaGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGg gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagaaGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGggtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc Alignment from CESAR aaGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGg gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagaaGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGggtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc Alignment from Spaln_aa2Genome AAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGG gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagAAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGGgtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc Alignment from Spaln_nt2Genome AAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGG gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagAAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGGgtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc Alignment from Pairagon AAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGG gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagAAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGGgtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc Alignment from Exonerate_protein2genome AAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGG gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagAAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGGgtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc Alignment from Exonerate_coding2genome AAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGG gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagAAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGGgtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc Alignment from GeneWise AAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGG gttatctcatccctgacttccagtaactctgtgttctattgcctttgcagAAGCTGGAATGCCTTCTCCAGAATGGAACAAGAGGCAGAAGCAGACATTGAAAGTTGGACACGGAGGGACATTGGACAGTGCAGCACAAGGCGTTCTGGgtgagcagataagcttaatgaccctccccttaaataccagaaatgctagc #### Trub1_ID12383_3 --> 2 - 0 Original Alignment tgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagtaGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc Alignment from CESAR tgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagtaGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc Alignment from Spaln_aa2Genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagTAGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc Alignment from Spaln_nt2Genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagTAGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc Alignment from Pairagon TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagTAGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc Alignment from Exonerate_protein2genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagTAGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc Alignment from Exonerate_coding2genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagTAGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc Alignment from GeneWise TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG atacaccttgttttctgtatgcattgtgtctgggtcacgtgtccttccagTAGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtaacatagtgataatgtatgtctttcttcacttgttgtccttttgcagc #### Tut1_ID2553_6 --> 1 - 1 Original Alignment gTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAg agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagaTTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTggtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa Alignment from CESAR gTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAg agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagaTTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTggtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa Alignment from Spaln_aa2Genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagATTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa Alignment from Spaln_nt2Genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagATTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa Alignment from Pairagon GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagATTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa Alignment from Exonerate_protein2genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagATTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa Alignment from Exonerate_coding2genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagATTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa Alignment from GeneWise GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agtagagcttgtggaaattctctaacaattgttttctcttttgcaaccagATTAGCATTATATAATTCACGTTTCCTGAATCTGTGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtgagcgcagggacagacctggtccatgtatgtgtcaggcaaggcaggaa #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacaggGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTtggtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacaggGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTtggtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from GeneWise GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg #### Uhrf2_ID6381_11 --> 1 - 0 Original Alignment gGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcaggGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat Alignment from CESAR gGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcaggGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat Alignment from Spaln_aa2Genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcagGGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat Alignment from Spaln_nt2Genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcagGGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat Alignment from Pairagon GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcagGGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat Alignment from Exonerate_protein2genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcagGGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat Alignment from Exonerate_coding2genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcagGGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat Alignment from GeneWise GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG tcctttaaattggtataaggtcttcattcagtgacatgagtgtcttgcagGGCATTGGCCCTAAACTGTGATGCTCCATTGGACGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGCATTTATAAGgtacggaatctggcatatttatggttattatgggcctctatcgttattat #### Unc93b1_ID213_4 --> 1 - 2 Original Alignment gTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCag caaaaacaaaagtccctccctagaccacccctttgactcttccccctcaggTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCaggtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg Alignment from CESAR gTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCag caaaaacaaaagtccctccctagaccacccctttgactcttccccctcaggTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCaggtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg Alignment from Spaln_aa2Genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG caaaaacaaaagtccctccctagaccacccctttgactcttccccctcagGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCAGgtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg Alignment from Spaln_nt2Genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG caaaaacaaaagtccctccctagaccacccctttgactcttccccctcagGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCAGgtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg Alignment from Pairagon GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG caaaaacaaaagtccctccctagaccacccctttgactcttccccctcagGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCAGgtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg Alignment from Exonerate_protein2genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG caaaaacaaaagtccctccctagaccacccctttgactcttccccctcagGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCAGgtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg Alignment from Exonerate_coding2genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG caaaaacaaaagtccctccctagaccacccctttgactcttccccctcagGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCAGgtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg Alignment from GeneWise GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG caaaaacaaaagtccctccctagaccacccctttgactcttccccctcagGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTAGGCATCTATGCCCTCTTTGTTTCTACCAACTACTGGGAACGCTACTACACACTTGTGCCTTCTGCTGTGGCCCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATTACCAGgtgagcatgtcaactgagacctatatggcttccatggcttggtggaagtg #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACATGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat #### Unc93b1_ID218_9 --> 0 - 1 Original Alignment GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCa catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACA---GTGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCTG---CACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCagtaagaagaaacttaacaactcacacacatgagccggttttctagcccac Alignment from CESAR GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCa catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACA---GTGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCTG---CACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCagtaagaagaaacttaacaactcacacacatgagccggttttctagcccac Alignment from Spaln_aa2Genome GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCA catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACA---GTGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCTG---CACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCAgtaagaagaaacttaacaactcacacacatgagccggttttctagcccac Alignment from Spaln_nt2Genome GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCA catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACAG---TGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCT---GCACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCAgtaagaagaaacttaacaactcacacacatgagccggttttctagcccac Alignment from Pairagon GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCA catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACAG---TGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCT---GCACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCAgtaagaagaaacttaacaactcacacacatgagccggttttctagcccac Alignment from Exonerate_protein2genome GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCA catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACA---GTGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCTG---CACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCAgtaagaagaaacttaacaactcacacacatgagccggttttctagcccac Alignment from Exonerate_coding2genome GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCA catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACA---GTGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCTG---CACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCAgtaagaagaaacttaacaactcacacacatgagccggttttctagcccac Alignment from GeneWise GGCTACGGCGTGTGCTCCATGGGGCTGGAGCGACTGGCATACCTGCTCATAGCTTACAGCCTGGGTGCCTCAGCCTCCTCGGTTCTGGGGCTGCTGGGACTGTGGCTGCCTCGCTCTGTCCCGCTCGTGGCTGGGGCAGGACTGCACCTACTGCTCACCCTTAGCCTCTTTTTCTGGGCTCCTGCTCCTCGGGTCCTCCAGCACAGTTGGATCTTTTACTTCGTGGCTGCCCTCTGGGGTGTGGGCAGCGCCCTCAACAAGACCGGACTTAGCA catgcataagggcttgggaccaacctgctaccctgtgctcttttctctagGGCTATGGTGTGTGCTCCACA---GTGGAGCGACTGGCATACCTTCTCATAGCTTACAGCTTGGGGGCCTCAGCCTCCTCAGTTCTGGGGTTGCTGGGACTATGGCTTCCCCGCTCAGTCCCACTTGTGGCAGGGGCAGGACTGCACCTCCTACTTTCCCTTAGCCTCTCTTTCTGGGCTCCTGCCCCTCGGGTTCTG---CACAGTTGGATCTTTTACTTTGTGGCTGCCCTCTGGGATGTGGGTAGTGCCCTCAACAAGACTGGACTTAGCAgtaagaagaaacttaacaactcacacacatgagccggttttctagcccac #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCaggtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCaggtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGC-- ggacctgctacccagcacttatcattttgagccctctttgctgtcctcagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtatgtgccatcttcagttcacaaggtctagcacggggtggggctgcttg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaagaaagcagagatggacaggtttcaattttgttttgtttttattacagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATATAGTCAAACAACTAGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGGGCAACATCAAGTCCGAATGCAAgtgagtgatcaagtatgaatgcaagtactaggaactatggatctggtgta #### Vldlr_ID5813_12 --> 1 - 1 Original Alignment cTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCg gatcattctttaagctcttgttctaggtgctggcatttgtttctgtacagtTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAGG---------GTGACAGAGGACATTAAATGGCCTAATGGAATTACA---ggtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt Alignment from CESAR cTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCg gatcattctttaagctcttgttctaggtgctggcatttgtttctgtacagtTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAGG---------GTGACAGAGGACATTAAATGGCCTAATGGAATTACA---ggtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt Alignment from Spaln_aa2Genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACA- gatcattctttaagctcttgttctaggtgctggcatttgtttctgtacagTTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAGG---------GTGACAGAGGACATTAAATGGCCTAATGGAATTACAGgtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt Alignment from Spaln_nt2Genome CTGCCTCCATAGCTGTGGATCCGTTGTCGGGCTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG ctttaagctcttgttctagGTGC-----TGGCATTTGTTTC--TGTACAGTTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAG---------GGTGACAGAGGACATTAAATGGCCTAATGGAATTACA---Ggtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt Alignment from Pairagon CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG gatcattctttaagctcttgttctaggtgctggcatttgtttctgtacagTTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAG---------GGTGACAGAGGACATTAAATGGCCTAATGGAATTACA---Ggtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt Alignment from Exonerate_protein2genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG gatcattctttaagctcttgttctaggtgctggcatttgtttctgtacagTTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAGG---------GTGACAGAGGACATTAAATGGCCTAATGGAATTACA---Ggtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt Alignment from Exonerate_coding2genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG gatcattctttaagctcttgttctaggtgctggcatttgtttctgtacagTTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAGG---------GTGACAGAGGACATTAAATGGCCTAATGGAATTACA---Ggtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt Alignment from GeneWise CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACAC gatcattctttaagctcttgttctaggtgctggcatttgtttctgtacagTTTTGTTTTCTGGTCAGACTGGGGCGAGCCAGCCAGAATAGAAAAAGCAGGGATGAATGGATTTGATAGG---------GTGACAGAGGACATTAAATGGCCTAATGGAATTACAGgtaagtatgtcattccttgttaccaattagttaagtgcctttacaatttt #### Vldlr_ID5817_16 --> 2 - 1 Original Alignment gtACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAg tccacaatgtgcactttagtctaagatattgcccctgtctctctccctaggtACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAggtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct Alignment from CESAR gtACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAg tccacaatgtgcactttagtctaagatattgcccctgtctctctccctaggtACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAggtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct Alignment from Spaln_aa2Genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG tccacaatgtgcactttagtctaagatattgcccctgtctctctccctagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAGgtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct Alignment from Spaln_nt2Genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG tccacaatgtgcactttagtctaagatattgcccctgtctctctccctagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAGgtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct Alignment from Pairagon GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG tccacaatgtgcactttagtctaagatattgcccctgtctctctccctagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAGgtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct Alignment from Exonerate_protein2genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG tccacaatgtgcactttagtctaagatattgcccctgtctctctccctagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAGgtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct Alignment from Exonerate_coding2genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG tccacaatgtgcactttagtctaagatattgcccctgtctctctccctagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAGgtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct Alignment from GeneWise GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG tccacaatgtgcactttagtctaagatattgcccctgtctctctccctagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGATATCAACACAGCAGACATTCTACAAACTAGTGGACTGGTCCCTGGAGgtaatgggttgaaaactgcagtgtgtatctaagccacaagtaattatgct #### Vps13a_ID4052_71 --> 0 - 0 Original Alignment GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact Alignment from CESAR GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact Alignment from Spaln_aa2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact Alignment from Spaln_nt2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact Alignment from Pairagon GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact Alignment from Exonerate_protein2genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact Alignment from Exonerate_coding2genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact Alignment from GeneWise GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG gtacaatttttaaacacacaagtatacatgttctctcttcttttgctcagGAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGGgtgaggataggtcatcttttatataaggtacatcagagaaacatctcact #### Vps13a_ID4054_69 --> 0 - 2 Original Alignment GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGAcg tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGcggtaagttatctctcttttctgctatggttgatacgactaacagatgctgg Alignment from CESAR GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGAcg tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGcggtaagttatctctcttttctgctatggttgatacgactaacagatgctgg Alignment from Spaln_aa2Genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGCGgtaagttatctctcttttctgctatggttgatacgactaacagatgctgg Alignment from Spaln_nt2Genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGCGgtaagttatctctcttttctgctatggttgatacgactaacagatgctgg Alignment from Pairagon GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGCGgtaagttatctctcttttctgctatggttgatacgactaacagatgctgg Alignment from Exonerate_protein2genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGCGgtaagttatctctcttttctgctatggttgatacgactaacagatgctgg Alignment from Exonerate_coding2genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGCGgtaagttatctctcttttctgctatggttgatacgactaacagatgctgg Alignment from GeneWise GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG tttttgcaaaccagaaggcagaataatatgctattattttcctctattagGTCATGGAAAATGGGAGATTTGCAAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTCATGGTAACAAGGCGgtaagttatctctcttttctgctatggttgatacgactaacagatgctgg #### Vps13a_ID4057_66 --> 0 - 1 Original Alignment GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAg cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAggtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg Alignment from CESAR GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAg cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAggtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg Alignment from Spaln_aa2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAGgtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg Alignment from Spaln_nt2Genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAGgtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg Alignment from Pairagon GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAGgtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg Alignment from Exonerate_protein2genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAGgtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg Alignment from Exonerate_coding2genome GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAGgtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg Alignment from GeneWise GGTTTTGTAAGTGGCATTACAGGGATTGTTACAAAGCCAATTAAAG cttaacagaattatataataatataactaagtgttttctgtgtcctacagGGTTTTGTAAGTGGTATTACGGGCATTGTTTCAAAGCCAATTAAAGgtaagcgtcaccttggctgttacatatttcacaagtgtcattctcatttg #### Vps13a_ID4069_54 --> 0 - 2 Original Alignment GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAag agttctgtgcagaataggaactgcaactctcacatcttcatttgacctagGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAaggtgagagccatatagactcaaaaactgacactccgattaggtcccccaag Alignment from CESAR GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAag agttctgtgcagaataggaactgcaactctcacatcttcatttgacctagGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAaggtgagagccatatagactcaaaaactgacactccgattaggtcccccaag Alignment from Spaln_aa2Genome GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG agttctgtgcagaataggaactgcaactctcacatcttcatttgacctagGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgagagccatatagactcaaaaactgacactccgattaggtcccccaag Alignment from Spaln_nt2Genome GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG agttctgtgcagaataggaactgcaactctcacatcttcatttgacctagGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgagagccatatagactcaaaaactgacactccgattaggtcccccaag Alignment from Pairagon GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG agttctgtgcagaataggaactgcaactctcacatcttcatttgacctagGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgagagccatatagactcaaaaactgacactccgattaggtcccccaag Alignment from Exonerate_protein2genome GTAACCCATAAGGATGATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG agttctgtgcagaataggaactgcaactctcacatCTTCATTTGACCTAGGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgagagccatatagactcaaaaactgacactccgattaggtcccccaag Alignment from Exonerate_coding2genome GTAACCCATAAGGATGATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG agttctgtgcagaataggaactgcaactctcacatCTTCATTTGACCTAGGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgagagccatatagactcaaaaactgacactccgattaggtcccccaag Alignment from GeneWise GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG agttctgtgcagaataggaactgcaactctcacatcttcatttgacctagGATATGATGACACCGATAAGTCTGGGGAAAGAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGCATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAACTGGAAGTTGTGCTGGCATTACAGGACGTCGGGATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgagagccatatagactcaaaaactgacactccgattaggtcccccaag #### Vps13a_ID4073_50 --> 0 - 0 Original Alignment GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg Alignment from CESAR GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg Alignment from Spaln_aa2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg Alignment from Spaln_nt2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg Alignment from Pairagon GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg Alignment from Exonerate_protein2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg Alignment from Exonerate_coding2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg Alignment from GeneWise GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG aggtactttaagcctactaggtactttacacaggtctccttctcttgtagGTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGgtaagcaaatgaactttatacaatgcatgatctactccagtgcacgatgg #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from CESAR GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Pairagon GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from GeneWise GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca #### Vps13a_ID4078_45 --> 2 - 0 Original Alignment cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagcaCCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga Alignment from CESAR cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagcaCCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga Alignment from Spaln_aa2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagCACCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga Alignment from Spaln_nt2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagCACCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga Alignment from Pairagon CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagCACCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga Alignment from Exonerate_protein2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagCACCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga Alignment from Exonerate_coding2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagCACCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga Alignment from GeneWise CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG aattactatgttacacactaccactagccaacgtttttgtttccttacagCACCTGCTAACCATTCTGTCGCTGATAAGATTCCCTTAACAAAAGTGGGACGCCGTCTGTACACTGTGAGACACAGAGAATCTGGGGTTGAAAGATCTATCATTTGTCAAATTGATACAGTCGAGGGAAGTAAAAAGGTAACAATCCACTCACCAGTGCAGgtaagaagtataaaaagccactttgagggcatctgtttgcatttgtcaga #### Vps13a_ID4082_41 --> 0 - 0 Original Alignment GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt Alignment from CESAR GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt Alignment from Spaln_aa2Genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt Alignment from Spaln_nt2Genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt Alignment from Pairagon GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt Alignment from Exonerate_protein2genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt Alignment from Exonerate_coding2genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt Alignment from GeneWise GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA caagttgaggaactagtttatccaacttatggttagtttttcttttttagGTTTCACCAGTTATCATAAATACCATGATAACTATTACTTCAGCACTTTACACAACTAAGGAATCTGTTCCAGAGGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAGAACCTAAAAATGTGGTTTCTTGAGGAATCAAATGAAAGTGAAAAAGTAGTTCCCACAAATGAAGTGATGCCAGGTGGGGAGACCCTAAACTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACAGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAAAGTAAAAACTGGCTATCTCTAATCAATCTCCATTGTCACGTTGAATTAGAGgtatccctgtcttcaatgtttgtaatgctaatagaatgatggaatgtttt #### Vps13a_ID4087_36 --> 2 - 0 Original Alignment ctACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagctACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa Alignment from CESAR ctACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagctACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa Alignment from Spaln_aa2Genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagCTACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa Alignment from Spaln_nt2Genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagCTACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa Alignment from Pairagon CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagCTACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa Alignment from Exonerate_protein2genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagCTACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa Alignment from Exonerate_coding2genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagCTACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa Alignment from GeneWise CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ggtcacctgattgtaggactgggtcttctgtccctgctcattatatttagCTACTGTAGTGACTGCTGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCAGGACCGGATGAGgtatccgtagcctgaaatcatgtctgcatgtgttaagagattagctaaaa #### Vps13a_ID4091_32 --> 0 - 0 Original Alignment GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga Alignment from CESAR GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga Alignment from Spaln_aa2Genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga Alignment from Spaln_nt2Genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga Alignment from Pairagon GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga Alignment from Exonerate_protein2genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga Alignment from Exonerate_coding2genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga Alignment from GeneWise GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG tagattattgtctcagtctccaacctcaagccttttcttcactcctacagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGAGGCAACTGCTGGCTATGCATACACAGACATGAGTGTTGTTGACATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAAGTTTCTGTATTCTATATTAgtgggtttcttgaaaatagcttttctagaaagacattgctatgtttctga #### Vps13a_ID4092_31 --> 2 - 0 Original Alignment ggCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagggCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt Alignment from CESAR ggCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagggCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt Alignment from Spaln_aa2Genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagGGCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt Alignment from Spaln_nt2Genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagGGCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt Alignment from Pairagon GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagGGCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt Alignment from Exonerate_protein2genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagGGCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt Alignment from Exonerate_coding2genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagGGCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt Alignment from GeneWise GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttgactaaatgtaaaaggcagtatagtctctttgccctccatctctccagGGCTTGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAGATGGCTATCTACAAAAAAgtgcatatttacctctactaagtgctaatacatcattaatatgcagcatt #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgtttatttattatgttactctttagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAggtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgtttatttattatgttactctttagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAggtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca #### Vps13a_ID4095_28 --> 0 - 0 Original Alignment GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct Alignment from CESAR GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct Alignment from Spaln_aa2Genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct Alignment from Spaln_nt2Genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct Alignment from Pairagon GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct Alignment from Exonerate_protein2genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct Alignment from Exonerate_coding2genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct Alignment from GeneWise GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG aggcctacattacatccatgtcataacttgcccacattcactctctacagGTGGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTCTTACAACTTATTAAGgtatcccaatataattcaaagtagatactgtattcttgtgcctatcacct #### Vps13a_ID4097_26 --> 0 - 1 Original Alignment GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAg tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAggtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta Alignment from CESAR GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAg tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAggtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta Alignment from Spaln_aa2Genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAGgtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta Alignment from Spaln_nt2Genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAGgtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta Alignment from Pairagon GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAGgtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta Alignment from Exonerate_protein2genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAGgtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta Alignment from Exonerate_coding2genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAGgtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta Alignment from GeneWise GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tacagattctcatcagatatgggattgtttattattgattattgctgtagGTGTCCATACGATTTTATCACCTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAGGCTGAGTTTAGAACATTTGACTTAAAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTAGgtgaggccgttaaaacatgtacatgatttctacaacttgattaacttcta #### Vps13a_ID4099_24 --> 0 - 1 Original Alignment ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACggtaagcataaactgattaacagaacctttttcgttaaataggtctgacca Alignment from CESAR ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACggtaagcataaactgattaacagaacctttttcgttaaataggtctgacca Alignment from Spaln_aa2Genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACGgtaagcataaactgattaacagaacctttttcgttaaataggtctgacca Alignment from Spaln_nt2Genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACGgtaagcataaactgattaacagaacctttttcgttaaataggtctgacca Alignment from Pairagon ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACGgtaagcataaactgattaacagaacctttttcgttaaataggtctgacca Alignment from Exonerate_protein2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACGgtaagcataaactgattaacagaacctttttcgttaaataggtctgacca Alignment from Exonerate_coding2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACGgtaagcataaactgattaacagaacctttttcgttaaataggtctgacca Alignment from GeneWise ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgaataagtggtcagccttctagttgtcattttccctcttgttttacagATTCAAGCATCTACTTTACCAGTGTCACACATTTCTCAGAAATTAATACCTTCATTGGAACAGCCTGTTACGGAAGACGgtaagcataaactgattaacagaacctttttcgttaaataggtctgacca #### Vps13a_ID4103_20 --> 2 - 0 Original Alignment gtTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcaggtTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct Alignment from CESAR gtTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcaggtTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct Alignment from Spaln_aa2Genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcagGTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct Alignment from Spaln_nt2Genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcagGTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct Alignment from Pairagon GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcagGTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct Alignment from Exonerate_protein2genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcagGTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct Alignment from Exonerate_coding2genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcagGTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct Alignment from GeneWise GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG aggtttttattgcatggtttaactcatttttcttccccaacccccttcagGTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGGATTAATGTAAAGGCTTCATACGTTATTGTACCACAATATGGAAATTTTAGCCCTACATCAAATCTACTTCTCCTAGATCTTGGTCATTTGAAGgtgagcgtttatgaaggttattgatgatatgccatatgtggtacctctct #### Vps13a_ID4104_19 --> 0 - 1 Original Alignment AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAg tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAAT---TTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAggtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc Alignment from CESAR AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAg tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAAT---TTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAggtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc Alignment from Spaln_aa2Genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAAT---TTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAGgtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc Alignment from Spaln_nt2Genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAA---TTTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAGgtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc Alignment from Pairagon AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAA---TTTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAGgtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc Alignment from Exonerate_protein2genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAAT---TTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAGgtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc Alignment from Exonerate_coding2genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAAT---TTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAGgtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc Alignment from GeneWise AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG tgtttttgtgtacttagttgtgcttcatccccttttctctctttcaacagAGGACAGTCAAT---TTAGTGGAATTCTTCAGACCTCCAAAAGATGTCCATATTGCCCAACTTACTTCTGTAACTTTGACAACACTCGAAGAATTTCGTGCGAAAACAGCGACAGgtaagatcccaattgactaaagtatttgcagtttactataaatgcatttc #### Vps13a_ID4107_16 --> 2 - 0 Original Alignment ttCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagttCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg Alignment from CESAR ttCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagttCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg Alignment from Spaln_aa2Genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagTTCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg Alignment from Spaln_nt2Genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagTTCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg Alignment from Pairagon TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagTTCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg Alignment from Exonerate_protein2genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagTTCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg Alignment from Exonerate_coding2genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagTTCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg Alignment from GeneWise TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA ttacattgtcatcagtagttagaacatagtgtgtgcttcctgctccccagTTCTGGAAGAAATGTTGACACCTGAGGAAAAGTCATTACTCTATGAAGCAATTGGTTATAGTGAAACAGCAGCTGATCCAACCTTGCCAAAAACAgtaagttagttctctcatgttataatttttaaacttataaattattattg #### Vps13a_ID4108_15 --> 0 - 1 Original Alignment GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAa tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAagtgagttcagtttccatcttatagctattcaagcattcacatagagtttt Alignment from CESAR GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAa tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAagtgagttcagtttccatcttatagctattcaagcattcacatagagtttt Alignment from Spaln_aa2Genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAAgtgagttcagtttccatcttatagctattcaagcattcacatagagtttt Alignment from Spaln_nt2Genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAAgtgagttcagtttccatcttatagctattcaagcattcacatagagtttt Alignment from Pairagon GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAAgtgagttcagtttccatcttatagctattcaagcattcacatagagtttt Alignment from Exonerate_protein2genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAAgtgagttcagtttccatcttatagctattcaagcattcacatagagtttt Alignment from Exonerate_coding2genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAAgtgagttcagtttccatcttatagctattcaagcattcacatagagtttt Alignment from GeneWise GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tgctaaggtcagggtgtctttttttctactggattatgtttttttcttagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAAAGATCCAGAAGATAACGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCTAATGCCAACCAACAACAAGATGTGAAGCCTGGAAgtgagttcagtttccatcttatagctattcaagcattcacatagagtttt #### Vps13a_ID4121_2 --> 2 - 0 Original Alignment gaGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacaggaGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta Alignment from CESAR gaGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacaggaGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta Alignment from Spaln_aa2Genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacagGAGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta Alignment from Spaln_nt2Genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacagGAGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta Alignment from Pairagon GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacagGAGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta Alignment from Exonerate_protein2genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacagGAGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta Alignment from Exonerate_coding2genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacagGAGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta Alignment from GeneWise GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG tatacatatttaacacggtgtcatatccaccaagcatctttccctcacagGAGCTGTGGCCCTCAAGAACCTCGTAATTAAAGAAAATGCATTGgtaaggtttgcttgcgaaagtttatgatttttgtgcactcattattttta #### Vti1a_ID11656_4 --> 0 - 0 Original Alignment AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca Alignment from CESAR AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca Alignment from Spaln_aa2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca Alignment from Spaln_nt2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca Alignment from Pairagon AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca Alignment from Exonerate_protein2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca Alignment from Exonerate_coding2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca Alignment from GeneWise AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG cttatcttttaaatgatcgtcttggttaggatgtaatgtgacatctttagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtatcttctaagtgaggaaggcaagtgggtgcctgcaggatggtacagca #### Vwa2_ID12237_10 --> 2 - 1 Original Alignment ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagctCCAAAG---AGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAggtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac Alignment from CESAR ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagctCCAAAG---AGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAggtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac Alignment from Spaln_aa2Genome GCCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCA catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagCTCCAAAG---AGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAGgtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac Alignment from Spaln_nt2Genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagCTCCAAA---GAGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCCA---CCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAGgtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac Alignment from Pairagon CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagCTCCAAA---GAGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCCA---CCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAGgtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac Alignment from Exonerate_protein2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagCTCCAAAG---AGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAGgtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac Alignment from Exonerate_coding2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagCTCCAAAG---AGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAGgtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac Alignment from GeneWise CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgccactgcagccctaggtaacagtggtttgtgttttatccttgctagCTCCAAAG---AGCTTGGAATGCAGAATTGATGTCCTATTCCTGCTGGACAGTTCTGCAGGTACTACACTGGGGGGCTTCAGGAGAGCC---ACCTTTGTCAAGCGCTTTGTGCAGGCGGTGCTGAGGGAGGACTCCCAAGCCCGCGTTGGGATAGCTAGCTATGGTAGGAATCTGATGGTGGCAGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCCTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACAGGCCGCGCCGAGTAGTAGTCCTTCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCGGCAGCTCATGCAAGGGCTCGGGAGCTACTACTCCTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTGGTGAAGATCACTGGTAGCCCAAAGCATGTGATGGTTCACACAGACCCTCAGGACCTGTTCAGCCAGATTCCAGAGCTGCAAAGGAGGCGTTGCAGCCAGCCACGGCCAGgtaagactgctgctgaacctggcacaatctcgttaagtagacagatccac #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagccCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagccCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Spaln_aa2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Spaln_nt2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Pairagon CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from GeneWise CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga #### Vwce_ID2949_4 --> 2 - 1 Original Alignment aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagaaGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAggtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc Alignment from CESAR aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagaaGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAggtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc Alignment from Spaln_aa2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc Alignment from Spaln_nt2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc Alignment from Pairagon AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc Alignment from Exonerate_protein2genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc Alignment from Exonerate_coding2genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc Alignment from GeneWise AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgcggtacagctgttttgacatgtgtgatttctcctcttgttttagAAGCCCATGGGTCCTGCGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACAGCTGTTGGTATTCGTTGTGCAGgtaagcagtctggcagtgggggaaggtggaaggtggaatcgcatcttttc #### Vwce_ID2950_5 --> 2 - 1 Original Alignment acATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAg gaattatggctacggttagaatgaggcatgacactgttggcctctttcagacATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAggtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc Alignment from CESAR acATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAg gaattatggctacggttagaatgaggcatgacactgttggcctctttcagacATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAggtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc Alignment from Spaln_aa2Genome ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG gaattatggctacggttagaatgaggcatgacactgttggcctctttcagACATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAGgtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc Alignment from Spaln_nt2Genome ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG gaattatggctacggttagaatgaggcatgacactgttggcctctttcagACATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAGgtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc Alignment from Pairagon ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG gaattatggctacggttagaatgaggcatgacactgttggcctctttcagACATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAGgtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc Alignment from Exonerate_protein2genome ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG gaattatggctacggttagaatgaggcatgacactgttggcctctttcagACATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAGgtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc Alignment from Exonerate_coding2genome ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG gaattatggctacggttagaatgaggcatgacactgttggcctctttcagACATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAGgtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc Alignment from GeneWise ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG gaattatggctacggttagaatgaggcatgacactgttggcctctttcagACATTGAGGAATGTTTAAGCTCATCTTGTGAGGGCCATTGTGTGAACACAGAGGGGGGTTTTGTGTGTGAGTGTGGACCAGCCATGCAACTCTCCACTGATCGTCACAGCTGCCAAGgtatgtgggtaggctgtgtgtggtggttcctttgccctgccaggtaaccc #### Vwce_ID2953_8 --> 2 - 0 Original Alignment ctTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagctTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct Alignment from CESAR ctTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagctTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct Alignment from Spaln_aa2Genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagCTTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct Alignment from Spaln_nt2Genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagCTTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct Alignment from Pairagon CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagCTTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct Alignment from Exonerate_protein2genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagCTTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct Alignment from Exonerate_coding2genome CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagCTTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct Alignment from GeneWise CTTTCCCGAAGGCCGTTCTGGCCCCATCTGCCATCCTGCAGCCCCGACAGCATCCTGCTAAGATGTCCCTGCTCCTCCCTGAGGCAGGCCGGCCTGCCCTGTCCCCAGGACACAGCCCTCCTCCAGGGGCCCCAGGATACCCCACTGGAGTTAGAACAATCAGTCAGCCATCTACCACCCAGGTCCTACCCACATTCTTTCCCACACAGTTGATATCCACTCCAGTGCCAAGTTCCTCCCCACTGGGGACCCTTGGACCCCCCTCACTCCTCCAGGGGGCTGTAGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAAAGCTGGGAGCAGGGTCCTCTTCCTGTTGGCACCTGGGAGCCACGTATGAATCAGGCAGCCGCTGGAACCAGCCCGGATGTTCTCAGTGCTTGTGCCAG aaagtctacttccttccactgctaccttcacacgctgttccacctcttagCTTTCCCTAAAGCTGTTCTGGCCCCATCAGCCATCCTACAGCCCCGACAGCATCCTGCCAAGATGTCCTTGCTCCTCCCTGAGGCAGGCCAGCCCGCCCTGTCCCCAGGACACAGCCCTCCCCCAGGGGCCCCAGGATACCCTACCGGAGTTGGAACAATTAGCCAGCCATCTAACACCCCTGTCCTACCCGCATTCTTTCCCACACAGTTGATCTCCACCCCAGTGCCAAGTTCATCTCCACTGGGGACCCTTGGACCCCCTTCACTCCTCCAGGGAACTGTTGGGACCCCTTCCTCACCTAGGGGTCCTGAAAGCCCAGAGCTGGGAGCAGGGTCCTCCTCCTGTTGGCATCTGGGAGCTACATATGAATCAGGAAGCCGCTGGAACCAGCCTGGATGTTCTCAGTGCTTGTGCCAGgtaagtgtgaagaccccatcctgccttggagaaatttttacattctgcct #### Vwce_ID2957_12 --> 2 - 0 Original Alignment ggAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagggAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag Alignment from CESAR ggAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagggAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag Alignment from Spaln_aa2Genome GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagGGAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag Alignment from Spaln_nt2Genome GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagGGAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag Alignment from Pairagon GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagGGAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag Alignment from Exonerate_protein2genome GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagGGAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag Alignment from Exonerate_coding2genome GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagGGAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag Alignment from GeneWise GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG tagcggctctacctgaaaagcccttacctttgttttttcttccctgctagGGAGATGGTATTTCCATGGCTGTTGGTACACAGATGGGGCTGTGTTCAGTGGGGGTGGTGATGACTGTGGCACCTGCGTTTGCCAGgtaagctgtgagtcacctgttggcccaactgaagatttgaaaagagtcag #### Vwce_ID2959_14 --> 2 - 0 Original Alignment gcTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcaggcTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc Alignment from CESAR gcTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcaggcTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc Alignment from Spaln_aa2Genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcagGCTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc Alignment from Spaln_nt2Genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcagGCTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc Alignment from Pairagon GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcagGCTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc Alignment from Exonerate_protein2genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcagGCTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc Alignment from Exonerate_coding2genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcagGCTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc Alignment from GeneWise GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG acatagccatattcaaagaattacaacactagtgattgcttctcttgcagGCTGCTCTCTGGATGACAATGGGGTGGAGTTTCCGATCGGACCAATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTCTGCCAAgtgagggatccctacctgaacatcttgctactactctgggctgtcatgtc #### Vwce_ID2965_19 --> 0 - 1 Original Alignment CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAg aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAggtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat Alignment from CESAR CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAg aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAggtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat Alignment from Spaln_aa2Genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAGgtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat Alignment from Spaln_nt2Genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAGgtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat Alignment from Pairagon CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAGgtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat Alignment from Exonerate_protein2genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAGgtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat Alignment from Exonerate_coding2genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAGgtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat Alignment from GeneWise CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG aagatcccctggattccttcataggtacaatgtaactctttctcttccagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTACAATCTGTACTGATCCCTCCTGCCCAGgtgagaaagccatccccttttaggtcacagtggcttgctagttgagaaat #### Wdr74_ID2316_6 --> 0 - 0 Original Alignment GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca Alignment from CESAR GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca Alignment from Spaln_aa2Genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca Alignment from Spaln_nt2Genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca Alignment from Pairagon GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca Alignment from Exonerate_protein2genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca Alignment from Exonerate_coding2genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca Alignment from GeneWise GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atggaggattagaggggacaagttaggctcaaatcctgttcccccaacagGTGCGGAATGATTGGCTTGATCTCCGTGTTCCTATTTGGGACCAAGATACACAGTTTCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAGgtgactctgtatttactcctagatggaaaaagcttggatttggatataca #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gtatctagaacagggactatatacacttcaaacttctattttttatttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAGGCCGGGATAACTGGGAGgtaagtgaataattaagtgtgagggatttcgagacagagctgggatgaat #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac #### Wdr96_ID10349_22 --> 0 - 0 Original Alignment TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc Alignment from CESAR TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc Alignment from Spaln_aa2Genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc Alignment from Spaln_nt2Genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc Alignment from Pairagon TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc Alignment from Exonerate_protein2genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc Alignment from Exonerate_coding2genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc Alignment from GeneWise TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAG tggttgctgacaagtgcagagggctgacatgtctttctttcctgtcttagTGTTTTCATATACCTTATGTGGTTGACAACCTTCCCATGAAAGAGCGAACGGAAGAGGAGCTGCAGGAGTTGAGTAAGGTCATGCAGCAAAAGAAAACTGAGATTGAGTGTCTTAAGgtgagtgcactttgaacacatgtgtttgtgtgtaaggtgtgagagagagc #### Wdr96_ID10356_15 --> 0 - 0 Original Alignment GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg Alignment from CESAR GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg Alignment from Spaln_aa2Genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg Alignment from Spaln_nt2Genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg Alignment from Pairagon GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg Alignment from Exonerate_protein2genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg Alignment from Exonerate_coding2genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg Alignment from GeneWise GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ctgctggcctgatcccttttaactgtgtaaatcaagtgttttgtttttagGAACACACTGGTGTCCTTGTACTTAAGTCACACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTGTCTTCTCATGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtaaagctaccaaatgtttgaatttctgaggaaataacaaggggtggggg #### Wdr96_ID10359_12 --> 1 - 1 Original Alignment gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacaggTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAggtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa Alignment from CESAR gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacaggTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAggtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa Alignment from Spaln_aa2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAGgtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa Alignment from Spaln_nt2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAGgtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa Alignment from Pairagon GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAGgtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa Alignment from Exonerate_protein2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAGgtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa Alignment from Exonerate_coding2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAGgtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa Alignment from GeneWise GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG aagctgataaaatggagaataacagtcaatggcctgtgcttgtcccacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTCATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGATTCACAGgtacactgcaggaggtctgtgagtataaaactgaaatcagttcatgctaa #### Wdr96_ID10364_7 --> 2 - 0 Original Alignment atGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagacGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa Alignment from CESAR atGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagacGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa Alignment from Spaln_aa2Genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagACGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa Alignment from Spaln_nt2Genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagACGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa Alignment from Pairagon ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagACGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa Alignment from Exonerate_protein2genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagACGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa Alignment from Exonerate_coding2genome ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagACGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa Alignment from GeneWise ATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT cagcatgagtaatctggtgcagcttgccaactctcctctcctctgcgcagACGGAGCCCAACTCATCAACCCACTCACACTAGTATACCAAAAGGACAGCATACTTGCATCTGGAGTTgtaagttattctccttctcagaacccctcacttcatcacaaaaaagaaaa #### Wdr96_ID10365_6 --> 0 - 1 Original Alignment CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAggtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt Alignment from CESAR CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAggtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt Alignment from Spaln_aa2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAGgtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt Alignment from Spaln_nt2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAGgtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt Alignment from Pairagon CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAGgtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt Alignment from Exonerate_protein2genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAGgtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt Alignment from Exonerate_coding2genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAGgtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt Alignment from GeneWise CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG tgatttctcagcaacagttctcttgcagagaccaaggtcacatcgcgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACCTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTCCAGAAGGCAGAGGAGTTTCCACTTCCAGgtaggacagtgctctccctacaacccaagcacaggtaatcaggtgagcgt #### Xpnpep1_ID11137_18 --> 0 - 0 Original Alignment TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt Alignment from CESAR TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt Alignment from Spaln_aa2Genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt Alignment from Spaln_nt2Genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt Alignment from Pairagon TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt Alignment from Exonerate_protein2genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt Alignment from Exonerate_coding2genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt Alignment from GeneWise TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctgctgtgaggtggggattgtaacctgctaatggatggttttgaccttagTATAATTTCAACAATCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTACCCATTCAGACTAAAATGATAGATGTGAATGCCCTTACTGGTAAGGAGgttggtgtgaatctgtggtgaacgtctggaagaaattcttatgggctctt #### Xpnpep1_ID11147_9 --> 0 - 0 Original Alignment GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct Alignment from CESAR GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct Alignment from Spaln_aa2Genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct Alignment from Spaln_nt2Genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct Alignment from Pairagon GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct Alignment from Exonerate_protein2genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct Alignment from Exonerate_coding2genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct Alignment from GeneWise GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC tgggtggccactgaccagcctgttgactcttaaattcttatatattgcagGATCATCGCTGCTGTATGCCTTATGCACCCATTTGCATTGCAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGCATGAGGCGGGCTCATgtaagcagagtggctggagtgggcgacatggtgagagtaggaatgaccct #### Xpnpep1_ID11149_7 --> 2 - 2 Original Alignment ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagggCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCatgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat Alignment from CESAR ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagggCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCatgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat Alignment from Spaln_aa2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagGGCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCATgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat Alignment from Spaln_nt2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagGGCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCATgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat Alignment from Pairagon GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagGGCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCATgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat Alignment from Exonerate_protein2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagGGCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCATgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat Alignment from Exonerate_coding2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagGGCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCATgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat Alignment from GeneWise GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT gagtcaggcagccaacagaaactagttttctgagcattcttctcctacagGGCTGTTCAACCTCCGTGGGTCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATCGTAGGCCTGGAGACAATCATgtaagtgttcactctcatccagggtacccttctcctcacctcacaattat #### Xpnpep1_ID11150_6 --> 2 - 1 Original Alignment gcATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAt acttccaggctcagaagcattgtagtgctccttttcctttctcttctcaggcATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCtgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt Alignment from CESAR gcATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAt acttccaggctcagaagcattgtagtgctccttttcctttctcttctcaggcATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCtgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt Alignment from Spaln_aa2Genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccaggctcagaagcattgtagtgctccttttcctttctcttctcagGCATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt Alignment from Spaln_nt2Genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccaggctcagaagcattgtagtgctccttttcctttctcttctcagGCATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt Alignment from Pairagon GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccaggctcagaagcattgtagtgctccttttcctttctcttctcagGCATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt Alignment from Exonerate_protein2genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccaggctcagaagcattgtagtgctccttttcctttctcttctcagGCATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt Alignment from Exonerate_coding2genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccaggctcagaagcattgtagtgctccttttcctttctcttctcagGCATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt Alignment from GeneWise GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccaggctcagaagcattgtagtgctccttttcctttctcttctcagGCATCTCATGGAAGGAGAAGGTCGCAGACCTCCGATTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCCTgtgagtattccagtttcatggctgaggtatttccaaatctcctcaaatgt #### Yif1a_ID832_4 --> 0 - 1 Original Alignment AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGagtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg Alignment from CESAR AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGagtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg Alignment from Spaln_aa2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGAgtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg Alignment from Spaln_nt2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGAgtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg Alignment from Pairagon AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGAgtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg Alignment from Exonerate_protein2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGAgtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg Alignment from Exonerate_coding2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGAgtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg Alignment from GeneWise AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagatcgttttactgctcttattgctctttggctttactcttctagAACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTCTATATCCCGAgtaaattggtgatgtacagtcaaccttcatctatgtacctagcaacaatg #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from GeneWise ---TTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc #### Zdhhc16_ID8348_5 --> 2 - 0 Original Alignment ccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt Alignment from CESAR ccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt Alignment from Spaln_aa2Genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt Alignment from Spaln_nt2Genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt Alignment from Pairagon CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt Alignment from Exonerate_protein2genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt Alignment from Exonerate_coding2genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt Alignment from GeneWise CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG attggacaaccccaaactacatctgatcgactggatcttcccaacaccagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgttagtctattactagcaaaaggctaaaaacgaaacagcttgagatgagt #### Zdhhc6_ID11623_6 --> 0 - 0 Original Alignment GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct Alignment from CESAR GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct Alignment from Spaln_aa2Genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct Alignment from Spaln_nt2Genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct Alignment from Pairagon GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct Alignment from Exonerate_protein2genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct Alignment from Exonerate_coding2genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct Alignment from GeneWise GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA gcccctgcaggtaaaagcagctcccgatcaggacatttttctttgcttagGCTAAAGATCACATTCAGTATTATCAATTGGATGAAGTCTTCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCAGGAGTTCCTGAAGGAGACGGACTTGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaagaagctaccttgcaaaggcccttccatgactccatcgtgtttacct #### Zfyve27_ID8425_7 --> 0 - 0 Original Alignment GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt Alignment from CESAR GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt Alignment from Spaln_aa2Genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt Alignment from Spaln_nt2Genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt Alignment from Pairagon GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt Alignment from Exonerate_protein2genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt Alignment from Exonerate_coding2genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt Alignment from GeneWise GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG actagggttgccaatcctcccccattactgtcctttctctgtgtccacagGACCTCACACCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCGGATGAGGAATTCAAAGATGCTATTGAGgtaagaggggctcaccctggcctctctactgaccaagccacatacttagt #### Zp1_ID3062_10 --> 0 - 1 Original Alignment GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAagtatgtctggggtatttactttccttgtgatccatgttattttggagctg Alignment from CESAR GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAagtatgtctggggtatttactttccttgtgatccatgttattttggagctg Alignment from Spaln_aa2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAAgtatgtctggggtatttactttccttgtgatccatgttattttggagctg Alignment from Spaln_nt2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAAgtatgtctggggtatttactttccttgtgatccatgttattttggagctg Alignment from Pairagon GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAAgtatgtctggggtatttactttccttgtgatccatgttattttggagctg Alignment from Exonerate_protein2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAAgtatgtctggggtatttactttccttgtgatccatgttattttggagctg Alignment from Exonerate_coding2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAAgtatgtctggggtatttactttccttgtgatccatgttattttggagctg Alignment from GeneWise GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ctctctttccagtcagcctacctgtacctgattttgactctctatcacagGTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTAGGGTCTGACACATGCTCTACTACGTGTGATTCTGGGATAGCAAgtatgtctggggtatttactttccttgtgatccatgttattttggagctg #### Zp1_ID3065_7 --> 1 - 1 Original Alignment gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg gtttgccccaacttacaaactctcccaatactgtatgacattttccctaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGggtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta Alignment from CESAR gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg gtttgccccaacttacaaactctcccaatactgtatgacattttccctaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGggtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta Alignment from Spaln_aa2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaaactctcccaatactgtatgacattttccctagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGGgtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta Alignment from Spaln_nt2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaaactctcccaatactgtatgacattttccctagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGGgtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta Alignment from Pairagon GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaaactctcccaatactgtatgacattttccctagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGGgtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta Alignment from Exonerate_protein2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaaactctcccaatactgtatgacattttccctagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGGgtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta Alignment from Exonerate_coding2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaaactctcccaatactgtatgacattttccctagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGGgtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta Alignment from GeneWise GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG gtttgccccaacttacaaactctcccaatactgtatgacattttccctagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCATCTATCTCTCCACCTCAACCTCCTGCCCCTGTGACACAATCTGGAGCCCTCAGGCTGCAGTTGAAGATTGCTATGGgtaagtgctctgactcaaccccacctggtaccttcccgtcttgcagctta #### Zp1_ID3070_2 --> 2 - 0 Original Alignment atGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagatGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc Alignment from CESAR atGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagatGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc Alignment from Spaln_aa2Genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc Alignment from Spaln_nt2Genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTC---TGATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc Alignment from Pairagon ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCT---CTGATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc Alignment from Exonerate_protein2genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc Alignment from Exonerate_coding2genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc Alignment from GeneWise ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG ttgccacccagtgcctgaagttccctcctcctgtccctgtccttctttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCT---GATTACAAGGGCTGTCATGTTCTAGAGAAGgtaaagagaggcacgtataaggacagtggtagagttgtcctcactgtctc ####